Query 042073
Match_columns 225
No_of_seqs 165 out of 1053
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 7.6E-96 3E-100 693.4 22.0 213 1-225 325-543 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 9.7E-95 3.3E-99 689.0 16.8 213 1-225 339-557 (557)
3 2efe_B Small GTP-binding prote 92.4 0.41 1.4E-05 36.4 7.1 70 30-102 100-174 (181)
4 3vni_A Xylose isomerase domain 92.2 3.3 0.00011 34.4 13.1 135 17-159 74-244 (294)
5 3nav_A Tryptophan synthase alp 91.6 0.39 1.3E-05 42.2 6.9 143 3-159 46-213 (271)
6 3a1s_A Iron(II) transport prot 91.4 0.15 5.2E-06 43.4 3.9 88 36-128 102-193 (258)
7 3t1o_A Gliding protein MGLA; G 91.1 0.8 2.7E-05 35.1 7.6 74 26-102 115-191 (198)
8 3qxb_A Putative xylose isomera 90.7 2.4 8.4E-05 36.1 11.0 142 17-159 100-285 (316)
9 3iev_A GTP-binding protein ERA 90.5 1.1 3.9E-05 38.8 8.8 70 32-104 110-183 (308)
10 2ekc_A AQ_1548, tryptophan syn 90.2 0.51 1.7E-05 40.7 6.2 143 3-159 43-211 (262)
11 2hk0_A D-psicose 3-epimerase; 89.9 2.8 9.6E-05 35.5 10.6 135 17-159 93-263 (309)
12 2ce2_X GTPase HRAS; signaling 89.4 1.3 4.4E-05 32.6 7.2 70 30-102 90-164 (166)
13 2yc2_C IFT27, small RAB-relate 89.4 0.84 2.9E-05 35.5 6.4 71 30-102 112-191 (208)
14 2wjg_A FEOB, ferrous iron tran 89.3 0.24 8.3E-06 38.2 3.1 72 30-104 98-170 (188)
15 2fu5_C RAS-related protein RAB 89.0 0.79 2.7E-05 35.1 5.9 71 29-102 95-170 (183)
16 1ega_A Protein (GTP-binding pr 88.9 2.9 9.9E-05 36.2 10.1 64 38-103 110-175 (301)
17 3kws_A Putative sugar isomeras 88.7 5.4 0.00019 33.2 11.4 108 17-127 90-218 (287)
18 1z0f_A RAB14, member RAS oncog 88.6 1 3.6E-05 33.8 6.2 67 32-101 108-176 (179)
19 2qw5_A Xylose isomerase-like T 88.2 1.6 5.6E-05 37.5 8.0 134 17-159 95-280 (335)
20 3tkl_A RAS-related protein RAB 88.1 1.5 5.3E-05 33.7 7.1 71 30-103 104-179 (196)
21 2nzj_A GTP-binding protein REM 88.1 1.5 5E-05 33.0 6.8 71 29-102 92-168 (175)
22 1g16_A RAS-related protein SEC 87.8 1.5 5.1E-05 32.6 6.6 71 30-103 91-165 (170)
23 3clv_A RAB5 protein, putative; 87.4 2.4 8.1E-05 32.2 7.7 70 30-102 132-203 (208)
24 3tva_A Xylose isomerase domain 87.4 1.9 6.4E-05 36.0 7.7 82 24-113 95-184 (290)
25 3c5h_A Glucocorticoid receptor 87.4 1.9 6.5E-05 36.1 7.7 70 30-102 180-254 (255)
26 1ujp_A Tryptophan synthase alp 87.3 0.26 9E-06 43.1 2.4 127 20-160 64-208 (271)
27 1kao_A RAP2A; GTP-binding prot 87.3 1.5 5.3E-05 32.3 6.4 57 43-102 107-165 (167)
28 2gf9_A RAS-related protein RAB 87.2 0.76 2.6E-05 35.6 4.8 70 30-102 110-184 (189)
29 3kkq_A RAS-related protein M-R 87.2 2.3 7.9E-05 32.4 7.6 58 42-102 121-181 (183)
30 3c5c_A RAS-like protein 12; GD 87.1 0.85 2.9E-05 35.7 5.1 72 29-102 106-185 (187)
31 2g6b_A RAS-related protein RAB 86.9 2.6 8.8E-05 31.8 7.6 71 30-103 99-174 (180)
32 3bc1_A RAS-related protein RAB 86.3 1.6 5.5E-05 33.1 6.2 70 30-102 109-184 (195)
33 2a9k_A RAS-related protein RAL 86.3 1.1 3.8E-05 33.9 5.2 57 43-102 122-180 (187)
34 3con_A GTPase NRAS; structural 86.2 2.2 7.7E-05 32.7 7.0 71 30-103 108-183 (190)
35 1u8z_A RAS-related protein RAL 86.2 1.8 6.2E-05 31.9 6.3 70 30-102 91-166 (168)
36 3q72_A GTP-binding protein RAD 86.1 2.3 7.9E-05 31.6 6.9 71 29-102 87-163 (166)
37 3bdk_A D-mannonate dehydratase 86.1 1.6 5.4E-05 40.1 7.0 25 26-50 99-123 (386)
38 1i60_A IOLI protein; beta barr 86.0 4.5 0.00016 33.0 9.2 90 21-113 74-174 (278)
39 1z06_A RAS-related protein RAB 85.8 1.2 4.1E-05 34.5 5.3 60 42-101 125-186 (189)
40 2bov_A RAla, RAS-related prote 85.6 2.4 8.4E-05 32.8 7.0 70 30-102 101-176 (206)
41 3t5g_A GTP-binding protein RHE 85.6 2.3 8E-05 32.3 6.8 59 42-103 109-169 (181)
42 2a5j_A RAS-related protein RAB 85.3 1.8 6.2E-05 33.6 6.1 70 30-102 109-183 (191)
43 1r2q_A RAS-related protein RAB 85.1 1.2 4E-05 33.2 4.7 70 29-101 93-167 (170)
44 1qop_A Tryptophan synthase alp 85.0 4 0.00014 35.0 8.7 143 3-159 43-210 (268)
45 2bcg_Y Protein YP2, GTP-bindin 85.0 2.8 9.5E-05 32.8 7.1 70 30-102 96-170 (206)
46 3ayv_A Putative uncharacterize 84.9 6.2 0.00021 32.2 9.5 90 17-114 62-163 (254)
47 2atx_A Small GTP binding prote 84.9 5 0.00017 30.9 8.6 69 30-101 105-191 (194)
48 2f7s_A C25KG, RAS-related prot 84.8 2.8 9.4E-05 33.1 7.1 71 29-102 122-198 (217)
49 1qtw_A Endonuclease IV; DNA re 84.6 6.3 0.00021 32.4 9.5 96 17-114 75-180 (285)
50 2fg5_A RAB-22B, RAS-related pr 84.6 1.2 4.1E-05 34.7 4.8 70 30-102 111-185 (192)
51 2e87_A Hypothetical protein PH 84.1 6 0.00021 34.8 9.7 57 44-103 280-336 (357)
52 3sjy_A Translation initiation 84.1 3.4 0.00011 37.1 8.1 70 30-102 114-191 (403)
53 1c1y_A RAS-related protein RAP 83.9 2.7 9.2E-05 31.1 6.3 69 30-101 90-165 (167)
54 3cpj_B GTP-binding protein YPT 83.7 1.7 5.9E-05 34.8 5.5 71 30-103 101-176 (223)
55 1z08_A RAS-related protein RAB 83.4 2.3 7.9E-05 31.7 5.8 69 30-101 94-167 (170)
56 2fn4_A P23, RAS-related protei 83.3 2.2 7.4E-05 32.1 5.6 71 30-103 96-172 (181)
57 3c8f_A Pyruvate formate-lyase 83.3 5.7 0.0002 31.8 8.5 58 30-87 146-206 (245)
58 2y8e_A RAB-protein 6, GH09086P 83.3 1.6 5.6E-05 32.7 4.9 69 30-101 102-175 (179)
59 3can_A Pyruvate-formate lyase- 83.1 3.4 0.00012 32.4 6.9 58 30-87 78-139 (182)
60 3cph_A RAS-related protein SEC 83.0 2.8 9.5E-05 32.7 6.3 70 30-102 108-181 (213)
61 4dhe_A Probable GTP-binding pr 82.9 5.8 0.0002 31.2 8.3 68 35-103 135-211 (223)
62 1z0j_A RAB-22, RAS-related pro 82.6 4.2 0.00014 30.1 6.9 69 30-101 94-167 (170)
63 3lmz_A Putative sugar isomeras 82.5 1.2 4.1E-05 36.8 4.2 48 30-83 88-135 (257)
64 2whl_A Beta-mannanase, baman5; 82.4 4.3 0.00015 34.5 7.7 56 33-89 33-92 (294)
65 1z2a_A RAS-related protein RAB 82.3 2.2 7.5E-05 31.6 5.2 69 30-101 93-165 (168)
66 1tz9_A Mannonate dehydratase; 82.2 4.1 0.00014 35.9 7.8 29 26-55 90-118 (367)
67 1zbd_A Rabphilin-3A; G protein 82.2 2.9 9.8E-05 32.6 6.1 70 30-102 96-170 (203)
68 3cqj_A L-ribulose-5-phosphate 82.1 12 0.00042 31.0 10.4 106 18-127 95-216 (295)
69 3q85_A GTP-binding protein REM 82.0 3.2 0.00011 30.9 6.1 71 29-102 90-166 (169)
70 3i8s_A Ferrous iron transport 82.0 0.66 2.3E-05 39.6 2.4 86 36-127 104-190 (274)
71 4dsu_A GTPase KRAS, isoform 2B 81.9 5.7 0.0002 30.0 7.6 57 43-102 108-165 (189)
72 2x7v_A Probable endonuclease 4 81.8 8.9 0.0003 31.5 9.3 96 17-114 75-179 (287)
73 3b1v_A Ferrous iron uptake tra 81.7 0.95 3.2E-05 39.0 3.3 85 37-128 100-189 (272)
74 2yv5_A YJEQ protein; hydrolase 81.2 4.8 0.00016 34.9 7.7 61 32-95 98-161 (302)
75 1x3s_A RAS-related protein RAB 81.0 4.3 0.00015 31.0 6.6 71 30-103 103-178 (195)
76 2oil_A CATX-8, RAS-related pro 80.7 3.8 0.00013 31.6 6.3 70 30-102 113-187 (193)
77 2elf_A Protein translation elo 80.6 3.4 0.00012 37.1 6.7 71 30-102 97-179 (370)
78 2il1_A RAB12; G-protein, GDP, 80.5 1.9 6.4E-05 33.7 4.4 70 30-102 114-189 (192)
79 1wb1_A Translation elongation 80.5 5.5 0.00019 37.0 8.3 69 31-102 112-188 (482)
80 3dz8_A RAS-related protein RAB 80.2 3.5 0.00012 31.9 5.9 71 30-103 111-186 (191)
81 2qul_A D-tagatose 3-epimerase; 80.0 7.6 0.00026 32.0 8.3 135 17-159 74-245 (290)
82 2p5s_A RAS and EF-hand domain 80.0 4.9 0.00017 31.3 6.8 70 30-102 116-196 (199)
83 2gco_A H9, RHO-related GTP-bin 79.8 8.3 0.00028 30.1 8.1 71 29-101 111-198 (201)
84 3iby_A Ferrous iron transport 79.7 0.87 3E-05 38.7 2.4 81 37-127 103-184 (256)
85 2o52_A RAS-related protein RAB 79.1 3 0.0001 32.8 5.2 70 30-102 113-187 (200)
86 2j0v_A RAC-like GTP-binding pr 78.9 3.9 0.00013 32.1 5.9 73 29-103 95-180 (212)
87 3tw8_B RAS-related protein RAB 78.7 5.9 0.0002 29.6 6.6 71 29-102 96-170 (181)
88 1wms_A RAB-9, RAB9, RAS-relate 78.7 4.5 0.00015 30.3 6.0 57 43-102 115-173 (177)
89 2hup_A RAS-related protein RAB 78.6 6.3 0.00021 31.0 7.1 72 30-103 117-193 (201)
90 2bme_A RAB4A, RAS-related prot 78.3 2.9 0.0001 31.8 4.8 63 37-102 108-172 (186)
91 3r7w_A Gtpase1, GTP-binding pr 78.3 6 0.00021 34.1 7.4 51 34-84 103-165 (307)
92 1lnz_A SPO0B-associated GTP-bi 78.2 7.5 0.00026 34.6 8.2 80 30-116 255-341 (342)
93 2hxs_A RAB-26, RAS-related pro 78.2 3.6 0.00012 30.9 5.3 70 30-102 95-172 (178)
94 1u0l_A Probable GTPase ENGC; p 77.5 9.1 0.00031 33.0 8.3 62 31-95 102-165 (301)
95 1zj6_A ADP-ribosylation factor 77.5 7 0.00024 29.9 6.9 71 30-103 99-178 (187)
96 2cxx_A Probable GTP-binding pr 77.4 4.2 0.00015 30.9 5.5 64 38-103 116-184 (190)
97 2atv_A RERG, RAS-like estrogen 77.4 3 0.0001 32.4 4.8 57 43-102 131-190 (196)
98 3oes_A GTPase rhebl1; small GT 77.3 4.4 0.00015 31.7 5.8 71 30-103 111-187 (201)
99 3qc0_A Sugar isomerase; TIM ba 77.3 22 0.00074 28.8 10.2 105 18-126 70-195 (275)
100 3obe_A Sugar phosphate isomera 77.1 5.5 0.00019 34.1 6.7 56 27-84 110-173 (305)
101 3pqc_A Probable GTP-binding pr 77.1 5.9 0.0002 30.1 6.3 63 37-102 126-193 (195)
102 4djt_A GTP-binding nuclear pro 76.4 5.2 0.00018 31.5 6.0 70 31-103 101-175 (218)
103 3u0h_A Xylose isomerase domain 76.1 6.7 0.00023 32.1 6.8 56 25-82 78-143 (281)
104 4bas_A ADP-ribosylation factor 76.0 14 0.00049 28.1 8.3 57 44-103 127-189 (199)
105 2h57_A ADP-ribosylation factor 75.9 8.8 0.0003 29.5 7.1 70 30-102 106-186 (190)
106 3ihw_A Centg3; RAS, centaurin, 75.9 8.7 0.0003 29.8 7.1 70 30-102 101-179 (184)
107 2erx_A GTP-binding protein DI- 75.5 2.2 7.5E-05 31.7 3.3 70 30-102 90-166 (172)
108 2zej_A Dardarin, leucine-rich 75.5 6.2 0.00021 30.4 6.1 74 30-103 96-178 (184)
109 3cbq_A GTP-binding protein REM 75.1 6.7 0.00023 30.8 6.3 72 29-103 111-188 (195)
110 1ek0_A Protein (GTP-binding pr 75.0 3.2 0.00011 30.7 4.1 69 30-101 91-167 (170)
111 1wky_A Endo-beta-1,4-mannanase 75.0 9.2 0.00031 35.4 8.1 57 33-90 41-101 (464)
112 3vnd_A TSA, tryptophan synthas 75.0 22 0.00075 30.9 10.0 143 3-159 44-211 (267)
113 3bwd_D RAC-like GTP-binding pr 74.2 5.6 0.00019 29.9 5.4 70 30-101 95-179 (182)
114 3dx5_A Uncharacterized protein 74.1 18 0.00062 29.7 9.0 83 27-113 80-172 (286)
115 3cny_A Inositol catabolism pro 74.1 23 0.00078 29.2 9.6 87 24-114 83-191 (301)
116 3gj0_A GTP-binding nuclear pro 73.7 2 6.7E-05 34.3 2.8 72 29-103 102-175 (221)
117 3l0i_B RAS-related protein RAB 73.7 1.4 4.7E-05 34.6 1.9 70 30-102 121-195 (199)
118 3lxx_A GTPase IMAP family memb 73.7 8.3 0.00028 31.3 6.7 60 43-103 144-214 (239)
119 3aal_A Probable endonuclease 4 73.4 16 0.00056 30.6 8.7 96 17-114 79-184 (303)
120 2q02_A Putative cytoplasmic pr 73.2 17 0.00059 29.5 8.6 14 62-75 87-100 (272)
121 2fv8_A H6, RHO-related GTP-bin 73.2 11 0.00039 29.4 7.2 72 29-102 111-199 (207)
122 1bqc_A Protein (beta-mannanase 72.9 7.1 0.00024 33.1 6.3 52 35-87 36-91 (302)
123 1m7b_A RND3/RHOE small GTP-bin 72.9 10 0.00036 28.9 6.8 70 30-101 94-181 (184)
124 2c78_A Elongation factor TU-A; 72.8 9.4 0.00032 34.1 7.4 44 31-74 114-163 (405)
125 3reg_A RHO-like small GTPase; 72.7 7.6 0.00026 29.9 6.0 72 30-103 110-188 (194)
126 2ew1_A RAS-related protein RAB 72.7 5 0.00017 32.0 5.0 70 30-102 114-188 (201)
127 1ub3_A Aldolase protein; schif 72.4 6.1 0.00021 33.5 5.7 68 21-91 92-164 (220)
128 4gzl_A RAS-related C3 botulinu 72.3 5.7 0.00019 31.3 5.2 70 29-100 116-202 (204)
129 2gf0_A GTP-binding protein DI- 72.2 4.6 0.00016 31.0 4.5 58 43-103 113-171 (199)
130 4ad1_A Glycosyl hydrolase fami 71.8 9.6 0.00033 34.7 7.3 68 31-102 104-175 (380)
131 1qwg_A PSL synthase;, (2R)-pho 71.7 16 0.00054 32.0 8.2 93 33-136 57-167 (251)
132 1ky3_A GTP-binding protein YPT 71.6 9.1 0.00031 28.5 6.0 57 43-102 117-177 (182)
133 1geq_A Tryptophan synthase alp 71.3 18 0.00062 29.7 8.4 125 22-160 55-197 (248)
134 2wji_A Ferrous iron transport 71.1 2.6 8.8E-05 32.1 2.8 65 34-101 98-163 (165)
135 1ksh_A ARF-like protein 2; sma 71.1 12 0.0004 28.4 6.7 71 30-103 101-180 (186)
136 2iwr_A Centaurin gamma 1; ANK 70.8 16 0.00054 27.4 7.3 71 29-102 87-168 (178)
137 2qag_A Septin-2, protein NEDD5 70.5 3.8 0.00013 36.5 4.2 59 43-101 173-235 (361)
138 3qq5_A Small GTP-binding prote 70.4 3.1 0.00011 38.4 3.7 70 31-103 127-196 (423)
139 2r32_A GCN4-PII/tumor necrosis 70.4 5 0.00017 33.0 4.4 41 117-167 11-56 (166)
140 3tha_A Tryptophan synthase alp 70.1 7.8 0.00027 33.7 6.0 143 3-159 40-204 (252)
141 1p9l_A Dihydrodipicolinate red 70.1 8.2 0.00028 33.0 6.1 57 34-94 59-116 (245)
142 3k53_A Ferrous iron transport 70.0 9.8 0.00034 31.8 6.5 95 31-131 96-195 (271)
143 2j1l_A RHO-related GTP-binding 69.9 14 0.00049 29.1 7.2 72 30-103 121-209 (214)
144 2zvr_A Uncharacterized protein 69.8 38 0.0013 28.0 10.1 108 17-127 99-222 (290)
145 3ngj_A Deoxyribose-phosphate a 69.7 8.2 0.00028 33.4 6.0 67 22-91 117-188 (239)
146 1svi_A GTP-binding protein YSX 69.7 11 0.00038 28.7 6.3 61 38-101 128-193 (195)
147 3t5d_A Septin-7; GTP-binding p 69.5 6.5 0.00022 33.0 5.2 61 37-101 138-202 (274)
148 1vg8_A RAS-related protein RAB 67.8 16 0.00055 28.1 6.9 57 43-102 116-174 (207)
149 3ug7_A Arsenical pump-driving 67.7 15 0.00052 32.3 7.5 18 58-75 250-267 (349)
150 1rd5_A Tryptophan synthase alp 67.6 18 0.00062 30.3 7.7 142 3-159 44-206 (262)
151 1d2e_A Elongation factor TU (E 67.3 13 0.00044 33.3 7.0 71 31-102 105-194 (397)
152 1gwn_A RHO-related GTP-binding 67.2 15 0.00051 29.1 6.8 70 30-101 115-202 (205)
153 1yrb_A ATP(GTP)binding protein 66.6 17 0.00058 29.5 7.1 60 40-102 167-256 (262)
154 1mh1_A RAC1; GTP-binding, GTPa 66.1 14 0.00048 27.7 6.1 72 30-103 92-180 (186)
155 1k77_A EC1530, hypothetical pr 66.1 25 0.00087 28.3 8.1 131 25-159 79-239 (260)
156 3p6l_A Sugar phosphate isomera 65.8 13 0.00043 30.4 6.2 35 40-75 72-106 (262)
157 1tv8_A MOAA, molybdenum cofact 65.1 13 0.00044 32.1 6.4 52 30-82 145-196 (340)
158 2qu8_A Putative nucleolar GTP- 64.1 16 0.00055 29.2 6.4 68 35-103 131-205 (228)
159 3hut_A Putative branched-chain 63.5 64 0.0022 26.8 10.8 119 36-159 88-225 (358)
160 2lkc_A Translation initiation 63.1 35 0.0012 25.3 7.8 66 35-103 98-171 (178)
161 3lxw_A GTPase IMAP family memb 63.1 17 0.00057 30.2 6.5 59 44-103 139-208 (247)
162 1moz_A ARL1, ADP-ribosylation 63.0 20 0.00069 26.8 6.5 73 30-102 101-179 (183)
163 1udx_A The GTP-binding protein 62.5 51 0.0017 30.2 10.2 76 23-103 250-325 (416)
164 1mzh_A Deoxyribose-phosphate a 62.0 37 0.0013 28.2 8.5 76 22-101 92-172 (225)
165 4ef8_A Dihydroorotate dehydrog 61.8 75 0.0026 28.5 11.0 156 29-202 110-315 (354)
166 1vcv_A Probable deoxyribose-ph 61.7 14 0.00049 31.4 5.9 61 21-84 87-152 (226)
167 1f76_A Dihydroorotate dehydrog 61.6 46 0.0016 28.9 9.4 37 44-82 211-247 (336)
168 2dyk_A GTP-binding protein; GT 61.6 4.8 0.00016 29.6 2.6 57 40-101 104-160 (161)
169 4dcu_A GTP-binding protein ENG 61.4 17 0.00058 33.1 6.7 67 34-103 296-369 (456)
170 2q3h_A RAS homolog gene family 61.4 25 0.00084 27.0 6.8 71 30-102 107-194 (201)
171 2zds_A Putative DNA-binding pr 61.3 34 0.0012 28.7 8.2 100 25-127 105-230 (340)
172 3j2k_7 ERF3, eukaryotic polype 60.7 14 0.00046 33.8 6.0 63 31-93 141-215 (439)
173 1kk1_A EIF2gamma; initiation o 60.6 17 0.0006 32.4 6.6 69 31-102 123-199 (410)
174 1s0u_A EIF-2-gamma, translatio 60.3 14 0.00049 33.0 5.9 69 31-102 121-197 (408)
175 3ngf_A AP endonuclease, family 60.0 43 0.0015 27.4 8.5 99 25-127 87-205 (269)
176 1yx1_A Hypothetical protein PA 59.3 29 0.00099 28.4 7.3 50 31-83 84-134 (264)
177 1upt_A ARL1, ADP-ribosylation 59.3 35 0.0012 25.0 7.2 71 30-103 90-169 (171)
178 1r8s_A ADP-ribosylation factor 58.9 24 0.0008 25.8 6.1 70 30-102 83-161 (164)
179 3llu_A RAS-related GTP-binding 58.8 25 0.00085 27.2 6.5 69 28-100 111-194 (196)
180 4eyg_A Twin-arginine transloca 58.4 78 0.0027 26.4 10.0 119 37-159 89-228 (368)
181 1f6b_A SAR1; gtpases, N-termin 58.3 15 0.00052 28.7 5.2 70 30-99 108-195 (198)
182 2g3y_A GTP-binding protein GEM 58.2 23 0.0008 28.7 6.5 71 29-102 126-202 (211)
183 2afh_E Nitrogenase iron protei 58.1 56 0.0019 27.1 9.0 116 28-159 159-278 (289)
184 4dkx_A RAS-related protein RAB 57.8 22 0.00075 29.1 6.3 71 29-102 100-175 (216)
185 1dos_A Aldolase class II; lyas 57.5 52 0.0018 30.0 9.2 80 21-102 77-165 (358)
186 2x77_A ADP-ribosylation factor 57.0 30 0.001 26.2 6.6 71 30-103 105-184 (189)
187 3l23_A Sugar phosphate isomera 56.9 49 0.0017 27.9 8.6 55 27-83 104-168 (303)
188 1xla_A D-xylose isomerase; iso 56.4 37 0.0013 30.1 8.0 107 17-125 102-234 (394)
189 3ijp_A DHPR, dihydrodipicolina 56.4 17 0.00059 32.0 5.7 53 40-98 108-160 (288)
190 2b6h_A ADP-ribosylation factor 56.1 29 0.00099 26.8 6.5 70 30-102 112-190 (192)
191 4f3y_A DHPR, dihydrodipicolina 56.0 18 0.0006 31.4 5.6 56 36-97 89-144 (272)
192 4acy_A Endo-alpha-mannosidase; 55.9 17 0.00059 33.2 5.8 70 31-103 103-174 (382)
193 3aam_A Endonuclease IV, endoiv 55.6 33 0.0011 28.0 7.0 22 27-48 84-105 (270)
194 3q3j_B RHO-related GTP-binding 55.5 17 0.00057 28.9 5.0 72 30-103 114-203 (214)
195 1ydn_A Hydroxymethylglutaryl-C 55.4 64 0.0022 27.5 9.1 105 27-136 116-230 (295)
196 2cjw_A GTP-binding protein GEM 55.0 32 0.0011 26.7 6.6 57 43-102 113-171 (192)
197 1u83_A Phosphosulfolactate syn 54.9 26 0.00088 31.1 6.5 95 32-138 81-193 (276)
198 2h17_A ADP-ribosylation factor 54.7 27 0.00092 26.4 6.0 67 30-99 104-179 (181)
199 3dpu_A RAB family protein; roc 54.6 11 0.00039 34.9 4.4 70 31-103 135-208 (535)
200 3jug_A Beta-mannanase; TIM-bar 53.9 42 0.0014 29.8 7.9 55 34-89 57-115 (345)
201 1r5b_A Eukaryotic peptide chai 53.4 27 0.00091 32.1 6.7 43 32-74 168-220 (467)
202 2obn_A Hypothetical protein; s 52.9 23 0.00078 32.1 6.0 56 37-98 289-347 (349)
203 1byi_A Dethiobiotin synthase; 52.8 30 0.001 27.3 6.1 47 29-75 151-198 (224)
204 1pui_A ENGB, probable GTP-bind 52.5 55 0.0019 25.2 7.5 9 67-75 131-139 (210)
205 3ndo_A Deoxyribose-phosphate a 52.5 27 0.00093 29.9 6.1 70 21-90 101-177 (231)
206 1zd9_A ADP-ribosylation factor 51.8 38 0.0013 25.8 6.4 71 29-102 105-184 (188)
207 1jny_A EF-1-alpha, elongation 51.4 22 0.00074 32.2 5.6 45 30-74 129-182 (435)
208 2yx0_A Radical SAM enzyme; pre 51.3 17 0.00056 31.6 4.7 49 30-78 222-270 (342)
209 3vzx_A Heptaprenylglyceryl pho 51.3 31 0.0011 29.4 6.3 120 15-149 82-220 (228)
210 3i65_A Dihydroorotate dehydrog 51.1 1.5E+02 0.0052 27.3 11.8 39 44-84 268-307 (415)
211 3ghf_A Septum site-determining 50.9 13 0.00046 28.4 3.6 57 19-80 23-81 (120)
212 3ez9_A Para; DNA binding, wing 50.1 31 0.0011 30.6 6.3 54 21-75 282-340 (403)
213 1f60_A Elongation factor EEF1A 49.4 17 0.00057 33.4 4.6 43 32-74 132-181 (458)
214 1jwy_B Dynamin A GTPase domain 48.7 19 0.00065 30.2 4.5 67 37-103 191-262 (315)
215 1m2o_B GTP-binding protein SAR 48.5 24 0.00081 27.3 4.8 69 30-98 106-187 (190)
216 1w8s_A FBP aldolase, fructose- 48.5 60 0.0021 27.6 7.7 55 39-101 133-194 (263)
217 3avx_A Elongation factor TS, e 48.2 37 0.0013 36.1 7.4 69 32-101 399-484 (1289)
218 3r12_A Deoxyribose-phosphate a 47.7 59 0.002 28.4 7.6 68 22-90 133-203 (260)
219 3bg3_A Pyruvate carboxylase, m 47.2 51 0.0017 32.7 7.9 53 30-82 223-283 (718)
220 2pju_A Propionate catabolism o 46.9 9.5 0.00032 32.3 2.3 77 36-131 120-197 (225)
221 3oam_A 3-deoxy-manno-octuloson 46.8 1.2E+02 0.0041 24.9 9.5 53 28-90 25-78 (252)
222 2wkq_A NPH1-1, RAS-related C3 46.5 33 0.0011 28.5 5.7 71 30-102 242-329 (332)
223 1h4p_A Glucan 1,3-beta-glucosi 46.1 37 0.0013 30.7 6.3 53 34-87 76-140 (408)
224 2ywe_A GTP-binding protein LEP 45.9 23 0.00077 34.2 5.0 69 34-102 115-183 (600)
225 3sg0_A Extracellular ligand-bi 45.8 1.3E+02 0.0043 25.1 9.3 116 35-157 104-243 (386)
226 1wf3_A GTP-binding protein; GT 45.7 72 0.0025 27.3 7.9 61 38-102 109-172 (301)
227 2wsm_A Hydrogenase expression/ 45.5 14 0.00047 29.1 3.0 60 42-102 152-213 (221)
228 3sr3_A Microcin immunity prote 45.2 16 0.00054 32.6 3.6 95 32-131 32-136 (336)
229 1t9h_A YLOQ, probable GTPase E 45.1 28 0.00095 30.6 5.2 43 33-75 106-152 (307)
230 4djd_C C/Fe-SP, corrinoid/iron 45.0 55 0.0019 30.8 7.4 59 14-77 156-229 (446)
231 2qjg_A Putative aldolase MJ040 45.0 1E+02 0.0035 25.5 8.6 11 92-102 132-142 (273)
232 1muw_A Xylose isomerase; atomi 44.6 64 0.0022 28.4 7.5 108 17-126 102-235 (386)
233 2ged_A SR-beta, signal recogni 44.3 25 0.00086 26.7 4.2 25 43-67 155-179 (193)
234 2q5c_A NTRC family transcripti 43.9 4.8 0.00016 33.1 0.0 67 43-127 116-182 (196)
235 3cb4_D GTP-binding protein LEP 43.7 28 0.00095 33.5 5.3 67 34-102 113-181 (599)
236 3p6l_A Sugar phosphate isomera 43.7 64 0.0022 26.1 6.9 47 31-83 91-137 (262)
237 1vm6_A DHPR, dihydrodipicolina 42.8 36 0.0012 29.2 5.3 58 35-98 68-125 (228)
238 3tr5_A RF-3, peptide chain rel 42.6 24 0.00082 33.3 4.6 42 34-75 124-165 (528)
239 3e5a_B Targeting protein for X 42.5 9 0.00031 25.0 1.1 16 159-174 2-17 (44)
240 1zun_B Sulfate adenylate trans 42.3 67 0.0023 28.9 7.4 43 31-73 143-192 (434)
241 2cw6_A Hydroxymethylglutaryl-C 42.0 95 0.0033 26.6 8.1 58 26-83 116-179 (298)
242 3mil_A Isoamyl acetate-hydroly 41.9 1.2E+02 0.004 23.4 9.2 77 22-103 94-209 (240)
243 2e6f_A Dihydroorotate dehydrog 41.9 70 0.0024 27.3 7.1 48 32-81 147-196 (314)
244 2rcn_A Probable GTPase ENGC; Y 41.9 45 0.0016 30.0 6.1 60 33-95 149-211 (358)
245 4e5s_A MCCFLIKE protein (BA_56 41.9 22 0.00077 31.6 4.1 99 22-132 28-136 (331)
246 3oa3_A Aldolase; structural ge 41.7 1E+02 0.0036 27.2 8.3 77 22-99 148-229 (288)
247 1g01_A Endoglucanase; alpha/be 41.6 1.1E+02 0.0037 26.6 8.5 53 34-87 56-117 (364)
248 1puj_A YLQF, conserved hypothe 41.5 47 0.0016 28.4 6.0 57 43-102 49-105 (282)
249 3o47_A ADP-ribosylation factor 41.3 56 0.0019 28.3 6.5 74 30-103 248-327 (329)
250 2y1h_A Putative deoxyribonucle 41.2 74 0.0025 26.0 7.0 17 33-49 128-144 (272)
251 2hf9_A Probable hydrogenase ni 41.1 23 0.00077 27.9 3.6 59 43-102 163-223 (226)
252 2ki0_A DS119; beta-alpha-beta, 40.9 28 0.00095 21.4 3.1 22 54-75 9-30 (36)
253 3th5_A RAS-related C3 botulinu 46.7 5.8 0.0002 30.9 0.0 28 30-57 117-147 (204)
254 3oix_A Putative dihydroorotate 40.5 2E+02 0.0068 25.6 11.7 101 29-135 111-222 (345)
255 1viz_A PCRB protein homolog; s 40.3 77 0.0026 27.0 7.1 103 34-145 97-218 (240)
256 3nra_A Aspartate aminotransfer 40.3 63 0.0022 27.4 6.6 44 44-88 179-226 (407)
257 3tla_A MCCF; serine protease, 40.0 19 0.00067 32.7 3.4 84 32-120 62-152 (371)
258 3qy9_A DHPR, dihydrodipicolina 39.8 30 0.001 29.4 4.4 89 41-152 73-162 (243)
259 3l46_A Protein ECT2; alternati 39.4 24 0.00082 26.7 3.3 37 38-78 12-52 (112)
260 1fzq_A ADP-ribosylation factor 39.2 51 0.0018 25.0 5.4 70 30-102 99-177 (181)
261 4evq_A Putative ABC transporte 38.4 1.7E+02 0.0058 24.3 12.2 122 33-159 95-237 (375)
262 2h6r_A Triosephosphate isomera 38.3 1.1E+02 0.0039 25.0 7.7 94 33-137 100-199 (219)
263 1jub_A Dihydroorotate dehydrog 38.2 75 0.0026 27.0 6.8 51 30-82 143-194 (311)
264 1svp_A Sindbis virus capsid pr 38.1 12 0.00042 30.3 1.5 65 150-224 59-124 (161)
265 3rot_A ABC sugar transporter, 37.9 1.6E+02 0.0055 23.8 8.7 67 35-103 77-158 (297)
266 3he4_A Synzip6; heterodimeric 37.8 23 0.00078 23.6 2.6 16 26-41 36-51 (56)
267 1vcp_A Semliki forest virus ca 37.6 13 0.00043 29.8 1.5 64 150-224 50-115 (149)
268 3vup_A Beta-1,4-mannanase; TIM 37.2 87 0.003 25.2 6.7 49 31-80 42-109 (351)
269 3w01_A Heptaprenylglyceryl pho 37.0 1.1E+02 0.0037 26.2 7.5 118 15-150 87-227 (235)
270 4eys_A MCCC family protein; MC 36.7 52 0.0018 29.3 5.6 62 32-97 26-93 (346)
271 2h5e_A Peptide chain release f 36.7 40 0.0014 31.7 5.1 44 32-75 122-165 (529)
272 2nx9_A Oxaloacetate decarboxyl 36.6 87 0.003 29.3 7.4 51 31-82 127-180 (464)
273 1twd_A Copper homeostasis prot 36.6 2E+02 0.0067 25.0 9.1 105 43-150 50-167 (256)
274 3dqq_A Putative tRNA synthase; 36.4 73 0.0025 29.1 6.7 46 22-71 171-216 (421)
275 3p94_A GDSL-like lipase; serin 36.4 1.1E+02 0.0039 22.9 7.0 45 30-75 100-157 (204)
276 3mfq_A TROA, high-affinity zin 36.3 1.4E+02 0.0049 25.4 8.2 81 17-103 132-236 (282)
277 3f75_P Toxopain-2, cathepsin L 36.3 46 0.0016 25.0 4.5 33 31-64 51-83 (106)
278 3civ_A Endo-beta-1,4-mannanase 36.0 52 0.0018 29.2 5.5 45 34-79 56-115 (343)
279 1n7k_A Deoxyribose-phosphate a 36.0 93 0.0032 26.4 6.9 56 32-89 121-178 (234)
280 1zl0_A Hypothetical protein PA 35.9 35 0.0012 30.2 4.3 60 33-96 34-99 (311)
281 1tp9_A Peroxiredoxin, PRX D (t 35.7 87 0.003 23.6 6.2 67 49-132 38-115 (162)
282 1h7e_A 3-deoxy-manno-octuloson 35.7 93 0.0032 24.8 6.6 42 29-80 26-69 (245)
283 4hf7_A Putative acylhydrolase; 35.7 1.5E+02 0.0053 23.0 9.3 46 30-75 104-162 (209)
284 1w0m_A TIM, triosephosphate is 35.5 2E+02 0.0068 24.2 9.0 92 33-134 103-199 (226)
285 3bbn_B Ribosomal protein S2; s 35.4 32 0.0011 29.5 3.9 48 30-82 134-189 (231)
286 1mky_A Probable GTP-binding pr 35.4 57 0.0019 29.3 5.8 67 30-102 95-165 (439)
287 1l1s_A Hypothetical protein MT 35.4 31 0.001 25.2 3.3 60 19-83 11-75 (113)
288 2qag_C Septin-7; cell cycle, c 35.1 52 0.0018 30.1 5.5 38 37-75 161-202 (418)
289 3gi1_A LBP, laminin-binding pr 34.9 1.7E+02 0.0057 25.0 8.5 67 17-84 150-238 (286)
290 3ewb_X 2-isopropylmalate synth 34.8 1.2E+02 0.0041 26.2 7.6 58 26-83 116-173 (293)
291 1g7s_A Translation initiation 34.7 1.6E+02 0.0055 28.1 9.0 23 34-56 112-134 (594)
292 3ldv_A Orotidine 5'-phosphate 34.5 1.7E+02 0.0057 25.1 8.3 104 37-147 71-192 (255)
293 3izy_P Translation initiation 34.4 16 0.00054 34.8 1.9 70 32-102 92-167 (537)
294 3apg_A Beta-glucosidase; TIM b 34.2 44 0.0015 31.4 4.9 30 27-56 125-154 (473)
295 3ovg_A Amidohydrolase; structu 34.0 45 0.0015 30.0 4.8 59 32-98 170-230 (363)
296 3p26_A Elongation factor 1 alp 33.9 49 0.0017 30.3 5.1 44 31-74 157-207 (483)
297 3ble_A Citramalate synthase fr 33.8 58 0.002 28.8 5.4 55 28-82 134-191 (337)
298 2bdq_A Copper homeostasis prot 33.8 2.2E+02 0.0075 24.2 9.9 91 41-134 51-150 (224)
299 7aat_A Aspartate aminotransfer 33.6 71 0.0024 27.2 5.8 45 46-91 176-225 (401)
300 3m47_A Orotidine 5'-phosphate 33.6 1.7E+02 0.0058 24.2 8.1 106 37-149 56-169 (228)
301 3cwq_A Para family chromosome 33.4 75 0.0025 25.3 5.6 43 32-75 107-151 (209)
302 3n9k_A Glucan 1,3-beta-glucosi 33.3 77 0.0026 28.7 6.3 53 34-87 76-139 (399)
303 1tvn_A Cellulase, endoglucanas 33.3 84 0.0029 26.2 6.2 54 34-88 41-106 (293)
304 1nvm_A HOA, 4-hydroxy-2-oxoval 33.2 80 0.0027 27.8 6.3 51 32-82 121-171 (345)
305 2lnd_A De novo designed protei 33.2 71 0.0024 23.8 4.9 62 33-103 40-101 (112)
306 2f9l_A RAB11B, member RAS onco 33.1 86 0.003 24.0 5.8 70 30-102 93-167 (199)
307 3fwy_A Light-independent proto 33.1 2.4E+02 0.0081 24.4 9.8 112 21-153 196-314 (314)
308 3k8d_A 3-deoxy-manno-octuloson 33.1 2.2E+02 0.0075 23.9 9.0 53 28-90 41-94 (264)
309 3i45_A Twin-arginine transloca 33.1 1.9E+02 0.0065 24.3 8.5 117 38-158 91-231 (387)
310 1pq4_A Periplasmic binding pro 32.7 2.3E+02 0.0079 24.1 9.8 65 17-82 161-245 (291)
311 3izq_1 HBS1P, elongation facto 32.6 80 0.0027 30.2 6.5 44 31-74 291-341 (611)
312 1sff_A 4-aminobutyrate aminotr 32.6 70 0.0024 27.4 5.6 29 55-84 215-243 (426)
313 2oze_A ORF delta'; para, walke 32.4 1.1E+02 0.0037 25.3 6.7 46 29-74 193-242 (298)
314 1ceo_A Cellulase CELC; glycosy 32.2 70 0.0024 27.2 5.6 53 34-87 31-95 (343)
315 2hjg_A GTP-binding protein ENG 31.9 55 0.0019 29.4 5.0 66 35-103 277-349 (436)
316 3cnl_A YLQF, putative uncharac 31.8 72 0.0025 26.9 5.5 48 44-95 46-93 (262)
317 3of5_A Dethiobiotin synthetase 31.7 61 0.0021 26.7 5.0 29 30-58 154-183 (228)
318 1egz_A Endoglucanase Z, EGZ, C 31.7 1.9E+02 0.0065 23.8 8.1 53 34-87 41-103 (291)
319 1ivn_A Thioesterase I; hydrola 31.6 1.6E+02 0.0056 22.0 9.3 71 30-103 85-176 (190)
320 2cho_A Glucosaminidase, hexosa 31.2 84 0.0029 31.1 6.5 49 30-79 143-204 (716)
321 3kbq_A Protein TA0487; structu 30.8 44 0.0015 27.1 3.8 60 132-206 90-156 (172)
322 3hp4_A GDSL-esterase; psychrot 30.8 1.6E+02 0.0056 21.8 7.9 45 31-75 90-139 (185)
323 2wfc_A Peroxiredoxin 5, PRDX5; 30.7 1.1E+02 0.0039 23.4 6.1 67 50-133 35-112 (167)
324 4h1h_A LMO1638 protein; MCCF-l 30.7 53 0.0018 28.9 4.6 58 35-96 34-97 (327)
325 3uma_A Hypothetical peroxiredo 30.3 1E+02 0.0034 24.4 5.9 73 44-132 56-136 (184)
326 3tfx_A Orotidine 5'-phosphate 30.2 1.4E+02 0.0049 25.6 7.2 158 20-192 35-215 (259)
327 3i4j_A Aminotransferase, class 30.1 62 0.0021 28.1 4.9 28 56-84 208-235 (430)
328 1jak_A Beta-N-acetylhexosamini 29.9 75 0.0026 30.0 5.7 49 30-79 173-249 (512)
329 1zzm_A Putative deoxyribonucle 29.8 1.1E+02 0.0039 24.6 6.3 17 33-49 116-132 (259)
330 3lvq_E ARF-GAP with SH3 domain 29.6 92 0.0032 28.1 6.2 71 30-103 405-484 (497)
331 3ez2_A Plasmid partition prote 29.5 80 0.0027 27.7 5.6 53 21-74 279-336 (398)
332 1tvl_A Protein YTNJ; beta-alph 29.5 1.5E+02 0.0051 27.1 7.6 61 57-122 367-428 (454)
333 1bxb_A Xylose isomerase; xylos 29.5 1.2E+02 0.004 26.7 6.7 136 17-155 102-282 (387)
334 2z2u_A UPF0026 protein MJ0257; 29.5 27 0.00094 29.5 2.5 48 30-79 202-249 (311)
335 2e6f_A Dihydroorotate dehydrog 29.2 2.1E+02 0.0072 24.2 8.1 36 36-74 84-120 (314)
336 3ktc_A Xylose isomerase; putat 29.1 1.3E+02 0.0044 25.5 6.8 139 17-159 93-270 (333)
337 1now_A Beta-hexosaminidase bet 28.9 43 0.0015 31.6 3.9 49 30-79 167-238 (507)
338 2wee_A MOBA-related protein; u 28.6 60 0.0021 24.8 4.1 50 29-86 30-80 (197)
339 4evu_A Putative periplasmic pr 28.5 49 0.0017 23.6 3.3 45 38-85 15-59 (72)
340 2qpt_A EH domain-containing pr 28.3 48 0.0016 31.3 4.1 39 31-69 205-243 (550)
341 1ezi_A CMP-N-acetylneuraminic 28.2 2E+02 0.0067 22.7 7.3 63 29-101 28-93 (228)
342 1fjk_A Cardiac phospholamban; 28.2 16 0.00056 24.3 0.6 28 120-147 2-31 (52)
343 3tr2_A Orotidine 5'-phosphate 28.2 1.6E+02 0.0055 24.8 7.1 102 37-144 52-171 (239)
344 1nrj_B SR-beta, signal recogni 27.9 73 0.0025 24.6 4.6 16 42-57 118-133 (218)
345 1hyq_A MIND, cell division inh 27.9 1.4E+02 0.0048 24.0 6.5 85 32-131 149-235 (263)
346 1xpj_A Hypothetical protein; s 27.8 1.4E+02 0.0048 21.8 6.0 42 34-75 30-79 (126)
347 2cks_A Endoglucanase E-5; carb 27.7 1.8E+02 0.0063 24.3 7.4 53 34-87 45-106 (306)
348 3p32_A Probable GTPase RV1496/ 27.7 62 0.0021 28.3 4.5 57 43-102 216-283 (355)
349 2qnr_A Septin-2, protein NEDD5 27.6 98 0.0033 26.4 5.7 32 44-75 155-190 (301)
350 1xim_A D-xylose isomerase; iso 27.6 1.2E+02 0.0041 26.7 6.4 107 17-126 102-235 (393)
351 2waw_A MOBA relate protein; un 27.4 76 0.0026 24.2 4.5 58 29-94 30-88 (199)
352 3mca_A HBS1, elongation factor 27.2 57 0.002 31.0 4.5 44 31-74 301-352 (592)
353 2x7v_A Probable endonuclease 4 27.1 2.4E+02 0.0081 22.7 7.8 77 38-115 54-146 (287)
354 3dx5_A Uncharacterized protein 27.0 2.2E+02 0.0074 23.0 7.5 135 32-184 49-205 (286)
355 4a6r_A Omega transaminase; tra 26.9 77 0.0026 28.1 5.0 27 57-84 237-263 (459)
356 3pv8_A DNA polymerase I; DNA p 26.9 17 0.00059 35.0 0.8 50 118-169 223-275 (592)
357 1hg3_A Triosephosphate isomera 26.8 2.5E+02 0.0087 23.5 8.1 92 33-134 106-202 (225)
358 2qjg_A Putative aldolase MJ040 26.7 2.7E+02 0.0091 22.9 8.7 37 39-75 140-181 (273)
359 1pyf_A IOLS protein; beta-alph 26.7 25 0.00085 30.2 1.7 50 35-86 160-209 (312)
360 3bdk_A D-mannonate dehydratase 26.4 1.7E+02 0.0058 26.5 7.3 42 37-79 36-82 (386)
361 2gax_A Hypothetical protein AT 26.4 68 0.0023 25.0 4.1 50 43-98 54-103 (135)
362 3lop_A Substrate binding perip 26.4 2.8E+02 0.0095 23.0 9.2 114 39-157 94-225 (364)
363 2pwj_A Mitochondrial peroxired 26.4 1.1E+02 0.0037 23.6 5.3 68 48-132 46-123 (171)
364 3zwt_A Dihydroorotate dehydrog 26.3 3E+02 0.01 24.5 8.9 39 43-83 219-257 (367)
365 3kjh_A CO dehydrogenase/acetyl 26.2 2E+02 0.0067 22.4 7.0 78 33-129 171-250 (254)
366 2f6k_A Metal-dependent hydrola 26.1 1.6E+02 0.0055 24.1 6.6 20 138-160 135-154 (307)
367 3meb_A Aspartate aminotransfer 26.0 1.6E+02 0.0054 25.9 7.0 45 46-91 203-252 (448)
368 3dc7_A Putative uncharacterize 25.9 2.3E+02 0.0079 21.9 7.7 70 32-103 115-222 (232)
369 2ba3_A NIKA; dimer, bacterial 25.9 43 0.0015 21.2 2.4 18 58-75 23-40 (51)
370 1hf2_A MINC, septum site-deter 25.8 49 0.0017 27.4 3.3 53 21-77 19-74 (210)
371 2a4v_A Peroxiredoxin DOT5; yea 25.8 1.4E+02 0.0049 21.9 5.8 9 60-68 53-61 (159)
372 3fdb_A Beta C-S lyase, putativ 25.8 1.4E+02 0.0049 24.7 6.4 29 58-87 168-196 (377)
373 3hcn_A Ferrochelatase, mitocho 25.8 2.8E+02 0.0094 24.9 8.5 70 34-103 252-327 (359)
374 2gjx_A Beta-hexosaminidase alp 25.7 67 0.0023 30.2 4.6 49 30-79 161-233 (507)
375 3rjz_A N-type ATP pyrophosphat 25.7 68 0.0023 27.3 4.3 122 40-165 24-153 (237)
376 2csu_A 457AA long hypothetical 25.5 2.8E+02 0.0094 25.4 8.7 69 35-103 26-119 (457)
377 3iwp_A Copper homeostasis prot 25.4 3.5E+02 0.012 23.8 10.0 114 43-158 88-213 (287)
378 3elf_A Fructose-bisphosphate a 25.4 3.2E+02 0.011 24.7 8.9 75 26-102 68-152 (349)
379 2lyd_B Pacman protein; DCP1, X 25.2 26 0.00088 21.9 1.1 12 199-210 17-28 (38)
380 3gkn_A Bacterioferritin comigr 25.2 1.5E+02 0.0051 21.7 5.8 39 30-75 55-93 (163)
381 2c0h_A Mannan endo-1,4-beta-ma 25.1 1.5E+02 0.0051 24.9 6.4 50 30-80 44-110 (353)
382 1xvl_A Mn transporter, MNTC pr 25.0 1.4E+02 0.0048 26.1 6.3 69 16-85 172-264 (321)
383 1p0k_A Isopentenyl-diphosphate 24.8 3.4E+02 0.012 23.4 8.9 45 33-82 166-211 (349)
384 4dfk_A DNA polymerase I, therm 24.7 24 0.00084 33.6 1.4 50 118-169 171-224 (540)
385 1olt_A Oxygen-independent copr 24.7 1.1E+02 0.0037 27.8 5.7 57 21-77 177-237 (457)
386 1gp6_A Leucoanthocyanidin diox 24.6 1.2E+02 0.0042 26.7 5.9 63 44-123 46-112 (356)
387 1ni5_A Putative cell cycle pro 24.6 1.3E+02 0.0044 27.4 6.2 52 43-95 41-95 (433)
388 3lmz_A Putative sugar isomeras 24.6 1.1E+02 0.0037 24.7 5.2 14 170-183 182-195 (257)
389 1xwy_A DNAse TATD, deoxyribonu 24.6 97 0.0033 25.1 4.9 17 33-49 114-130 (264)
390 1oix_A RAS-related protein RAB 24.5 1E+02 0.0035 23.6 4.9 67 30-99 117-188 (191)
391 3g23_A Peptidase U61, LD-carbo 24.5 1.4E+02 0.0047 25.7 6.1 51 43-97 32-88 (274)
392 2g0w_A LMO2234 protein; putati 24.3 3E+02 0.01 22.6 8.9 14 62-75 107-120 (296)
393 1gvf_A Tagatose-bisphosphate a 24.3 2.4E+02 0.0083 24.6 7.7 67 29-102 58-125 (286)
394 1toa_A Tromp-1, protein (perip 24.1 3.5E+02 0.012 23.4 11.1 78 17-100 166-267 (313)
395 3n0w_A ABC branched chain amin 24.0 3.2E+02 0.011 22.8 9.8 114 37-154 90-224 (379)
396 3iix_A Biotin synthetase, puta 24.0 1.3E+02 0.0043 25.6 5.7 55 21-75 166-223 (348)
397 4do7_A Amidohydrolase 2; enzym 23.9 2.6E+02 0.0089 23.3 7.7 48 31-86 122-170 (303)
398 3cjp_A Predicted amidohydrolas 23.8 2.9E+02 0.0098 22.3 8.9 20 34-53 16-35 (272)
399 4eu1_A Mitochondrial aspartate 23.8 1.7E+02 0.006 24.9 6.6 45 45-90 183-232 (409)
400 3loq_A Universal stress protei 23.6 2E+02 0.0068 23.5 6.7 72 59-134 184-255 (294)
401 2h9a_A Carbon monoxide dehydro 23.6 1.1E+02 0.0038 28.5 5.6 99 43-155 126-228 (445)
402 3irs_A Uncharacterized protein 23.6 2.2E+02 0.0076 23.8 7.1 22 137-161 137-158 (291)
403 3tcm_A Alanine aminotransferas 23.6 1.6E+02 0.0054 26.6 6.6 58 21-86 219-282 (500)
404 2z6i_A Trans-2-enoyl-ACP reduc 23.5 1.7E+02 0.0059 25.3 6.6 55 37-101 103-161 (332)
405 2yci_X 5-methyltetrahydrofolat 23.5 3.5E+02 0.012 23.1 9.0 70 32-101 113-193 (271)
406 3i5t_A Aminotransferase; pyrid 23.5 95 0.0033 27.9 5.0 54 30-84 207-265 (476)
407 4b4o_A Epimerase family protei 23.5 2.8E+02 0.0097 22.5 7.7 43 91-133 196-240 (298)
408 1vjz_A Endoglucanase; TM1752, 23.3 1.3E+02 0.0043 25.6 5.6 53 33-86 38-102 (341)
409 3sgz_A Hydroxyacid oxidase 2; 23.2 3.2E+02 0.011 24.5 8.4 91 35-138 207-302 (352)
410 1wcv_1 SOJ, segregation protei 23.1 1.2E+02 0.0041 24.6 5.2 48 28-75 149-200 (257)
411 3ihj_A Alanine aminotransferas 23.1 1.2E+02 0.004 27.6 5.6 42 45-87 236-281 (498)
412 3snr_A Extracellular ligand-bi 23.1 3E+02 0.01 22.3 8.0 118 35-157 84-219 (362)
413 1wn2_A Peptidyl-tRNA hydrolase 23.1 2.1E+02 0.0073 21.6 6.3 35 41-79 51-85 (121)
414 3gg7_A Uncharacterized metallo 23.1 1.1E+02 0.0039 25.8 5.2 29 30-62 103-132 (254)
415 2hbv_A 2-amino-3-carboxymucona 23.0 3.4E+02 0.011 22.8 10.4 95 62-160 60-177 (334)
416 2a6s_A Toxin YOEB; YEFM, antit 23.0 34 0.0012 23.2 1.5 17 133-149 2-18 (84)
417 3sgv_B Undecaprenyl pyrophosph 23.0 3.7E+02 0.013 23.2 8.6 100 27-128 44-162 (253)
418 1j6o_A TATD-related deoxyribon 22.9 85 0.0029 25.9 4.3 56 31-99 120-178 (268)
419 3iv3_A Tagatose 1,6-diphosphat 22.9 4.1E+02 0.014 23.7 9.0 142 36-195 115-280 (332)
420 3k28_A Glutamate-1-semialdehyd 22.9 1.4E+02 0.0048 25.9 5.9 27 57-84 218-244 (429)
421 4h08_A Putative hydrolase; GDS 22.8 1.5E+02 0.0053 22.5 5.6 71 31-102 96-195 (200)
422 1yix_A Deoxyribonuclease YCFH; 22.8 87 0.003 25.2 4.2 19 31-49 111-129 (265)
423 3cx3_A Lipoprotein; zinc-bindi 22.7 1.4E+02 0.005 25.2 5.8 67 17-84 148-236 (284)
424 3b0p_A TRNA-dihydrouridine syn 22.7 3.9E+02 0.013 23.4 8.9 50 32-81 113-165 (350)
425 2zc0_A Alanine glyoxylate tran 22.7 2E+02 0.007 24.2 6.8 43 45-88 175-222 (407)
426 2epl_X N-acetyl-beta-D-glucosa 22.7 1.1E+02 0.0036 29.8 5.4 49 30-79 101-163 (627)
427 3ipw_A Hydrolase TATD family p 22.5 98 0.0033 27.4 4.8 18 32-49 155-173 (325)
428 1ydo_A HMG-COA lyase; TIM-barr 22.5 3.1E+02 0.011 23.7 8.1 57 26-82 117-179 (307)
429 2a5h_A L-lysine 2,3-aminomutas 22.3 1.4E+02 0.0048 26.9 5.9 50 34-86 213-264 (416)
430 2pd2_A Hypothetical protein ST 22.3 1.1E+02 0.0037 21.7 4.3 55 23-82 10-69 (108)
431 1qwj_A Cytidine monophospho-N- 22.2 2.1E+02 0.007 22.8 6.4 43 29-81 27-71 (229)
432 1vff_A Beta-glucosidase; glyco 22.2 2.3E+02 0.008 25.9 7.4 52 28-83 304-362 (423)
433 4eiv_A Deoxyribose-phosphate a 22.2 4.1E+02 0.014 23.6 8.7 71 21-91 121-197 (297)
434 1qnr_A Endo-1,4-B-D-mannanase; 22.2 89 0.003 26.3 4.3 51 31-82 36-111 (344)
435 1wxq_A GTP-binding protein; st 22.2 1.5E+02 0.0051 26.6 6.0 34 42-75 212-245 (397)
436 3vqt_A RF-3, peptide chain rel 22.1 81 0.0028 29.7 4.4 44 32-75 140-183 (548)
437 2prs_A High-affinity zinc upta 22.0 2.1E+02 0.0072 24.1 6.7 67 17-84 145-233 (284)
438 3end_A Light-independent proto 21.9 1.6E+02 0.0055 24.5 5.9 86 29-134 196-289 (307)
439 4h8e_A Undecaprenyl pyrophosph 21.9 3.5E+02 0.012 23.4 8.1 105 21-127 45-167 (256)
440 3mwd_B ATP-citrate synthase; A 21.9 1.6E+02 0.0056 26.2 6.2 75 21-103 9-129 (334)
441 1tq4_A IIGP1, interferon-induc 21.9 1.4E+02 0.0048 27.2 5.8 90 38-129 169-283 (413)
442 3qho_A Endoglucanase, 458AA lo 21.9 3.2E+02 0.011 25.0 8.4 54 33-87 86-160 (458)
443 2i5e_A Hypothetical protein MM 21.9 1.2E+02 0.0042 24.0 4.9 35 33-67 146-183 (211)
444 2ob3_A Parathion hydrolase; me 21.8 1.9E+02 0.0065 24.9 6.5 24 57-81 142-168 (330)
445 1z8m_A Conserved hypothetical 21.6 55 0.0019 22.3 2.4 20 133-152 3-22 (88)
446 3omy_A Protein TRAM; DNA bindi 21.4 35 0.0012 23.1 1.2 28 115-142 9-39 (52)
447 3l44_A Glutamate-1-semialdehyd 21.4 1.6E+02 0.0055 25.4 5.9 27 57-84 220-246 (434)
448 3pzt_A Endoglucanase; alpha/be 21.4 3.2E+02 0.011 23.4 7.9 52 36-88 73-132 (327)
449 3ixr_A Bacterioferritin comigr 21.3 1.6E+02 0.0055 22.5 5.4 9 60-68 69-77 (179)
450 2zv3_A PTH, peptidyl-tRNA hydr 21.2 2E+02 0.007 21.5 5.8 31 41-75 45-75 (115)
451 3rcm_A TATD family hydrolase; 21.2 1E+02 0.0034 26.6 4.5 20 30-49 113-132 (287)
452 2qgq_A Protein TM_1862; alpha- 21.1 2E+02 0.0069 24.3 6.4 50 31-80 139-191 (304)
453 1jub_A Dihydroorotate dehydrog 21.0 3.7E+02 0.013 22.5 12.7 97 33-135 79-190 (311)
454 2eh6_A Acoat, acetylornithine 21.0 86 0.003 26.2 4.0 27 57-84 190-216 (375)
455 4dq6_A Putative pyridoxal phos 20.9 1.1E+02 0.0036 25.7 4.5 28 59-87 183-210 (391)
456 4ggd_C Mitotic checkpoint seri 20.9 18 0.00062 20.8 -0.2 13 17-29 4-16 (26)
457 1dih_A Dihydrodipicolinate red 20.9 2.2E+02 0.0075 24.2 6.6 12 137-148 168-179 (273)
458 1aj0_A DHPS, dihydropteroate s 20.9 72 0.0025 27.8 3.5 11 44-54 110-120 (282)
459 3o3m_B Beta subunit 2-hydroxya 20.8 2.9E+02 0.0098 24.5 7.6 66 39-104 308-375 (385)
460 3kax_A Aminotransferase, class 20.8 2.3E+02 0.0078 23.5 6.6 30 58-88 174-203 (383)
461 2q02_A Putative cytoplasmic pr 20.7 2.8E+02 0.0096 22.0 7.0 43 33-75 21-66 (272)
462 2vp8_A Dihydropteroate synthas 20.7 1.1E+02 0.0038 27.2 4.8 44 32-75 231-284 (318)
463 2cy8_A D-phgat, D-phenylglycin 20.6 1.7E+02 0.0057 25.6 5.9 38 46-84 202-245 (453)
464 3ea0_A ATPase, para family; al 20.5 1.2E+02 0.004 24.0 4.5 86 30-130 155-244 (245)
465 4fcu_A 3-deoxy-manno-octuloson 20.3 3.2E+02 0.011 22.6 7.5 43 28-80 24-68 (253)
466 1mky_A Probable GTP-binding pr 20.1 2.4E+02 0.0083 25.1 7.0 61 40-103 288-355 (439)
467 3b9o_A Alkane monoxygenase; LA 20.0 3E+02 0.01 24.8 7.7 61 58-122 355-416 (440)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=7.6e-96 Score=693.39 Aligned_cols=213 Identities=35% Similarity=0.592 Sum_probs=208.3
Q ss_pred CCCCCCCccCCCCCccccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 1 ~HGGv~~~~lg~pl~~~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
||||+++ ++|.+||++||++||+||+|||+|+++||+|||||||||++||++||++|+++|+++|++ +++|
T Consensus 325 ~hGG~~~--------~~l~~enl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s 395 (543)
T 3do6_A 325 YHGGANL--------KNIHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVS 395 (543)
T ss_dssp HHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEE
T ss_pred hcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEe
Confidence 7999997 566669999999999999999999999999999999999999999999999999999996 9999
Q ss_pred cccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-HhccCCCCCCHHHHHHHHHHHHCCCCCCCeeE
Q 042073 81 SHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 81 ~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCm 159 (225)
+||++||+|+++||++|+++|+ +++|+|||++++||+|||++||+ ||||++|+||++|++||++|+++||++|||||
T Consensus 396 ~~wa~GG~G~~~LA~~Vv~~~e--~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCm 473 (543)
T 3do6_A 396 EVFKKGSEGGVELAKAVAEAAK--DVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIV 473 (543)
T ss_dssp CHHHHGGGGSHHHHHHHHHHCC--CCCCCCSSCTTSCHHHHHHHHHHHTSCCSEEEECHHHHHHHHHHHHTTCTTSCEEE
T ss_pred chhhccchhHHHHHHHHHHHhc--CCCcccccCCCCCHHHHHHHHHHHHcCCCeEEECHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999999997 57899999999999999999999 99999999999999999999999999999999
Q ss_pred eecCCCcCCC-----CCCCceEEeeEEEeecCCceeeeecccccccCCCCCCCceeeeeeeCCCCeeeccC
Q 042073 160 AKTQHSFSHN-----APTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225 (225)
Q Consensus 160 AKTqyS~Sdd-----~P~~f~~~vrdv~~~~GAgFiv~~~G~i~tMPGLpk~Paa~~idvd~~~G~I~GL~ 225 (225)
|||||||||| +|+||+|||||||+|+||||||++||+|||||||||+|+|++|||| ++|+|+|||
T Consensus 474 AKTqySlS~dp~~~G~P~gf~~~irdv~~saGAGFiv~l~G~i~tMPGLp~~Paa~~idvd-~~G~i~GLf 543 (543)
T 3do6_A 474 AKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPGLPKKPNALNMDVD-DSGNIVGVS 543 (543)
T ss_dssp ECCSSSSSSCTTCCSCCCSCEEEECEEEEETTTTEEEEECSCCCSSCCCCSSCGGGGCEEC-TTSCEESCC
T ss_pred EccCcCcccCccccCCCCCceEEeeEEEEcCCCcEEEEEeCcceeCCCCCCCccceeCcCC-CCCCEeeCC
Confidence 9999999999 9999999999999999999999999999999999999999999999 999999998
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=9.7e-95 Score=689.03 Aligned_cols=213 Identities=44% Similarity=0.696 Sum_probs=206.1
Q ss_pred CCCCCCCccCCCCCccccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 1 ~HGGv~~~~lg~pl~~~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
||||+++ ++|.+||++||++||+||+|||+|+++||+|||||||||++||++||++|+++|+++|++ +++|
T Consensus 339 ~hGG~~~--------~~l~~en~~al~~G~~NL~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~~ 409 (557)
T 3pzx_A 339 MHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE-VALS 409 (557)
T ss_dssp HHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEE-EECH
T ss_pred hcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEE
Confidence 7999997 566669999999999999999999999999999999999999999999999999999996 9999
Q ss_pred cccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-HhccCCCCCCHHHHHHHHHHHHCCCCCCCeeE
Q 042073 81 SHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 81 ~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCm 159 (225)
|++||+|+++||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||++|+++||++|||||
T Consensus 410 --wa~GG~G~~~LA~~Vv~~~~~~~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCm 487 (557)
T 3pzx_A 410 --WAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVM 487 (557)
T ss_dssp --HHHGGGGGHHHHHHHHHHHHHCCCCCCCSSCTTSCHHHHHHHHHHHTTCCSCEEECHHHHHHHHHHHHTTCTTSCBCC
T ss_pred --ecccchhHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHHHhCCCeEEECHHHHHHHHHHHHcCCCCCCEEE
Confidence 999999999999999999997678899999999999999999999 99999999999999999999999999999999
Q ss_pred eecCCCcCCC-----CCCCceEEeeEEEeecCCceeeeecccccccCCCCCCCceeeeeeeCCCCeeeccC
Q 042073 160 AKTQHSFSHN-----APTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225 (225)
Q Consensus 160 AKTqyS~Sdd-----~P~~f~~~vrdv~~~~GAgFiv~~~G~i~tMPGLpk~Paa~~idvd~~~G~I~GL~ 225 (225)
|||||||||| +|+||+|||||||+|+||||||++||+|||||||||+|+|++|||| ++|+|+|||
T Consensus 488 AKTqyS~S~dp~~~G~P~gf~~~ir~v~~s~GAGFiv~l~G~i~tMPGLp~~Paa~~idvd-~~G~i~GLf 557 (557)
T 3pzx_A 488 AKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGLF 557 (557)
T ss_dssp BCCSSCSSSSTTCCSSCCSCCEEECCCEEETTTEEECBCSSCCCCSCCCCSSCGGGGCBCS-SSCCBCC--
T ss_pred EcCCcCcCcCccccCCCCCceEEeeEEEEcCCCcEEEEEeCcceeCCCCCCCccceecccC-CCCCEeecC
Confidence 9999999999 9999999999999999999999999999999999999999999999 999999998
No 3
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.39 E-value=0.41 Score=36.45 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKAY---GVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~f---GvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++.. ++|++|++|+.....+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 100 FERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETS--AKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC--SSSCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 55666666666653 899999999976533222 35567888888885 54443 5668999999888887664
No 4
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=92.16 E-value=3.3 Score=34.45 Aligned_cols=135 Identities=12% Similarity=0.149 Sum_probs=86.0
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEE-ec-----CCC--CCcHHH-------HHHHHHHHHHcCCCeEEEcc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVA-VN-----MFA--TDSEAE-------LNAVRIAAMAAGAFDAVVCS 81 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVA-IN-----~F~--~DT~~E-------i~~i~~~c~~~g~~~~avs~ 81 (225)
.+..+|.+.-++.+..+++.|+..+.+|.+.|+. +. .|+ .++++. ++.+.+.+++.|+. +++-+
T Consensus 74 ~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn 152 (294)
T 3vni_A 74 NLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVD-FCLEV 152 (294)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEe
Confidence 3555788888899999999999999999999985 22 233 233333 34455667788996 88877
Q ss_pred ccc-cCc-hhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh-Hh------------ccCCCCCCHHH
Q 042073 82 HHA-HGG-KGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR-SY------------GASGVEYSEEA 140 (225)
Q Consensus 82 ~wa-~GG-~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~-IY------------GA~~V~~s~~A 140 (225)
+.. .+. -...+-+..+++.+. +.++..++|. ..++.+=|+++.. |. |-..+.|
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~~i~~vHl~D~~r~~pG~G~id~---- 226 (294)
T 3vni_A 153 LNRFENYLINTAQEGVDFVKQVD--HNNVKVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHTGECNRKVPGRGRIPW---- 226 (294)
T ss_dssp CCTTTCSSCCSHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSCHHHHHHHHGGGEEEEEECCTTSCCTTSSSCCH----
T ss_pred cCcccCcccCCHHHHHHHHHHcC--CCCEEEEEEhhhhHHcCCCHHHHHHHhhhhEeEEEeCCCCCCCCCCCCcCH----
Confidence 732 221 123344445555553 3346666654 3567777887775 54 2233433
Q ss_pred HHHHHHHHHCCCCCCCeeE
Q 042073 141 EKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 141 ~~~l~~~e~~G~~~lPVCm 159 (225)
..-++.+++.||+. |+++
T Consensus 227 ~~~~~~L~~~gy~g-~~~l 244 (294)
T 3vni_A 227 VEIGEALADIGYNG-SVVM 244 (294)
T ss_dssp HHHHHHHHHTTCCS-CEEE
T ss_pred HHHHHHHHHhCCCC-cEEE
Confidence 45677788889976 6655
No 5
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=91.64 E-value=0.39 Score=42.23 Aligned_cols=143 Identities=16% Similarity=0.218 Sum_probs=87.0
Q ss_pred CCCCCccCCCCCccc------cccccHHHHHHhHH--HHHHHHHHHhh--cCCeEEEE--ecC-CCCCcHHHHHHHHHHH
Q 042073 3 GGGPQVVAGKPLDHA------YLNENVALVEAGCV--NLARHIANTKA--YGVNVVVA--VNM-FATDSEAELNAVRIAA 69 (225)
Q Consensus 3 GGv~~~~lg~pl~~~------l~~eN~~al~~G~~--NL~~HIeNi~~--fGvpvVVA--IN~-F~~DT~~Ei~~i~~~c 69 (225)
+|+...++|-|..+- ..+-+..||+.|+. ++...++.+|+ ..+|+|+- .|- |.... +...+.|
T Consensus 46 ~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~----~~f~~~~ 121 (271)
T 3nav_A 46 AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGI----DDFYQRC 121 (271)
T ss_dssp TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCH----HHHHHHH
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhH----HHHHHHH
Confidence 566666677554332 33456778999953 55667777775 47898873 362 43333 4445678
Q ss_pred HHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-----Hh-----ccCCC--CCC
Q 042073 70 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-----SY-----GASGV--EYS 137 (225)
Q Consensus 70 ~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-----IY-----GA~~V--~~s 137 (225)
++.|+..+.+.+.=- +-++.+++.+.+..-.+-+|-..+.|. +.+++|++ || |-.+. .++
T Consensus 122 ~~aGvdGvIipDlp~-------ee~~~~~~~~~~~gl~~I~lvap~t~~-eri~~i~~~~~gfiY~vs~~GvTG~~~~~~ 193 (271)
T 3nav_A 122 QKAGVDSVLIADVPT-------NESQPFVAAAEKFGIQPIFIAPPTASD-ETLRAVAQLGKGYTYLLSRAGVTGAETKAN 193 (271)
T ss_dssp HHHTCCEEEETTSCG-------GGCHHHHHHHHHTTCEEEEEECTTCCH-HHHHHHHHHCCSCEEECCCC--------CC
T ss_pred HHCCCCEEEECCCCH-------HHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHHCCCeEEEEeccCCCCcccCCc
Confidence 889998656655432 225666666664322345566666554 56666654 57 22233 356
Q ss_pred HHHHHHHHHHHHCCCCCCCeeE
Q 042073 138 EEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 138 ~~A~~~l~~~e~~G~~~lPVCm 159 (225)
+...+.++++.+.- ++|||+
T Consensus 194 ~~~~~~v~~vr~~~--~~Pv~v 213 (271)
T 3nav_A 194 MPVHALLERLQQFD--APPALL 213 (271)
T ss_dssp HHHHHHHHHHHHTT--CCCEEE
T ss_pred hhHHHHHHHHHHhc--CCCEEE
Confidence 77788899998874 799998
No 6
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.40 E-value=0.15 Score=43.42 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=59.7
Q ss_pred HHHHHhhcCCeEEEEecCCCCCcHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCC--CCccccc
Q 042073 36 HIANTKAYGVNVVVAVNMFATDSEAELN-AVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT--QPLKFLY 112 (225)
Q Consensus 36 HIeNi~~fGvpvVVAIN~F~~DT~~Ei~-~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~--~~f~~lY 112 (225)
-+..+..+++|+|+++|+..-....++. .+.++++..|++ +..+ =+.-|+|-.+|-+.+++.+.... ..++..|
T Consensus 102 ~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~--SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y 178 (258)
T 3a1s_A 102 LLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFT--SSVTGEGLEELKEKIVEYAQKNTILHRMILDY 178 (258)
T ss_dssp HHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEEC--CTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCC
T ss_pred HHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEE--EeeCCcCHHHHHHHHHHHhhccccCCCcccCC
Confidence 3445666899999999986432111111 256678888997 5433 35678999999999999876321 2244456
Q ss_pred CCCCCHHHHHHHHHh-H
Q 042073 113 PSDVSIKEKIDTIAR-S 128 (225)
Q Consensus 113 ~~~~~i~eKI~~IA~-I 128 (225)
+ ..++..|.+|.. +
T Consensus 179 ~--~~~~~~i~~~~~~~ 193 (258)
T 3a1s_A 179 G--EKVESEIKKVENFL 193 (258)
T ss_dssp C--HHHHHHHHHHHHHH
T ss_pred c--hhHHHHHHHHHHHH
Confidence 3 468999999998 7
No 7
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.15 E-value=0.8 Score=35.10 Aligned_cols=74 Identities=20% Similarity=0.177 Sum_probs=52.5
Q ss_pred HHHhHHHHHHHHHHHhh--cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCC-CeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 26 VEAGCVNLARHIANTKA--YGVNVVVAVNMFATDSEAELNAVRIAAMAAGA-FDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~~--fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~-~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
-+.-+.+|.+.+..++. .++|+|++.|+..-..+...+.+++++++.|+ . +..+. ++=|+|-.+|-+.+++.+.
T Consensus 115 ~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 115 NAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP-VLEAV--ATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC-EEECB--GGGTBTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce-EEEEe--cCCCcCHHHHHHHHHHHHH
Confidence 34557788888888754 68999999999765433444556788888888 5 44333 4557888888887777654
No 8
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=90.72 E-value=2.4 Score=36.09 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=84.4
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-cC-----CCC--CcHHH-------HHHHHHHHHHcCCCeEEEcc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-NM-----FAT--DSEAE-------LNAVRIAAMAAGAFDAVVCS 81 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~-----F~~--DT~~E-------i~~i~~~c~~~g~~~~avs~ 81 (225)
.+..+|.+.-++.+..+++.|+-.+.+|.++||.- .. |.. ++++. +..+.+.+++.|+..+++-+
T Consensus 100 ~l~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~ 179 (316)
T 3qxb_A 100 HFLAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVEP 179 (316)
T ss_dssp BTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 45567888889999999999999999999999742 11 111 22222 44455667788994255544
Q ss_pred --ccccCchhhHHHHHHHHHHhhc-CCCCcccccC-----------CCCCHHHHHHHHHh-Hh--ccCCCCC------C-
Q 042073 82 --HHAHGGKGAVDLGIAVQRACEN-VTQPLKFLYP-----------SDVSIKEKIDTIAR-SY--GASGVEY------S- 137 (225)
Q Consensus 82 --~wa~GG~Ga~~LA~~Vv~~~e~-~~~~f~~lY~-----------~~~~i~eKI~~IA~-IY--GA~~V~~------s- 137 (225)
++..=+.-..+ +..+++.++. ++..+..++| .+.++.+=|++... |. ..++... .
T Consensus 180 ~~~~~~~~~t~~~-~~~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~i~~vHlkD~~~~~d~h~~~ 258 (316)
T 3qxb_A 180 VPLATEFPSSAAD-AARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPWIAAYHIQQTDGQLDRHWSF 258 (316)
T ss_dssp CSCTTBSSCSHHH-HHHHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGGEEEEEECBCCSSSCCCBCT
T ss_pred cCCccccCCCHHH-HHHHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhhheEEeeecCCCCcCccCCC
Confidence 33221222222 3344455521 2234665554 24567777777765 42 2222111 1
Q ss_pred -----HHHHHHHHHHHHCCCCCCCeeE
Q 042073 138 -----EEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 138 -----~~A~~~l~~~e~~G~~~lPVCm 159 (225)
-.-..-++.+++.||+.+|||+
T Consensus 259 ~G~G~id~~~i~~~L~~~gy~g~~v~l 285 (316)
T 3qxb_A 259 TQPGVVTPQRLQDFWDKYALTDQTFFA 285 (316)
T ss_dssp TSCSSCCHHHHHHHHHHTTCSSCCEEE
T ss_pred CCCceECHHHHHHHHHHcCCCCceEEE
Confidence 1345567788899999999987
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.55 E-value=1.1 Score=38.81 Aligned_cols=70 Identities=13% Similarity=-0.005 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCC-cHHH-HHHHHHHHHHcC--CCeEEEccccccCchhhHHHHHHHHHHhhcC
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATD-SEAE-LNAVRIAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACENV 104 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~D-T~~E-i~~i~~~c~~~g--~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~ 104 (225)
++...++.++..++|+|+++|+.... ..++ .+.+.++++..+ .. +. ..=+.-|+|-.+|-+.+.+.+...
T Consensus 110 ~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~-i~--~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 110 DEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE-IV--PISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC-EE--ECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred hHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe-EE--EEeCCCCCCHHHHHHHHHHhCccC
Confidence 33333777888999999999997653 3333 344555666665 33 33 334677899999999999988653
No 10
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=90.19 E-value=0.51 Score=40.66 Aligned_cols=143 Identities=12% Similarity=0.156 Sum_probs=78.1
Q ss_pred CCCCCccCCCCCccc------cccccHHHHHHhH--HHHHHHHHHHhh-c-CCeEEE--EecC-CCCCcHHHHHHHHHHH
Q 042073 3 GGGPQVVAGKPLDHA------YLNENVALVEAGC--VNLARHIANTKA-Y-GVNVVV--AVNM-FATDSEAELNAVRIAA 69 (225)
Q Consensus 3 GGv~~~~lg~pl~~~------l~~eN~~al~~G~--~NL~~HIeNi~~-f-GvpvVV--AIN~-F~~DT~~Ei~~i~~~c 69 (225)
+|+....+|-|..+. ..+-+..||+.|+ .+....++.+|+ + .+|+++ -.|. |.... +...+.|
T Consensus 43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~----~~f~~~~ 118 (262)
T 2ekc_A 43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGL----EKFCRLS 118 (262)
T ss_dssp TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCH----HHHHHHH
T ss_pred cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhH----HHHHHHH
Confidence 455555666655432 2334556788887 567788888887 5 899888 2342 22222 2334567
Q ss_pred HHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-----Hhcc-----CCC--CCC
Q 042073 70 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-----SYGA-----SGV--EYS 137 (225)
Q Consensus 70 ~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-----IYGA-----~~V--~~s 137 (225)
.+.|+..+.+.+.= .+-.+.+++.+.+..-.+-++...+.+. +.++.|++ +|-. .+. .++
T Consensus 119 ~~aG~dgvii~dl~-------~ee~~~~~~~~~~~gl~~i~l~~p~t~~-~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~ 190 (262)
T 2ekc_A 119 REKGIDGFIVPDLP-------PEEAEELKAVMKKYVLSFVPLGAPTSTR-KRIKLICEAADEMTYFVSVTGTTGAREKLP 190 (262)
T ss_dssp HHTTCCEEECTTCC-------HHHHHHHHHHHHHTTCEECCEECTTCCH-HHHHHHHHHCSSCEEEESSCC---------
T ss_pred HHcCCCEEEECCCC-------HHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHhCCCCEEEEecCCccCCCCCcC
Confidence 88999745443321 1334555566654222233444555443 46666555 3321 111 123
Q ss_pred -HHHHHHHHHHHHCCCCCCCeeE
Q 042073 138 -EEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 138 -~~A~~~l~~~e~~G~~~lPVCm 159 (225)
+...+.++++.+.- ++|||+
T Consensus 191 ~~~~~~~v~~vr~~~--~~pv~v 211 (262)
T 2ekc_A 191 YERIKKKVEEYRELC--DKPVVV 211 (262)
T ss_dssp CHHHHHHHHHHHHHC--CSCEEE
T ss_pred cccHHHHHHHHHhhc--CCCEEE
Confidence 45567788888753 789987
No 11
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=89.86 E-value=2.8 Score=35.50 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=82.5
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-----cCCCC---CcHHH-------HHHHHHHHHHcCCCeEEEcc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-----NMFAT---DSEAE-------LNAVRIAAMAAGAFDAVVCS 81 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-----N~F~~---DT~~E-------i~~i~~~c~~~g~~~~avs~ 81 (225)
.+..+|.+.-++.+..+++.|+..+.+|.+.||.- .+|+. ++++. +..+.+.+++.|+. +++-+
T Consensus 93 ~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn 171 (309)
T 2hk0_A 93 NLSSEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGIN-LCIEV 171 (309)
T ss_dssp CSSCSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCE-EEEee
Confidence 34556777778899999999999999999999853 33422 33333 34455567788996 88888
Q ss_pred ccccCc--hhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh-Hhc------------cCCCCCCHHH
Q 042073 82 HHAHGG--KGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR-SYG------------ASGVEYSEEA 140 (225)
Q Consensus 82 ~wa~GG--~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~-IYG------------A~~V~~s~~A 140 (225)
++...+ -...+-+..+++.+. ..++..++|. ..++.+=|++... |.. ...+. -
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~v~--~~~vg~~~D~~H~~~~g~d~~~~l~~~~~~i~~vHl~D~~r~~~G~G~id----~ 245 (309)
T 2hk0_A 172 LNRFENHVLNTAAEGVAFVKDVG--KNNVKVMLDTFHMNIEEDSFGDAIRTAGPLLGHFHTGESNRRVPGKGRMP----W 245 (309)
T ss_dssp CCTTTCSSCCSHHHHHHHHHHHT--CTTEEEEEEHHHHHHHCSCHHHHHHHHGGGEEEEEECCTTSCCTTSSCCC----H
T ss_pred cccccccccCCHHHHHHHHHHcC--CCCeEEEEehhhHhhcCcCHHHHHHHHHhhEEEEEeCCCCCCCCcCCccC----H
Confidence 753211 123444455566554 2346666653 3456666777665 532 22222 3
Q ss_pred HHHHHHHHHCCCCCCCeeE
Q 042073 141 EKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 141 ~~~l~~~e~~G~~~lPVCm 159 (225)
..-++.+.+.||+. |+++
T Consensus 246 ~~~~~~L~~~gy~g-~i~l 263 (309)
T 2hk0_A 246 HEIGLALRDINYTG-AVIM 263 (309)
T ss_dssp HHHHHHHHHTTCCS-EEEE
T ss_pred HHHHHHHHHcCCCC-cEEE
Confidence 44566677778864 5544
No 12
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.42 E-value=1.3 Score=32.57 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCc-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDS-EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT-~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.++. .++|+++++|+-.... +...+.+.+++++.|+. +..+ =+.-|+|-.+|-+.+++.+.
T Consensus 90 ~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIET--SAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEE--CTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHHHH
Confidence 3444444444444 3899999999976422 12234566778888886 4433 34567888888888887664
No 13
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.40 E-value=0.84 Score=35.47 Aligned_cols=71 Identities=13% Similarity=-0.013 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhh------cCCeEEEEecCCCCCc-HHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA------YGVNVVVAVNMFATDS-EAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~------fGvpvVVAIN~F~~DT-~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.+.++.++. .++|++|++|+-.-.. +.+ .+.+.+++++.|+. +..+....+ |+|-.+|-+.+++.
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~-~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 112 FESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANPP-GKDADAPFLSIATT 189 (208)
T ss_dssp HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCCC-CcCHHHHHHHHHHH
Confidence 5566666776665 4899999999976543 222 35677888889985 554444331 67888887777776
Q ss_pred hh
Q 042073 101 CE 102 (225)
Q Consensus 101 ~e 102 (225)
+.
T Consensus 190 ~~ 191 (208)
T 2yc2_C 190 FY 191 (208)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.27 E-value=0.24 Score=38.20 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcC
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFATDSEAEL-NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 104 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei-~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~ 104 (225)
+.++...++.++..+.|++++.|+-.-....++ +.+.+++++.|+. +..+. ++-|+|-.+|-+.+++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 98 LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEE--ecCCCCHHHHHHHHHHHHHhc
Confidence 345666777788899999999998432111111 1346677778886 54444 566889999999999988653
No 15
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.04 E-value=0.79 Score=35.08 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhh---cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKA---YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.+.++.+.++.++. -++|++|++|+..-..+.+ .+.+.++|++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 95 s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 95 SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETS--AKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECC--C---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 35566666666665 3899999999976532211 34456788888885 54443 3557888888777777654
No 16
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.94 E-value=2.9 Score=36.16 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=45.3
Q ss_pred HHHhhcCCeEEEEecCCCCCc-HHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 38 ANTKAYGVNVVVAVNMFATDS-EAEL-NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 38 eNi~~fGvpvVVAIN~F~~DT-~~Ei-~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++..+.|+++++|+-...+ .+++ +.+.++++..|... +-..-+.=|+|-.+|.+.+.+.+..
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~--~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLD--IVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSE--EEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCc--eEEEECCCCCCHHHHHHHHHHhCCc
Confidence 345568999999999987766 4555 55666666667632 2244567788999999998887643
No 17
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=88.70 E-value=5.4 Score=33.16 Aligned_cols=108 Identities=13% Similarity=0.021 Sum_probs=68.2
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe---cCCCC---CcHHH-------HHHHHHHHHHcCCCeEEEccc-
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV---NMFAT---DSEAE-------LNAVRIAAMAAGAFDAVVCSH- 82 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI---N~F~~---DT~~E-------i~~i~~~c~~~g~~~~avs~~- 82 (225)
.+...|.+..++.+..+++.|+..+.+|.+.||.- ..|.. ++++. ++.+.+.+++.|+. +++-++
T Consensus 90 ~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~ 168 (287)
T 3kws_A 90 FILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTS-VIFEPLN 168 (287)
T ss_dssp CTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCC-EEECCCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 34557778888999999999999999999998863 22321 44444 44455667789997 888755
Q ss_pred -cccCchhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh
Q 042073 83 -HAHGGKGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR 127 (225)
Q Consensus 83 -wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~ 127 (225)
|...--...+-+..+++.+. +.++..++|. ..++.+=|++...
T Consensus 169 ~~~~~~~~~~~~~~~ll~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 218 (287)
T 3kws_A 169 RKECFYLRQVADAASLCRDIN--NPGVRCMGDFWHMTWEETSDMGAFISGGE 218 (287)
T ss_dssp TTTCSSCCCHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSCHHHHHHHHGG
T ss_pred cccCcccCCHHHHHHHHHHcC--CCCeeEEeehHHHHhcCCCHHHHHHHhhh
Confidence 32111122334445555553 3446666542 4566667777665
No 18
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.59 E-value=1 Score=33.84 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
++.+.+......++|+++++|+..-..+.+ .+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEAS--AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 333444444457899999999976533222 35667888888885 54443 455788888887777665
No 19
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=88.21 E-value=1.6 Score=37.50 Aligned_cols=134 Identities=10% Similarity=0.073 Sum_probs=79.1
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-----cCCCC--C------------cHHH-------HHHHHHHHH
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-----NMFAT--D------------SEAE-------LNAVRIAAM 70 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-----N~F~~--D------------T~~E-------i~~i~~~c~ 70 (225)
.+..+|.+.-++.+..++++|+..+.+|.++|+.. .+|+. + +++. ++.+.+.++
T Consensus 95 ~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~ 174 (335)
T 2qw5_A 95 DPSSNYPEQRQEALEYLKSRVDITAALGGEIMMGPIVIPYGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAE 174 (335)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCccccccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34446677788999999999999999999999642 45533 2 3433 345566677
Q ss_pred HcCCCeEEEccccccCc--hhhHHHHHHHHHHhhcCCCCcccccCC------CCCHH---HHHHHHH--h-Hh-------
Q 042073 71 AAGAFDAVVCSHHAHGG--KGAVDLGIAVQRACENVTQPLKFLYPS------DVSIK---EKIDTIA--R-SY------- 129 (225)
Q Consensus 71 ~~g~~~~avs~~wa~GG--~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~---eKI~~IA--~-IY------- 129 (225)
+.|+. +++-++..-.+ -...+-+..+++.+. +..+..+||. ..++. +=|++.. . |+
T Consensus 175 ~~Gv~-l~lE~~~~~~~~~~~t~~~~~~ll~~v~--~~~vgl~~D~~H~~~~g~d~~~~~~~l~~~~~~~ri~~vHlkD~ 251 (335)
T 2qw5_A 175 IKKVK-LAIEPITHWETPGPNKLSQLIEFLKGVK--SKQVGVVIDSAHEILDGEGPEIFKTQVEYLAQQGRLHYVQVSPP 251 (335)
T ss_dssp HHTCE-EEECCCCTTTCSSCCSHHHHHHHHTTCC--CTTEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred HcCCE-EEEeeCCcccccccCCHHHHHHHHHhcC--CCCeeEEEecccchhccCChHHHHHHHHHhCCcCCEEEEEECCC
Confidence 88996 88877632111 112333333444442 2346666643 33555 6677766 3 33
Q ss_pred -----ccCCCCCCHHHHHHHHHHHHCCCCCCCeeE
Q 042073 130 -----GASGVEYSEEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 130 -----GA~~V~~s~~A~~~l~~~e~~G~~~lPVCm 159 (225)
|-..|. -..-++.+.+ ||+. |+++
T Consensus 252 ~~~~~G~G~id----~~~i~~~L~~-gy~G-~~~~ 280 (335)
T 2qw5_A 252 DRGALHTSWLP----WKSFLTPIVK-VYDG-PIAV 280 (335)
T ss_dssp TSSCSSSSCCC----HHHHHHHHHH-HCCS-CEEE
T ss_pred CCCCCCCCCcC----HHHHHHHHHc-cCCc-cEEE
Confidence 222333 3445566777 7755 4544
No 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.11 E-value=1.5 Score=33.67 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.+.++.++. -++|+|+++|+-.-..+. ..+...+++...|+. +..+. +.-|+|-.+|-+.+++.+.+
T Consensus 104 ~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 104 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETS--AKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEEC--TTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 4455555555544 489999999997643322 224567888889997 54433 46688888888887777654
No 21
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.05 E-value=1.5 Score=32.95 Aligned_cols=71 Identities=13% Similarity=0.007 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhhc----CCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKAY----GVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~f----GvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.+.++.+.++.++.+ ++|+|+++|+-.-..+.+ .+..++++.+.|+. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 92 s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~--Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 92 SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIET--SATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEE--ecCCCCCHHHHHHHHHHHHH
Confidence 455666666666554 899999999976533222 23456777778875 4433 35667888888888887664
No 22
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.75 E-value=1.5 Score=32.64 Aligned_cols=71 Identities=8% Similarity=0.078 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCc-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDS-EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT-~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.+.++.+++ .++|+++++|+-.-.. ....+.+.+++++.|+. +..+. ++-|+|-.+|-+.+.+.+.+
T Consensus 91 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 91 FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHHH
Confidence 4445555555544 4899999999975421 11234456778888886 54443 45678888888888877653
No 23
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.40 E-value=2.4 Score=32.23 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhh-cCCeEEEEecCCCCC-cHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA-YGVNVVVAVNMFATD-SEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~-fGvpvVVAIN~F~~D-T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++. .+.|+|+++|+-..+ .+...+.+++++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 132 ~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 132 LDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL-FIQTS--AKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 5566777777765 679999999997621 122345677888888885 44333 4567888888888877664
No 24
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=87.38 E-value=1.9 Score=36.03 Aligned_cols=82 Identities=7% Similarity=0.022 Sum_probs=56.3
Q ss_pred HHHHHhHHHHHHHHHHHhhcCCeEEEEe-cCCCCCcHHH-------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 042073 24 ALVEAGCVNLARHIANTKAYGVNVVVAV-NMFATDSEAE-------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 24 ~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~F~~DT~~E-------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
+.-++.+..+++.|+..+.+|.+.||.. ...+.++++. ++.+.+.+++.|+. +++-+++ ...+-+.
T Consensus 95 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~-----~~~~~~~ 168 (290)
T 3tva_A 95 ETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQA-VHLETGQ-----ESADHLL 168 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCE-EEEECCS-----SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC-----CCHHHHH
Confidence 3456778999999999999999999874 3344443333 44555667788996 8888886 2345555
Q ss_pred HHHHHhhcCCCCcccccC
Q 042073 96 AVQRACENVTQPLKFLYP 113 (225)
Q Consensus 96 ~Vv~~~e~~~~~f~~lY~ 113 (225)
.+++.+. +..+..+||
T Consensus 169 ~l~~~~~--~~~~g~~~D 184 (290)
T 3tva_A 169 EFIEDVN--RPNLGINFD 184 (290)
T ss_dssp HHHHHHC--CTTEEEEEC
T ss_pred HHHHhcC--CCCEEEEec
Confidence 6666664 345777765
No 25
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=87.35 E-value=1.9 Score=36.06 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~-g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.+.+ -++|+||+.|+-.-..+.+++.+.+++++. ++. +..+ =++=|+|-.+|-+.+++.++
T Consensus 180 ~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~e~--SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 180 FDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ-VVET--SARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe-EEEE--ECCCCCCHHHHHHHHHHHhc
Confidence 4555555555543 489999999998766677788888888864 775 4433 35667888888887776653
No 26
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=87.34 E-value=0.26 Score=43.09 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=68.5
Q ss_pred cccHHHHHHhH--HHHHHHHHHHhh-cCCeEEEE--ec-CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHH
Q 042073 20 NENVALVEAGC--VNLARHIANTKA-YGVNVVVA--VN-MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDL 93 (225)
Q Consensus 20 ~eN~~al~~G~--~NL~~HIeNi~~-fGvpvVVA--IN-~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~L 93 (225)
.-+..||+.|+ .++.+.++.+|+ ..+|+|+- .| -|...++.++ +.|.+.|+..+.+.+.=- .+
T Consensus 64 ~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~----~~~~~aG~dGviv~Dl~~------ee- 132 (271)
T 1ujp_A 64 RASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFF----GLFKQAGATGVILPDLPP------DE- 132 (271)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHH----HHHHHHTCCEEECTTCCG------GG-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHH----HHHHHcCCCEEEecCCCH------HH-
Confidence 34567788887 456677888887 48998883 35 3433444444 457778997454443321 22
Q ss_pred HHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-----HhccC-----C--CCCCHHHHHHHHHHHHCCCCCCCeeEe
Q 042073 94 GIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-----SYGAS-----G--VEYSEEAEKQIKMYTRQGFSGLPFCMA 160 (225)
Q Consensus 94 A~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-----IYGA~-----~--V~~s~~A~~~l~~~e~~G~~~lPVCmA 160 (225)
.+..++.+.+..-.+-+|.....+.+ .|+.|+. +|-.. + -.+++...+.++++.+. .++|||+.
T Consensus 133 ~~~~~~~~~~~gl~~i~liap~s~~e-ri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~--~~~Pv~vG 208 (271)
T 1ujp_A 133 DPGLVRLAQEIGLETVFLLAPTSTDA-RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKAR--TALPVAVG 208 (271)
T ss_dssp CHHHHHHHHHHTCEEECEECTTCCHH-HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTT--CCSCEEEE
T ss_pred HHHHHHHHHHcCCceEEEeCCCCCHH-HHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhh--cCCCEEEE
Confidence 22333444322223456666766665 5666554 33211 1 11222234566777765 37899873
No 27
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.27 E-value=1.5 Score=32.27 Aligned_cols=57 Identities=23% Similarity=0.099 Sum_probs=39.5
Q ss_pred cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++|+++++|+..-..+.+ .+...+++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 107 EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETS--AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEEC--TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEec--CCCCcCHHHHHHHHHHHHh
Confidence 5899999999975322222 23456778888886 44333 5668898888888887664
No 28
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.24 E-value=0.76 Score=35.65 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKAY---GVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~f---GvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++++ ++|++|++|+-.-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 110 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 110 FAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEAS--AKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 45566666666654 899999999986543222 34567788888885 44333 5667888888888887654
No 29
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.22 E-value=2.3 Score=32.36 Aligned_cols=58 Identities=9% Similarity=-0.086 Sum_probs=41.0
Q ss_pred hcCCeEEEEecCCCCCc--HHHHHHHHHHHHHcCCCeEEEcccccc-CchhhHHHHHHHHHHhh
Q 042073 42 AYGVNVVVAVNMFATDS--EAELNAVRIAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRACE 102 (225)
Q Consensus 42 ~fGvpvVVAIN~F~~DT--~~Ei~~i~~~c~~~g~~~~avs~~wa~-GG~Ga~~LA~~Vv~~~e 102 (225)
..++|+|+++|+-.-.. ....+.++++|++.|+. +..+. ++ -|+|-.+|-+.+++.+.
T Consensus 121 ~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETS--AKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEB--CSSSCBSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEec--cCCCCCCHHHHHHHHHHHHh
Confidence 47899999999976422 22234467788888886 44333 45 78899998888887764
No 30
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.08 E-value=0.85 Score=35.67 Aligned_cols=72 Identities=7% Similarity=-0.114 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHhh------cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 29 GCVNLARHIANTKA------YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 29 G~~NL~~HIeNi~~------fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
.+.++.+.++.++. -++|+|++.|+-.-..+.+ .+.+.+++++.|+. +..+... +-|+|-.+|-+.+++.
T Consensus 106 s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~-~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 106 SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSAC-LDFEHVQHVFHEAVRE 183 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSS-SCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeec-CccccHHHHHHHHHHH
Confidence 45666666666654 3899999999965422211 24456788888885 5444331 5688988888888876
Q ss_pred hh
Q 042073 101 CE 102 (225)
Q Consensus 101 ~e 102 (225)
+.
T Consensus 184 i~ 185 (187)
T 3c5c_A 184 AR 185 (187)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.89 E-value=2.6 Score=31.81 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.+.++.++. .++|+++++|+..-..+. ..+.+.+++++.|+. +..+. ++=|+|-.+|-+.+.+.+.+
T Consensus 99 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 99 FDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETS--AKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 4455555555543 689999999997654322 233456778888886 54443 45678888998888887754
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.34 E-value=1.6 Score=33.14 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.++. .++|++|++|+..-..+. ..+.+++++.+.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 109 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 109 FLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFETS--AANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 4455555555544 589999999997653321 134567788888886 44433 4557888888777777654
No 33
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.30 E-value=1.1 Score=33.91 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=40.1
Q ss_pred cCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++|++|++|+..-..+ ...+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 48999999999754222 2245567788888885 44333 4557888888888887764
No 34
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.23 E-value=2.2 Score=32.74 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCc-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDS-EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT-~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++...++.++. .++|++|++|+..-.. ....+.+++++++.|+. +..+ =+.-|+|-.+|-+.+++.+.+
T Consensus 108 ~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 108 FADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIET--SAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEC--CTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHHHH
Confidence 3444444444443 4899999999986432 11234456778888886 4443 355678888888888887653
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.21 E-value=1.8 Score=31.90 Aligned_cols=70 Identities=11% Similarity=-0.022 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.+.. .++|+++++|+..-..+ ...+.+++++++.|+. +..+. +.-|+|-.+|-+.+++.+.
T Consensus 91 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 91 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETS--AKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 3444444444433 48999999999754322 1244567778888885 44433 4567888888888877664
No 36
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.14 E-value=2.3 Score=31.63 Aligned_cols=71 Identities=13% Similarity=-0.001 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhh----cCCeEEEEecCCCCCc--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKA----YGVNVVVAVNMFATDS--EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT--~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.+.++...+..+.+ .++|+|++.|+-.-.. +-..+...+++...|+. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 87 s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 87 SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIET--SAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEEC--BGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEe--ccCCCCCHHHHHHHHHHHHH
Confidence 35566666666654 4899999999976432 22234456778888885 4433 35667899999888888764
No 37
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=86.11 E-value=1.6 Score=40.14 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHhhcCCeEEEE
Q 042073 26 VEAGCVNLARHIANTKAYGVNVVVA 50 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~~fGvpvVVA 50 (225)
-++.++|+++||+|+..+|+++|+.
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~ 123 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCY 123 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6789999999999999999998764
No 38
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=86.03 E-value=4.5 Score=32.97 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=48.3
Q ss_pred ccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCC---CcHHH-------HHHHHHHHHHcCCCeEEEccccccC-chh
Q 042073 21 ENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFAT---DSEAE-------LNAVRIAAMAAGAFDAVVCSHHAHG-GKG 89 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~---DT~~E-------i~~i~~~c~~~g~~~~avs~~wa~G-G~G 89 (225)
.+-+..++.+..+++.|+..+.+|.+.||..-.+.. +.++. +..+.+.+++.|+. +++-+++..+ --.
T Consensus 74 ~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~~~ 152 (278)
T 1i60_A 74 RDEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVK-IALEFVGHPQCTVN 152 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCTTBSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecCCccchhc
Confidence 344555677788888888888888888776421211 22222 23344445566885 7777665442 111
Q ss_pred hHHHHHHHHHHhhcCCCCcccccC
Q 042073 90 AVDLGIAVQRACENVTQPLKFLYP 113 (225)
Q Consensus 90 a~~LA~~Vv~~~e~~~~~f~~lY~ 113 (225)
..+-+..+++.+. ..++..++|
T Consensus 153 ~~~~~~~l~~~~~--~~~~g~~~D 174 (278)
T 1i60_A 153 TFEQAYEIVNTVN--RDNVGLVLD 174 (278)
T ss_dssp SHHHHHHHHHHHC--CTTEEEEEE
T ss_pred CHHHHHHHHHHhC--CCCeeEEEE
Confidence 2333344444443 234665554
No 39
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=85.85 E-value=1.2 Score=34.51 Aligned_cols=60 Identities=7% Similarity=-0.051 Sum_probs=36.8
Q ss_pred hcCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 42 AYGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 42 ~fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
..++|++|++|+..-..+. ..+.+++++++.|+.-+.+|-.-..|.+|-.++-+.+++.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 4689999999997653322 13456778888898733344333345577777766665543
No 40
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.62 E-value=2.4 Score=32.78 Aligned_cols=70 Identities=11% Similarity=-0.020 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.+.. .++|++|++|+..-..+. ..+.+.+++++.|+. +..+. +.-|+|-.+|-+.+++.+.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 101 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 4445554554443 489999999998654322 245667788888885 44333 4557888888888777664
No 41
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.61 E-value=2.3 Score=32.28 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=40.4
Q ss_pred hcCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 42 AYGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 42 ~fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
..++|+|+++|+-.-..+ -..+.+++++++.|+. +..+ =++=|+|-.+|-+.+++.+..
T Consensus 109 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLES--SAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp ---CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEC--CTTSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEE--ecCCCCCHHHHHHHHHHHHHH
Confidence 358999999999764222 1234567788888885 4433 356689999999998888764
No 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=85.32 E-value=1.8 Score=33.60 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.+++ .++|++|++|+..-..+.+ .+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 109 ~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 109 FNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETS--AKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 4555555655554 4899999999986533211 34456788888885 44443 3557888887777766553
No 43
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.08 E-value=1.2 Score=33.16 Aligned_cols=70 Identities=6% Similarity=0.051 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhh---cCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 29 GCVNLARHIANTKA---YGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 29 G~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
.+.++.+.++.+++ -++|+|++.|+-.-..+ ...+.+++++++.++. +..+ =++=|+|-.+|-+.+++.+
T Consensus 93 s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 93 SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMET--SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEC--CTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 35666666666654 38999999999754222 1235567788888885 4433 3456788888888877655
No 44
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=85.03 E-value=4 Score=34.96 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=76.1
Q ss_pred CCCCCccCCCCCcccc------ccccHHHHHHhH--HHHHHHHHHHhhc--CCeEEEE--ecC-CCCCcHHHHHHHHHHH
Q 042073 3 GGGPQVVAGKPLDHAY------LNENVALVEAGC--VNLARHIANTKAY--GVNVVVA--VNM-FATDSEAELNAVRIAA 69 (225)
Q Consensus 3 GGv~~~~lg~pl~~~l------~~eN~~al~~G~--~NL~~HIeNi~~f--GvpvVVA--IN~-F~~DT~~Ei~~i~~~c 69 (225)
+|+.-..+|-|..+.+ ..-+..||+.|+ ......|+.+|+. .+|+++- .|. |.+.++.++ +.|
T Consensus 43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~----~~~ 118 (268)
T 1qop_A 43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFY----ARC 118 (268)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHH----HHH
T ss_pred CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHH----HHH
Confidence 3455445555443321 223345788886 3444677777764 7897774 363 555655555 456
Q ss_pred HHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-----Hh-----ccCCC--CCC
Q 042073 70 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-----SY-----GASGV--EYS 137 (225)
Q Consensus 70 ~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-----IY-----GA~~V--~~s 137 (225)
.+.|+..+.+.+.=- .+ .+.+++.+.+..-..-++...+.+. +.++.|+. +| |-.+. .++
T Consensus 119 ~~aGadgii~~d~~~------e~-~~~~~~~~~~~g~~~i~l~~p~t~~-~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~ 190 (268)
T 1qop_A 119 EQVGVDSVLVADVPV------EE-SAPFRQAALRHNIAPIFICPPNADD-DLLRQVASYGRGYTYLLSRSGVTGAENRGA 190 (268)
T ss_dssp HHHTCCEEEETTCCG------GG-CHHHHHHHHHTTCEEECEECTTCCH-HHHHHHHHHCCSCEEEESSSSCCCSSSCC-
T ss_pred HHcCCCEEEEcCCCH------HH-HHHHHHHHHHcCCcEEEEECCCCCH-HHHHHHHhhCCCcEEEEecCCcCCCccCCC
Confidence 678997344432211 22 3344455543211223444555554 45666554 22 22233 456
Q ss_pred HHHHHHHHHHHHCCCCCCCeeE
Q 042073 138 EEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 138 ~~A~~~l~~~e~~G~~~lPVCm 159 (225)
+...+.++++.+.- ++|||+
T Consensus 191 ~~~~~~i~~lr~~~--~~pi~v 210 (268)
T 1qop_A 191 LPLHHLIEKLKEYH--AAPALQ 210 (268)
T ss_dssp -CCHHHHHHHHHTT--CCCEEE
T ss_pred chHHHHHHHHHhcc--CCcEEE
Confidence 66677888888763 789987
No 45
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=84.96 E-value=2.8 Score=32.83 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.++. -++|++|++|+-.-..+. ..+.+++++.+.|+. +..+. +.-|+|-.+|-+.+++.+.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 96 FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETS--ALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 4445444554443 579999999997654322 234566778888986 44333 5668888888888887664
No 46
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=84.95 E-value=6.2 Score=32.16 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=59.3
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-cCCCCCc----HHH-------HHHHHHHHHHcCCCeEEEccccc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-NMFATDS----EAE-------LNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~F~~DT----~~E-------i~~i~~~c~~~g~~~~avs~~wa 84 (225)
.+..+|.+..++.+..++++|+-.+.+|.+.||.- ...+.+. ++. +..+.+.+++.|+. +++-++..
T Consensus 62 ~l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~ 140 (254)
T 3ayv_A 62 DLLSPDPEVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVR-LLLENSHE 140 (254)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCE-EEEECSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCE-EEEcCCCC
Confidence 34557778889999999999999999999988764 3333332 222 33455566778996 88888753
Q ss_pred cCchhhHHHHHHHHHHhhcCCCCcccccCC
Q 042073 85 HGGKGAVDLGIAVQRACENVTQPLKFLYPS 114 (225)
Q Consensus 85 ~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~ 114 (225)
. ..+-+..+++.+. .++..++|.
T Consensus 141 ~----~~~~~~~l~~~v~---~~vg~~~D~ 163 (254)
T 3ayv_A 141 P----HPEALRPVLEAHA---GELGFCFDA 163 (254)
T ss_dssp S----SGGGTHHHHHHHT---TSSEEEEEH
T ss_pred C----CHHHHHHHHHhcC---cCEEEEEEc
Confidence 2 2233334444443 358888874
No 47
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.94 E-value=5 Score=30.88 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=45.2
Q ss_pred HHHHH-HHHHHHhhc--CCeEEEEecCCCCCcHHH--------------HHHHHHHHHHcCC-CeEEEccccccCchhhH
Q 042073 30 CVNLA-RHIANTKAY--GVNVVVAVNMFATDSEAE--------------LNAVRIAAMAAGA-FDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 30 ~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT~~E--------------i~~i~~~c~~~g~-~~~avs~~wa~GG~Ga~ 91 (225)
+.++. +.++.++.+ ++|+++++|+-.-..+.+ .+...+++++.|. . +..+. ++=|+|-.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~ 181 (194)
T 2atx_A 105 FQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC-YVECS--ALTQKGLK 181 (194)
T ss_dssp HHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC-EEECC--TTTCTTHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE-EEEee--CCCCCCHH
Confidence 55555 456666665 899999999976533221 2455677887887 4 43333 45578888
Q ss_pred HHHHHHHHHh
Q 042073 92 DLGIAVQRAC 101 (225)
Q Consensus 92 ~LA~~Vv~~~ 101 (225)
+|-+.+++.+
T Consensus 182 ~l~~~l~~~i 191 (194)
T 2atx_A 182 TVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 48
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=84.81 E-value=2.8 Score=33.13 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKA----YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
-+.++...++.++. .++|+||++|+..-..+.+ .+.+.+++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 122 s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 122 SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETS--AATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEEB--TTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 35667777777765 5799999999976533222 35667888888986 44333 4557888887777776654
No 49
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=84.64 E-value=6.3 Score=32.40 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=61.0
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-cCCCC--CcHHHHH----HHHHHHHH-cCCCeEEEccccccCch
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-NMFAT--DSEAELN----AVRIAAMA-AGAFDAVVCSHHAHGGK 88 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~F~~--DT~~Ei~----~i~~~c~~-~g~~~~avs~~wa~GG~ 88 (225)
.+..++.+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++ .+++.+++ .|+. +++-+++..+..
T Consensus 75 ~l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~-l~lEn~~~~~~~ 153 (285)
T 1qtw_A 75 NLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVT-AVIENTAGQGSN 153 (285)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCE-EEEECCCCCTTB
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCE-EEEecCCCCCCc
Confidence 44557777888999999999999999999998752 32322 3444443 34444443 6996 888888654422
Q ss_pred --hhHHHHHHHHHHhhcCCCCcccccCC
Q 042073 89 --GAVDLGIAVQRACENVTQPLKFLYPS 114 (225)
Q Consensus 89 --Ga~~LA~~Vv~~~e~~~~~f~~lY~~ 114 (225)
...+-+..+++.+. +..++.+++|.
T Consensus 154 ~~~~~~~~~~l~~~v~-~~~~~g~~~D~ 180 (285)
T 1qtw_A 154 LGFKFEHLAAIIDGVE-DKSRVGVCIDT 180 (285)
T ss_dssp CCSSHHHHHHHHHHCS-CGGGEEEEEEH
T ss_pred ccCCHHHHHHHHHhhc-CccceEEEEEh
Confidence 13344555566552 12347777764
No 50
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.63 E-value=1.2 Score=34.75 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKAY---GVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~f---GvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++++ ++|+++++|+-.-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 111 FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETS--AKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECB--TTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHHH
Confidence 45556666666553 89999999997543211 234567888888885 44333 4568888888888887664
No 51
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=84.14 E-value=6 Score=34.78 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 44 GVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 44 GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.|+++++|+-.-....+++.+.+++.+.+.+ +..+. +.=|+|-.+|-+.+.+.+..
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~iS--A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLN-PIKIS--ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC-CEECB--TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHhcCCC-eEEEe--CCCCcCHHHHHHHHHHHHHH
Confidence 89999999999888888888888888888886 33332 45689999999988887753
No 52
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=84.08 E-value=3.4 Score=37.13 Aligned_cols=70 Identities=14% Similarity=0.037 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhcCC-eEEEEecCCCCCcHHHHHHHH----HHHHHc---CCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTKAYGV-NVVVAVNMFATDSEAELNAVR----IAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGv-pvVVAIN~F~~DT~~Ei~~i~----~~c~~~---g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+++...|+..++..|+ |+||++|+-..-++++++... ++.++. +++ +.... +.=|+|-.+|-+.+.+.+
T Consensus 114 ~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii~vS--A~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 114 QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVP-IIPVS--ALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECB--TTTTBSHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCE-EEEEE--CCCCcChHHHHHHHHHhC
Confidence 5678899999998887 899999998766666554433 333322 444 44444 445788888888888766
Q ss_pred h
Q 042073 102 E 102 (225)
Q Consensus 102 e 102 (225)
.
T Consensus 191 ~ 191 (403)
T 3sjy_A 191 K 191 (403)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=83.93 E-value=2.7 Score=31.10 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHH--HHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAE--LNAVRIAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~-g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++.+.++.+.+ .++|+++++|+-.-..+.+ .+.+.+++++. +.. +.. .=++=|+|-.+|-+.+.+.+
T Consensus 90 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 90 FNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCA-FLE--SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCE-EEE--CBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCc-EEE--ecCCCCCCHHHHHHHHHHHH
Confidence 4455555554443 4899999999976533221 34556777776 554 433 33566888888888877765
No 54
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=83.70 E-value=1.7 Score=34.83 Aligned_cols=71 Identities=10% Similarity=-0.071 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.+.++.++. .++|+||++|+..-..+.+ .+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 101 ~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 101 YENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETS--ALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--CC-CCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 4555555666654 3899999999975432211 24456788888885 54443 45678888888888887754
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=83.43 E-value=2.3 Score=31.68 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++.+.++.+++ .++|+++++|+..-..+ ...+.+.+++++.|+. +..+ =++=|+|-.+|-+.+++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 94 FQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHT--SAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp HHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEE--BTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHHH
Confidence 4455555554443 58999999999654322 1234567788888885 4332 2455788888888877765
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=83.31 E-value=2.2 Score=32.09 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=46.2
Q ss_pred HHHHHHHHHHH----hhcCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANT----KAYGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi----~~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.+.++.+ ...++|+++++|+..-..+.+ .+...+++...++. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 96 FNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEAS--AKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHHHHHH
Confidence 44555555444 346899999999975433222 24456778888885 44333 45678888888888877653
No 57
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=83.29 E-value=5.7 Score=31.77 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCC--CCcHHHHHHHHHHHHHcCC-CeEEEccccccCc
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFA--TDSEAELNAVRIAAMAAGA-FDAVVCSHHAHGG 87 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~--~DT~~Ei~~i~~~c~~~g~-~~~avs~~wa~GG 87 (225)
+....+-|+.+++.|+++.+-..-.+ .|+.+|++.+.+++++.|. ..+.+.....-|+
T Consensus 146 ~~~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3c8f_A 146 NHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGK 206 (245)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSH
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccCh
Confidence 45566667777778998776544343 5889999999999999994 4355555555454
No 58
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=83.27 E-value=1.6 Score=32.72 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHh---hcCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTK---AYGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~---~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++.+.++.++ ..++|++|++|+..-..+.+ .+...+++++.++. +..+. ++-|+|-.+|-+.+.+.+
T Consensus 102 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 102 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETS--AKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEB--TTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 444555555544 35899999999975432222 34556777888885 44333 556788888888877755
No 59
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=83.11 E-value=3.4 Score=32.42 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCC--CCcHHHHHHHHHHHHHc-CC-CeEEEccccccCc
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFA--TDSEAELNAVRIAAMAA-GA-FDAVVCSHHAHGG 87 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~--~DT~~Ei~~i~~~c~~~-g~-~~~avs~~wa~GG 87 (225)
+....+-|+.+++.|+++.|...-.+ .|+.+|++.+.+++++. |+ ..+.+.....-|.
T Consensus 78 ~~~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~ 139 (182)
T 3can_A 78 NELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGK 139 (182)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCH
Confidence 35555566666677888877765554 38999999999999999 97 5566665444443
No 60
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.01 E-value=2.8 Score=32.73 Aligned_cols=70 Identities=9% Similarity=0.086 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcH-HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSE-AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~-~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++. .++|++|++|+-.-... ...+.+.+++++.|+. +..+. +.=|+|-.+|-+.+.+.+.
T Consensus 108 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 108 FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 4555555655554 38999999999764211 1123456677788886 44443 4557787777776666554
No 61
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=82.91 E-value=5.8 Score=31.24 Aligned_cols=68 Identities=15% Similarity=-0.017 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCcHHHH----HHHHHHHHHc-----CCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 35 RHIANTKAYGVNVVVAVNMFATDSEAEL----NAVRIAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~F~~DT~~Ei----~~i~~~c~~~-----g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.++..++|+++++|+-.-.++.++ +.+++.+.+. +.. +.+-..=++-|+|-.+|-+.+.+.+..
T Consensus 135 ~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 135 RMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK-LTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC-EEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC-CeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 3456677799999999999876666664 3344444442 121 223334467789999999999888753
No 62
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.55 E-value=4.2 Score=30.11 Aligned_cols=69 Identities=19% Similarity=0.096 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++.+.++.++. -++|++++.|+.....+.+ .+.+.+++++.++. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 94 FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETS--AKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHH
Confidence 4455555555544 4789999999976533222 34566778888885 44333 455788888888877765
No 63
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=82.46 E-value=1.2 Score=36.78 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEcccc
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHH 83 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~w 83 (225)
+..+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-+++
T Consensus 88 ~~~~~~~i~~A~~lGa~~v~~~---p~--~~~l~~l~~~a~~~gv~-l~lEn~~ 135 (257)
T 3lmz_A 88 EEEIDRAFDYAKRVGVKLIVGV---PN--YELLPYVDKKVKEYDFH-YAIHLHG 135 (257)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE---EC--GGGHHHHHHHHHHHTCE-EEEECCC
T ss_pred HHHHHHHHHHHHHhCCCEEEec---CC--HHHHHHHHHHHHHcCCE-EEEecCC
Confidence 4577888888888888888852 32 45677777888888885 7777774
No 64
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=82.37 E-value=4.3 Score=34.48 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCeEE-EEec---CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchh
Q 042073 33 LARHIANTKAYGVNVV-VAVN---MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKG 89 (225)
Q Consensus 33 L~~HIeNi~~fGvpvV-VAIN---~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~G 89 (225)
.++.++.|+..|.++| +.++ .|..+.-+.++.+.++|.++|+. +.+.-|...|+.+
T Consensus 33 ~~~~~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-Vild~H~~~~~~~ 92 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMV-AVVEVHDATGRDS 92 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred hHHHHHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 3578899999999999 7776 67888899999999999999996 8887777666553
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.26 E-value=2.2 Score=31.63 Aligned_cols=69 Identities=6% Similarity=-0.111 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhh--cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTKA--YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~~--fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++...++.++. .++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+.+.+
T Consensus 93 ~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 93 FEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTS--VKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--cCCCCCHHHHHHHHHHHH
Confidence 4455555555554 489999999997542211 134556788888885 44333 455788888888877765
No 66
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=82.24 E-value=4.1 Score=35.91 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHhhcCCeEEEEecCCC
Q 042073 26 VEAGCVNLARHIANTKAYGVNVVVAVNMFA 55 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~~fGvpvVVAIN~F~ 55 (225)
.++.+.++++.+++++.+|+++|+. |-++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~-n~~p 118 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY-SFKP 118 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE-CCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-eCCC
Confidence 4667899999999999999998765 5443
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=82.20 E-value=2.9 Score=32.56 Aligned_cols=70 Identities=13% Similarity=-0.048 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.++. .+.|+|+++|+..-..+. ..+.++++++..|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 96 FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEAS--AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 4556666666655 489999999997643321 234566778888885 44433 4557888777777766553
No 68
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=82.14 E-value=12 Score=31.05 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=65.9
Q ss_pred cccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEec--C-CCCCcHHH-------HHHHHHHHHHcCCCeEEEccccccCc
Q 042073 18 YLNENVALVEAGCVNLARHIANTKAYGVNVVVAVN--M-FATDSEAE-------LNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 18 l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN--~-F~~DT~~E-------i~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
+..++.+..++.+..+++.|+..+.+|.+.||.-- . +..++++. +..+.+.+++.|+. +++-+++..-.
T Consensus 95 l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~ 173 (295)
T 3cqj_A 95 LGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVT-LAMEIMDYPLM 173 (295)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCSSGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeeCCCccc
Confidence 34466777888999999999999999999988531 1 12234433 44555667788996 88887753211
Q ss_pred hhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh
Q 042073 88 KGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR 127 (225)
Q Consensus 88 ~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~ 127 (225)
...+-+..+++.+. ..++..++|. ..++.+=|++...
T Consensus 174 -~~~~~~~~l~~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 216 (295)
T 3cqj_A 174 -NSISKALGYAHYLN--NPWFQLYPDIGNLSAWDNDVQMELQAGIG 216 (295)
T ss_dssp -CSHHHHHHHHHHHC--CTTEEEECBHHHHHSSSCCHHHHHHHTGG
T ss_pred -CCHHHHHHHHHhcC--CCCeEEEeccchHhhcCCCHHHHHHHhcc
Confidence 12333445555553 2356666653 3455566666544
No 69
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.98 E-value=3.2 Score=30.92 Aligned_cols=71 Identities=14% Similarity=0.033 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhhc----CCeEEEEecCCCCCc--HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKAY----GVNVVVAVNMFATDS--EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~f----GvpvVVAIN~F~~DT--~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.+.++...+..+.+. ++|+++++|+-.-.. +-..+...+++++.|+. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 90 s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 90 SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIET--SAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEe--cCccCCCHHHHHHHHHHHHH
Confidence 455666666666553 899999999976432 12234556788888885 4433 35668898888888887764
No 70
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=81.97 E-value=0.66 Score=39.60 Aligned_cols=86 Identities=17% Similarity=0.273 Sum_probs=52.9
Q ss_pred HHHHHhhcCCeEEEEecCCCCCcHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCC
Q 042073 36 HIANTKAYGVNVVVAVNMFATDSEAELN-AVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPS 114 (225)
Q Consensus 36 HIeNi~~fGvpvVVAIN~F~~DT~~Ei~-~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~ 114 (225)
.+..++.+++|+|+++|+..--...++. .+.++++..|++ +..+. +.-|+|-.+|-+.+.+.+... ......|
T Consensus 104 ~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~S--A~~g~gi~el~~~i~~~~~~~-~~~~~~~-- 177 (274)
T 3i8s_A 104 LTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLV--STRGRGIEALKLAIDRYKANE-NVELVHY-- 177 (274)
T ss_dssp HHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECC--CGGGHHHHHHHHHHHTCCCCC-CCCCCCC--
T ss_pred HHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEE--cCCCCCHHHHHHHHHHHHhcC-CCcccCC--
Confidence 3445566799999999996321111111 245667788987 54433 567899999988888876532 1122223
Q ss_pred CCCHHHHHHHHHh
Q 042073 115 DVSIKEKIDTIAR 127 (225)
Q Consensus 115 ~~~i~eKI~~IA~ 127 (225)
...+++.+..|..
T Consensus 178 ~~~l~~~~~~i~~ 190 (274)
T 3i8s_A 178 AQPLLNEADSLAK 190 (274)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3356777776665
No 71
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=81.92 E-value=5.7 Score=29.98 Aligned_cols=57 Identities=19% Similarity=0.087 Sum_probs=39.6
Q ss_pred cCCeEEEEecCCCCCc-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDS-EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT-~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++|++|++|+..-.. ....+.+.+++++.|+. +..+. +.-|+|-.+|-+.+++.+.
T Consensus 108 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETS--AKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 5899999999976422 22234556777888886 44333 4567888888888887765
No 72
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=81.80 E-value=8.9 Score=31.49 Aligned_cols=96 Identities=7% Similarity=0.122 Sum_probs=60.3
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-cCCCC-CcHHHH----HHHHHHHHH-cCCCeEEEccccccCch-
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-NMFAT-DSEAEL----NAVRIAAMA-AGAFDAVVCSHHAHGGK- 88 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~F~~-DT~~Ei----~~i~~~c~~-~g~~~~avs~~wa~GG~- 88 (225)
.+..+|.+..++.+..+++.|+-.+.+|.+.||.- ..... ++++.+ +.+++.|++ .|+. +++-+++..+..
T Consensus 75 ~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~~~~~ 153 (287)
T 2x7v_A 75 NLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVV-ILLENVSQKGGNI 153 (287)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCE-EEEECCCCCTTEE
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCE-EEEeCCCCCCCcc
Confidence 34456777788899999999999999999998752 22333 334444 344555544 6886 888888654331
Q ss_pred -hhHHHHHHHHHHhhcCCCCcccccCC
Q 042073 89 -GAVDLGIAVQRACENVTQPLKFLYPS 114 (225)
Q Consensus 89 -Ga~~LA~~Vv~~~e~~~~~f~~lY~~ 114 (225)
...+-+..+++.+.. +.++..+||.
T Consensus 154 ~~~~~~~~~l~~~~~~-~~~vg~~~D~ 179 (287)
T 2x7v_A 154 GYKLEQLKKIRDLVDQ-RDRVAITYDT 179 (287)
T ss_dssp CSSHHHHHHHHHHCSC-GGGEEEEEEH
T ss_pred CCCHHHHHHHHHhcCC-CCCeEEEEEh
Confidence 134444555555531 1347777763
No 73
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=81.71 E-value=0.95 Score=38.97 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=55.7
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHHH---HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCC-CCccccc
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAEL---NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT-QPLKFLY 112 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~Ei---~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~-~~f~~lY 112 (225)
+..+..+|+|+|+++|+. |-.++- ..+.++++.+|++ +..+ =+.=|+|-.+|-+.+++.+.... ..++.-|
T Consensus 100 ~~~l~~~~~p~ilv~NK~--Dl~~~~~~~~~~~~l~~~lg~~-vi~~--SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~ 174 (272)
T 3b1v_A 100 TTQLIETGIPVTIALNMI--DVLDGQGKKINVDKLSYHLGVP-VVAT--SALKQTGVDQVVKKAAHTTTSTVGDLAFPIY 174 (272)
T ss_dssp HHHHHHTCSCEEEEEECH--HHHHHTTCCCCHHHHHHHHTSC-EEEC--BTTTTBSHHHHHHHHHHSCTTTCCSCCCCCC
T ss_pred HHHHHhcCCCEEEEEECh--hhCCcCCcHHHHHHHHHHcCCC-EEEE--EccCCCCHHHHHHHHHHHHhhccCCCccCCC
Confidence 444556899999999985 221110 1245677788987 5443 35668999999999988775322 2233345
Q ss_pred CCCCCHHHHHHHHHh-H
Q 042073 113 PSDVSIKEKIDTIAR-S 128 (225)
Q Consensus 113 ~~~~~i~eKI~~IA~-I 128 (225)
...+++-|+.|.. +
T Consensus 175 --~~~~e~~i~~~~~~~ 189 (272)
T 3b1v_A 175 --DDRLEAAISQILEVL 189 (272)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHH
Confidence 3468888888877 5
No 74
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.16 E-value=4.8 Score=34.88 Aligned_cols=61 Identities=23% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCcHHH---HHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDSEAE---LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT~~E---i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
+|.+-+..++..++|+|+++|+-.-.++++ ++.+.+++++.|+. +...+ ++-|+|-.+|-+
T Consensus 98 ~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~-~~~~S--A~~g~gi~~L~~ 161 (302)
T 2yv5_A 98 LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD-VLKVS--AKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHHh
Confidence 566667777779999999999977545542 66677788888885 44332 466777666543
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=81.00 E-value=4.3 Score=30.98 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcH-HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSE-AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~-~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.+.++.+++ .++|+++++|+-.-... ...+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 103 ~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 103 FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEAS--AKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEec--CCCCCCHHHHHHHHHHHHHh
Confidence 4566666777765 37999999999765221 1234566788888885 54443 45588988888888887754
No 76
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=80.68 E-value=3.8 Score=31.59 Aligned_cols=70 Identities=13% Similarity=-0.001 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++. .++|++|++|+..-..+. ..+.+++++.+.|+. +..+. +.=|+|-.+|-+.+++.+.
T Consensus 113 ~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 113 YAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETS--ALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp HHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 4555666666654 489999999997543221 234567788888885 44433 4567888888887777653
No 77
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=80.56 E-value=3.4 Score=37.15 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhcCCeE-EEEec-CCCCCcHHHHH----HHHHHHHHcC---CCeEEE--ccccc-cCchhhHHHHHHH
Q 042073 30 CVNLARHIANTKAYGVNV-VVAVN-MFATDSEAELN----AVRIAAMAAG---AFDAVV--CSHHA-HGGKGAVDLGIAV 97 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpv-VVAIN-~F~~DT~~Ei~----~i~~~c~~~g---~~~~av--s~~wa-~GG~Ga~~LA~~V 97 (225)
++...+|+..++.+|+|. ||++| +-.. .++.++ .+++++++.+ ++ +.. ...+. .=|+|-.+|-+.+
T Consensus 97 ~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~-ii~~~~SA~~~~~g~gi~~L~~~l 174 (370)
T 2elf_A 97 DAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWE-CISLNTNKSAKNPFEGVDELKARI 174 (370)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCE-EEECCCCTTSSSTTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceE-EEecccccccCcCCCCHHHHHHHH
Confidence 456788999999999999 99999 8876 454443 3455555444 32 433 32222 0077877777777
Q ss_pred HHHhh
Q 042073 98 QRACE 102 (225)
Q Consensus 98 v~~~e 102 (225)
.+.+.
T Consensus 175 ~~~~~ 179 (370)
T 2elf_A 175 NEVAE 179 (370)
T ss_dssp HHHHH
T ss_pred Hhhcc
Confidence 76654
No 78
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=80.54 E-value=1.9 Score=33.72 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHh---hcCCeEEEEecCCCCCcHHH--HHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTK---AYGVNVVVAVNMFATDSEAE--LNAVRIAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~---~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~-g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++ ..++|++|++|+-.-..+.+ .+.+++++++. +.. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 114 ~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 114 FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMR-FCEAS--AKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 334444444444 35899999999975433222 23456777764 554 44333 6778998888888877654
No 79
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=80.50 E-value=5.5 Score=36.99 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHH----HHHHHHHc----CCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNA----VRIAAMAA----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~----i~~~c~~~----g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.-..|+..++.+|+|.||++|+-..-++++++. +++++++. ++. +..+..+ =|+|-.+|-+.+.+.+.
T Consensus 112 ~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-ii~vSA~--~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 112 TQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS-IIPISAK--TGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC-EEECCTT--TCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce-EEEEECc--CCCCHHHHHHHHHHhhc
Confidence 3456788888889999999999987655555543 44555555 454 5544444 47888888888888664
No 80
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.15 E-value=3.5 Score=31.91 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++..-++.++. -++|+|+++|+-.-..+ ...+.+.++++..|+. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 111 FNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEAS--AKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHHH
Confidence 3444444555544 58999999999764222 2234556778888885 44333 56788999988888887643
No 81
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=80.03 E-value=7.6 Score=31.99 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=79.6
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-----cC--CC--CCcHHHHH-------HHHHHHHHcCCCeEEEc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-----NM--FA--TDSEAELN-------AVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-----N~--F~--~DT~~Ei~-------~i~~~c~~~g~~~~avs 80 (225)
.+..++.+.-++.+..+++.|+..+.+|.+.||.. .+ |. .++++.++ .+.+.+++.|+. +++-
T Consensus 74 ~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE 152 (290)
T 2qul_A 74 DFASPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGII-YALE 152 (290)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCE-EEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEE
Confidence 34556777788899999999999999999999842 22 32 24454443 344556778996 8887
Q ss_pred ccccc-Cc-hhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh-Hhc------------cCCCCCCHH
Q 042073 81 SHHAH-GG-KGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR-SYG------------ASGVEYSEE 139 (225)
Q Consensus 81 ~~wa~-GG-~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~-IYG------------A~~V~~s~~ 139 (225)
++... +. -...+-+..+++.+. ..++..++|. ..++.+=|++... |.. -..+.
T Consensus 153 n~~~~~~~~~~~~~~~~~l~~~~~--~~~~g~~~D~~h~~~~g~d~~~~l~~~~~~i~~vH~~D~~~~~~G~G~id---- 226 (290)
T 2qul_A 153 VVNRFEQWLCNDAKEAIAFADAVD--SPACKVQLDTFHMNIEETSFRDAILACKGKMGHFHLGEANRLPPGEGRLP---- 226 (290)
T ss_dssp CCCTTTCSSCCSHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSCHHHHHHHTTTTEEEEEECCTTSCCTTSSCSC----
T ss_pred eCccccccccCCHHHHHHHHHHcC--CCCEEEEEEchhhhhcCCCHHHHHHHHHhheeEEEEccCCCCCCCCCCcC----
Confidence 76421 11 112333444555553 2346666654 3456666666554 321 12222
Q ss_pred HHHHHHHHHHCCCCCCCeeE
Q 042073 140 AEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 140 A~~~l~~~e~~G~~~lPVCm 159 (225)
-..-++.+++.||+. |+++
T Consensus 227 ~~~~~~~L~~~gy~g-~~~l 245 (290)
T 2qul_A 227 WDEIFGALKEIGYDG-TIVM 245 (290)
T ss_dssp HHHHHHHHHHTTCCS-CEEE
T ss_pred HHHHHHHHHHhCCCc-eEEE
Confidence 344566677777754 4444
No 82
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=80.03 E-value=4.9 Score=31.33 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--------HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--------ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--------Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
+.++.+.++.++. .++|++|++|+-.-..+. ..+...+++++.|+. +..+. ++=|+|-.+|-+.++
T Consensus 116 ~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 116 FLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETS--AKDGSNIVEAVLHLA 192 (199)
T ss_dssp HHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEee--CCCCCCHHHHHHHHH
Confidence 3445555555544 489999999997542111 123456778888885 54433 456788888888888
Q ss_pred HHhh
Q 042073 99 RACE 102 (225)
Q Consensus 99 ~~~e 102 (225)
+.+.
T Consensus 193 ~~i~ 196 (199)
T 2p5s_A 193 REVK 196 (199)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7664
No 83
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=79.79 E-value=8.3 Score=30.12 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=44.5
Q ss_pred hHHHH-HHHHHHHhhc--CCeEEEEecCCCCCcHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 29 GCVNL-ARHIANTKAY--GVNVVVAVNMFATDSEAE--------------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 29 G~~NL-~~HIeNi~~f--GvpvVVAIN~F~~DT~~E--------------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
.+.++ .+.++.++++ ++|++|++|+-.-..+.+ .+...+++++.|...+..+. ++=|+|-.
T Consensus 111 s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~ 188 (201)
T 2gco_A 111 SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS--AKTKEGVR 188 (201)
T ss_dssp HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee--CCCCCCHH
Confidence 45566 4555566665 999999999975432211 12455677777773243333 45578888
Q ss_pred HHHHHHHHHh
Q 042073 92 DLGIAVQRAC 101 (225)
Q Consensus 92 ~LA~~Vv~~~ 101 (225)
+|-+.+++.+
T Consensus 189 ~l~~~i~~~~ 198 (201)
T 2gco_A 189 EVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 84
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=79.69 E-value=0.87 Score=38.67 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=51.3
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCC
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAEL-NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSD 115 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~Ei-~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~ 115 (225)
...++.+++|+|+++|+..--...++ ..+.++++.+|++ +..+. +.-|+|-.+|-+.+.+. +. +.. .|+.
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~~~-~~-~~~---~y~~- 173 (256)
T 3iby_A 103 TSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ--AHKNIGIPALQQSLLHC-SQ-KIK---PLKL- 173 (256)
T ss_dssp HHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB--GGGTBSHHHHHHHHHTC-CS-CCC---CCCC-
T ss_pred HHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHhh-hc-Ccc---cCCH-
Confidence 34456689999999999632111111 1234566778987 54433 56689999999999887 43 222 4544
Q ss_pred CCHHHHHHHHHh
Q 042073 116 VSIKEKIDTIAR 127 (225)
Q Consensus 116 ~~i~eKI~~IA~ 127 (225)
.+++.|..|..
T Consensus 174 -~~e~~i~~i~~ 184 (256)
T 3iby_A 174 -SLSVAAQQILN 184 (256)
T ss_dssp -CCCHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 46666666655
No 85
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=79.08 E-value=3 Score=32.83 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHh---hcCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTK---AYGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~---~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++ ..++|++|++|+..-..+.+ .+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 113 YNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETS--ALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 344555454444 35899999999976432222 24556788888885 44333 4557888887777776554
No 86
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=78.89 E-value=3.9 Score=32.09 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=47.7
Q ss_pred hHHHHH-HHHHHHhhc--CCeEEEEecCCCCCcHHH----------HHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 042073 29 GCVNLA-RHIANTKAY--GVNVVVAVNMFATDSEAE----------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 29 G~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT~~E----------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
.+.++. ..++.++.+ ++|+||++|+..-..+.+ .+.+.+++++.|...+..+. ++=|+|-.+|-+
T Consensus 95 s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~ 172 (212)
T 2j0v_A 95 SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS--SKTQQNVKAVFD 172 (212)
T ss_dssp HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc--CCCCCCHHHHHH
Confidence 355554 456666665 899999999965322211 34456777888863244333 456889999988
Q ss_pred HHHHHhhc
Q 042073 96 AVQRACEN 103 (225)
Q Consensus 96 ~Vv~~~e~ 103 (225)
.+++.+.+
T Consensus 173 ~l~~~~~~ 180 (212)
T 2j0v_A 173 TAIKVVLQ 180 (212)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 88887754
No 87
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=78.74 E-value=5.9 Score=29.60 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhhc--CCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKAY--GVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~f--GvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
-+.++.+.++.+++. ++|+||++|+..-..+ .+.+...+++...|+. +..+. +.=|+|-.+|-+.+.+.+.
T Consensus 96 s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 96 SFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETS--AKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 355555556655543 6999999999754322 1234567788888886 44333 5567888888888777664
No 88
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=78.73 E-value=4.5 Score=30.31 Aligned_cols=57 Identities=9% Similarity=-0.078 Sum_probs=38.1
Q ss_pred cCCeEEEEecCCCCC-cHHHHHHHHHHHH-HcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATD-SEAELNAVRIAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~D-T~~Ei~~i~~~c~-~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++|+++++|+..-. .....+.+.++++ ..++. +..+. ++-|+|-.+|-+.+++.+-
T Consensus 115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP-YFETS--AKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCcccccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 789999999997642 1222344566776 44565 54443 4568898888888887664
No 89
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=78.61 E-value=6.3 Score=31.00 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++.+.++.+++ .++|++|++|+-.-..+. ..+.+++++++.|+..+..+. ++=|+|-.+|-+.+++.+.+
T Consensus 117 ~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 117 FLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS--AKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 4555556666654 579999999997653321 234567788888883243333 46678888888888877653
No 90
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=78.30 E-value=2.9 Score=31.78 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=41.2
Q ss_pred HHHHhhcCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 37 IANTKAYGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+......++|++|++|+..-..+ -..+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 108 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 108 ARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETS--ALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEec--CCCCCCHHHHHHHHHHHHH
Confidence 34444578999999999764322 1224456788888885 54433 4567888887777776554
No 91
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=78.25 E-value=6 Score=34.09 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=34.7
Q ss_pred HHHHHHHhhc--CCeEEEEecCCCCCcHHHH--------HHHHHHHHHcCC--CeEEEccccc
Q 042073 34 ARHIANTKAY--GVNVVVAVNMFATDSEAEL--------NAVRIAAMAAGA--FDAVVCSHHA 84 (225)
Q Consensus 34 ~~HIeNi~~f--GvpvVVAIN~F~~DT~~Ei--------~~i~~~c~~~g~--~~~avs~~wa 84 (225)
.+.+..++++ ++|++|++|+-.-..+++. +.+.+++++.|+ ..+..+..|.
T Consensus 103 ~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 103 AKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred HHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 3345555543 8999999999875553332 566788998883 2377777777
No 92
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=78.24 E-value=7.5 Score=34.64 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhc-----CCeEEEEecCCCCCcHHHHHHHHHHHHHcC--CCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKAY-----GVNVVVAVNMFATDSEAELNAVRIAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~f-----GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g--~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++....+.++.| +.|++|++|+-....++| .+.+++++.+ .. + -..=+.=|+|-.+|-+.+.+.+.
T Consensus 255 ~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e--~~~~l~~~l~~~~~-v--~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 255 YDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE--NLEAFKEKLTDDYP-V--FPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH--HHHHHHHHCCSCCC-B--CCCSSCCSSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH--HHHHHHHHhhcCCC-E--EEEECCCCcCHHHHHHHHHHHHh
Confidence 34455555555554 799999999986644432 3455555555 33 2 23335568899999999999987
Q ss_pred cCCCCcccccCCCC
Q 042073 103 NVTQPLKFLYPSDV 116 (225)
Q Consensus 103 ~~~~~f~~lY~~~~ 116 (225)
+. .-.++|+.++
T Consensus 330 ~~--~~~~~y~~e~ 341 (342)
T 1lnz_A 330 NT--PEFPLYDEEE 341 (342)
T ss_dssp SC--CCCCSSCSCC
T ss_pred hC--ccccCCCccc
Confidence 43 2346787653
No 93
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=78.23 E-value=3.6 Score=30.94 Aligned_cols=70 Identities=14% Similarity=-0.043 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhc-----CCe-EEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTKAY-----GVN-VVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~~f-----Gvp-vVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++...++.++.+ +.| +|++.|+..-..+.+ .+.+.+++++.|+. +..+. ++=|+|-.+|-+.+++.+
T Consensus 95 ~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 95 FENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVS--AKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp HHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 34444444444442 667 789999975432111 24556778888885 44433 455789888888888876
Q ss_pred h
Q 042073 102 E 102 (225)
Q Consensus 102 e 102 (225)
-
T Consensus 172 ~ 172 (178)
T 2hxs_A 172 L 172 (178)
T ss_dssp T
T ss_pred H
Confidence 4
No 94
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.52 E-value=9.1 Score=32.96 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcC--CCeEEEccccccCchhhHHHHH
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAG--AFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g--~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
.+|.+.+..++..++|+|+++|+-.-..+.+++.+.++++..+ +. +..+. ++=|+|-.+|-+
T Consensus 102 ~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~-~~~~S--Aktg~gv~~lf~ 165 (301)
T 1u0l_A 102 YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP-IVKTS--AKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCc-EEEEE--CCCCcCHHHHHH
Confidence 4566667667778999999999987655666656677777666 65 43333 556677555543
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.50 E-value=7 Score=29.94 Aligned_cols=71 Identities=7% Similarity=-0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.+.+..+.+ .+.|+++++|+-.-..+.+.+.+.+... +.++. + -+.=++-|+|-.+|-+.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~--~~~Sa~~g~gi~~l~~~l~~~ 175 (187)
T 1zj6_A 99 ISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-I--QACCALTGEGLCQGLEWMMSR 175 (187)
T ss_dssp HHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE-E--EECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcE-E--EEccCCCCcCHHHHHHHHHHH
Confidence 4455555555543 5899999999976433212223333332 23432 3 333466789999999999988
Q ss_pred hhc
Q 042073 101 CEN 103 (225)
Q Consensus 101 ~e~ 103 (225)
+..
T Consensus 176 ~~~ 178 (187)
T 1zj6_A 176 LKI 178 (187)
T ss_dssp HCC
T ss_pred HHH
Confidence 754
No 96
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=77.38 E-value=4.2 Score=30.85 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeE-----EEccccccCchhhHHHHHHHHHHhhc
Q 042073 38 ANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDA-----VVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 38 eNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~-----avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++..++|+++++|+-.-..+. -+.+.+++++.|.. + .+-+.=++-|+|-.+|-+.+++.+.+
T Consensus 116 ~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 116 QFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVP-LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCC-GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhh-hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 44556899999999997654332 33456777788874 2 11233356788989988888887754
No 97
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.36 E-value=3 Score=32.42 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=37.6
Q ss_pred cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCch-hhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGK-GAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~-Ga~~LA~~Vv~~~e 102 (225)
.++|++++.|+..-..+. ..+.+.+++++.++. +..+. ++-|+ |-.+|-+.+++.+.
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECS--ACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECC--TTTCTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEEC--CCcCCcCHHHHHHHHHHHHH
Confidence 589999999997543221 134456777788885 44433 44566 77788777777654
No 98
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=77.31 E-value=4.4 Score=31.65 Aligned_cols=71 Identities=15% Similarity=-0.004 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++...++.+.. .++|+|+++|+..-..+.+ .+...+++++.|+. +.. .=++=|+|-.+|-+.+++.+.+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~--~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 111 FQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FME--SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEE--CCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEE--EeCCCCCCHHHHHHHHHHHHHh
Confidence 4455555555544 3899999999986432221 23456778888885 443 3356688988888888887754
No 99
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=77.28 E-value=22 Score=28.83 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=64.8
Q ss_pred cccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEec-CCC---CCcHH-------HHHHHHHHHHHcCCCeEEEccccc--
Q 042073 18 YLNENVALVEAGCVNLARHIANTKAYGVNVVVAVN-MFA---TDSEA-------ELNAVRIAAMAAGAFDAVVCSHHA-- 84 (225)
Q Consensus 18 l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN-~F~---~DT~~-------Ei~~i~~~c~~~g~~~~avs~~wa-- 84 (225)
+..++.+.-++.+..+++.|+..+.+|.+.||.-- .++ .++++ -++.+.+.+++.|+. +++-++..
T Consensus 70 ~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~ 148 (275)
T 3qc0_A 70 FPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVP-LAIEPLHPMY 148 (275)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEECCCCGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeECCCcc
Confidence 44467777788899999999999999999988753 343 23332 345556667788997 88876522
Q ss_pred --cC-chhhHHHHHHHHHHhhcCCCCcccccCC-----CCCHHHHHHHHH
Q 042073 85 --HG-GKGAVDLGIAVQRACENVTQPLKFLYPS-----DVSIKEKIDTIA 126 (225)
Q Consensus 85 --~G-G~Ga~~LA~~Vv~~~e~~~~~f~~lY~~-----~~~i~eKI~~IA 126 (225)
.+ --...+-+.++++.+. + ++..++|. +.++.+-|+++.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~~--~-~vg~~~D~~h~~~~~d~~~~l~~~~ 195 (275)
T 3qc0_A 149 AADRACVNTLGQALDICETLG--P-GVGVAIDVYHVWWDPDLANQIARAG 195 (275)
T ss_dssp TTTTBSCCCHHHHHHHHHHHC--T-TEEEEEEHHHHTTCTTHHHHHHHHH
T ss_pred cCCccccCCHHHHHHHHHHhC--c-ccEEEEEhhhheeCCCHHHHHHHcC
Confidence 11 1112333444555553 3 55555432 245666666665
No 100
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=77.08 E-value=5.5 Score=34.12 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=38.0
Q ss_pred HHhHHHHHHHHHHHhhcCCeEEEEecCCCC-CcHHHH-------HHHHHHHHHcCCCeEEEccccc
Q 042073 27 EAGCVNLARHIANTKAYGVNVVVAVNMFAT-DSEAEL-------NAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 27 ~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~-DT~~Ei-------~~i~~~c~~~g~~~~avs~~wa 84 (225)
++....+++.|+-.+.+|.+.||. --++. .+++++ ..+.+.|++.|+. +++-++..
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 173 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQ-PSLPRIENEDDAKVVSEIFNRAGEITKKAGIL-WGYHNHSN 173 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCE-EEEECCSG
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCcc
Confidence 445678899999999999999985 32222 344443 3455567788996 88776653
No 101
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=77.07 E-value=5.9 Score=30.06 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHH----HHHHHHHHHHcC-CCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAE----LNAVRIAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~E----i~~i~~~c~~~g-~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
++.++.+++|+++++|+..--++++ .+.+++++...+ +. +.. .=++-|+|-.+|-+.+.+.+.
T Consensus 126 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 126 VEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT-IIP--TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC-EEE--CCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc-eEE--EecCCCCCHHHHHHHHHHHhh
Confidence 4455667999999999976433333 345566666544 33 333 335678898888888888764
No 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=76.44 E-value=5.2 Score=31.50 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=45.1
Q ss_pred HHHHHHHHHHh---hcCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 31 VNLARHIANTK---AYGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 31 ~NL~~HIeNi~---~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
.++.+.++.++ ..++|+|+++|+-.-....+ .+.+.++++..++. +..+ =++-|+|-.+|-+.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 101 QNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEI--SAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp HTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEE--BTTTTBTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEE--ecCCCCCHHHHHHHHHHHHhc
Confidence 34444444443 45899999999987554332 24456777777875 4333 346688899999998888765
No 103
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=76.08 E-value=6.7 Score=32.05 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=36.5
Q ss_pred HHHHhHHHHHHHHHHHhhcCCeEEEEecCCCC-C--cH-------HHHHHHHHHHHHcCCCeEEEccc
Q 042073 25 LVEAGCVNLARHIANTKAYGVNVVVAVNMFAT-D--SE-------AELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 25 al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~-D--T~-------~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
..++.+..+++.|+-.+.+|.+.|+. ..++. + ++ +.+..+.+.+++.|+. +++-++
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~-~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~ 143 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTA-FLWPSMDEEPVRYISQLARRIRQVAVELLPLGMR-VGLEYV 143 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEE-ECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE-eecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 36677888888899888899988873 22332 1 12 2234445556678886 777665
No 104
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=76.02 E-value=14 Score=28.08 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=35.9
Q ss_pred CCeEEEEecCCCCCcH---HHHHHHHHH---HHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 44 GVNVVVAVNMFATDSE---AELNAVRIA---AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 44 GvpvVVAIN~F~~DT~---~Ei~~i~~~---c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
++|+||++|+-.-..+ +|+...... ++..++. +. +.=++-|+|-.+|-+.+++.+.+
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV-IF--ASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE-EE--ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE-EE--EeeCCCccCHHHHHHHHHHHHHH
Confidence 8999999999765444 444332221 2334443 33 33456788988888888887653
No 105
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=75.88 E-value=8.8 Score=29.45 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhh------cCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 30 CVNLARHIANTKA------YGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 30 ~~NL~~HIeNi~~------fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
+.++.+.+..+.+ .++|+++++|+-.-..+.+.+.+.+++. +.++. +-+.=++-|+|-.+|-+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 106 MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH---ICASDAIKGEGLQEGVDWLQ 182 (190)
T ss_dssp HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE---EEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE---EEEccCCCCcCHHHHHHHHH
Confidence 5566666655543 4899999999976543323334444442 12332 33344667888888888887
Q ss_pred HHhh
Q 042073 99 RACE 102 (225)
Q Consensus 99 ~~~e 102 (225)
+.++
T Consensus 183 ~~i~ 186 (190)
T 2h57_A 183 DQIQ 186 (190)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 7764
No 106
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=75.85 E-value=8.7 Score=29.79 Aligned_cols=70 Identities=10% Similarity=-0.106 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCC----CcHHHHHHHHHHHHHcC-CCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFAT----DSEAELNAVRIAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~----DT~~Ei~~i~~~c~~~g-~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++..-++.++. .++|+|++.|+-.- +..-..+.+.+++++.| +. +.. .=++-|+|-.+|-+.+++.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~e--~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 101 FQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCT-YYE--TCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp HHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCE-EEE--EBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCe-EEE--ecCCCCCCHHHHHHHHHHH
Confidence 5566666666665 47999999999653 11122345667888887 53 433 3357788988888888776
Q ss_pred hh
Q 042073 101 CE 102 (225)
Q Consensus 101 ~e 102 (225)
+.
T Consensus 178 i~ 179 (184)
T 3ihw_A 178 VV 179 (184)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 107
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=75.51 E-value=2.2 Score=31.66 Aligned_cols=70 Identities=9% Similarity=-0.057 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhh-----cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA-----YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~-----fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.+++ -++|+++++|+-.-..+.+ .+...++++..++. +..+ =++-|+|-.+|-+.+++.++
T Consensus 90 ~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 90 LEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMET--SAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEe--cCCCCcCHHHHHHHHHHHHh
Confidence 3444444444443 3799999999975322222 23445677777875 4333 35668899999998888765
No 108
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=75.50 E-value=6.2 Score=30.41 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhh--cCCeEEEEecCCCCCcHHHHH-----HHHHHHHHcCCCeE-EEccccccCc-hhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA--YGVNVVVAVNMFATDSEAELN-----AVRIAAMAAGAFDA-VVCSHHAHGG-KGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~--fGvpvVVAIN~F~~DT~~Ei~-----~i~~~c~~~g~~~~-avs~~wa~GG-~Ga~~LA~~Vv~~ 100 (225)
+.++...++.++. -+.|++++.|+..-..+.++. ...+++++.|.... ...+.=++-| +|-.+|.+.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 96 VDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp HHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence 4566666666654 389999999998765555542 23456666677410 0122234455 5889999999887
Q ss_pred hhc
Q 042073 101 CEN 103 (225)
Q Consensus 101 ~e~ 103 (225)
+.+
T Consensus 176 ~~~ 178 (184)
T 2zej_A 176 SLN 178 (184)
T ss_dssp HHC
T ss_pred Hhc
Confidence 753
No 109
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=75.09 E-value=6.7 Score=30.83 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhh----cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKA----YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.+.++.+.++.++. .++|+|++.|+-.-..+. ..+...+++++.++. +.. .=++-|+|-.+|-+.+++.+.
T Consensus 111 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e--~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 111 SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIE--TSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEE--EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEE--EcCCCCCCHHHHHHHHHHHHH
Confidence 35566666666654 489999999987543221 233456778888875 433 335678888898888888775
Q ss_pred c
Q 042073 103 N 103 (225)
Q Consensus 103 ~ 103 (225)
.
T Consensus 188 ~ 188 (195)
T 3cbq_A 188 L 188 (195)
T ss_dssp T
T ss_pred H
Confidence 3
No 110
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.04 E-value=3.2 Score=30.67 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcH---H--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSE---A--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~---~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++.+.++.+++ -++|+++++|+..-..+ . ..+...+++++.|+. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 91 FIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETS--AKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 4455555555543 48999999999653221 1 123456677778885 44433 455788888877776544
No 111
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=75.02 E-value=9.2 Score=35.37 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCeEE-EEec---CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhh
Q 042073 33 LARHIANTKAYGVNVV-VAVN---MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGA 90 (225)
Q Consensus 33 L~~HIeNi~~fGvpvV-VAIN---~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga 90 (225)
.++.++.|+..|.++| +.++ .|..+.-+.++.+.++|.++|+. +.+.-|...|..+.
T Consensus 41 ~~~di~~ik~~G~N~VRipv~~g~~~~~~~l~~ld~vv~~a~~~Gl~-VIlDlH~~~g~~~~ 101 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLV-AVLEVHDATGYDSI 101 (464)
T ss_dssp HHHHHHHHHTTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEECTTTTCCCH
T ss_pred hHHHHHHHHHCCCCEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCCCCh
Confidence 4578999999999998 7776 57778889999999999999996 88887777665543
No 112
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=74.97 E-value=22 Score=30.86 Aligned_cols=143 Identities=16% Similarity=0.249 Sum_probs=80.9
Q ss_pred CCCCCccCCCCCccc------cccccHHHHHHhH--HHHHHHHHHHhh--cCCeEEEE--ecC-CCCCcHHHHHHHHHHH
Q 042073 3 GGGPQVVAGKPLDHA------YLNENVALVEAGC--VNLARHIANTKA--YGVNVVVA--VNM-FATDSEAELNAVRIAA 69 (225)
Q Consensus 3 GGv~~~~lg~pl~~~------l~~eN~~al~~G~--~NL~~HIeNi~~--fGvpvVVA--IN~-F~~DT~~Ei~~i~~~c 69 (225)
+|+...++|-|..+- ..+-+..||+.|+ .++...++.+|+ ..+|+|+- .|- |.... +...+.|
T Consensus 44 ~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~----e~f~~~~ 119 (267)
T 3vnd_A 44 NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGI----DEFYTKA 119 (267)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCH----HHHHHHH
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhH----HHHHHHH
Confidence 455555566433222 2334567899994 455667777775 47897764 242 22222 4455678
Q ss_pred HHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-----Hhcc-----CCC--CCC
Q 042073 70 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-----SYGA-----SGV--EYS 137 (225)
Q Consensus 70 ~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-----IYGA-----~~V--~~s 137 (225)
++.|+..+.+.+.=- +=++.+++.+.+..-..-++-..+.|. +.|+.|++ ||-. .+. .++
T Consensus 120 ~~aGvdgvii~Dlp~-------ee~~~~~~~~~~~gl~~i~liaP~t~~-eri~~i~~~~~gfvY~vS~~GvTG~~~~~~ 191 (267)
T 3vnd_A 120 QAAGVDSVLIADVPV-------EESAPFSKAAKAHGIAPIFIAPPNADA-DTLKMVSEQGEGYTYLLSRAGVTGTESKAG 191 (267)
T ss_dssp HHHTCCEEEETTSCG-------GGCHHHHHHHHHTTCEEECEECTTCCH-HHHHHHHHHCCSCEEESCCCCCC-------
T ss_pred HHcCCCEEEeCCCCH-------hhHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHhCCCcEEEEecCCCCCCccCCc
Confidence 889998556654322 225556666654322344555665554 57777765 4542 222 255
Q ss_pred HHHHHHHHHHHHCCCCCCCeeE
Q 042073 138 EEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 138 ~~A~~~l~~~e~~G~~~lPVCm 159 (225)
+.....++++.+. .++|||+
T Consensus 192 ~~~~~~v~~vr~~--~~~pv~v 211 (267)
T 3vnd_A 192 EPIENILTQLAEF--NAPPPLL 211 (267)
T ss_dssp -CHHHHHHHHHTT--TCCCEEE
T ss_pred HHHHHHHHHHHHh--cCCCEEE
Confidence 6677888888876 4799998
No 113
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=74.22 E-value=5.6 Score=29.94 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHH-HHHHHHhhc--CCeEEEEecCCCCCcHHH------------HHHHHHHHHHcCCCeEEEccccccCchhhHHHH
Q 042073 30 CVNLA-RHIANTKAY--GVNVVVAVNMFATDSEAE------------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLG 94 (225)
Q Consensus 30 ~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT~~E------------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA 94 (225)
+.++. +.++.++.+ ++|+++++|+..-..+.+ .+...+++++.|...+.. .=++-|+|-.+|-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 95 YENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE--CSSKSQENVKGVF 172 (182)
T ss_dssp HHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE--CCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE--EECCCCCCHHHHH
Confidence 45554 345555553 899999999965322222 244567788888632433 3356688888888
Q ss_pred HHHHHHh
Q 042073 95 IAVQRAC 101 (225)
Q Consensus 95 ~~Vv~~~ 101 (225)
+.+++.+
T Consensus 173 ~~l~~~i 179 (182)
T 3bwd_D 173 DAAIRVV 179 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 114
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=74.08 E-value=18 Score=29.73 Aligned_cols=83 Identities=7% Similarity=0.019 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHHHhhcCCeEEEEec-CCCC--CcH-------HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHH
Q 042073 27 EAGCVNLARHIANTKAYGVNVVVAVN-MFAT--DSE-------AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 96 (225)
Q Consensus 27 ~~G~~NL~~HIeNi~~fGvpvVVAIN-~F~~--DT~-------~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~ 96 (225)
++.+..+++.|+..+.+|.+.|+..- ..+. +++ +-++.+.+.+++.|+. +++-+++..-.. ..+-+..
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~-~~~~~~~ 157 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMY-VLLETHPNTLTD-TLPSTLE 157 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCTTSTTS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCE-EEEecCCCcCcC-CHHHHHH
Confidence 34466677777777777777776532 1111 222 2233444555667775 666666432221 1222344
Q ss_pred HHHHhhcCCCCcccccC
Q 042073 97 VQRACENVTQPLKFLYP 113 (225)
Q Consensus 97 Vv~~~e~~~~~f~~lY~ 113 (225)
+++.+. +.++..+||
T Consensus 158 l~~~~~--~~~vg~~~D 172 (286)
T 3dx5_A 158 LLGEVD--HPNLKINLD 172 (286)
T ss_dssp HHHHHC--CTTEEEEEE
T ss_pred HHHhcC--CCCeEEEec
Confidence 444442 234555554
No 115
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=74.06 E-value=23 Score=29.18 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=54.2
Q ss_pred HHHHHhHHHHHHHHHHHhhcCCeEEEEe-------cCCCC-------C-cHHH-------HHHHHHHHHHcCCCeEEEcc
Q 042073 24 ALVEAGCVNLARHIANTKAYGVNVVVAV-------NMFAT-------D-SEAE-------LNAVRIAAMAAGAFDAVVCS 81 (225)
Q Consensus 24 ~al~~G~~NL~~HIeNi~~fGvpvVVAI-------N~F~~-------D-T~~E-------i~~i~~~c~~~g~~~~avs~ 81 (225)
+..++.+..+++.|+..+.+|.+.||.. -.+.. . +++. +..+.+.+++.|+. +++-+
T Consensus 83 ~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~ 161 (301)
T 3cny_A 83 DGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLK-VAYHH 161 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCE-EEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCE-EEEec
Confidence 3456788999999999999999998865 12211 1 4443 34455667788996 88888
Q ss_pred ccccCchhhHHHHHHHHHHhhcCCCCcccccCC
Q 042073 82 HHAHGGKGAVDLGIAVQRACENVTQPLKFLYPS 114 (225)
Q Consensus 82 ~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~ 114 (225)
++..-.. ..+-+..+++.+. +.++..++|.
T Consensus 162 ~~~~~~~-~~~~~~~l~~~~~--~~~vg~~~D~ 191 (301)
T 3cny_A 162 HMGTGIQ-TKEETDRLMANTD--PKLVGLLYDT 191 (301)
T ss_dssp CTTSSSC-SHHHHHHHHHTSC--TTTCEEEEEH
T ss_pred CCCcccC-CHHHHHHHHHhCC--ccceeEEech
Confidence 7532222 2333444445442 2347777764
No 116
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=73.75 E-value=2 Score=34.30 Aligned_cols=72 Identities=8% Similarity=-0.087 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhhc--CCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 29 GCVNLARHIANTKAY--GVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 29 G~~NL~~HIeNi~~f--GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
-+.++.+.++.++++ ++|+|+++|+-.-..........++++..++. +..+. ++-|+|-.+|-+.+.+.+..
T Consensus 102 s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 102 TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDIS--AKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp HHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE-EEECB--GGGTBTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHh
Confidence 355666666666653 89999999997643333333455677888885 44333 56688888988888887754
No 117
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=73.73 E-value=1.4 Score=34.59 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEecCCCCCcHHHH--HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKAY---GVNVVVAVNMFATDSEAEL--NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~f---GvpvVVAIN~F~~DT~~Ei--~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++.+ ++|+|+++|+..-..+.++ +.+.+++.+.++. +. +.=++=|+|-.+|-+.+++.+.
T Consensus 121 ~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~--~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 121 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FL--ETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BC--CCCC---HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EE--EEECCCCCCHHHHHHHHHHHHH
Confidence 55666666666654 8999999999765433322 3456778888886 33 3335668888888777766553
No 118
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=73.66 E-value=8.3 Score=31.31 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=36.1
Q ss_pred cCCeEEEEecCCCCCcHHHHH--------HHHHHHHHcCCCeEEEcccccc---CchhhHHHHHHHHHHhhc
Q 042073 43 YGVNVVVAVNMFATDSEAELN--------AVRIAAMAAGAFDAVVCSHHAH---GGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~--------~i~~~c~~~g~~~~avs~~wa~---GG~Ga~~LA~~Vv~~~e~ 103 (225)
.+.|++|++|+-..-.+.+++ .+++++++.|.+ +...+.-+. .++|-.+|-+.+.+...+
T Consensus 144 ~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 144 ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HGGGEEEEEECGGGC------------CHHHHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 446999999986543344443 566677777776 544444332 236778888888887764
No 119
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=73.44 E-value=16 Score=30.62 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=61.6
Q ss_pred cccccc-HHHHHHhHHHHHHHHHHHhhcCCeEEEEe-cCCCC-CcHHHHHHHHHHHHH-----cCCCeEEEccccccCch
Q 042073 17 AYLNEN-VALVEAGCVNLARHIANTKAYGVNVVVAV-NMFAT-DSEAELNAVRIAAMA-----AGAFDAVVCSHHAHGGK 88 (225)
Q Consensus 17 ~l~~eN-~~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~F~~-DT~~Ei~~i~~~c~~-----~g~~~~avs~~wa~GG~ 88 (225)
.+..++ .+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++.+.+..++ .|+. .++-++...+..
T Consensus 79 nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~l~~~a~gv~-l~lEn~~~~~~~ 157 (303)
T 3aal_A 79 NIGNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQ-IALETMAGKGSE 157 (303)
T ss_dssp CTTCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHHHCCSSCSCE-EEEECCCCCTTE
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCE-EEEecCCCCCCc
Confidence 344567 77888999999999999999999998862 22222 556666666555443 4785 888887544332
Q ss_pred -h-hHHHHHHHHHHhhcCCCCcccccCC
Q 042073 89 -G-AVDLGIAVQRACENVTQPLKFLYPS 114 (225)
Q Consensus 89 -G-a~~LA~~Vv~~~e~~~~~f~~lY~~ 114 (225)
+ ..+-+..+++.+.. +..+..++|.
T Consensus 158 ~~~t~~~~~~li~~v~~-~~~vg~~lD~ 184 (303)
T 3aal_A 158 CGRTFEELAYIIDGVAY-NDKLSVCFDT 184 (303)
T ss_dssp ECSSHHHHHHHHHHCTT-GGGEEEEEEH
T ss_pred cCCCHHHHHHHHHhcCC-CCCEEEEEEc
Confidence 2 44555566666642 1346666653
No 120
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=73.19 E-value=17 Score=29.45 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=7.4
Q ss_pred HHHHHHHHHHcCCC
Q 042073 62 LNAVRIAAMAAGAF 75 (225)
Q Consensus 62 i~~i~~~c~~~g~~ 75 (225)
+....+.|+++|+.
T Consensus 87 ~~~~i~~a~~lG~~ 100 (272)
T 2q02_A 87 TEGLLRDAQGVGAR 100 (272)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCCC
Confidence 34444455566665
No 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=73.16 E-value=11 Score=29.43 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=45.3
Q ss_pred hHHHH-HHHHHHHhhc--CCeEEEEecCCCCCcHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 29 GCVNL-ARHIANTKAY--GVNVVVAVNMFATDSEAE--------------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 29 G~~NL-~~HIeNi~~f--GvpvVVAIN~F~~DT~~E--------------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
.+.++ ...++.++++ ++|+||++|+-.-..+.+ .+...+++.+.+...+. +.=++=|+|-.
T Consensus 111 s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~SA~~g~gi~ 188 (207)
T 2fv8_A 111 SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL--ECSAKTKEGVR 188 (207)
T ss_dssp HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE--ECCTTTCTTHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE--EeeCCCCCCHH
Confidence 45555 3445556555 899999999975433221 12345667777763233 23356678888
Q ss_pred HHHHHHHHHhh
Q 042073 92 DLGIAVQRACE 102 (225)
Q Consensus 92 ~LA~~Vv~~~e 102 (225)
+|-+.+++.+-
T Consensus 189 el~~~l~~~i~ 199 (207)
T 2fv8_A 189 EVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 122
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=72.87 E-value=7.1 Score=33.15 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCeEE-EEec---CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 35 RHIANTKAYGVNVV-VAVN---MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 35 ~HIeNi~~fGvpvV-VAIN---~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
+.++.|+..|+++| +.++ .+..+..+.++.+.++|.++|.. +.+.-|...|.
T Consensus 36 ~~~~~lk~~G~N~VRi~~~~~~~w~~~~~~~ld~~v~~a~~~Gi~-Vild~h~~~~~ 91 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLI-CMLEVHDTTGY 91 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEEGGGTTT
T ss_pred HHHHHHHHcCCCEEEEEccCCcccCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 67888999999998 7777 56777788999999999999996 88887766554
No 123
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=72.85 E-value=10 Score=28.93 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=42.7
Q ss_pred HHHH-HHHHHHHhh--cCCeEEEEecCCCCCcHH--------------HHHHHHHHHHHcCCCeEEEcccccc-CchhhH
Q 042073 30 CVNL-ARHIANTKA--YGVNVVVAVNMFATDSEA--------------ELNAVRIAAMAAGAFDAVVCSHHAH-GGKGAV 91 (225)
Q Consensus 30 ~~NL-~~HIeNi~~--fGvpvVVAIN~F~~DT~~--------------Ei~~i~~~c~~~g~~~~avs~~wa~-GG~Ga~ 91 (225)
+.++ ..-++.++. -++|+|++.|+..-..+. ..+...+++++.|...+. +.=++ +|+|-.
T Consensus 94 ~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--e~Sa~~~~~gi~ 171 (184)
T 1m7b_A 94 LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI--ECSALQSENSVR 171 (184)
T ss_dssp HHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE--ECBTTTBHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEE--EeeecCCCcCHH
Confidence 3444 233344444 389999999997543211 123466788887742243 33455 788888
Q ss_pred HHHHHHHHHh
Q 042073 92 DLGIAVQRAC 101 (225)
Q Consensus 92 ~LA~~Vv~~~ 101 (225)
+|-+.+++.+
T Consensus 172 ~l~~~i~~~~ 181 (184)
T 1m7b_A 172 DIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 124
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=72.76 E-value=9.4 Score=34.12 Aligned_cols=44 Identities=23% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCe-EEEEecCCCCC-cHHHHH----HHHHHHHHcCC
Q 042073 31 VNLARHIANTKAYGVN-VVVAVNMFATD-SEAELN----AVRIAAMAAGA 74 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvp-vVVAIN~F~~D-T~~Ei~----~i~~~c~~~g~ 74 (225)
....+|++.++..|+| +||++|+-... .++.++ .+++++++.|.
T Consensus 114 ~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 114 PQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 4567889888999999 89999997653 233233 45667777773
No 125
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=72.71 E-value=7.6 Score=29.92 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=47.3
Q ss_pred HHHH-HHHHHHHhhc--CCeEEEEecCCCCCc----HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNL-ARHIANTKAY--GVNVVVAVNMFATDS----EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL-~~HIeNi~~f--GvpvVVAIN~F~~DT----~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++ ...++.++.+ ++|+|+++|+-.--. ....+.+.+++++.|+..+ -+.=++-|+|-.+|-+.+++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 110 FDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAY--IEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp HHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCE--EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEE--EEeecCCCCCHHHHHHHHHHHHH
Confidence 4454 3445555554 799999999865321 1223456678888888522 23446778999999999888775
Q ss_pred c
Q 042073 103 N 103 (225)
Q Consensus 103 ~ 103 (225)
.
T Consensus 188 ~ 188 (194)
T 3reg_A 188 S 188 (194)
T ss_dssp C
T ss_pred h
Confidence 4
No 126
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.68 E-value=5 Score=31.98 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHh---hcCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTK---AYGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~---~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.++.++ ..++|+|++.|+-.-..+.+ .+.++++++..|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 114 ~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 114 FRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETS--AKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 344444444444 35899999999965432211 23456777788886 44333 4667888888777776654
No 127
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=72.39 E-value=6.1 Score=33.49 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=43.1
Q ss_pred ccHHHHHHhHH-HHHHHHHHHh----hcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 21 ENVALVEAGCV-NLARHIANTK----AYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 21 eN~~al~~G~~-NL~~HIeNi~----~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
-|+-+++.|-. -+.+.|..++ ..++||++-.-.. |++|+....+.|.++|+..+-.|+.|.-||.--.
T Consensus 92 inig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l---~~e~i~~a~~ia~eaGADfVKTsTGf~~~gat~~ 164 (220)
T 1ub3_A 92 LHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF---SPEEIARLAEAAIRGGADFLKTSTGFGPRGASLE 164 (220)
T ss_dssp CCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS---CHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHH
T ss_pred ccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCC---CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHH
Confidence 45666554422 2333344333 3567777655443 4899999999999999974445667987776543
No 128
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=72.25 E-value=5.7 Score=31.34 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=43.9
Q ss_pred hHHHHH-HHHHHHhhc--CCeEEEEecCCCCCcHHH--------------HHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 29 GCVNLA-RHIANTKAY--GVNVVVAVNMFATDSEAE--------------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 29 G~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT~~E--------------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
.+.++. ..++.++++ ++|+||++|+-.-..+.+ .+...+++++.|...+. +.=++-|+|-.
T Consensus 116 s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~SA~~g~gi~ 193 (204)
T 4gzl_A 116 SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL--ECSALTQRGLK 193 (204)
T ss_dssp HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE--ECCTTTCTTHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE--EeeCCCCCCHH
Confidence 345554 455566655 999999999964322221 23456778888874333 33356788888
Q ss_pred HHHHHHHHH
Q 042073 92 DLGIAVQRA 100 (225)
Q Consensus 92 ~LA~~Vv~~ 100 (225)
+|-+.+++.
T Consensus 194 ~l~~~l~~~ 202 (204)
T 4gzl_A 194 TVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 887777654
No 129
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.18 E-value=4.6 Score=31.01 Aligned_cols=58 Identities=10% Similarity=-0.028 Sum_probs=40.2
Q ss_pred cCCeEEEEecCCCCCc-HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 43 YGVNVVVAVNMFATDS-EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT-~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
.++|+||++|+-.-.. +...+...+++.+.|+. +..+ =+.-|+|-.+|-+.+++.+..
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMET--SAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHHCSS
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEE--ecCCCCCHHHHHHHHHHHHhh
Confidence 3899999999976432 11234455677778875 4433 356689999999999988754
No 130
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=71.77 E-value=9.6 Score=34.74 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCc--H-HHHHHHHHHHHHcCCCeEEEcc-ccccCchhhHHHHHHHHHHhh
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDS--E-AELNAVRIAAMAAGAFDAVVCS-HHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT--~-~Ei~~i~~~c~~~g~~~~avs~-~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.-+++|++-||.+||-. +|+|.|..|. + .-++.+.+.+++.|.. +..+- .|. |.....+.+.|..+++
T Consensus 104 ~v~~~h~~~Ak~aGIDg-f~l~w~~~~~~~d~~~l~~~l~aA~~~~~k-~~f~~~~~~--~~~~~~~~~di~~li~ 175 (380)
T 4ad1_A 104 NILTKHMDMFVMARTGV-LALTWWNEQDETEAKRIGLILDAADKKKIK-VCFHLEPYP--SRNVQNLRENIVKLIT 175 (380)
T ss_dssp HHHHHHHHHHHHHTEEE-EEEEECCCCSHHHHHHHHHHHHHHHHTTCE-EEEEECCCT--TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCE-EEEEecCCCCcccHHHHHHHHHHHHHcCCe-EEEEECCCC--CCChHHHHHHHHHHHH
Confidence 35889999999999995 5789998774 4 4477778888888885 66553 242 3444566666666654
No 131
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=71.69 E-value=16 Score=32.02 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=66.0
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHH-------HHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCC
Q 042073 33 LARHIANTKAYGVNVVVAVNMFATDSEAELNAV-------RIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 105 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i-------~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~ 105 (225)
|++-|+..++||++| |+..|-.|+.+. .++|+++|..-+.+|+.+-+=. -.+..+.|-.+.+.
T Consensus 57 l~eki~l~~~~gV~v------~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~--~~~~~~~I~~~~~~-- 126 (251)
T 1qwg_A 57 VKEKINYYKDWGIKV------YPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDIS--LEERNNAIKRAKDN-- 126 (251)
T ss_dssp HHHHHHHHHTTTCEE------EECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCC--HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCeE------ECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHHHC--
Confidence 777899999999998 568887776655 6889999998888888776633 34555555555443
Q ss_pred CCccccc---------CCCCCHHHHHHHHHh--HhccCCCCC
Q 042073 106 QPLKFLY---------PSDVSIKEKIDTIAR--SYGASGVEY 136 (225)
Q Consensus 106 ~~f~~lY---------~~~~~i~eKI~~IA~--IYGA~~V~~ 136 (225)
-|+.+. +...++.+.|+.+.+ =-||+.|..
T Consensus 127 -G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~Vii 167 (251)
T 1qwg_A 127 -GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVII 167 (251)
T ss_dssp -TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred -CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 255544 234678888998888 667777644
No 132
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=71.61 E-value=9.1 Score=28.53 Aligned_cols=57 Identities=11% Similarity=-0.022 Sum_probs=37.1
Q ss_pred cCCeEEEEecCCCCCcHH---HHHHHHHHHH-HcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSEA---ELNAVRIAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~---Ei~~i~~~c~-~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++|+++++|+-.-..++ ..+.+.++++ ..+.. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP-LFLTS--AKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC-EEEEB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 689999999997652221 2344566666 34555 43333 5667888888888877654
No 133
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=71.31 E-value=18 Score=29.72 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=66.6
Q ss_pred cHHHHHHhHH--HHHHHHHHHhh-cCCeEEEEe--c-CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 042073 22 NVALVEAGCV--NLARHIANTKA-YGVNVVVAV--N-MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 22 N~~al~~G~~--NL~~HIeNi~~-fGvpvVVAI--N-~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
+..||+.|.. +....|+.+++ +++|+++-. | .|..+.++.+ +.|.+.|+. .++.-.... + + .+
T Consensus 55 ~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~----~~~~~~Gad-~v~~~~~~~--~---~-~~ 123 (248)
T 1geq_A 55 HYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFL----AEAKASGVD-GILVVDLPV--F---H-AK 123 (248)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHH----HHHHHHTCC-EEEETTCCG--G---G-HH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHH----HHHHHCCCC-EEEECCCCh--h---h-HH
Confidence 3456777752 33677888876 789988876 5 4555545544 456678997 444422211 1 2 34
Q ss_pred HHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-----Hh-----ccCCC--CCCHHHHHHHHHHHHCCCCCCCeeEe
Q 042073 96 AVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-----SY-----GASGV--EYSEEAEKQIKMYTRQGFSGLPFCMA 160 (225)
Q Consensus 96 ~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-----IY-----GA~~V--~~s~~A~~~l~~~e~~G~~~lPVCmA 160 (225)
.+++.+.+....+-+..+.. +..+.++.+.. +| |..+- .+.+...+.++++.+.- ++||+..
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~-t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~ 197 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPN-TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVG 197 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTT-CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEE
T ss_pred HHHHHHHHhCCCeEEEECCC-CHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEE
Confidence 55666653222233344433 33445555543 21 11111 15567777888887752 5788763
No 134
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=71.14 E-value=2.6 Score=32.06 Aligned_cols=65 Identities=20% Similarity=0.128 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCCcHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 34 ARHIANTKAYGVNVVVAVNMFATDSEAEL-NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei-~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
.+.++.+++.++|+|++.|+-.-..+.++ ....+++++.|+. +..+. ++=|+|-.+|-+.+++.+
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEE--cCCCCCHHHHHHHHHHHh
Confidence 33455566689999999998532111111 0245667777876 44333 566888888888877655
No 135
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=71.12 E-value=12 Score=28.44 Aligned_cols=71 Identities=11% Similarity=-0.008 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.+.+..+.+ .++|+++++|+-.-..+.+.+.+.+... ..++. +-+.=++-|+|-.+|-+.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~ 177 (186)
T 1ksh_A 101 MQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR---IQGCSAVTGEDLLPGIDWLLDD 177 (186)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE---EEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE---EEEeeCCCCCCHHHHHHHHHHH
Confidence 4455555555433 5899999999976543333333333322 22332 3334456688999999998888
Q ss_pred hhc
Q 042073 101 CEN 103 (225)
Q Consensus 101 ~e~ 103 (225)
+.+
T Consensus 178 i~~ 180 (186)
T 1ksh_A 178 ISS 180 (186)
T ss_dssp HHT
T ss_pred HHh
Confidence 753
No 136
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=70.80 E-value=16 Score=27.37 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=42.1
Q ss_pred hHHHHHHH---HHHHhh---cCCeEEEEecCCCCC--c--HHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHHH
Q 042073 29 GCVNLARH---IANTKA---YGVNVVVAVNMFATD--S--EAELNAVRIAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAV 97 (225)
Q Consensus 29 G~~NL~~H---IeNi~~---fGvpvVVAIN~F~~D--T--~~Ei~~i~~~c~~~-g~~~~avs~~wa~GG~Ga~~LA~~V 97 (225)
.+.++.+. +..++. -++|+|++.|+-.-. . .-..+.+.+++++. ++. +..+ =++-|+|-.+|-+.+
T Consensus 87 s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~i~~lf~~l 163 (178)
T 2iwr_A 87 SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS-YYET--XATYGLNVDRVFQEV 163 (178)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE-EEEE--BTTTTBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe-EEEE--eccccCCHHHHHHHH
Confidence 35566664 444444 389999999996541 1 11123345666665 454 3332 256678888887777
Q ss_pred HHHhh
Q 042073 98 QRACE 102 (225)
Q Consensus 98 v~~~e 102 (225)
++.+.
T Consensus 164 ~~~~~ 168 (178)
T 2iwr_A 164 AQKVV 168 (178)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 137
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=70.50 E-value=3.8 Score=36.54 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=33.4
Q ss_pred cCCeEEEEecCCCCCcHHHHHH----HHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 43 YGVNVVVAVNMFATDSEAELNA----VRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~----i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
-++|+|+++|+-..-++.|+.. +.+++++.|+.-+.+|..-.+|.+.-.+|++.+.+.+
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcC
Confidence 5899999999998888888854 5566666677522233223334445566677666543
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=70.41 E-value=3.1 Score=38.38 Aligned_cols=70 Identities=17% Similarity=0.068 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
....+.++.++.+++|+||++|+-.-..+++.+...+++++.|+. +.. .=++-|+|-.+|-+.+++.+.+
T Consensus 127 ~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~-v~~--vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 127 PYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAK-VLL--VSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCC-CCC--CSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCC-EEE--EECCCCCCHHHHHHHHHHhhhh
Confidence 345667777888899999999997654444445666666677775 433 3356688999999999998843
No 139
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=70.40 E-value=5 Score=32.97 Aligned_cols=41 Identities=29% Similarity=0.342 Sum_probs=27.7
Q ss_pred CHHHHHHHHHh-HhccCCCCCCHHHHHHHHHHHHCCCCCCCe----eEeecCCCcC
Q 042073 117 SIKEKIDTIAR-SYGASGVEYSEEAEKQIKMYTRQGFSGLPF----CMAKTQHSFS 167 (225)
Q Consensus 117 ~i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~e~~G~~~lPV----CmAKTqyS~S 167 (225)
.|++||+.|-. ||. .+.++++++++ .+.||- ||||---+.|
T Consensus 11 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~ta~e~c~~kf~~l~s 56 (166)
T 2r32_A 11 QIEDKIEEILSKIYH---------IENEIARIKKL-IGERETAKEPCMAKFGPLPS 56 (166)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHC----------CCEEEECSTTC
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHH-hccccccccchhhhcCcCch
Confidence 48999999999 996 46788889887 556663 9988644433
No 140
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=70.11 E-value=7.8 Score=33.67 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=84.8
Q ss_pred CCCCCccCCCCCccc------cccccHHHHHHhHHHHHHHHHHHhhcC--CeEEE--EecCCCCCcHHHHHHHHHHHHHc
Q 042073 3 GGGPQVVAGKPLDHA------YLNENVALVEAGCVNLARHIANTKAYG--VNVVV--AVNMFATDSEAELNAVRIAAMAA 72 (225)
Q Consensus 3 GGv~~~~lg~pl~~~------l~~eN~~al~~G~~NL~~HIeNi~~fG--vpvVV--AIN~F~~DT~~Ei~~i~~~c~~~ 72 (225)
+|+...++|-|-.+- ..+-+..||+.|+ ++.+-++-++++. +|+|+ -.|-+- .-=++...+.|++.
T Consensus 40 ~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~-~~~~~~~~~~~~r~~~Pivlm~Y~N~i~---~~G~e~F~~~~~~a 115 (252)
T 3tha_A 40 SPIDILELGVAYSDPIADGEIIADAAKIALDQGV-DIHSVFELLARIKTKKALVFMVYYNLIF---SYGLEKFVKKAKSL 115 (252)
T ss_dssp SSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTC-CHHHHHHHHHHCCCSSEEEEECCHHHHH---HHCHHHHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCC-CHHHHHHHHHHHhcCCCEEEEeccCHHH---HhhHHHHHHHHHHc
Confidence 455555555444332 3346778999997 6777777777653 68877 556210 01145667789999
Q ss_pred CCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-H----h-----ccCCCC--CCHHH
Q 042073 73 GAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-S----Y-----GASGVE--YSEEA 140 (225)
Q Consensus 73 g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-I----Y-----GA~~V~--~s~~A 140 (225)
|+..+.+-+.=- |-++...+.+++..-.+-+|-..+.| .+.|++|++ . | |-++.. +++..
T Consensus 116 GvdG~IipDLP~-------eE~~~~~~~~~~~Gl~~I~lvaP~t~-~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~ 187 (252)
T 3tha_A 116 GICALIVPELSF-------EESDDLIKECERYNIALITLVSVTTP-KERVKKLVKHAKGFIYLLASIGITGTKSVEEAIL 187 (252)
T ss_dssp TEEEEECTTCCG-------GGCHHHHHHHHHTTCEECEEEETTSC-HHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHH
T ss_pred CCCEEEeCCCCH-------HHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHH
Confidence 998666666422 12455666665432223444455444 578888876 3 3 223332 33345
Q ss_pred HHHHHHHHHCCCCCCCeeE
Q 042073 141 EKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 141 ~~~l~~~e~~G~~~lPVCm 159 (225)
...++++++. .++|||+
T Consensus 188 ~~~v~~vr~~--~~~Pv~v 204 (252)
T 3tha_A 188 QDKVKEIRSF--TNLPIFV 204 (252)
T ss_dssp HHHHHHHHTT--CCSCEEE
T ss_pred HHHHHHHHHh--cCCcEEE
Confidence 6677888776 4799998
No 141
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=70.10 E-value=8.2 Score=33.04 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHH
Q 042073 34 ARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAA-GAFDAVVCSHHAHGGKGAVDLG 94 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~-g~~~~avs~~wa~GG~Ga~~LA 94 (225)
..|++...+.|+|+||.-= .-++++++.|+++|++. ++. +..+..|+.|..=-..|+
T Consensus 59 ~~~~~~a~~~g~~~VigTT---G~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv~ll~~l~ 116 (245)
T 1p9l_A 59 MGNLEFLIDNGIHAVVGTT---GFTAERFQQVESWLVAKPNTS-VLIAPNFAIGAVLSMHFA 116 (245)
T ss_dssp HHHHHHHHHTTCEEEECCC---CCCHHHHHHHHHHHHTSTTCE-EEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEcCC---CCCHHHHHHHHHHHHhCCCCC-EEEECCccHHHHHHHHHH
Confidence 3445555567777777422 23356667777777755 664 666666655544333333
No 142
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=70.02 E-value=9.8 Score=31.76 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcC-CeEEEEecCCCCCcHHHHH-HHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCC--
Q 042073 31 VNLARHIANTKAYG-VNVVVAVNMFATDSEAELN-AVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ-- 106 (225)
Q Consensus 31 ~NL~~HIeNi~~fG-vpvVVAIN~F~~DT~~Ei~-~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~-- 106 (225)
.|+.... .+...+ +|+|+++|+..-....++. .+.++++..|++ +..+ =+.-|+|-.+|-+.+.+.+.....
T Consensus 96 ~~~~~~~-~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~--Sa~~g~gi~~l~~~i~~~~~~~~~~~ 171 (271)
T 3k53_A 96 RNLFLTL-ELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPT--NAKKGEGVEELKRMIALMAEGKVTTN 171 (271)
T ss_dssp HHHHHHH-HHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEEC--BGGGTBTHHHHHHHHHHHHHTCCCCC
T ss_pred hhHHHHH-HHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEE--EeCCCCCHHHHHHHHHHHHhccccCC
Confidence 3444433 344567 9999999997421111110 145567778987 5443 356678999999999998865322
Q ss_pred CcccccCCCCCHHHHHHHHHh-Hhcc
Q 042073 107 PLKFLYPSDVSIKEKIDTIAR-SYGA 131 (225)
Q Consensus 107 ~f~~lY~~~~~i~eKI~~IA~-IYGA 131 (225)
.+..-| ...+++-++.|.. +=+.
T Consensus 172 ~~~~~~--~~~~e~~~~~l~~~~~~~ 195 (271)
T 3k53_A 172 PIIPRY--DEDIEREIKHISELLRGT 195 (271)
T ss_dssp CCCCCC--CHHHHHHHHHHHHHHHSS
T ss_pred CCCcCC--CHHHHHHHHHHHHHHhhc
Confidence 232233 2357777777777 6443
No 143
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=69.89 E-value=14 Score=29.14 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=46.5
Q ss_pred HHHHH-HHHHHHhhc--CCeEEEEecCCCCCcHHHH--------------HHHHHHHHHcCCCeEEEccccccCchhhHH
Q 042073 30 CVNLA-RHIANTKAY--GVNVVVAVNMFATDSEAEL--------------NAVRIAAMAAGAFDAVVCSHHAHGGKGAVD 92 (225)
Q Consensus 30 ~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT~~Ei--------------~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~ 92 (225)
+.++. +.++.++.+ ++|+|+++|+-.-..+.+. +...+++++.|...+.. .=++-|+|-.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~SA~~g~gi~e 198 (214)
T 2j1l_A 121 FDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE--CSARLHDNVHA 198 (214)
T ss_dssp HHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE--CBTTTTBSHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE--ecCCCCCCHHH
Confidence 45554 445555553 8999999999755333222 23467788888732433 33567889889
Q ss_pred HHHHHHHHhhc
Q 042073 93 LGIAVQRACEN 103 (225)
Q Consensus 93 LA~~Vv~~~e~ 103 (225)
|-+.+++.+-+
T Consensus 199 l~~~l~~~~~~ 209 (214)
T 2j1l_A 199 VFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887653
No 144
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=69.77 E-value=38 Score=28.00 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=63.6
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe--cCCC-CCcHHHHH----HHHHHHHHcC-CCeEEEccc--cccC
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV--NMFA-TDSEAELN----AVRIAAMAAG-AFDAVVCSH--HAHG 86 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI--N~F~-~DT~~Ei~----~i~~~c~~~g-~~~~avs~~--wa~G 86 (225)
.+..+|-+.-++.+..+++.|+..+.+|.+.||.. ..++ .++++.++ .+++.|..+. +. +++-++ |...
T Consensus 99 ~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~v~-l~lEn~~~~~~~ 177 (290)
T 2zvr_A 99 SLTHPNDEIRKKAIERVVKHTEVAGMFGALVIIGLVRGRREGRSYEETEELFIESMKRLLELTEHAK-FVIEPLNRYETD 177 (290)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEESGGGCCCTTSCHHHHHHHHHHHHHHHHHHCSSCC-EEECCCCTTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCCCCCcCHHHHHHHHHHHHHHHHHHhccCE-EEEEeCCCcCcc
Confidence 44456766778889999999999999999999922 1222 23444443 3444444332 75 777665 2111
Q ss_pred chhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh
Q 042073 87 GKGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR 127 (225)
Q Consensus 87 G~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~ 127 (225)
--...+-+..+++.+. ..++..++|. ..++.+=|++...
T Consensus 178 ~~~~~~~~~~l~~~~~--~~~vgl~~D~~h~~~~g~d~~~~l~~~~~ 222 (290)
T 2zvr_A 178 FINTIDDALRILRKIN--SNRVGILADTFHMNIEEVNIPESLKRAGE 222 (290)
T ss_dssp SCCSHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSSHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHcC--CCCEEEEEehhHhhhcCCCHHHHHHHhhc
Confidence 1123444555556553 2456766653 3456666666655
No 145
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=69.72 E-value=8.2 Score=33.39 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=42.2
Q ss_pred cHHHHHHhHH-HHHHHHHHHhh-c-C--CeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 22 NVALVEAGCV-NLARHIANTKA-Y-G--VNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 22 N~~al~~G~~-NL~~HIeNi~~-f-G--vpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
|+.+|+.|=. -+.+.|..+++ - + ++|++--... |++|+....+.|.++|+..+-.|+.|..||.--.
T Consensus 117 Nig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L---t~eei~~a~~ia~~aGADfVKTSTGf~~ggAt~~ 188 (239)
T 3ngj_A 117 NIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYL---TNEEKVEVCKRCVAAGAEYVKTSTGFGTHGATPE 188 (239)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGS---CHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHH
T ss_pred ehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCC---CHHHHHHHHHHHHHHCcCEEECCCCCCCCCCCHH
Confidence 5655555422 24445555554 2 3 4444433332 6889999999999999985556668988876443
No 146
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=69.66 E-value=11 Score=28.72 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=35.4
Q ss_pred HHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHH-----cCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 38 ANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMA-----AGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 38 eNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~-----~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
+.++..++|+++++|+.....+.+++...+..++ .+.. +. ..=++-|+|-.+|-+.+++.+
T Consensus 128 ~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 128 EFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE-LI--LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE-EE--ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc-eE--EEEccCCCCHHHHHHHHHHHh
Confidence 3445588899999998765555544433222221 2333 33 233456688778777777665
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=69.48 E-value=6.5 Score=33.03 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=34.3
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHHHHH----HHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAELNA----VRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~Ei~~----i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
++.++. ++|+|+++|+-..-+++|++. +.+.+...|++-+.+| +.-|+|-.+|.+.+.+.+
T Consensus 138 l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~s---a~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 138 MKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP---ETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------------CHHHHHTC
T ss_pred HHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCC---CCCChhHHHHHHHHhcCC
Confidence 334444 899999999988888888854 4555667787622222 566788888887776643
No 148
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=67.85 E-value=16 Score=28.09 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=37.8
Q ss_pred cCCeEEEEecCCCCCc-HHHHHHHHHHHH-HcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDS-EAELNAVRIAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT-~~Ei~~i~~~c~-~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++|++|++|+-.-.. +...+.+.+++. ..++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP-YFETS--AKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 5899999999975431 112344566666 55665 44333 5668898888888877664
No 149
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=67.67 E-value=15 Score=32.33 Aligned_cols=18 Identities=22% Similarity=-0.071 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHHHcCCC
Q 042073 58 SEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 58 T~~Ei~~i~~~c~~~g~~ 75 (225)
+-.|.....+.+++.|++
T Consensus 250 ~~~e~~r~~~~l~~~~i~ 267 (349)
T 3ug7_A 250 SILESERAMKALQKYGIP 267 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 344555555555555553
No 150
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=67.62 E-value=18 Score=30.32 Aligned_cols=142 Identities=14% Similarity=0.240 Sum_probs=72.7
Q ss_pred CCCCCccCCCCCccccc------cccHHHHHHhH--HHHHHHHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcC
Q 042073 3 GGGPQVVAGKPLDHAYL------NENVALVEAGC--VNLARHIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAG 73 (225)
Q Consensus 3 GGv~~~~lg~pl~~~l~------~eN~~al~~G~--~NL~~HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g 73 (225)
+|+....+|-|..+.+. .-+..||++|+ ..+...++.+|+ +++|+++-. +. + ......+ +.|.+.|
T Consensus 44 ~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~--~~-~-~~~~~~~-~~a~~aG 118 (262)
T 1rd5_A 44 CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLS--YY-K-PIMFRSL-AKMKEAG 118 (262)
T ss_dssp TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC--CS-H-HHHSCCT-HHHHHTT
T ss_pred cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe--cC-c-HHHHHHH-HHHHHcC
Confidence 45555555554432111 12234556664 234466777776 689977631 11 1 1111111 2288899
Q ss_pred CCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-----Hh-----ccCCC--CCCHHHH
Q 042073 74 AFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-----SY-----GASGV--EYSEEAE 141 (225)
Q Consensus 74 ~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-----IY-----GA~~V--~~s~~A~ 141 (225)
+..+.+.+ ...+-++.+++.+.+..-..-++.....+ .+.++.++. +| |-.+. .+.+...
T Consensus 119 adgv~v~d-------~~~~~~~~~~~~~~~~g~~~i~~~a~~t~-~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~ 190 (262)
T 1rd5_A 119 VHGLIVPD-------LPYVAAHSLWSEAKNNNLELVLLTTPAIP-EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVE 190 (262)
T ss_dssp CCEEECTT-------CBTTTHHHHHHHHHHTTCEECEEECTTSC-HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHH
T ss_pred CCEEEEcC-------CChhhHHHHHHHHHHcCCceEEEECCCCC-HHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHH
Confidence 97444422 22233556666665422223344555444 445555543 22 21233 5667788
Q ss_pred HHHHHHHHCCCCCCCeeE
Q 042073 142 KQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 142 ~~l~~~e~~G~~~lPVCm 159 (225)
+.++++.+.- ++||+.
T Consensus 191 ~~i~~v~~~~--~~pI~v 206 (262)
T 1rd5_A 191 SLIQEVKKVT--NKPVAV 206 (262)
T ss_dssp HHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHhhc--CCeEEE
Confidence 8888888763 789987
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=67.32 E-value=13 Score=33.26 Aligned_cols=71 Identities=23% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCe-EEEEecCCCCC-cHHHH----HHHHHHHHHcCC-----CeEEEccccc-cC------chh-hH
Q 042073 31 VNLARHIANTKAYGVN-VVVAVNMFATD-SEAEL----NAVRIAAMAAGA-----FDAVVCSHHA-HG------GKG-AV 91 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvp-vVVAIN~F~~D-T~~Ei----~~i~~~c~~~g~-----~~~avs~~wa-~G------G~G-a~ 91 (225)
.....|+..++..|+| +||++|+-..- .++.+ +.+++++++.|. + +..+..+. .+ ++| -.
T Consensus 105 ~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~SA~~g~n~~~~~~~~g~i~ 183 (397)
T 1d2e_A 105 PQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP-IIVGSALCALEQRDPELGLKSVQ 183 (397)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC-EEECCHHHHHTTCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc-EEEeehhhcccccCCCccCCcHH
Confidence 4567788888889999 68999997653 23322 345667777774 4 55544433 11 234 45
Q ss_pred HHHHHHHHHhh
Q 042073 92 DLGIAVQRACE 102 (225)
Q Consensus 92 ~LA~~Vv~~~e 102 (225)
+|-+.+.+.+.
T Consensus 184 ~Ll~~l~~~~p 194 (397)
T 1d2e_A 184 KLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhCC
Confidence 67777766553
No 152
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=67.19 E-value=15 Score=29.13 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=43.1
Q ss_pred HHHH-HHHHHHHhh--cCCeEEEEecCCCCCcHH--------------HHHHHHHHHHHcCCCeEEEcccccc-CchhhH
Q 042073 30 CVNL-ARHIANTKA--YGVNVVVAVNMFATDSEA--------------ELNAVRIAAMAAGAFDAVVCSHHAH-GGKGAV 91 (225)
Q Consensus 30 ~~NL-~~HIeNi~~--fGvpvVVAIN~F~~DT~~--------------Ei~~i~~~c~~~g~~~~avs~~wa~-GG~Ga~ 91 (225)
+.++ ..-++.+++ -++|+|++.|+..-..+. ..+.+.+++++.|...+.. .=++ .|+|-.
T Consensus 115 ~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e--~SAk~~~~gv~ 192 (205)
T 1gwn_A 115 LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE--CSALQSENSVR 192 (205)
T ss_dssp HHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE--CCTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE--eeeccCCcCHH
Confidence 4455 333444544 389999999997643211 1234567788877422433 3355 788888
Q ss_pred HHHHHHHHHh
Q 042073 92 DLGIAVQRAC 101 (225)
Q Consensus 92 ~LA~~Vv~~~ 101 (225)
+|-+.+++.+
T Consensus 193 ~lf~~l~~~~ 202 (205)
T 1gwn_A 193 DIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877754
No 153
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=66.58 E-value=17 Score=29.46 Aligned_cols=60 Identities=18% Similarity=0.039 Sum_probs=38.0
Q ss_pred HhhcCCeEEEEecCCCCCcHHHHHHHHHHH----------------------------HHcCC--CeEEEccccccCchh
Q 042073 40 TKAYGVNVVVAVNMFATDSEAELNAVRIAA----------------------------MAAGA--FDAVVCSHHAHGGKG 89 (225)
Q Consensus 40 i~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c----------------------------~~~g~--~~~avs~~wa~GG~G 89 (225)
..+.++|+++++|+....+..+++.+.+++ ++.+. . +.. .=++-|+|
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~--~SA~~~~g 243 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVR-VLY--LSAKTREG 243 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCC-CEE--CCTTTCTT
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCccc-ceE--EEecCccc
Confidence 345689999999999877776655444432 22232 2 222 22667788
Q ss_pred hHHHHHHHHHHhh
Q 042073 90 AVDLGIAVQRACE 102 (225)
Q Consensus 90 a~~LA~~Vv~~~e 102 (225)
-.+|-+.+.+.+.
T Consensus 244 i~~l~~~i~~~~~ 256 (262)
T 1yrb_A 244 FEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8887777776654
No 154
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=66.12 E-value=14 Score=27.66 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHHHH-HHHHHHhhc--CCeEEEEecCCCCCcH-HH-------------HHHHHHHHHHcCCCeEEEccccccCchhhHH
Q 042073 30 CVNLA-RHIANTKAY--GVNVVVAVNMFATDSE-AE-------------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVD 92 (225)
Q Consensus 30 ~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT~-~E-------------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~ 92 (225)
+.++. ..++.++++ ++|+++++|+..-..+ .. .+...+++++.|...+..+ =++=|+|-.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--Sa~~g~gi~~ 169 (186)
T 1mh1_A 92 FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC--SALTQRGLKT 169 (186)
T ss_dssp HHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC--CTTTCTTHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe--cCCCccCHHH
Confidence 44554 345555554 8999999999643211 11 1234567777886224333 3456788889
Q ss_pred HHHHHHHHhhc
Q 042073 93 LGIAVQRACEN 103 (225)
Q Consensus 93 LA~~Vv~~~e~ 103 (225)
|-+.+++.+-+
T Consensus 170 l~~~l~~~~~~ 180 (186)
T 1mh1_A 170 VFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhc
Confidence 98888887753
No 155
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=66.09 E-value=25 Score=28.28 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=73.6
Q ss_pred HHHHhHHHHHHHHHHHhhcCCeEEEEe-cCCCC--CcHH-------HHHHHHHHHHHcCCCeEEEcccccc---Cc-hhh
Q 042073 25 LVEAGCVNLARHIANTKAYGVNVVVAV-NMFAT--DSEA-------ELNAVRIAAMAAGAFDAVVCSHHAH---GG-KGA 90 (225)
Q Consensus 25 al~~G~~NL~~HIeNi~~fGvpvVVAI-N~F~~--DT~~-------Ei~~i~~~c~~~g~~~~avs~~wa~---GG-~Ga 90 (225)
.-++.+..+++.|+..+.+|.+.||.- ..++. ++++ -++.+.+.+++.|+. +++-++-.. +. -..
T Consensus 79 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~~~~~~~ 157 (260)
T 1k77_A 79 REHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKR-ILVEALSPGVKPHYLFSS 157 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCCccCCCcCccCC
Confidence 346778899999999999999999863 33332 2332 334455667788996 888776221 11 112
Q ss_pred HHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh-Hhc--cCCC----CCCH---HHHHHHHHHHHCCCCC
Q 042073 91 VDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR-SYG--ASGV----EYSE---EAEKQIKMYTRQGFSG 154 (225)
Q Consensus 91 ~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~-IYG--A~~V----~~s~---~A~~~l~~~e~~G~~~ 154 (225)
.+-+.++++.+. +.++..++|. ..++.+=|++... |.. .+++ ..-. .-..-++.+++.||+.
T Consensus 158 ~~~~~~l~~~~~--~~~~g~~~D~~h~~~~~~d~~~~l~~~~~~i~~vH~~D~~~r~~~G~G~id~~~~~~~L~~~gy~g 235 (260)
T 1k77_A 158 QYQALAIVEEVA--RDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGEINYPWLFRLFDEVGYQG 235 (260)
T ss_dssp HHHHHHHHHHHC--CTTEEEEEEHHHHHHHTCCHHHHHHHTTTSEEEEEECCTTTCCCSSSSSSCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhC--CCCEEEEeeHHHHHhhCCCHHHHHHHhhhheeEEEECCCCCCCCCCCCccCHHHHHHHHHHcCCCc
Confidence 333444555553 2346666653 3455666666655 432 1221 1000 1345566677777764
Q ss_pred CCeeE
Q 042073 155 LPFCM 159 (225)
Q Consensus 155 lPVCm 159 (225)
|+++
T Consensus 236 -~i~~ 239 (260)
T 1k77_A 236 -WIGC 239 (260)
T ss_dssp -CEEE
T ss_pred -eEEE
Confidence 4544
No 156
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=65.80 E-value=13 Score=30.42 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=18.0
Q ss_pred HhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 40 TKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 40 i~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
++++|+.+ ++++-+...+.++++...+.|+++|++
T Consensus 72 l~~~gl~i-~~~~~~~~~~~~~~~~~i~~A~~lGa~ 106 (262)
T 3p6l_A 72 AASKGIKI-VGTGVYVAEKSSDWEKMFKFAKAMDLE 106 (262)
T ss_dssp HHHTTCEE-EEEEEECCSSTTHHHHHHHHHHHTTCS
T ss_pred HHHcCCeE-EEEeccCCccHHHHHHHHHHHHHcCCC
Confidence 34556643 334444334455555556666666665
No 157
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=65.10 E-value=13 Score=32.14 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
+....+-|+.+++.|+++.+-.--.+..+++|+..+.+++++.|+. +...+.
T Consensus 145 ~~~v~~~i~~l~~~g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~~ 196 (340)
T 1tv8_A 145 ATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIE-IRFIEF 196 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTTTGGGHHHHHHHHHHTTCC-EEEEEC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEEe
Confidence 5666677777778888765544445555778999999999999996 555443
No 158
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=64.15 E-value=16 Score=29.17 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=44.7
Q ss_pred HHHHHHhhc--CCeEEEEecCCCCCc-----HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 35 RHIANTKAY--GVNVVVAVNMFATDS-----EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 35 ~HIeNi~~f--GvpvVVAIN~F~~DT-----~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
.-++.++.. ++|+++++|+-.-.. .++.+.+.+++...|.. +.+-+.=++-|+|-.+|-+.+++.+.+
T Consensus 131 ~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 131 NLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP-IKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSC-EEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCC-ceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 345566665 899999999965422 23344677788877721 223344467788988888888877653
No 159
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=63.51 E-value=64 Score=26.85 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=72.4
Q ss_pred HHHHHhhcCCeEEEEe-------------cCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 36 HIANTKAYGVNVVVAV-------------NMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 36 HIeNi~~fGvpvVVAI-------------N~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
..+-+++.++|+|..- -++..|...+...+.++..+.|.+.+++-. ....-+.++++...+.++
T Consensus 88 ~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~---~~~~~~~~~~~~~~~~l~ 164 (358)
T 3hut_A 88 AGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIG---VTTDWGLSSAQAFRKAFE 164 (358)
T ss_dssp HHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEE---ESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCCEEEEEe---cCcHHHHHHHHHHHHHHH
Confidence 3455677999998751 134456677888888998888998777653 334456777888888776
Q ss_pred cCCCCc--ccccCC-CCCHHHHHHHHHhHhccCCCC---CCHHHHHHHHHHHHCCCCCCCeeE
Q 042073 103 NVTQPL--KFLYPS-DVSIKEKIDTIARSYGASGVE---YSEEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 103 ~~~~~f--~~lY~~-~~~i~eKI~~IA~IYGA~~V~---~s~~A~~~l~~~e~~G~~~lPVCm 159 (225)
+..-.+ ...|+. ..+...-++++.. -+.+.|. ..+.|..-++++.++|+ +.|+..
T Consensus 165 ~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~d~i~~~~~~~~a~~~~~~~~~~g~-~~p~~~ 225 (358)
T 3hut_A 165 LRGGAVVVNEEVPPGNRRFDDVIDEIED-EAPQAIYLAMAYEDAAPFLRALRARGS-ALPVYG 225 (358)
T ss_dssp HTTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEESCHHHHHHHHHHHHHTTC-CCCEEE
T ss_pred HcCCEEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEccCchHHHHHHHHHHHcCC-CCcEEe
Confidence 532211 123332 2344444444432 1222221 12478888999999999 578753
No 160
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=63.11 E-value=35 Score=25.26 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCc--HHHHHHHHHHHHHcCCC------eEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 35 RHIANTKAYGVNVVVAVNMFATDS--EAELNAVRIAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~F~~DT--~~Ei~~i~~~c~~~g~~------~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
.+++.++..++|+++++|+..-.. .+++ .+..++.+.. .+.+-+.=++=|+|-.+|-+.+++.++.
T Consensus 98 ~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 98 EAINHAKAANVPIIVAINKMDKPEANPDRV---MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHGGGSCCEEEEEETTTSSCSCHHHH---HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEECccCCcCCHHHH---HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 345566778999999999976532 2333 2222322210 0222233467789999999999988764
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=63.07 E-value=17 Score=30.15 Aligned_cols=59 Identities=17% Similarity=0.050 Sum_probs=39.8
Q ss_pred CCeEEEEecCCCC--Cc-HHHH-----HHHHHHHHHcCCCeEEEccccccC---chhhHHHHHHHHHHhhc
Q 042073 44 GVNVVVAVNMFAT--DS-EAEL-----NAVRIAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACEN 103 (225)
Q Consensus 44 GvpvVVAIN~F~~--DT-~~Ei-----~~i~~~c~~~g~~~~avs~~wa~G---G~Ga~~LA~~Vv~~~e~ 103 (225)
+.|+||++|+-.- .+ ++.+ +.+++++++.|.+ +.+-+.=+.+ ++|-.+|-++|.+.+.+
T Consensus 139 ~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7899999998533 22 2222 3467777777886 4433332333 78999999999998875
No 162
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=62.99 E-value=20 Score=26.84 Aligned_cols=73 Identities=8% Similarity=-0.054 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHh----hcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC--eEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTK----AYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~----~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~--~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++.+.+..+. ..+.|+++++|+-.-..+.+.+.+.+........ .+.+-+.=++-|+|-.+|-+.+.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 101 MSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 455556666654 3789999999997643222222233332211110 112223335668888888888877664
No 163
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=62.46 E-value=51 Score=30.15 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=53.2
Q ss_pred HHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 23 VALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 23 ~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
++.+..|..-|......+ ...|.++++|+-...+.+.++.+++++++.|.. +..++ +.=|+|-.+|.+.+.+.+.
T Consensus 250 ~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~-vi~iS--A~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 250 LKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEEEAVKALADALAREGLA-VLPVS--ALTGAGLPALKEALHALVR 324 (416)
T ss_dssp HHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhHHHHHHHHHHHHhcCCe-EEEEE--CCCccCHHHHHHHHHHHHH
Confidence 344555554444332222 358999999998877777778888888877876 55444 3457899999999999887
Q ss_pred c
Q 042073 103 N 103 (225)
Q Consensus 103 ~ 103 (225)
+
T Consensus 325 ~ 325 (416)
T 1udx_A 325 S 325 (416)
T ss_dssp T
T ss_pred h
Confidence 5
No 164
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=62.02 E-value=37 Score=28.18 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=45.4
Q ss_pred cHHHHHHhH-HHHHHHHHHHhh-cCCeEEEEe---cCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHH
Q 042073 22 NVALVEAGC-VNLARHIANTKA-YGVNVVVAV---NMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 96 (225)
Q Consensus 22 N~~al~~G~-~NL~~HIeNi~~-fGvpvVVAI---N~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~ 96 (225)
|+..++.|- .-+.+-|+.+++ .+ |+.|-+ .-+- |++|+..+.+.|.+.|+.-+..++.|..||. ..+..+.
T Consensus 92 N~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l--~~~~~~~~a~~a~eaGad~I~tstg~~~gga-~~~~i~~ 167 (225)
T 1mzh_A 92 NLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIVETPYL--NEEEIKKAVEICIEAGADFIKTSTGFAPRGT-TLEEVRL 167 (225)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEECCGGGC--CHHHHHHHHHHHHHHTCSEEECCCSCSSSCC-CHHHHHH
T ss_pred cHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC-CHHHHHH
Confidence 444444332 223445677766 45 777765 3322 4678999999999999973333555655553 4455566
Q ss_pred HHHHh
Q 042073 97 VQRAC 101 (225)
Q Consensus 97 Vv~~~ 101 (225)
+.+..
T Consensus 168 v~~~v 172 (225)
T 1mzh_A 168 IKSSA 172 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 165
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=61.84 E-value=75 Score=28.54 Aligned_cols=156 Identities=11% Similarity=-0.024 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHH---HcCCCeEEEcccc---ccCchh---hHHHHHHHH
Q 042073 29 GCVNLARHIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAM---AAGAFDAVVCSHH---AHGGKG---AVDLGIAVQ 98 (225)
Q Consensus 29 G~~NL~~HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~---~~g~~~~avs~~w---a~GG~G---a~~LA~~Vv 98 (225)
|+....+++..+++ .+.|++|-|+ - .+.+|.....+.+. +.|+. ...-|.- .+||.. ..++..+++
T Consensus 110 G~~~~~~~l~~~~~~~~~pvivsI~--G-~~~~d~~~~a~~l~~~~~~g~d-~ielNisCPn~~gg~~l~~~~e~~~~il 185 (354)
T 4ef8_A 110 GFDFYLAYAAEQHDYGKKPLFLSMS--G-LSMRENVEMCKRLAAVATEKGV-ILELNLSCPNVPGKPQVAYDFDAMRQCL 185 (354)
T ss_dssp CHHHHHHHHHHTCCTTTCCEEEEEC--C-SSHHHHHHHHHHHHHHHHHHCC-EEEEECSSCCSTTSCCGGGSHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEec--c-CCHHHHHHHHHHHhhhhhcCCC-EEEEeCCCCCCCCchhhccCHHHHHHHH
Confidence 44444555555544 4788877664 3 34666665555555 45665 3332322 344432 235566666
Q ss_pred HHhhcCC-CC--cccccCCCCCHHHHHHHHHh-H--hc-cCCCC----------------------------CC-----H
Q 042073 99 RACENVT-QP--LKFLYPSDVSIKEKIDTIAR-S--YG-ASGVE----------------------------YS-----E 138 (225)
Q Consensus 99 ~~~e~~~-~~--f~~lY~~~~~i~eKI~~IA~-I--YG-A~~V~----------------------------~s-----~ 138 (225)
+++.+.. .+ .|.--+ .++ +.+..+|. . +| ++.|. || +
T Consensus 186 ~av~~~~~~PV~vKi~p~--~d~-~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p 262 (354)
T 4ef8_A 186 TAVSEVYPHSFGVKMPPY--FDF-AHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLP 262 (354)
T ss_dssp HHHHHHCCSCEEEEECCC--CSH-HHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHH
T ss_pred HHHHHhhCCCeEEEecCC--CCH-HHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCch
Confidence 6654321 11 222212 233 34566666 4 33 55443 22 4
Q ss_pred HHHHHHHHHHHCCCCCCCeeEeecCCCcCCCCCCCceEEeeEEEeecCCceeeeecccccccCC
Q 042073 139 EAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLG 202 (225)
Q Consensus 139 ~A~~~l~~~e~~G~~~lPVCmAKTqyS~Sdd~P~~f~~~vrdv~~~~GAgFiv~~~G~i~tMPG 202 (225)
.+.+.+.++.+. ..++||+..===. .+++ +.+. +.+||-+|..-++-+..-|.
T Consensus 263 ~a~~~i~~v~~~-~~~ipII~~GGI~-----s~~d----a~~~-l~aGAd~V~vgra~l~~GP~ 315 (354)
T 4ef8_A 263 TALANINAFYRR-CPGKLIFGCGGVY-----TGED----AFLH-VLAGASMVQVGTALQEEGPS 315 (354)
T ss_dssp HHHHHHHHHHHH-CTTSEEEEESCCC-----SHHH----HHHH-HHHTEEEEEECHHHHHHCTT
T ss_pred HHHHHHHHHHHh-CCCCCEEEECCcC-----CHHH----HHHH-HHcCCCEEEEhHHHHHhCHH
Confidence 677888888887 6688987531100 2222 1111 34677666666655544343
No 166
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=61.72 E-value=14 Score=31.42 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=40.9
Q ss_pred ccHHHHHHhHH-HHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 21 ENVALVEAGCV-NLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 21 eN~~al~~G~~-NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
-|+.+++.|-. -+.+-|.-++. .++||++.--.. |++|+....+.|.++|+..+-.|+.|.
T Consensus 87 inig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~L---t~eei~~a~~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 87 APIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYL---RDEERYTLYDIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp CCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC---CHHHHHHHHHHHHHHTCSEEECCCSCC
T ss_pred cchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCC---CHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 46666665522 23444444443 466777655544 488999999999999998556677898
No 167
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=61.62 E-value=46 Score=28.87 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 44 GVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 44 GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
++|++|=++- .-|++|+..+.+.+.+.|+.-+.+++.
T Consensus 211 ~~Pv~vKi~~--~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 211 YVPIAVKIAP--DLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp CCCEEEECCS--CCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCceEEEecC--CCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 6899997663 235678888888899999985556655
No 168
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=61.58 E-value=4.8 Score=29.58 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=36.2
Q ss_pred HhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 40 TKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 40 i~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
++..++|+++++|+-.-..+ -+.+.+++ +.|...+..+. ++-|+|-.+|-+.+++.+
T Consensus 104 ~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~-~~~~~~~~~~S--a~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 104 LRRKGKPVILVATKVDDPKH--ELYLGPLY-GLGFGDPIPTS--SEHARGLEELLEAIWERL 160 (161)
T ss_dssp HHHHTCCEEEEEECCCSGGG--GGGCGGGG-GGSSCSCEECB--TTTTBSHHHHHHHHHHHC
T ss_pred HHhcCCCEEEEEECcccccc--hHhHHHHH-hCCCCCeEEEe--cccCCChHHHHHHHHHhC
Confidence 44478999999999754332 23345555 56762133333 667888888887776653
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=61.40 E-value=17 Score=33.06 Aligned_cols=67 Identities=24% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCC--cHHHHHHHHHHHHHc-----CCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 34 ARHIANTKAYGVNVVVAVNMFATD--SEAELNAVRIAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~D--T~~Ei~~i~~~c~~~-----g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
.++++-++..|.|+|+++|+..-. .+...+.+.+++++. +++ +..+. ++=|+|-.+|-+.+.+.+++
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP-ILFMS--ALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC-EEECC--TTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC-EEEEc--CCCCcCHHHHHHHHHHHHHH
Confidence 344555667999999999997642 223344455555543 454 44443 45588888888888887764
No 170
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=61.37 E-value=25 Score=27.01 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=43.9
Q ss_pred HHHHH-HHHHHHhhc--CCeEEEEecCCCCCcHH--------------HHHHHHHHHHHcCCCeEEEccccccCchhhHH
Q 042073 30 CVNLA-RHIANTKAY--GVNVVVAVNMFATDSEA--------------ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVD 92 (225)
Q Consensus 30 ~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT~~--------------Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~ 92 (225)
+.++. ..++.++.+ ++|+||++|+-.-..+. ..+...++++..|...+.. .=++=|+|-.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~Sa~~g~gi~~ 184 (201)
T 2q3h_A 107 FQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE--CSALTQKNLKE 184 (201)
T ss_dssp HHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE--CCTTTCTTHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE--EecCCCCCHHH
Confidence 44554 345555543 89999999997542211 1234566777777732333 33566788888
Q ss_pred HHHHHHHHhh
Q 042073 93 LGIAVQRACE 102 (225)
Q Consensus 93 LA~~Vv~~~e 102 (225)
|-+.+++.+.
T Consensus 185 l~~~l~~~~~ 194 (201)
T 2q3h_A 185 VFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777654
No 171
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=61.34 E-value=34 Score=28.73 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=60.3
Q ss_pred HHHHhHHHHHHHHHHHhhcCCeEEEEec-C--------CCCC----cHH-------HHHHHHHHHHHcCCCeEEEccccc
Q 042073 25 LVEAGCVNLARHIANTKAYGVNVVVAVN-M--------FATD----SEA-------ELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 25 al~~G~~NL~~HIeNi~~fGvpvVVAIN-~--------F~~D----T~~-------Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
.-++.+..+++.|+..+.+|.+.||..- . |+.+ +++ -++.+.+.+++.|+. +++-+++.
T Consensus 105 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 183 (340)
T 2zds_A 105 VRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVR-FAHEVHPS 183 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence 3467789999999999999999998742 1 1111 222 233445567788996 88888765
Q ss_pred cCchhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh
Q 042073 85 HGGKGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR 127 (225)
Q Consensus 85 ~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~ 127 (225)
....- .+-+..+++.+.. ..++..+||. ..++.+=|++...
T Consensus 184 ~~~~~-~~~~~~ll~~v~~-~~~vg~~~D~~H~~~~g~d~~~~l~~~~~ 230 (340)
T 2zds_A 184 EIAYD-YWTTHRALEAVGH-RPAFGLNFDPSHFVWQDLDPVGFLWDFRD 230 (340)
T ss_dssp SSCCS-HHHHHHHHHHTTT-CTTEEEEECCHHHHHTTCCHHHHHHHTGG
T ss_pred cccCC-HHHHHHHHHhcCC-CCCeeEEEchhhHHHhCCCHHHHHHHHHh
Confidence 44332 3333455555531 2347777765 2344555555443
No 172
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=60.75 E-value=14 Score=33.80 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcCCe-EEEEecCCCCCc----HHHH----HHHHHHHHHcCCC---eEEEccccccCchhhHHH
Q 042073 31 VNLARHIANTKAYGVN-VVVAVNMFATDS----EAEL----NAVRIAAMAAGAF---DAVVCSHHAHGGKGAVDL 93 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvp-vVVAIN~F~~DT----~~Ei----~~i~~~c~~~g~~---~~avs~~wa~GG~Ga~~L 93 (225)
....+|+..++..|+| +||++|+-...+ ++.. +.+.+++++.|.. .+.+-..=+.=|+|-.+|
T Consensus 141 ~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 141 GQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred chHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence 3678899999999999 999999976421 2222 3345556666652 112222233446665554
No 173
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=60.60 E-value=17 Score=32.41 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCC-eEEEEecCCCCCcHHH----HHHHHHHHHH---cCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 31 VNLARHIANTKAYGV-NVVVAVNMFATDSEAE----LNAVRIAAMA---AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 31 ~NL~~HIeNi~~fGv-pvVVAIN~F~~DT~~E----i~~i~~~c~~---~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+....|+..++.+|+ |+||++|+-..-++++ ++.+++++++ .+++ +.....+ =|+|-.+|-+.+.+.+.
T Consensus 123 ~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA~--~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 123 PQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP-IIPISAL--HGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECBTT--TTBSHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEEeeCC--CCCCHHHHHHHHHHhCC
Confidence 456778888888887 6899999987655543 3455666554 3554 4444443 46888888888877654
No 174
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=60.27 E-value=14 Score=33.03 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCC-eEEEEecCCCCCcH----HHHHHHHHHHHH---cCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 31 VNLARHIANTKAYGV-NVVVAVNMFATDSE----AELNAVRIAAMA---AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 31 ~NL~~HIeNi~~fGv-pvVVAIN~F~~DT~----~Ei~~i~~~c~~---~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.-..|+..++.+|+ |+||++|+-..-++ +..+.+++++++ .++. +..+.. .=|+|-.+|-+.+.+.+.
T Consensus 121 ~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA--~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 121 PQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAP-IIPISA--HHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCC-EEEC--------CHHHHHHHHHHHSC
T ss_pred chhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCe-EEEeeC--CCCCCHHHHHHHHHHhCC
Confidence 455678887888887 68999999765333 234566677664 2454 444443 447888888888877664
No 175
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=60.01 E-value=43 Score=27.38 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=58.2
Q ss_pred HHHHhHHHHHHHHHHHhhcCCeEEEEecCCCC--CcHHH-------HHHHHHHHHHcCCCeEEEcc-----ccccCchhh
Q 042073 25 LVEAGCVNLARHIANTKAYGVNVVVAVNMFAT--DSEAE-------LNAVRIAAMAAGAFDAVVCS-----HHAHGGKGA 90 (225)
Q Consensus 25 al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~--DT~~E-------i~~i~~~c~~~g~~~~avs~-----~wa~GG~Ga 90 (225)
..++.+..+++.|+..+.+|.+.||..--.+. ++++. ++.+.+.+++.|+. +++-+ ++..-. ..
T Consensus 87 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~n~~~~~~~~~-~~ 164 (269)
T 3ngf_A 87 REQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGIT-VLVEPLNTRNMPGYFI-VH 164 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSC-CC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCcccCccchh-cC
Confidence 35677889999999999999999886221222 33333 33445567788996 77764 211111 23
Q ss_pred HHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHHh
Q 042073 91 VDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIAR 127 (225)
Q Consensus 91 ~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA~ 127 (225)
.+-+..+++.+. +..+..++|. ..++.+=|++...
T Consensus 165 ~~~~~~l~~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 205 (269)
T 3ngf_A 165 QLEAVGLVKRVN--RPNVAVQLDLYHAQIMDGDLTRLIEKMNG 205 (269)
T ss_dssp HHHHHHHHHHHC--CTTEEEEEEHHHHHHHTCCHHHHHHHTTT
T ss_pred HHHHHHHHHHhC--CCCCCeEEEhhhHHhhCCCHHHHHHHhhh
Confidence 344455556553 3447776652 3455555555544
No 176
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=59.35 E-value=29 Score=28.36 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEe-cCCCCCcHHHHHHHHHHHHHcCCCeEEEcccc
Q 042073 31 VNLARHIANTKAYGVNVVVAV-NMFATDSEAELNAVRIAAMAAGAFDAVVCSHH 83 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAI-N~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~w 83 (225)
..+++.|+-.+.+|.|.||.- -.+..+ .-+..+.+.+++.|+. +++-+++
T Consensus 84 ~~~~~~i~~A~~lGa~~v~~~~g~~~~~--~~l~~l~~~a~~~Gv~-l~lEn~~ 134 (264)
T 1yx1_A 84 PELEPTLRRAEACGAGWLKVSLGLLPEQ--PDLAALGRRLARHGLQ-LLVENDQ 134 (264)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEEECCCSS--CCHHHHHHHHTTSSCE-EEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcH--HHHHHHHHHHHhcCCE-EEEecCC
Confidence 456666666666666666532 222221 1455555666666664 5555553
No 177
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=59.26 E-value=35 Score=24.96 Aligned_cols=71 Identities=11% Similarity=-0.052 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcH---HHHHHHH--HHHHHcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSE---AELNAVR--IAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~---~Ei~~i~--~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.+.+..+.+ .++|+++++|+-.-..+ +|+.... +++++.++. +. +.=++-|+|-.+|-+.+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 90 IGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ-IF--KTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE-EE--ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE-EE--ECcCCCCcCHHHHHHHHHHH
Confidence 3344444444432 68999999999754333 3332211 112233442 32 33456678888888888887
Q ss_pred hhc
Q 042073 101 CEN 103 (225)
Q Consensus 101 ~e~ 103 (225)
+.+
T Consensus 167 i~~ 169 (171)
T 1upt_A 167 LKS 169 (171)
T ss_dssp HHT
T ss_pred Hhh
Confidence 753
No 178
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=58.88 E-value=24 Score=25.83 Aligned_cols=70 Identities=9% Similarity=-0.044 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.+.+..+.. .+.|+++++|+-.-..+.+.+.+.+... ..++. + -+.=++-|+|-.+|-+.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 83 VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWY-I--QATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE-E--EECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEE-E--EEcccCCCcCHHHHHHHHHHH
Confidence 4555555555543 4899999999976543322222222211 12222 2 233356788888888888876
Q ss_pred hh
Q 042073 101 CE 102 (225)
Q Consensus 101 ~e 102 (225)
+.
T Consensus 160 i~ 161 (164)
T 1r8s_A 160 LR 161 (164)
T ss_dssp C-
T ss_pred Hh
Confidence 64
No 179
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=58.80 E-value=25 Score=27.16 Aligned_cols=69 Identities=12% Similarity=-0.038 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHh--hcCCeEEEEecCCCCCc-------HHHH--HHHHHHHH----HcCCCeEEEccccccCchhhHH
Q 042073 28 AGCVNLARHIANTK--AYGVNVVVAVNMFATDS-------EAEL--NAVRIAAM----AAGAFDAVVCSHHAHGGKGAVD 92 (225)
Q Consensus 28 ~G~~NL~~HIeNi~--~fGvpvVVAIN~F~~DT-------~~Ei--~~i~~~c~----~~g~~~~avs~~wa~GG~Ga~~ 92 (225)
.-+.++.+.++.++ .-++|+|++.|+..--. ..++ +...++++ +.++. +..+.... +|-.+
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~e~Sa~~---~~v~~ 186 (196)
T 3llu_A 111 EALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS-FYLTSIYD---HSIFE 186 (196)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE-EEEECTTS---THHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc-eEEEEech---hhHHH
Confidence 34556666666653 35899999999975322 2222 12345555 55664 54444443 66666
Q ss_pred HHHHHHHH
Q 042073 93 LGIAVQRA 100 (225)
Q Consensus 93 LA~~Vv~~ 100 (225)
+-+.+++.
T Consensus 187 ~f~~l~~~ 194 (196)
T 3llu_A 187 AFSKVVQK 194 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 180
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=58.36 E-value=78 Score=26.35 Aligned_cols=119 Identities=7% Similarity=-0.045 Sum_probs=70.4
Q ss_pred HHHHhhcCCeEEEEe-------------cCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 37 IANTKAYGVNVVVAV-------------NMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 37 IeNi~~fGvpvVVAI-------------N~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
.+-++++++|+|..- -++..|...+...+.+++.+.|.+.+++-. .+ ..-+.+.++.+.+.+++
T Consensus 89 ~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~--~~-~~~g~~~~~~~~~~l~~ 165 (368)
T 4eyg_A 89 APLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLT--SD-YAPGNDALAFFKERFTA 165 (368)
T ss_dssp HHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE--ES-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEe--cC-chHhHHHHHHHHHHHHH
Confidence 345667999988752 133456677888899999999998776653 33 33446677777777764
Q ss_pred CCCC--cccccCCC-CCHHHHHHHHHhHhccCCCCC---CHHHHHHHHHHHHCCCCC--CCeeE
Q 042073 104 VTQP--LKFLYPSD-VSIKEKIDTIARSYGASGVEY---SEEAEKQIKMYTRQGFSG--LPFCM 159 (225)
Q Consensus 104 ~~~~--f~~lY~~~-~~i~eKI~~IA~IYGA~~V~~---s~~A~~~l~~~e~~G~~~--lPVCm 159 (225)
..-. ....|+.+ .+...-+++|.. -+++-|.+ ...+..-++++.++|+.. +|+..
T Consensus 166 ~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~ 228 (368)
T 4eyg_A 166 GGGEIVEEIKVPLANPDFAPFLQRMKD-AKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIG 228 (368)
T ss_dssp TTCEEEEEEEECSSSCCCHHHHHHHHH-HCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEE
T ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHh-cCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEe
Confidence 2211 12233322 234444444432 12333322 346778888899999864 66643
No 181
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=58.32 E-value=15 Score=28.70 Aligned_cols=70 Identities=10% Similarity=-0.052 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHHHcC--------------CCeEEEccccccCchhhH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAMAAG--------------AFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g--------------~~~~avs~~wa~GG~Ga~ 91 (225)
+.++...++.+.+ .++|+|++.|+-.-......+.+++++.... ...+.+-+.=++-|+|-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 187 (198)
T 1f6b_A 108 LLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187 (198)
T ss_dssp HHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHH
T ss_pred HHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHH
Confidence 4555555655532 6899999999965432111233445544221 111233344456678877
Q ss_pred HHHHHHHH
Q 042073 92 DLGIAVQR 99 (225)
Q Consensus 92 ~LA~~Vv~ 99 (225)
+|-+.+++
T Consensus 188 ~l~~~l~~ 195 (198)
T 1f6b_A 188 EGFRWMAQ 195 (198)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77666654
No 182
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=58.21 E-value=23 Score=28.67 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKA----YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
-|.++....+.+++ -++|+|++.|+-.-..+.+ .+..+.++...++. +..+ =|+=|+|-.+|-+.+++.+.
T Consensus 126 sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~--SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 126 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIET--SAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEE--eCCCCCCHHHHHHHHHHHHH
Confidence 34455444444432 4899999999975432111 22344567777875 4433 35668999998888887664
No 183
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=58.11 E-value=56 Score=27.11 Aligned_cols=116 Identities=16% Similarity=0.044 Sum_probs=66.9
Q ss_pred HhHHHHHHHHHHHhh-cCCeE-EEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCC
Q 042073 28 AGCVNLARHIANTKA-YGVNV-VVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 105 (225)
Q Consensus 28 ~G~~NL~~HIeNi~~-fGvpv-VVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~ 105 (225)
.++.++.+.++.+++ .++++ -|.+|++.+... -+.+.++++..|.+ +. ...-.+ ..+.++...+
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~--~~~~~~l~~~~g~~-~l-~~Ip~~---------~~~~~a~~~g- 224 (289)
T 2afh_E 159 YAANNISKGIVKYANSGSVRLGGLICNSRNTDRE--DELIIALANKLGTQ-MI-HFVPRD---------NVVQRAEIRR- 224 (289)
T ss_dssp HHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH--HHHHHHHHHHHTSC-EE-EEECCC---------HHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEecCCchhH--HHHHHHHHHHcCcc-cc-ccCCCc---------hhHHHHHHcC-
Confidence 456677777777654 68885 578899865433 34455666677875 42 222221 2333444332
Q ss_pred CCcccccCCCCCHHHHHHHHHh-HhccCC-CCCCHHHHHHHHHHHHCCCCCCCeeE
Q 042073 106 QPLKFLYPSDVSIKEKIDTIAR-SYGASG-VEYSEEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 106 ~~f~~lY~~~~~i~eKI~~IA~-IYGA~~-V~~s~~A~~~l~~~e~~G~~~lPVCm 159 (225)
.. =+.|..+.+...-++.+|+ +-+-.. ..+++.-.++++.+-. +|+.+=+||
T Consensus 225 ~~-v~~~~~~s~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (289)
T 2afh_E 225 MT-VIEYDPKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLM-EFGIMEVED 278 (289)
T ss_dssp SC-HHHHCTTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHHHH-HTTSSCCCC
T ss_pred CC-ceeeCCCCHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH-HhCceeeec
Confidence 11 2335556678888999999 765443 3345444444444444 466677886
No 184
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=57.84 E-value=22 Score=29.07 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
-|.|+.+.++.+++ -++|+|++-|+-.-..+. ..+...++|++.|+. +..+ =|+=|+|-.+|=+.+++.+.
T Consensus 100 Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~--SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 100 SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIET--SAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEE--BTTTTBSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEE--eCCCCcCHHHHHHHHHHHHH
Confidence 35666666666654 479999999996532221 234456888999986 4433 36778898888777777664
No 185
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=57.49 E-value=52 Score=29.96 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=54.9
Q ss_pred ccHHHHHHhHHHHHHHHHHHhh-cCCeEEEEecCCCCCc----HHHHHHHHHHHHHcCCCeEEEccccccCch----hhH
Q 042073 21 ENVALVEAGCVNLARHIANTKA-YGVNVVVAVNMFATDS----EAELNAVRIAAMAAGAFDAVVCSHHAHGGK----GAV 91 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~-fGvpvVVAIN~F~~DT----~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~----Ga~ 91 (225)
++.++.-.|...+.+|+..+.+ +++||++=+-+-.+.. +.-++...++|++.|-. -.+.|--||+. =-+
T Consensus 77 ~~~~~~i~ga~~~~~~v~~~A~~~~VPVaLHlDHg~~~~~~~i~~~i~a~~~~~~~~~~~--gFtSVMiDgS~~p~eENI 154 (358)
T 1dos_A 77 VPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKP--LFSSHMIDLSEESLQENI 154 (358)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSC--SCSEEEECCTTSCHHHHH
T ss_pred chhhhHHHhHHHHHHHHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHHHHHHHHhcccC--CCceEeecCCCCCHHHHH
Confidence 3567778888889999998754 9999999888886642 33344555667766632 23445555554 445
Q ss_pred HHHHHHHHHhh
Q 042073 92 DLGIAVQRACE 102 (225)
Q Consensus 92 ~LA~~Vv~~~e 102 (225)
++.++|++.+.
T Consensus 155 ~~Tkevv~~ah 165 (358)
T 1dos_A 155 EICSKYLERMS 165 (358)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68888888875
No 186
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=57.04 E-value=30 Score=26.23 Aligned_cols=71 Identities=10% Similarity=-0.062 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHH-----HHHcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIA-----AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~-----c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.+.+..+.+ -+.|+++++|+-.-..+.+.+.+.+. +.+.++. +. +.=++=|+|-.+|-+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 105 MGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWT-IV--KSSSKTGDGLVEGMDWLVER 181 (189)
T ss_dssp HHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-EE--ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceE-EE--EccCCCccCHHHHHHHHHHH
Confidence 3444455555433 48999999999765443222223222 1222332 22 33356678888888888887
Q ss_pred hhc
Q 042073 101 CEN 103 (225)
Q Consensus 101 ~e~ 103 (225)
+.+
T Consensus 182 i~~ 184 (189)
T 2x77_A 182 LRE 184 (189)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 187
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=56.89 E-value=49 Score=27.91 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHhHHHHHHHHHHHhhcCCeEEEEecCCC-CCcHHHHH-------HHHHHHHHcCCCe--EEEcccc
Q 042073 27 EAGCVNLARHIANTKAYGVNVVVAVNMFA-TDSEAELN-------AVRIAAMAAGAFD--AVVCSHH 83 (225)
Q Consensus 27 ~~G~~NL~~HIeNi~~fGvpvVVAIN~F~-~DT~~Ei~-------~i~~~c~~~g~~~--~avs~~w 83 (225)
++.+..+++.|+-.+.+|.+.||.- -.+ .++++.++ .+.+.|++.|+ . +++-+|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~~~l~~En~~ 168 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQP-MMPTITTHDEAKLVCDIFNQASDVIKAEGI-ATGFGYHNHN 168 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC-SCCCCCSHHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-cceEEEccCc
Confidence 5568899999999999999999873 222 24555543 45567788999 5 5665554
No 188
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=56.43 E-value=37 Score=30.12 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=63.8
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCC-------CCCcHHH-------HHHHHHHHHHcC--CCeEEEc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMF-------ATDSEAE-------LNAVRIAAMAAG--AFDAVVC 80 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F-------~~DT~~E-------i~~i~~~c~~~g--~~~~avs 80 (225)
.+..++-+.-++.+..+++.|+..+.+|.+.||.-=-+ ..|.++. +..+.+.+++.| +. +++-
T Consensus 102 ~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~-l~lE 180 (394)
T 1xla_A 102 GFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLR-IALE 180 (394)
T ss_dssp STTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEEC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEe
Confidence 45567777778999999999999999999988863111 2344433 344555566889 86 7777
Q ss_pred cccccCc--h--hhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHH
Q 042073 81 SHHAHGG--K--GAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTI 125 (225)
Q Consensus 81 ~~wa~GG--~--Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~I 125 (225)
++.-+.+ . ...+-+..+++.+.. ++.+..++|. ..++.+-|++.
T Consensus 181 ~~~~e~~~~~~~~t~~~~~~li~~v~~-pn~vgl~lD~~H~~~~g~d~~~~i~~~ 234 (394)
T 1xla_A 181 PKPNEPRGDIFLPTVGHGLAFIEQLEH-GDIVGLNPETGHEQMAGLNFTHGIAQA 234 (394)
T ss_dssp CCSSSSSSEESSCSHHHHHHHHTTCTT-GGGEEECCBHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCCCccccCCCHHHHHHHHHHhCC-CCceEEEEecCcccccCCCHHHHHHHH
Confidence 6632111 1 122333344444431 2126666654 34666656654
No 189
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=56.42 E-value=17 Score=31.97 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=26.2
Q ss_pred HhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 40 TKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 40 i~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
..+.|+|+|+.-=-| ++++++.|.++|++ +. +..+..|+-|-.=-..|++...
T Consensus 108 ~l~~Gv~vViGTTG~---~~e~~~~L~~aa~~--~~-~~~a~N~SiGv~ll~~l~~~aa 160 (288)
T 3ijp_A 108 AAQKSLIHIIGTTGF---SKTEEAQIADFAKY--TT-IVKSGNMSLGVNLLANLVKRAA 160 (288)
T ss_dssp HHHHTCEEEECCCCC---CHHHHHHHHHHHTT--SE-EEECSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEECCCC---CHHHHHHHHHHhCc--CC-EEEECCCcHHHHHHHHHHHHHH
Confidence 344566666643333 34555566666653 32 4555556555443333443333
No 190
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=56.12 E-value=29 Score=26.81 Aligned_cols=70 Identities=10% Similarity=-0.023 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.+.+..+.+ .++|+|+++|+-.-..+.+.+.+.+... +.++. + -+.=++-|+|-.+|-+.+++.
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~--~~~SA~~g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 112 VQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWY-V--QATCATQGTGLYDGLDWLSHE 188 (192)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE-E--EECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceE-E--EECcCCCcCCHHHHHHHHHHH
Confidence 4555666666543 4899999999976543322222222211 12222 2 233356688888888888776
Q ss_pred hh
Q 042073 101 CE 102 (225)
Q Consensus 101 ~e 102 (225)
+.
T Consensus 189 i~ 190 (192)
T 2b6h_A 189 LS 190 (192)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 191
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=56.05 E-value=18 Score=31.41 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=25.1
Q ss_pred HHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHH
Q 042073 36 HIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 97 (225)
Q Consensus 36 HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~V 97 (225)
|++...+.|+|+|+.-=-| |+++++.|.++|++ +. +..+..|+-|-.=-..|++..
T Consensus 89 ~~~~al~~G~~vVigTTG~---s~~~~~~L~~aa~~--~~-vv~a~N~s~Gv~l~~~~~~~a 144 (272)
T 4f3y_A 89 HLDAALRHDVKLVIGTTGF---SEPQKAQLRAAGEK--IA-LVFSANMSVGVNVTMKLLEFA 144 (272)
T ss_dssp HHHHHHHHTCEEEECCCCC---CHHHHHHHHHHTTT--SE-EEECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCC---CHHHHHHHHHHhcc--CC-EEEECCCCHHHHHHHHHHHHH
Confidence 3333344555555532222 34455555555543 22 445555555444333333333
No 192
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=55.94 E-value=17 Score=33.21 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCC--CcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFAT--DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~--DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
..+++||+-||.+||-+ +++|.|.. -++.-++.+.+.+++.|.. ++.+-.. -+|.....+.+.|..++++
T Consensus 103 ~v~~~hi~~ak~aGIDg-fal~w~~~~~~~d~~l~~~~~aA~~~g~k-~~f~~~~-y~~~~~~~~~~dv~~li~~ 174 (382)
T 4acy_A 103 EIIRKHIRMHIKANVGV-LSVTWWGESDYGNQSVSLLLDEAAKVGAK-VCFHIEP-FNGRSPQTVRENIQYIVDT 174 (382)
T ss_dssp HHHHHHHHHHHHHTEEE-EEEEECGGGGTTCHHHHHHHHHHHHHTCE-EEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCE-EEEEecCCCCchHHHHHHHHHHHHHcCCE-EEEEeec-CCCCChHHHHHHHHHHHHH
Confidence 35889999999999995 57899863 3456788888999998985 6654211 1344455677777777653
No 193
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=55.58 E-value=33 Score=28.00 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=9.1
Q ss_pred HHhHHHHHHHHHHHhhcCCeEE
Q 042073 27 EAGCVNLARHIANTKAYGVNVV 48 (225)
Q Consensus 27 ~~G~~NL~~HIeNi~~fGvpvV 48 (225)
++.+..|+++|+-.+.+|.++|
T Consensus 84 ~~~~~~~~~~i~~a~~lGa~~v 105 (270)
T 3aam_A 84 EKSVASLADDLEKAALLGVEYV 105 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEE
Confidence 3334444444444444444433
No 194
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=55.52 E-value=17 Score=28.91 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=45.9
Q ss_pred HHH-HHHHHHHHhhc--CCeEEEEecCCCCCcH--------------HHHHHHHHHHHHcCCCeEEEccccccCchh-hH
Q 042073 30 CVN-LARHIANTKAY--GVNVVVAVNMFATDSE--------------AELNAVRIAAMAAGAFDAVVCSHHAHGGKG-AV 91 (225)
Q Consensus 30 ~~N-L~~HIeNi~~f--GvpvVVAIN~F~~DT~--------------~Ei~~i~~~c~~~g~~~~avs~~wa~GG~G-a~ 91 (225)
+.+ +..-++.++.+ ++|+|++.|+-.-..+ -..+...++|++.|+..+..+ =++=|+| -.
T Consensus 114 ~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~--SA~~g~g~v~ 191 (214)
T 3q3j_B 114 VDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG--SAFTSEKSIH 191 (214)
T ss_dssp HHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC--CTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe--ccCCCcccHH
Confidence 444 34445555554 8999999998754221 123456678888888324433 3566887 78
Q ss_pred HHHHHHHHHhhc
Q 042073 92 DLGIAVQRACEN 103 (225)
Q Consensus 92 ~LA~~Vv~~~e~ 103 (225)
+|=+.+++.+..
T Consensus 192 ~lf~~l~~~~~~ 203 (214)
T 3q3j_B 192 SIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 888888877654
No 195
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=55.38 E-value=64 Score=27.52 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=63.7
Q ss_pred HHhHHHHHHHHHHHhhcCCeEEEEecC-C-----CCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 27 EAGCVNLARHIANTKAYGVNVVVAVNM-F-----ATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 27 ~~G~~NL~~HIeNi~~fGvpvVVAIN~-F-----~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.-+++..+.|+..++.|++|.+.|.. | ..-+.+++..+.+.+.+.|+..+.+++. -|. +.-+....+++.
T Consensus 116 ~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt--~G~-~~P~~~~~lv~~ 192 (295)
T 1ydn_A 116 AESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT--IGR-GTPDTVAAMLDA 192 (295)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET--TSC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC--CCC-cCHHHHHHHHHH
Confidence 334567777789999999999877765 4 1234677777777777999987888874 333 455555555665
Q ss_pred hhcCCC--C--cccccCCCCCHHHHHHHHHhHhccCCCCC
Q 042073 101 CENVTQ--P--LKFLYPSDVSIKEKIDTIARSYGASGVEY 136 (225)
Q Consensus 101 ~e~~~~--~--f~~lY~~~~~i~eKI~~IA~IYGA~~V~~ 136 (225)
+.+.-. . ++.=.+..+.+..=+..| -.|++.|.-
T Consensus 193 l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai--~aG~~~vd~ 230 (295)
T 1ydn_A 193 VLAIAPAHSLAGHYHDTGGRALDNIRVSL--EKGLRVFDA 230 (295)
T ss_dssp HHTTSCGGGEEEEEBCTTSCHHHHHHHHH--HHTCCEEEE
T ss_pred HHHhCCCCeEEEEECCCcchHHHHHHHHH--HhCCCEEEe
Confidence 543211 1 444345556665433332 455555443
No 196
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=55.04 E-value=32 Score=26.69 Aligned_cols=57 Identities=12% Similarity=0.027 Sum_probs=36.7
Q ss_pred cCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++|+|++.|+..-..+.+ ++..+.++...++. +..+ =++=|+|-.+|-+.+++.+.
T Consensus 113 ~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~--SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 113 EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIET--SAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEe--ccccCCCHHHHHHHHHHHHH
Confidence 5899999999975422211 23334566677764 4333 35668888888888777653
No 197
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=54.93 E-value=26 Score=31.10 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHH-------HHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcC
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDSEAELNAV-------RIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 104 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i-------~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~ 104 (225)
+|++=|+..++|||+| |+..|-.|+.+. .++|+++|..-+.+|+.+-+=. -.+..+.|-++.
T Consensus 81 ~l~ekI~l~~~~gV~v------~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~l~--~~~~~~lI~~a~--- 149 (276)
T 1u83_A 81 DLEEKISTLKEHDITF------FFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMT--NKEKAAYIADFS--- 149 (276)
T ss_dssp THHHHHHHHHHTTCEE------EECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCC--HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCeE------eCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHH---
Confidence 4888899999999998 567777777554 5789999999888888776633 344455554443
Q ss_pred CCCcccccC---------CCCCHHHHHHHHHh--HhccCCCCCCH
Q 042073 105 TQPLKFLYP---------SDVSIKEKIDTIAR--SYGASGVEYSE 138 (225)
Q Consensus 105 ~~~f~~lY~---------~~~~i~eKI~~IA~--IYGA~~V~~s~ 138 (225)
+. |+.+.+ ...++.+.|+.+.+ =-||+.|....
T Consensus 150 ~~-f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 150 DE-FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp TT-SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred hh-cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 23 776663 23567888888888 67887776543
No 198
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=54.72 E-value=27 Score=26.43 Aligned_cols=67 Identities=6% Similarity=-0.114 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHh----hcCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHHH
Q 042073 30 CVNLARHIANTK----AYGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQR 99 (225)
Q Consensus 30 ~~NL~~HIeNi~----~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~ 99 (225)
+.++.+.+..+. ..++|+|+++|+..-..+.+.+.+.++.. +.++. + -+.=++-|+|-.+|-+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~--~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 104 ISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-I--QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-E--EECBTTTTBTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE-E--EEccCCCCcCHHHHHHHHHh
Confidence 445555555543 36899999999976543222223333321 22332 2 23335667887777666543
No 199
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=54.58 E-value=11 Score=34.90 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhcC--CeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 31 VNLARHIANTKAYG--VNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 31 ~NL~~HIeNi~~fG--vpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
.++..-++.++.++ .|+||+.|+..-.... ..+.+++++...|.. +.. .=+.-|+|-.+|-+.+.+.+.+
T Consensus 135 ~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~--vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 135 SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHR--ISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEE--CCC-----CTTHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEE--EecCcccCHHHHHHHHHHHHhc
Confidence 45666677777766 9999999998643222 245677778888886 333 3356678999999999998865
No 200
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=53.87 E-value=42 Score=29.82 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=44.3
Q ss_pred HHHHHHHhhcCCeEE-EEec---CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchh
Q 042073 34 ARHIANTKAYGVNVV-VAVN---MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKG 89 (225)
Q Consensus 34 ~~HIeNi~~fGvpvV-VAIN---~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~G 89 (225)
.+.|+.|+..|.++| +.++ .|..|.-+.++.+.++|.+.|+. +.+.-|...|+..
T Consensus 57 ~~~i~~lk~~G~N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~Giy-VIlDlH~~~g~~~ 115 (345)
T 3jug_A 57 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTVREVIELAEQNKMV-AVVEVHDATGRDS 115 (345)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 468999999999987 3444 46678889999999999999996 8887777776544
No 201
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=53.39 E-value=27 Score=32.09 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCCe-EEEEecCCCCCc----HHHHH----HHHHHHHHc-CC
Q 042073 32 NLARHIANTKAYGVN-VVVAVNMFATDS----EAELN----AVRIAAMAA-GA 74 (225)
Q Consensus 32 NL~~HIeNi~~fGvp-vVVAIN~F~~DT----~~Ei~----~i~~~c~~~-g~ 74 (225)
...+|+..++..|+| +||++|+-.-.+ ++.++ .+++++++. |.
T Consensus 168 qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~ 220 (467)
T 1r5b_A 168 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220 (467)
T ss_dssp CHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889888899998 999999986532 33332 356666666 65
No 202
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=52.93 E-value=23 Score=32.13 Aligned_cols=56 Identities=27% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHhh--cCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 37 IANTKA--YGVNVV-VAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 37 IeNi~~--fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
+..+++ .|++|+ +++|.|.-|.+++-+.++..-++.|++ +...+.. |+..|.++++
T Consensus 289 l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glP---v~d~~r~---g~~~l~~~~~ 347 (349)
T 2obn_A 289 VASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLP---CTDVVRF---GADVLLDAVM 347 (349)
T ss_dssp HHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSC---EECHHHH---CSHHHHHHHH
T ss_pred HHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCC---EEEEecC---CHHHHHHHHh
Confidence 344455 677776 678999998888778888888899998 3466666 4555665554
No 203
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=52.80 E-value=30 Score=27.30 Aligned_cols=47 Identities=6% Similarity=-0.079 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhhcCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 29 GCVNLARHIANTKAYGVNVV-VAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 29 G~~NL~~HIeNi~~fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
++..+.+.++.+++.++++. |.+|++..++...-+.+....+..|.+
T Consensus 151 ~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~ 198 (224)
T 1byi_A 151 CINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAP 198 (224)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSC
T ss_pred cHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCC
Confidence 45667777777777888865 778998876544334444444556765
No 204
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=52.51 E-value=55 Score=25.15 Aligned_cols=9 Identities=11% Similarity=-0.152 Sum_probs=4.1
Q ss_pred HHHHHcCCC
Q 042073 67 IAAMAAGAF 75 (225)
Q Consensus 67 ~~c~~~g~~ 75 (225)
+++...+.+
T Consensus 131 ~~~~~~~~~ 139 (210)
T 1pui_A 131 EWAVDSNIA 139 (210)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 344444554
No 205
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=52.46 E-value=27 Score=29.88 Aligned_cols=70 Identities=21% Similarity=0.148 Sum_probs=47.6
Q ss_pred ccHHHHHHh-HHHHHHHHHHHhhc--CCeEEEEecC-CCC--CcHHHHHHHHHHHHHcCCCeEEEccccc-cCchhh
Q 042073 21 ENVALVEAG-CVNLARHIANTKAY--GVNVVVAVNM-FAT--DSEAELNAVRIAAMAAGAFDAVVCSHHA-HGGKGA 90 (225)
Q Consensus 21 eN~~al~~G-~~NL~~HIeNi~~f--GvpvVVAIN~-F~~--DT~~Ei~~i~~~c~~~g~~~~avs~~wa-~GG~Ga 90 (225)
-|+.+|+.| ..-+.+-|.-+++- |.|+=|.|-. +-. -|++|+....+.|.++|+..+-.|+.|. .||.--
T Consensus 101 inig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~~~~gAt~ 177 (231)
T 3ndo_A 101 IDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPSGGASV 177 (231)
T ss_dssp CCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCCTTCSCCH
T ss_pred eehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCCCCCCCCH
Confidence 367777665 33355566666652 6777666654 111 2799999999999999998566677897 676553
No 206
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=51.79 E-value=38 Score=25.82 Aligned_cols=71 Identities=8% Similarity=-0.103 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHHH
Q 042073 29 GCVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQR 99 (225)
Q Consensus 29 G~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~ 99 (225)
.+.++...+..+.+ .++|+++++|+..-..+.+.+.+.+... ..++ .+-+.=++-|+|-.+|-+.+++
T Consensus 105 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 105 KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI---CCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE---EEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCe---eEEEEECCCCCCHHHHHHHHHH
Confidence 35555555555533 6899999999976432211122222211 1222 2224446778898888888877
Q ss_pred Hhh
Q 042073 100 ACE 102 (225)
Q Consensus 100 ~~e 102 (225)
.+.
T Consensus 182 ~~~ 184 (188)
T 1zd9_A 182 HSK 184 (188)
T ss_dssp TCC
T ss_pred HHH
Confidence 664
No 207
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=51.44 E-value=22 Score=32.23 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCCe-EEEEecCCCCCc----HHH----HHHHHHHHHHcCC
Q 042073 30 CVNLARHIANTKAYGVN-VVVAVNMFATDS----EAE----LNAVRIAAMAAGA 74 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvp-vVVAIN~F~~DT----~~E----i~~i~~~c~~~g~ 74 (225)
.....+|+..++.+|+| +||++|+....+ ++. .+.+++++++.|.
T Consensus 129 ~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (435)
T 1jny_A 129 EGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF 182 (435)
T ss_dssp TCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 34778999999999985 899999976433 333 3456777777773
No 208
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=51.34 E-value=17 Score=31.59 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEE
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAV 78 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~a 78 (225)
+..+.+-|+.+++.|+++.+-+.-.+..++++++.+.+++++.|+..+.
T Consensus 222 ~~~~~~~i~~l~~~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~~~~i~ 270 (342)
T 2yx0_A 222 WERILRFLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVE 270 (342)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCEEE
Confidence 6777777788888899988887777766667799999999999986333
No 209
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=51.27 E-value=31 Score=29.39 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=77.2
Q ss_pred ccccccccHHHHHHhHHHHHHHHHHHhhcCC-----eEEE----EecCCCCC----------cHHHHHHHHHHHHHcCCC
Q 042073 15 DHAYLNENVALVEAGCVNLARHIANTKAYGV-----NVVV----AVNMFATD----------SEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 15 ~~~l~~eN~~al~~G~~NL~~HIeNi~~fGv-----pvVV----AIN~F~~D----------T~~Ei~~i~~~c~~~g~~ 75 (225)
|+=++.+|.+.+ ..+|++-+++||+ .+|- .+|-=.+. +.+++......++-.|..
T Consensus 82 pslln~~~~~~i------~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~ 155 (228)
T 3vzx_A 82 PSVLNSKNADWI------VGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP 155 (228)
T ss_dssp EEETTBSSGGGT------THHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS
T ss_pred eeecCCCCcchh------hhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCC
Confidence 344455555443 3567888899996 6665 57763322 236777777777777886
Q ss_pred eEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH
Q 042073 76 DAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTR 149 (225)
Q Consensus 76 ~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~IYGA~~V~~s~~A~~~l~~~e~ 149 (225)
++-.+. .|-.|..++-+++.+.+. .....|--.-+=.|.+++++ -||++|..-..+.+..+.+++
T Consensus 156 -~VYld~--sG~~~~~~~i~~i~~~~~----~~Pv~vGGGI~t~e~a~~~~--~gAD~VVVGSa~v~~p~~~~~ 220 (228)
T 3vzx_A 156 -IFYLEY--SGVLGDIEAVKKTKAVLE----TSTLFYGGGIKDAETAKQYA--EHADVIVVGNAVYEDFDRALK 220 (228)
T ss_dssp -EEEEEC--TTSCCCHHHHHHHHHHCS----SSEEEEESSCCSHHHHHHHH--TTCSEEEECTHHHHCHHHHHH
T ss_pred -EEEecC--CCCcCCHHHHHHHHHhcC----CCCEEEeCCCCCHHHHHHHH--hCCCEEEEChHHhcCHHHHHH
Confidence 665555 566666777777766541 24456666666567777665 499999998877766655544
No 210
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=51.09 E-value=1.5e+02 Score=27.33 Aligned_cols=39 Identities=5% Similarity=0.056 Sum_probs=30.8
Q ss_pred CCe-EEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 44 GVN-VVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 44 Gvp-vVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
.+| |.|=|- +.-|++|+..+.+.|++.|+..+++++.+.
T Consensus 268 ~~P~V~VKi~--pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~ 307 (415)
T 3i65_A 268 KKPLVFVKLA--PDLNQEQKKEIADVLLETNIDGMIISNTTT 307 (415)
T ss_dssp SCCEEEEEEC--SCCCHHHHHHHHHHHHHHTCSEEEECCCBS
T ss_pred CCCeEEEEec--CCCCHHHHHHHHHHHHHcCCcEEEEeCCCc
Confidence 688 777665 445678899999999999998777787764
No 211
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=50.91 E-value=13 Score=28.44 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=43.4
Q ss_pred ccccHHHHHHhHHHHHHHHHHHhh-c-CCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 19 LNENVALVEAGCVNLARHIANTKA-Y-GVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 19 ~~eN~~al~~G~~NL~~HIeNi~~-f-GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
.+.+++.+.+ .|.+.++..-. | |-|||+=+-... ++.++..|.+.|++.|...+.++
T Consensus 23 ~~~d~~~l~~---~L~~ki~~aP~FF~~aPVVlDl~~l~--~~~dl~~L~~~l~~~gl~~vGV~ 81 (120)
T 3ghf_A 23 HEAEPEVIRQ---ALEDKIAQAPAFLKHAPVVINVSGLE--SPVNWPELHKIVTSTGLRIIGVS 81 (120)
T ss_dssp ESCCHHHHHH---HHHHHHHHSHHHHTTCEEEEEEEECC--SSCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCHHHHHH---HHHHHHHhChHhhCCCcEEEEccccC--ChHHHHHHHHHHHHcCCEEEEEe
Confidence 3467777765 55677888877 3 899999888886 34679999999999999755544
No 212
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=50.06 E-value=31 Score=30.56 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=34.8
Q ss_pred ccHHHHHHhHHHHHHHHHHHhhcCCe-----EEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 21 ENVALVEAGCVNLARHIANTKAYGVN-----VVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~fGvp-----vVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
-++.+..+|+.+|.+-++.++++|.+ +|..+|++.. +...-+...+..+..|..
T Consensus 282 ~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~-~~~~~~~~~~~~~~~g~~ 340 (403)
T 3ez9_A 282 VDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG-KRDHETSHSLAREVYASN 340 (403)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----CHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-chhHHHHHHHHHHHhhHh
Confidence 45566789999999999999988766 4668899863 322222333334457775
No 213
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=49.40 E-value=17 Score=33.38 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCe-EEEEecCCCCC--cHHHHH----HHHHHHHHcCC
Q 042073 32 NLARHIANTKAYGVN-VVVAVNMFATD--SEAELN----AVRIAAMAAGA 74 (225)
Q Consensus 32 NL~~HIeNi~~fGvp-vVVAIN~F~~D--T~~Ei~----~i~~~c~~~g~ 74 (225)
...+|+..++..|+| +||++|+-..- +++.++ .+++++++.|.
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 677899888899997 99999997542 344433 35556666663
No 214
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=48.75 E-value=19 Score=30.17 Aligned_cols=67 Identities=6% Similarity=-0.070 Sum_probs=40.5
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHH--HHHHHHHHHHcCCCeEEEccccccC---chhhHHHHHHHHHHhhc
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAE--LNAVRIAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACEN 103 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~E--i~~i~~~c~~~g~~~~avs~~wa~G---G~Ga~~LA~~Vv~~~e~ 103 (225)
++.++..+.|+++++|+...-.+.+ .+.+.+.....+...+.++..-+.+ |.|-.+|-+.+.+.+..
T Consensus 191 ~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 191 AKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 3445668999999999976533322 3333321112223324455555555 88888998888888764
No 215
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=48.51 E-value=24 Score=27.28 Aligned_cols=69 Identities=10% Similarity=-0.087 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHh----hcCCeEEEEecCCCCCcHHHHHHHHHHHHHcC---------CCeEEEccccccCchhhHHHHHH
Q 042073 30 CVNLARHIANTK----AYGVNVVVAVNMFATDSEAELNAVRIAAMAAG---------AFDAVVCSHHAHGGKGAVDLGIA 96 (225)
Q Consensus 30 ~~NL~~HIeNi~----~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g---------~~~~avs~~wa~GG~Ga~~LA~~ 96 (225)
+.++.+.++.+. ..+.|++++.|+-.-......+.+++++.... ...+.+-+.=++=|+|-.+|-+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 106 FDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHH
Confidence 445555555543 36899999999965432111223344443211 01122223334556776666655
Q ss_pred HH
Q 042073 97 VQ 98 (225)
Q Consensus 97 Vv 98 (225)
++
T Consensus 186 l~ 187 (190)
T 1m2o_B 186 LS 187 (190)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 216
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=48.49 E-value=60 Score=27.61 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=34.1
Q ss_pred HHhhcCCeEEEEecCCCC-------CcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 39 NTKAYGVNVVVAVNMFAT-------DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 39 Ni~~fGvpvVVAIN~F~~-------DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
-.+++|+|+| +|-++. -|++++....+.|.+.|+. ++-.. |. |..+.-+.+++.+
T Consensus 133 ~~~~~~~~vI--i~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD-~vkt~-~~----~~~e~~~~~~~~~ 194 (263)
T 1w8s_A 133 DAVKFDLPLV--VESFPRGGKVVNETAPEIVAYAARIALELGAD-AMKIK-YT----GDPKTFSWAVKVA 194 (263)
T ss_dssp HHHHHTCCEE--EEECCCSTTCCCTTCHHHHHHHHHHHHHHTCS-EEEEE-CC----SSHHHHHHHHHHT
T ss_pred HHHHcCCeEE--EEeeCCCCccccCCCHHHHHHHHHHHHHcCCC-EEEEc-CC----CCHHHHHHHHHhC
Confidence 3456899975 476651 1677888777888889996 53333 53 2445555555554
No 217
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=48.24 E-value=37 Score=36.06 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCe-EEEEecCCCCCcHHH-H----HHHHHHHHHcC-----CCeEEEcccccc--C----chhhHHHH
Q 042073 32 NLARHIANTKAYGVN-VVVAVNMFATDSEAE-L----NAVRIAAMAAG-----AFDAVVCSHHAH--G----GKGAVDLG 94 (225)
Q Consensus 32 NL~~HIeNi~~fGvp-vVVAIN~F~~DT~~E-i----~~i~~~c~~~g-----~~~~avs~~wa~--G----G~Ga~~LA 94 (225)
....|+..++..|+| +||++|+-....+++ + +.+++++++.| ++ +..+..+.. | ++|-.+|-
T Consensus 399 QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp-~IpvSAktG~ng~~~w~eGI~eLl 477 (1289)
T 3avx_A 399 QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTP-IVRGSALKALEGDAEWEAKILELA 477 (1289)
T ss_dssp THHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCC-EEECCSTTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccccee-EEEEEeccCCCCCccccccchhhH
Confidence 456788888889999 799999987543222 2 34566777777 34 555555442 1 14556676
Q ss_pred HHHHHHh
Q 042073 95 IAVQRAC 101 (225)
Q Consensus 95 ~~Vv~~~ 101 (225)
+.+.+.+
T Consensus 478 eaL~~~I 484 (1289)
T 3avx_A 478 GFLDSYI 484 (1289)
T ss_dssp HHHHHTS
T ss_pred hHHhhhc
Confidence 6666644
No 218
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=47.73 E-value=59 Score=28.38 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=45.6
Q ss_pred cHHHHHHhH-HHHHHHHHHHhh--cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhh
Q 042073 22 NVALVEAGC-VNLARHIANTKA--YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGA 90 (225)
Q Consensus 22 N~~al~~G~-~NL~~HIeNi~~--fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga 90 (225)
|+.+++.|- .-+..-|..++. -|.|+=|.|..= -=|++|+....+.|.++|+..+-.|+.|..||.--
T Consensus 133 Nig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~-~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT~ 203 (260)
T 3r12_A 133 NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETC-YLDTEEKIAACVISKLAGAHFVKTSTGFGTGGATA 203 (260)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGG-GCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCH
T ss_pred ehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCC-CCCHHHHHHHHHHHHHhCcCEEEcCCCCCCCCCCH
Confidence 666666542 234455555554 267777766641 12679999999999999998666778898777543
No 219
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=47.21 E-value=51 Score=32.69 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCC--CC------cHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFA--TD------SEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~--~D------T~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
+.|++++++-+++.|..|.+++-.+. .| +.+.+-.+.+.+.+.|+..+.+++-
T Consensus 223 l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT 283 (718)
T 3bg3_A 223 LPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDM 283 (718)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECT
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 57999999999999999999898772 23 4566666666667889986777765
No 220
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=46.88 E-value=9.5 Score=32.35 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred HHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCC
Q 042073 36 HIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPS 114 (225)
Q Consensus 36 HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~ 114 (225)
=++++.. ||+++.+ |.-++++|++...+.+++.|+. +++... -..++|++ ..-+.-++|.
T Consensus 120 ~~~~i~~ll~~~i~~----~~~~~~ee~~~~i~~l~~~G~~-vVVG~~------~~~~~A~~-------~Gl~~vlI~s- 180 (225)
T 2pju_A 120 ALVAFQKTFNLRLDQ----RSYITEEDARGQINELKANGTE-AVVGAG------LITDLAEE-------AGMTGIFIYS- 180 (225)
T ss_dssp HHHHHHHHHTCCEEE----EEESSHHHHHHHHHHHHHTTCC-EEEESH------HHHHHHHH-------TTSEEEESSC-
T ss_pred HHHHHHHHhCCceEE----EEeCCHHHHHHHHHHHHHCCCC-EEECCH------HHHHHHHH-------cCCcEEEECC-
Confidence 3445544 6776555 6678899999999999999997 877543 33444433 2233567884
Q ss_pred CCCHHHHHHHHHhHhcc
Q 042073 115 DVSIKEKIDTIARSYGA 131 (225)
Q Consensus 115 ~~~i~eKI~~IA~IYGA 131 (225)
..||++=++.=.+++.+
T Consensus 181 ~eSI~~Ai~eA~~l~~~ 197 (225)
T 2pju_A 181 AATVRQAFSDALDMTRM 197 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67887777654334433
No 221
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=46.82 E-value=1.2e+02 Score=24.88 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHhhcCC-eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhh
Q 042073 28 AGCVNLARHIANTKAYGV-NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGA 90 (225)
Q Consensus 28 ~G~~NL~~HIeNi~~fGv-pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga 90 (225)
.|-+=|.+-++++++.|+ .+||+.+ . +.|.+++.+.|+. +....--..+|.|.
T Consensus 25 ~GkPli~~~l~~l~~~~~~~ivVv~~-----~----~~i~~~~~~~g~~-v~~~~~~~~~Gt~~ 78 (252)
T 3oam_A 25 GGKPMIQWVYEQAMQAGADRVIIATD-----D----ERVEQAVQAFGGV-VCMTSPNHQSGTER 78 (252)
T ss_dssp TTEEHHHHHHHHHHHTTCSEEEEEES-----C----HHHHHHHHHTTCE-EEECCTTCCSHHHH
T ss_pred CCEEHHHHHHHHHHhCCCCeEEEECC-----H----HHHHHHHHHcCCE-EEEcCCCCCCcHHH
Confidence 355667888899988876 4666653 2 3456777888986 65543323345444
No 222
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=46.49 E-value=33 Score=28.46 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=43.7
Q ss_pred HHHHH-HHHHHHhhc--CCeEEEEecCCCCCc-HHH-------------HHHHHHHHHHcCCCeEEEccccccCchhhHH
Q 042073 30 CVNLA-RHIANTKAY--GVNVVVAVNMFATDS-EAE-------------LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVD 92 (225)
Q Consensus 30 ~~NL~-~HIeNi~~f--GvpvVVAIN~F~~DT-~~E-------------i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~ 92 (225)
+.++. ..++.++.+ ++|+++++|+..-.. ... .+...++++..|...+..+. ++-|+|-.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~ 319 (332)
T 2wkq_A 242 FHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKT 319 (332)
T ss_dssp HHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHH
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec--CCCCcCHHH
Confidence 44554 344555554 899999999974311 111 23456778888873243333 466788888
Q ss_pred HHHHHHHHhh
Q 042073 93 LGIAVQRACE 102 (225)
Q Consensus 93 LA~~Vv~~~e 102 (225)
|-+.+++.+-
T Consensus 320 l~~~l~~~~~ 329 (332)
T 2wkq_A 320 VFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877653
No 223
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=46.06 E-value=37 Score=30.67 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCeEE-EEec--C--------CCCC-cHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 34 ARHIANTKAYGVNVV-VAVN--M--------FATD-SEAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 34 ~~HIeNi~~fGvpvV-VAIN--~--------F~~D-T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
++.++.|+..|+.+| +.|. + |..+ .-+-++.+.++|++.|+. +.+.-|...|+
T Consensus 76 e~d~~~i~~~G~N~VRipi~~~~~~~~~~~py~~~~~l~~ld~vv~~a~~~Gi~-VilDlH~~pG~ 140 (408)
T 1h4p_A 76 EQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLK-VWVDLHGAAGS 140 (408)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCE-EEEEEEECTTC
T ss_pred HHHHHHHHHCCCCEEEccCCHHHcccCCCCCCccccHHHHHHHHHHHHHHCCCE-EEEECCCCCCc
Confidence 567888999999988 5553 2 3333 567788999999999996 88888876554
No 224
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=45.86 E-value=23 Score=34.25 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=41.4
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 34 ARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
..|+..+..+++|+|+++|+-.-.....-+.+.++....|.....+-..=+.-|.|-.+|-+.+++.+.
T Consensus 115 ~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 115 VANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 345555667899999999997653221112344555556663100112334567888888888887764
No 225
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=45.84 E-value=1.3e+02 Score=25.10 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=71.4
Q ss_pred HHHHHHhhcCCeEEEEe----------------cCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 35 RHIANTKAYGVNVVVAV----------------NMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAI----------------N~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
...+.++++++|+|..- -++..|...+...+.++..+.|.+.+++- +. ...-+.+.++.+.
T Consensus 104 ~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i--~~-~~~~~~~~~~~~~ 180 (386)
T 3sg0_A 104 PLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYI--GF-SDAYGEGYYKVLA 180 (386)
T ss_dssp HHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEE--EE-SSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEE--ec-CchHHHHHHHHHH
Confidence 34556678999998742 23456778888899999999999877765 22 3344567777777
Q ss_pred HHhhcCCCC--cccccCCC-CCHHHHHHHHH----h-HhccCCCCCCHHHHHHHHHHHHCCCCCCCe
Q 042073 99 RACENVTQP--LKFLYPSD-VSIKEKIDTIA----R-SYGASGVEYSEEAEKQIKMYTRQGFSGLPF 157 (225)
Q Consensus 99 ~~~e~~~~~--f~~lY~~~-~~i~eKI~~IA----~-IYGA~~V~~s~~A~~~l~~~e~~G~~~lPV 157 (225)
+.+++..-+ ....|+.. .+...-++++. . |+-+.. ...+..-++++.++|+. .|+
T Consensus 181 ~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~---~~~a~~~~~~~~~~g~~-~~~ 243 (386)
T 3sg0_A 181 AAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASA---GTPAVLPQKALRERGFK-GAI 243 (386)
T ss_dssp HHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECC---SGGGHHHHHHHHHTTCC-SEE
T ss_pred HHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecC---cchHHHHHHHHHHcCCC-CcE
Confidence 776642111 12234332 34444444443 2 333222 24577778888999996 565
No 226
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=45.70 E-value=72 Score=27.33 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=38.0
Q ss_pred HHHhhc--CCeEEEEecCCCCCcHHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 38 ANTKAY--GVNVVVAVNMFATDSEAELNAVRIAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 38 eNi~~f--GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~-g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++++ ++|+++++|+-...+.++ + +.+.+++. +.. .+-..=+.=|+|-.+|-+.+.+.+.
T Consensus 109 ~~l~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~~~~~~--~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 109 RALKPLVGKVPILLVGNKLDAAKYPE-E-AMKAYHELLPEA--EPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HHHGGGTTTSCEEEEEECGGGCSSHH-H-HHHHHHHTSTTS--EEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhhcCCCCEEEEEECcccCCchH-H-HHHHHHHhcCcC--cEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 556777 999999999976554444 0 23333333 332 2223446678888888888777654
No 227
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=45.47 E-value=14 Score=29.13 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=40.3
Q ss_pred hcCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 42 AYGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 42 ~fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.++.|++|++|+..-... .+++.+.+++++.+.. +.+-..-+.=|+|-.+|-+.+.+.+.
T Consensus 152 ~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 152 IFRVADLIVINKVALAEAVGADVEKMKADAKLINPR-AKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTT-SEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCC-CeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 357999999999854322 2466677777765532 22334556678898888888877664
No 228
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=45.18 E-value=16 Score=32.62 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCCeEEEEecCC------CCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHH-HHHhhcC
Q 042073 32 NLARHIANTKAYGVNVVVAVNMF------ATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV-QRACENV 104 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F------~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~V-v~~~e~~ 104 (225)
.+++=++.++++|..|++.=+.+ +...++-.+-+.++...-.++ +++| +.||.|+..|-..+ -+.+.++
T Consensus 32 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~~lD~~~i~~~ 107 (336)
T 3sr3_A 32 RFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVS-CIMS---TIGGMNSNSLLPYIDYDAFQNN 107 (336)
T ss_dssp HHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEE-EEEE---SCCCSCGGGGGGGSCHHHHHHS
T ss_pred HHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCC-EEEE---ccccccHHHHhhhcChhHHhhC
Confidence 44555666677899999875533 333344455666666666775 7776 57999999987775 3455443
Q ss_pred CCCcccccCCCCCHHHHHHH---HHhHhcc
Q 042073 105 TQPLKFLYPSDVSIKEKIDT---IARSYGA 131 (225)
Q Consensus 105 ~~~f~~lY~~~~~i~eKI~~---IA~IYGA 131 (225)
|. .=.=|.+--.|--=|-+ ++++||-
T Consensus 108 PK-~~~GySDiTaL~~al~~~~G~~t~hGp 136 (336)
T 3sr3_A 108 PK-IMIGYSDATALLLGIYAKTGIPTFYGP 136 (336)
T ss_dssp CC-EEEECGGGHHHHHHHHHHHCCCEEECC
T ss_pred Ce-EEEEechHHHHHHHHHHhcCceEEECC
Confidence 32 22335554445544443 2236664
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=45.12 E-value=28 Score=30.63 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCcHH----HHHHHHHHHHHcCCC
Q 042073 33 LARHIANTKAYGVNVVVAVNMFATDSEA----ELNAVRIAAMAAGAF 75 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~~DT~~----Ei~~i~~~c~~~g~~ 75 (225)
|.|-+-.+...|+|+|+++|+-.--+++ +++.+.++-++.|..
T Consensus 106 i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 106 LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 5666666678999999999997643333 366666666678886
No 230
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=45.05 E-value=55 Score=30.77 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=41.9
Q ss_pred CccccccccHHHHHHhHHH---------------HHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeE
Q 042073 14 LDHAYLNENVALVEAGCVN---------------LARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDA 77 (225)
Q Consensus 14 l~~~l~~eN~~al~~G~~N---------------L~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~ 77 (225)
+|=.+...|.++++++++- ++.-.+-+++||+|+|+--| .-+.+..+.+.+.++|+.+.
T Consensus 156 vPL~IDS~dpevleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pVi~~~~-----dl~~lkelv~~a~~~GI~~I 229 (446)
T 4djd_C 156 LNLVLMADDPDVLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPLAVYGN-----GLEELAELVDKIVALGHKQL 229 (446)
T ss_dssp SEEEEECSCHHHHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCEEEECS-----SHHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEecCCHHHHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcEEEEec-----cHHHHHHHHHHHHHCCCCcE
Confidence 4556677888888888753 34444555779999988755 46677778888888898533
No 231
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=45.01 E-value=1e+02 Score=25.50 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=4.9
Q ss_pred HHHHHHHHHhh
Q 042073 92 DLGIAVQRACE 102 (225)
Q Consensus 92 ~LA~~Vv~~~e 102 (225)
+++++|+++|.
T Consensus 132 ~~~~~v~~~~~ 142 (273)
T 2qjg_A 132 RDLGMIAETCE 142 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 232
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=44.56 E-value=64 Score=28.41 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=64.4
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-cCC------CCCcHHH-------HHHHHHHHHHcC--CCeEEEc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-NMF------ATDSEAE-------LNAVRIAAMAAG--AFDAVVC 80 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~F------~~DT~~E-------i~~i~~~c~~~g--~~~~avs 80 (225)
.+..++-+.-++.+..+++.|+..+.+|.+.||.- ... ..|.++. ++.+.+.+++.| +. +++-
T Consensus 102 ~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~~~~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~-l~lE 180 (386)
T 1muw_A 102 GFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIR-FAIE 180 (386)
T ss_dssp STTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEe
Confidence 45557777788999999999999999999998853 221 2344443 345556677888 86 8787
Q ss_pred ccccc--Cc--hhhHHHHHHHHHHhhcCCCCcccccCC------CCCHHHHHHHHH
Q 042073 81 SHHAH--GG--KGAVDLGIAVQRACENVTQPLKFLYPS------DVSIKEKIDTIA 126 (225)
Q Consensus 81 ~~wa~--GG--~Ga~~LA~~Vv~~~e~~~~~f~~lY~~------~~~i~eKI~~IA 126 (225)
++..+ +. -...+-+..+++.+.. ++.+..++|. ..++.+-|++..
T Consensus 181 ~~~~e~~~~~~~~t~~~~~~li~~v~~-pn~vgl~lD~~H~~~~g~d~~~~l~~~~ 235 (386)
T 1muw_A 181 PKPNEPRGDILLPTVGHALAFIERLER-PELYGVNPEVGHEQMAGLNFPHGIAQAL 235 (386)
T ss_dssp CCSSSSSSEESSCSHHHHHHHHTTSSS-GGGEEECCBHHHHHTTTCCHHHHHHHHH
T ss_pred eCCCCCcccccCCCHHHHHHHHHHhCC-ccceEEEeeccchhhcCCCHHHHHHHhc
Confidence 76321 11 0122333344444421 2126666653 345666666654
No 233
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=44.35 E-value=25 Score=26.69 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=16.4
Q ss_pred cCCeEEEEecCCCCCcHHHHHHHHH
Q 042073 43 YGVNVVVAVNMFATDSEAELNAVRI 67 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~i~~ 67 (225)
-++|++|++|+..-..+.+++.+.+
T Consensus 155 ~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 155 NGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp TCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred cCCCEEEEEEchHhcCCCCHHHHHH
Confidence 4899999999976544333443433
No 234
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=43.95 E-value=4.8 Score=33.10 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 042073 43 YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKI 122 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI 122 (225)
||+++.+ |.-++++|++.+.+.+++.|+. +++... -..++|++ ..-+.-++|....|+++=+
T Consensus 116 l~~~i~~----~~~~~~~e~~~~i~~l~~~G~~-vvVG~~------~~~~~A~~-------~Gl~~vli~sg~eSI~~Ai 177 (196)
T 2q5c_A 116 LGVKIKE----FLFSSEDEITTLISKVKTENIK-IVVSGK------TVTDEAIK-------QGLYGETINSGEESLRRAI 177 (196)
T ss_dssp HTCEEEE----EEECSGGGHHHHHHHHHHTTCC-EEEECH------HHHHHHHH-------TTCEEEECCCCHHHHHHHH
T ss_pred hCCceEE----EEeCCHHHHHHHHHHHHHCCCe-EEECCH------HHHHHHHH-------cCCcEEEEecCHHHHHHHH
Confidence 5555443 5557888999999999999997 877543 33444433 2233568888888888877
Q ss_pred HHHHh
Q 042073 123 DTIAR 127 (225)
Q Consensus 123 ~~IA~ 127 (225)
+.=.+
T Consensus 178 ~eA~~ 182 (196)
T 2q5c_A 178 EEALN 182 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65333
No 235
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=43.70 E-value=28 Score=33.54 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC--eEEEccccccCchhhHHHHHHHHHHhh
Q 042073 34 ARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~--~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
..|+.....+++|+|+++|+-.-.....-+.+.++....|.. ++.. .=++=|.|-.+|-+.+++.+.
T Consensus 113 ~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~--vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 113 LANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR--CSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEE--ECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEE--eecccCCCchhHHHHHhhcCC
Confidence 345555667899999999997643311112334455555652 1222 224567888888888888764
No 236
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=43.65 E-value=64 Score=26.07 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEcccc
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHH 83 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~w 83 (225)
..+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-++.
T Consensus 91 ~~~~~~i~~A~~lGa~~v~~~---~~--~~~~~~l~~~a~~~gv~-l~~En~~ 137 (262)
T 3p6l_A 91 SDWEKMFKFAKAMDLEFITCE---PA--LSDWDLVEKLSKQYNIK-ISVHNHP 137 (262)
T ss_dssp THHHHHHHHHHHTTCSEEEEC---CC--GGGHHHHHHHHHHHTCE-EEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEec---CC--HHHHHHHHHHHHHhCCE-EEEEeCC
Confidence 467888888888888888763 32 35677788888888885 7777774
No 237
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=42.76 E-value=36 Score=29.22 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 35 RHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
.|++-..++|+|+||.-=-| |+++++.++++|++ +. +..+..|+-|=.=-..|++...
T Consensus 68 ~~~~~~~~~g~~~ViGTTG~---~~~~~~~l~~~a~~--~~-vv~apNfSlGvnll~~l~~~aA 125 (228)
T 1vm6_A 68 KTVDLCKKYRAGLVLGTTAL---KEEHLQMLRELSKE--VP-VVQAYNFSIGINVLKRFLSELV 125 (228)
T ss_dssp HHHHHHHHHTCEEEECCCSC---CHHHHHHHHHHTTT--SE-EEECSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCC---CHHHHHHHHHHHhh--CC-EEEeccccHHHHHHHHHHHHHH
Confidence 33444445566666543333 23444445554433 32 5555555554443333443333
No 238
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=42.61 E-value=24 Score=33.29 Aligned_cols=42 Identities=5% Similarity=0.070 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 34 ARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
.++.+.++.+++|+++++|+-.-......+.+.++.+..|..
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCC
Confidence 456667788999999999997665444445566666777774
No 239
>3e5a_B Targeting protein for XKLP2; aurora A, serine/threonine-protein kinase, cofactor, TPX2, V inhibitor, phosphorylation, ATP-binding, cell cycle; HET: TPO VX6; 2.30A {Homo sapiens} PDB: 3ha6_B* 1ol5_B*
Probab=42.53 E-value=9 Score=24.97 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=8.5
Q ss_pred EeecCCCcCCCCCCCc
Q 042073 159 MAKTQHSFSHNAPTGF 174 (225)
Q Consensus 159 mAKTqyS~Sdd~P~~f 174 (225)
|++-|-|.|=|+|++|
T Consensus 2 Msqv~~sYSfDaPt~f 17 (44)
T 3e5a_B 2 MSQVKSSYSYDAPSDF 17 (44)
T ss_dssp -----CCCCCSSCCBC
T ss_pred ccccccceeccCCccc
Confidence 5555556666899998
No 240
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=42.35 E-value=67 Score=28.86 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCe-EEEEecCCCCCc--HHHH----HHHHHHHHHcC
Q 042073 31 VNLARHIANTKAYGVN-VVVAVNMFATDS--EAEL----NAVRIAAMAAG 73 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvp-vVVAIN~F~~DT--~~Ei----~~i~~~c~~~g 73 (225)
+...+|+..++..|+| +||++|+-.--. ++.+ +.+++++++.|
T Consensus 143 ~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 143 TQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhC
Confidence 4567888888889985 899999976532 3333 44566777777
No 241
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=42.04 E-value=95 Score=26.60 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHhHHHHHHHHHHHhhcCCeEEEEec-CCC-----CCcHHHHHHHHHHHHHcCCCeEEEcccc
Q 042073 26 VEAGCVNLARHIANTKAYGVNVVVAVN-MFA-----TDSEAELNAVRIAAMAAGAFDAVVCSHH 83 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~~fGvpvVVAIN-~F~-----~DT~~Ei~~i~~~c~~~g~~~~avs~~w 83 (225)
.+.-++...+.|+.+++.|++|.+.+= .|. .-+.+++..+.+.+.+.|+..+.+++--
T Consensus 116 ~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~ 179 (298)
T 2cw6_A 116 IEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTI 179 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 344567788899999999999987665 242 1246777777778889999877787653
No 242
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=41.91 E-value=1.2e+02 Score=23.44 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=47.2
Q ss_pred cHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcH------------------H----HHHHHHHHHHHcCCCeEEE
Q 042073 22 NVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSE------------------A----ELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 22 N~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~------------------~----Ei~~i~~~c~~~g~~~~av 79 (225)
+.+..+ .||.+-|+.+++.|.++|+ +.-++.... + =-+.+++.|++.|+. ++=
T Consensus 94 ~~~~~~---~~l~~~i~~~~~~~~~vil-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~-~vD 168 (240)
T 3mil_A 94 PLPEFI---DNIRQMVSLMKSYHIRPII-IGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVP-FVA 168 (240)
T ss_dssp CHHHHH---HHHHHHHHHHHHTTCEEEE-ECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCC-EEC
T ss_pred CHHHHH---HHHHHHHHHHHHcCCeEEE-EcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHhCCe-EEe
Confidence 444444 4677777788877876555 444443322 2 224567889999997 542
Q ss_pred c-------------cccccC----chhhHHHHHHHHHHhhc
Q 042073 80 C-------------SHHAHG----GKGAVDLGIAVQRACEN 103 (225)
Q Consensus 80 s-------------~~wa~G----G~Ga~~LA~~Vv~~~e~ 103 (225)
. ..+.+| -+|...+|+.+.+.+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~~ 209 (240)
T 3mil_A 169 LNKAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDELLKVIET 209 (240)
T ss_dssp HHHHHHHHHGGGGGGGBSSSSSBCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCccHhhccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 1 112344 67888888888887764
No 243
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=41.86 E-value=70 Score=27.29 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcC-CCeEEEcc
Q 042073 32 NLARHIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAG-AFDAVVCS 81 (225)
Q Consensus 32 NL~~HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g-~~~~avs~ 81 (225)
|+..-|+.+++ .++|++|=+.-.. +.+|+..+.+.+.+.| +.-+.+++
T Consensus 147 ~~~~ii~~vr~~~~~Pv~vK~~~~~--~~~~~~~~a~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 147 AMRTYLQQVSLAYGLPFGVKMPPYF--DIAHFDTAAAVLNEFPLVKFVTCVN 196 (314)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCCC--CHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC--CHHHHHHHHHHHHhcCCceEEEEeC
Confidence 55666777766 5899999776442 5778888888899999 86444444
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=41.85 E-value=45 Score=30.02 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCcHHH---HHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 042073 33 LARHIANTKAYGVNVVVAVNMFATDSEAE---LNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~~DT~~E---i~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
|.|.+-.....|+|+|+++|+-.--++++ ++.+.+.-.+.|+. +...+ +.-|.|-.+|-.
T Consensus 149 i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~-v~~~S--a~~~~gl~~L~~ 211 (358)
T 2rcn_A 149 IDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYR-VLMVS--SHTQDGLKPLEE 211 (358)
T ss_dssp HHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCC-EEECB--TTTTBTHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCc-EEEEe--cCCCcCHHHHHH
Confidence 55666666778999999999976555555 33444444578997 44433 344566555543
No 245
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=41.85 E-value=22 Score=31.59 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=59.0
Q ss_pred cHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCC-----CcH-HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 042073 22 NVALVEAGCVNLARHIANTKAYGVNVVVAVNMFAT-----DSE-AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 22 N~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~-----DT~-~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
+.+.+++|. +.++++|..|++.=|.+.. -|+ +-.+-+.++...-.++ +++| +.||.|+..|-.
T Consensus 28 ~~~~~~~~~-------~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~ 96 (331)
T 4e5s_A 28 STENRRLAV-------KRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVK-AILT---TLGGYNSNGLLK 96 (331)
T ss_dssp CHHHHHHHH-------HHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEE-EEEE---SCCCSCGGGGGG
T ss_pred CHHHHHHHH-------HHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCC-EEEE---ccccccHHHHHh
Confidence 345555555 4555799999997665433 344 4455566666666774 7766 689999999887
Q ss_pred HH-HHHhhcCCCCcccccCCCCCHHHHHHH---HHhHhccC
Q 042073 96 AV-QRACENVTQPLKFLYPSDVSIKEKIDT---IARSYGAS 132 (225)
Q Consensus 96 ~V-v~~~e~~~~~f~~lY~~~~~i~eKI~~---IA~IYGA~ 132 (225)
.+ -+.+.++|. .=.=|.+--.|--=|-+ ++++||--
T Consensus 97 ~lD~~~i~~~PK-~~~GySDiTaL~~al~~~~G~~t~hGp~ 136 (331)
T 4e5s_A 97 YLDYDLIRENPK-FFCGYSDITALNNAIYTKTGLVTYSGPH 136 (331)
T ss_dssp GCCHHHHHTSCC-EEEECGGGHHHHHHHHHHHCBCEEECCC
T ss_pred hcChhHHHhCCe-EEEEecchHHHHHHHHHhhCCcEEEccc
Confidence 75 345544332 22335554455544443 22367644
No 246
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=41.66 E-value=1e+02 Score=27.19 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=46.0
Q ss_pred cHHHHHHh-HHHHHHHHHHHhh-cCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchh--hHHHHHH
Q 042073 22 NVALVEAG-CVNLARHIANTKA-YGVNVV-VAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKG--AVDLGIA 96 (225)
Q Consensus 22 N~~al~~G-~~NL~~HIeNi~~-fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~G--a~~LA~~ 96 (225)
|+.+++.| ..-+..-|..++. -+-|++ |.|-. .--|++|+....+.|.++|+..+-.|+.|..||.- ..+|-++
T Consensus 148 Nig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt-~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~ 226 (288)
T 3oa3_A 148 NYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILET-SQLTADEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSA 226 (288)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCG-GGCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHH
T ss_pred ehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHH
Confidence 66666655 3445556666665 232322 22222 11368899999999999999745567788877643 3444455
Q ss_pred HHH
Q 042073 97 VQR 99 (225)
Q Consensus 97 Vv~ 99 (225)
+++
T Consensus 227 ~v~ 229 (288)
T 3oa3_A 227 VCD 229 (288)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 247
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=41.59 E-value=1.1e+02 Score=26.62 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHHh-hcCCeEE-EEec------CCCCCcHHHHHHHHHHHHHcCCCeEEEccccc-cCc
Q 042073 34 ARHIANTK-AYGVNVV-VAVN------MFATDSEAELNAVRIAAMAAGAFDAVVCSHHA-HGG 87 (225)
Q Consensus 34 ~~HIeNi~-~fGvpvV-VAIN------~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa-~GG 87 (225)
++.++.|+ ..|+++| +.++ .+..+--+-++.+.++|.++|+. +.+.-|+. .|+
T Consensus 56 ~~d~~~l~~~~G~N~VRip~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~-VIld~H~~~~g~ 117 (364)
T 1g01_A 56 ENAFVALSNDWGSNMIRLAMYIGENGYATNPEVKDLVYEGIELAFEHDMY-VIVDWHVHAPGD 117 (364)
T ss_dssp HHHHHHHHTTSCCSEEEEEEESSSSSTTTCTTHHHHHHHHHHHHHHTTCE-EEEEEECCSSSC
T ss_pred HHHHHHHHHHCCCCEEEEEeeeCCCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCC
Confidence 46788885 7999988 6565 23333346788899999999996 88877763 344
No 248
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=41.55 E-value=47 Score=28.37 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=39.6
Q ss_pred cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
-+.|+++++|+-.--++++++...++.++.|...+.+| +.-|.|-.+|-+.+.+.+.
T Consensus 49 ~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iS---A~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 49 KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN---SVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC---TTTCTTGGGHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEE---CCCcccHHHHHHHHHHHHH
Confidence 47999999999766556777777777777788623333 3456777777776666553
No 249
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=41.29 E-value=56 Score=28.27 Aligned_cols=74 Identities=8% Similarity=-0.059 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHh-h---cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCC--CeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 30 CVNLARHIANTK-A---YGVNVVVAVNMFATDSEAELNAVRIAAMAAGA--FDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 30 ~~NL~~HIeNi~-~---fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~--~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.++...+..+. . .++|+||++|+-.-..+.+.+.+.+....... ..+-+-+.=++-|+|-.+|-+.+++.+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 248 VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 445555554442 2 39999999999764333233333332221111 11223344467789999999998887753
No 250
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Probab=41.15 E-value=74 Score=26.04 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=9.5
Q ss_pred HHHHHHHHhhcCCeEEE
Q 042073 33 LARHIANTKAYGVNVVV 49 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVV 49 (225)
++++++-.+++|+||++
T Consensus 128 f~~~~~la~~~~lPv~i 144 (272)
T 2y1h_A 128 LIRQIQLAKRLNLPVNV 144 (272)
T ss_dssp HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 44555555556666555
No 251
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=41.06 E-value=23 Score=27.94 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=39.7
Q ss_pred cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
++.|.+|++|+-....+. +++.+.+++++.+.. +.+-..-++=|+|-.+|-+.+.+.+.
T Consensus 163 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 163 MKTADLIVINKIDLADAVGADIKKMENDAKRINPD-AEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTT-SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 578999999997543322 366677777765432 22334556778998888888877654
No 252
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=40.86 E-value=28 Score=21.36 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCC
Q 042073 54 FATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 54 F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
+..-|++|+..+++.+++++++
T Consensus 9 wvggtpeelkklkeeakkanir 30 (36)
T 2ki0_A 9 WVGGTPEELKKLKEEAKKANIR 30 (36)
T ss_dssp CBCCCHHHHHHHHHHHHHHCCC
T ss_pred EecCCHHHHHHHHHHHHhccEE
Confidence 5568999999999999999887
No 253
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=46.72 E-value=5.8 Score=30.94 Aligned_cols=28 Identities=4% Similarity=0.096 Sum_probs=18.7
Q ss_pred HHHHH-HHHHHHhhc--CCeEEEEecCCCCC
Q 042073 30 CVNLA-RHIANTKAY--GVNVVVAVNMFATD 57 (225)
Q Consensus 30 ~~NL~-~HIeNi~~f--GvpvVVAIN~F~~D 57 (225)
+.++. ..++.++.+ ++|+||++|+..-.
T Consensus 117 ~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 117 FENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 44443 344555555 89999999997653
No 254
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=40.53 E-value=2e+02 Score=25.62 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHH--hhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccc---cccCch---hhHHHHHHHHHH
Q 042073 29 GCVNLARHIANT--KAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSH---HAHGGK---GAVDLGIAVQRA 100 (225)
Q Consensus 29 G~~NL~~HIeNi--~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~---wa~GG~---Ga~~LA~~Vv~~ 100 (225)
|+....+++... +.++.|++|-|+ .++.+|.....+.+++.|+.+...-+. -.+|+. ...++..+++++
T Consensus 111 G~~~~~~~l~~~~~~~~~~pvivsI~---g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~a 187 (345)
T 3oix_A 111 GINYYLDYVTELQKQPDSKNHFLSLV---GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSE 187 (345)
T ss_dssp CHHHHHHHHHHHHHSTTCCCCEEEEC---CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccCCCCEEEEec---CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHH
Confidence 444455555553 247899888776 356888888877777778752322222 223542 123666777777
Q ss_pred hhcCCC-C--cccccCCCCCHHHHHHHHHhHhccCCCC
Q 042073 101 CENVTQ-P--LKFLYPSDVSIKEKIDTIARSYGASGVE 135 (225)
Q Consensus 101 ~e~~~~-~--f~~lY~~~~~i~eKI~~IA~IYGA~~V~ 135 (225)
+.+..+ + .|.- .+.++ +.+.++|..-||++|+
T Consensus 188 v~~~~~~PV~vKi~--p~~~~-~~~a~~~~~aga~~i~ 222 (345)
T 3oix_A 188 VFTYFTKPLGIKLP--PYFDI-VHFDQAAAIFNXYPLT 222 (345)
T ss_dssp HTTTCCSCEEEEEC--CCCCH-HHHHHHHHHHTTSCCS
T ss_pred HHHHhCCCeEEEEC--CCCCH-HHHHHHHHHhCCCceE
Confidence 653211 1 2211 11333 4455666656777664
No 255
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=40.31 E-value=77 Score=26.99 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=63.1
Q ss_pred HHHHHHHhhcC-----CeEEE----EecCC-------CC---CcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHH
Q 042073 34 ARHIANTKAYG-----VNVVV----AVNMF-------AT---DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLG 94 (225)
Q Consensus 34 ~~HIeNi~~fG-----vpvVV----AIN~F-------~~---DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA 94 (225)
..|++-+++|| +.+|- .+|-= ++ ++++.+..+.+.+.-.+.. ++-... .|=.+..++-
T Consensus 97 g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~-~VYl~s--~G~~~~~~~i 173 (240)
T 1viz_A 97 GMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP-IFYLEY--SGVLGDIEAV 173 (240)
T ss_dssp HHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS-EEEEEC--TTSCCCHHHH
T ss_pred chhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCC-EEEEeC--CCccChHHHH
Confidence 45677788899 76665 44431 12 4466666555554433444 444444 3555556666
Q ss_pred HHHHHHhhcCCCCcccccCCCCCHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 042073 95 IAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIK 145 (225)
Q Consensus 95 ~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~IYGA~~V~~s~~A~~~l~ 145 (225)
+++.+.+. .....+--.-+=.|.+++++. ||++|..-..+-+.++
T Consensus 174 ~~i~~~~~----~~Pv~vGgGI~t~e~a~~~~~--gAd~VIVGSa~v~~~~ 218 (240)
T 1viz_A 174 KKTKAVLE----TSTLFYGGGIKDAETAKQYAE--HADVIVVGNAVYEDFD 218 (240)
T ss_dssp HHHHHTCS----SSEEEEESSCCSHHHHHHHHT--TCSEEEECTHHHHCHH
T ss_pred HHHHHhcC----CCCEEEEeccCCHHHHHHHHh--CCCEEEEChHHHhCHH
Confidence 66555431 345666666666778888777 8999998887777666
No 256
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=40.28 E-value=63 Score=27.37 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=31.0
Q ss_pred CCeEEEEecC-CCC---CcHHHHHHHHHHHHHcCCCeEEEccccccCch
Q 042073 44 GVNVVVAVNM-FAT---DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGK 88 (225)
Q Consensus 44 GvpvVVAIN~-F~~---DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~ 88 (225)
+...|+..|- .++ =+.++++.|.++|++.|+. +.+-++|+.++-
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~-li~Dea~~~~~~ 226 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT-VIADQLYSRLRY 226 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEECTTTTSBC
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCE-EEEEcccccccc
Confidence 3445555543 223 2578899999999999996 888888886543
No 257
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=39.98 E-value=19 Score=32.66 Aligned_cols=84 Identities=10% Similarity=0.053 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCC-----CCcHH-HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHH-HHHhhcC
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFA-----TDSEA-ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV-QRACENV 104 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~-----~DT~~-Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~V-v~~~e~~ 104 (225)
.+++=++.++++|..|++.=|.+. +-|++ -.+-|.++...-.++ +++| +.||.|+..|-..+ -+.+.++
T Consensus 62 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~-aI~~---~rGGyga~rlLp~LD~~~i~~~ 137 (371)
T 3tla_A 62 RFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDIT-CIMS---TIGGDNSNSLLPFLDYDAIIAN 137 (371)
T ss_dssp HHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEE-EEEE---SCCCSCGGGGGGGSCHHHHHHS
T ss_pred HHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCC-EEEE---ccccccHHHHHhhcChhhHHhC
Confidence 445555666789999999865433 33444 455556666656774 7766 57999999988775 3455443
Q ss_pred CCCcccccCCCCCHHH
Q 042073 105 TQPLKFLYPSDVSIKE 120 (225)
Q Consensus 105 ~~~f~~lY~~~~~i~e 120 (225)
|. .=.=|.+--.|--
T Consensus 138 PK-~fiGySDiTaL~~ 152 (371)
T 3tla_A 138 PK-IIIGYSDTTALLA 152 (371)
T ss_dssp CC-EEEECGGGHHHHH
T ss_pred Cc-EEEEechHHHHHH
Confidence 32 2233555444443
No 258
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=39.82 E-value=30 Score=29.41 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=55.4
Q ss_pred hhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHH
Q 042073 41 KAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120 (225)
Q Consensus 41 ~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~e 120 (225)
.+.|+|+|+.-=-| |+++++.|+++|++ ++ +..+..|+-|-.=-..|++...+.+.. |+.+
T Consensus 73 l~~g~~vVigTTG~---s~e~~~~l~~aa~~--~~-v~~a~N~S~Gv~l~~~~~~~aa~~l~~--------~die----- 133 (243)
T 3qy9_A 73 EDFHLPLVVATTGE---KEKLLNKLDELSQN--MP-VFFSANMSYGVHALTKILAAAVPLLDD--------FDIE----- 133 (243)
T ss_dssp SCCCCCEEECCCSS---HHHHHHHHHHHTTT--SE-EEECSSCCHHHHHHHHHHHHHHHHTTT--------SEEE-----
T ss_pred HhcCCceEeCCCCC---CHHHHHHHHHHHhc--CC-EEEECCccHHHHHHHHHHHHHHHhcCC--------CCEE-----
Confidence 56899999863333 57889999999886 53 678888888766666666655554421 3321
Q ss_pred HHHHHHhHhccCCCC-CCHHHHHHHHHHHHCCC
Q 042073 121 KIDTIARSYGASGVE-YSEEAEKQIKMYTRQGF 152 (225)
Q Consensus 121 KI~~IA~IYGA~~V~-~s~~A~~~l~~~e~~G~ 152 (225)
|-..-....+. =|-.|.+-.+.++.+|-
T Consensus 134 ----I~E~HH~~K~DaPSGTA~~la~~i~~~~~ 162 (243)
T 3qy9_A 134 ----LTEAHHNKKVDAPSGTLEKLYDVIVSLKE 162 (243)
T ss_dssp ----EEEEECTTCCSSSCHHHHHHHHHHHHHST
T ss_pred ----EEEcCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence 11133344444 36667766667755553
No 259
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=39.39 E-value=24 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHhhcCCe----EEEEecCCCCCcHHHHHHHHHHHHHcCCCeEE
Q 042073 38 ANTKAYGVN----VVVAVNMFATDSEAELNAVRIAAMAAGAFDAV 78 (225)
Q Consensus 38 eNi~~fGvp----vVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~a 78 (225)
||+++|-+| ++|++.-|+ ++|.+.|.+...++|.. +.
T Consensus 12 ~~~~~~~~p~F~g~~Ic~sGf~---~~er~~l~~~i~~~GG~-~~ 52 (112)
T 3l46_A 12 ENLYFQGVPPFQDCILSFLGFS---DEEKTNMEEMTEMQGGK-YL 52 (112)
T ss_dssp ------CCCTTTTCEECEESCC---HHHHHHHHHHHHHTTCE-EC
T ss_pred ccccccCCCccCCeEEEEeCCC---HHHHHHHHHHHHHcCCE-EC
Confidence 688889998 499999997 45788888999999985 53
No 260
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=39.20 E-value=51 Score=25.00 Aligned_cols=70 Identities=14% Similarity=-0.016 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHh----hcCCeEEEEecCCCCCcHHHHHHHHHHHH-----HcCCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTK----AYGVNVVVAVNMFATDSEAELNAVRIAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~----~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~-----~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++.++++.+. ..+.|++++.|+-.-....+.+.+.+... ..++. +-+.=++=|+|-.+|-+.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~g~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 99 FEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQ---IQSCSALTGEGVQDGMNWVCKN 175 (181)
T ss_dssp HHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE---EEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceE---EEEccCCCCCCHHHHHHHHHHH
Confidence 455556665553 26899999999976533222222322211 12232 2233456688888888888776
Q ss_pred hh
Q 042073 101 CE 102 (225)
Q Consensus 101 ~e 102 (225)
+.
T Consensus 176 ~~ 177 (181)
T 1fzq_A 176 VN 177 (181)
T ss_dssp C-
T ss_pred HH
Confidence 53
No 261
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=38.38 E-value=1.7e+02 Score=24.27 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=74.9
Q ss_pred HHHHHHHHhhcCCeEEEEe-----------c----CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHH
Q 042073 33 LARHIANTKAYGVNVVVAV-----------N----MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 97 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAI-----------N----~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~V 97 (225)
.....+.++++++|+|..- + ++..|...+...+.++..+.|.+++++-. . ...-+.+.++..
T Consensus 95 ~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~--~-~~~~~~~~~~~~ 171 (375)
T 4evq_A 95 AMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVT--W-KYAAGEEMVSGF 171 (375)
T ss_dssp HHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE--E-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEe--c-CchHHHHHHHHH
Confidence 3444566778999998642 1 23456678888889999999998777652 3 334456777777
Q ss_pred HHHhhcCCCCc--ccccCCC-CCHHHHHHHHHhHhccCCCC---CCHHHHHHHHHHHHCCCCCCCeeE
Q 042073 98 QRACENVTQPL--KFLYPSD-VSIKEKIDTIARSYGASGVE---YSEEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 98 v~~~e~~~~~f--~~lY~~~-~~i~eKI~~IA~IYGA~~V~---~s~~A~~~l~~~e~~G~~~lPVCm 159 (225)
.+.+++..-++ ...|+.. .+...-++++.. -+++-|. ....|..-++++.++|+. .|+.-
T Consensus 172 ~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~~dai~~~~~~~~a~~~~~~~~~~g~~-vp~~~ 237 (375)
T 4evq_A 172 KKSFTAGKGEVVKDITIAFPDVEFQSALAEIAS-LKPDCVYAFFSGGGALKFIKDYAAANLG-IPLWG 237 (375)
T ss_dssp HHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEECCTHHHHHHHHHHHHTTCC-CCEEE
T ss_pred HHHHHHcCCeEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHHHcCCC-ceEEe
Confidence 77776432111 2233322 334444444432 1333333 257888889999999997 77754
No 262
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=38.34 E-value=1.1e+02 Score=25.00 Aligned_cols=94 Identities=22% Similarity=0.266 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhh---H---HHHHHHHHHhhcCCC
Q 042073 33 LARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGA---V---DLGIAVQRACENVTQ 106 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga---~---~LA~~Vv~~~e~~~~ 106 (225)
+.+-++..+++|+.++|.+.- +. |.+.+ .+.|..-+.+...|+-| -|. . +-++.+.+.+..-+.
T Consensus 100 ~~~~~~~a~~~Gl~~iv~v~~----~~-e~~~~----~~~~~~~i~~~~~~~iG-tG~~~~t~~~~~~~~~~~~ir~~~~ 169 (219)
T 2h6r_A 100 IEAVINKCKNLGLETIVCTNN----IN-TSKAV----AALSPDCIAVEPPELIG-TGIPVSKANPEVVEGTVRAVKEINK 169 (219)
T ss_dssp HHHHHHHHHHHTCEEEEEESS----SH-HHHHH----TTTCCSEEEECCCC---------------CSHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCeEEEEeCC----ch-HHHHH----HhCCCCEEEEEeccccc-cCCCCccCCHHHHHHHHHHHHhccC
Confidence 566677788899999999963 23 22222 33455446788899877 662 1 113455555543233
Q ss_pred CcccccCCCCCHHHHHHHHHhHhccCCCCCC
Q 042073 107 PLKFLYPSDVSIKEKIDTIARSYGASGVEYS 137 (225)
Q Consensus 107 ~f~~lY~~~~~i~eKI~~IA~IYGA~~V~~s 137 (225)
....+|.-.-+-.+-++.+. -+|+++|.--
T Consensus 170 ~~~ii~ggGI~~~~~~~~~~-~~gaDgvlVG 199 (219)
T 2h6r_A 170 DVKVLCGAGISKGEDVKAAL-DLGAEGVLLA 199 (219)
T ss_dssp TCEEEECSSCCSHHHHHHHH-TTTCCCEEES
T ss_pred CCeEEEEeCcCcHHHHHHHh-hCCCCEEEEc
Confidence 56788887766666666543 4577776543
No 263
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=38.20 E-value=75 Score=27.02 Aligned_cols=51 Identities=2% Similarity=-0.100 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 30 CVNLARHIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 30 ~~NL~~HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
.+++.+-++.+++ .++|++|=++-.. +.+|+..+.+.+++.|+.-+.+++.
T Consensus 143 ~e~~~~iv~~vr~~~~~Pv~vKi~~~~--~~~~~~~~a~~~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 143 FEATEKLLKEVFTFFTKPLGVKLPPYF--DLVHFDIMAEILNQFPLTYVNSVNS 194 (311)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEEECCCC--SHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCC--CHHHHHHHHHHHHHcCCcEEEecCC
Confidence 3456777888877 5899999776543 5778888888899999975555544
No 264
>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} SCOP: b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=38.06 E-value=12 Score=30.29 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=38.6
Q ss_pred CCCCCCCeeEeecCCCcCCCCCCCceEEeeEEEeecCCceeeeecccccccC-CCCCCCceeeeeeeCCCCeeecc
Q 042073 150 QGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTML-GLPTRPCFYEIDGDTATGRVLGL 224 (225)
Q Consensus 150 ~G~~~lPVCmAKTqyS~Sdd~P~~f~~~vrdv~~~~GAgFiv~~~G~i~tMP-GLpk~Paa~~idvd~~~G~I~GL 224 (225)
+-|.++|+||----+-++++.|++|- ....|| |-++|...|.| |..++-.+-+==+| ++|+++++
T Consensus 59 lE~a~~p~~Mksda~~yt~e~peg~Y------NWhhGa---Vqy~~grftvp~GvG~~GDSGRpI~D-N~GrVVai 124 (161)
T 1svp_A 59 MEFAQLPVNMRSEAFTYTSEHPEGFY------NWHHGA---VQYSGGRFTIPRGVGGRGDAGRPIMD-NSGRVVAI 124 (161)
T ss_dssp EEEEECCGGGSTTCBCBCSCCCSEEE------EETTEE---EEEETTEEEEETTSCCTTCTTCEEEC-TTSCEEEE
T ss_pred hhhhhcchhhhhhhhhhhhcCCCcee------ccccce---EEEeCCeEEecccCCCCCCCCCccCc-CCCcEEEE
Confidence 45789999996666678888999952 223333 33444444444 33343333333456 77887764
No 265
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.90 E-value=1.6e+02 Score=23.83 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCeEEEEecCCC-------------CCcHHHHHHHHHHHHHcC--CCeEEEccccccCchhhHHHHHHHHH
Q 042073 35 RHIANTKAYGVNVVVAVNMFA-------------TDSEAELNAVRIAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQR 99 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~F~-------------~DT~~Ei~~i~~~c~~~g--~~~~avs~~wa~GG~Ga~~LA~~Vv~ 99 (225)
..++.+++.|+|||. +|+-. .|..+--..+.++..++| .+.+++-. ...+.....+-.+...+
T Consensus 77 ~~~~~~~~~giPvV~-~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~-g~~~~~~~~~R~~Gf~~ 154 (297)
T 3rot_A 77 KSLQRANKLNIPVIA-VDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLN-PQPGHIGLEKRAYGIKT 154 (297)
T ss_dssp HHHHHHHHHTCCEEE-ESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEE-SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEE-EcCCCccccccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEe-CCCCcHHHHHHHHHHHH
Confidence 345555666676544 33222 133344444555555555 44343332 12233333344444555
Q ss_pred Hhhc
Q 042073 100 ACEN 103 (225)
Q Consensus 100 ~~e~ 103 (225)
++++
T Consensus 155 ~l~~ 158 (297)
T 3rot_A 155 ILQD 158 (297)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 266
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.78 E-value=23 Score=23.64 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=10.3
Q ss_pred HHHhHHHHHHHHHHHh
Q 042073 26 VEAGCVNLARHIANTK 41 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~ 41 (225)
|++-++||++.|.|+.
T Consensus 36 lekdianlekdianle 51 (56)
T 3he4_A 36 LEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666664
No 267
>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A
Probab=37.65 E-value=13 Score=29.77 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=37.7
Q ss_pred CCCCCCCeeEeecCCCcCCCCCCCc-eEEeeEEEeecCCceeeeecccccccC-CCCCCCceeeeeeeCCCCeeecc
Q 042073 150 QGFSGLPFCMAKTQHSFSHNAPTGF-ILPIRDVRASIGAGFIYPLVGTISTML-GLPTRPCFYEIDGDTATGRVLGL 224 (225)
Q Consensus 150 ~G~~~lPVCmAKTqyS~Sdd~P~~f-~~~vrdv~~~~GAgFiv~~~G~i~tMP-GLpk~Paa~~idvd~~~G~I~GL 224 (225)
+-|.++|+||----++++++.|++| .-|=--|+.+ |...|.| |..+.-..-+==+| ++|+++++
T Consensus 50 lE~a~~p~~Mksda~~yt~e~p~g~YNWhhGaVqy~----------~grftvp~G~g~~GdSGrpI~D-n~GrVVaI 115 (149)
T 1vcp_A 50 LECAQIPVHMRSDASKYTHEKPEGHYNWHHGAVQYS----------GGRFTIPTGAGKPGDSGRPIFD-NKGRVVAI 115 (149)
T ss_dssp EEEEECCGGGGGGCBCBCSCCCSEEEEETTEEEEEE----------TTEEEEETTSCCTTCTTCEEEC-TTSCEEEE
T ss_pred hhhhhcchhhhhhhhhhhhcCCCceeccccceEEEe----------CCeEEecccCCCCCCCCCccCc-CCCcEEEE
Confidence 4578999999777788999999985 3333333333 2333333 33333222233356 77887754
No 268
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=37.18 E-value=87 Score=25.18 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCCeEEEE-e----------c--------CCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 31 VNLARHIANTKAYGVNVVVA-V----------N--------MFATDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVA-I----------N--------~F~~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
+.+++.++.|+..|+++|=. + + ....+.-+.++.+.++|.+.|+. +.+.
T Consensus 42 ~~~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~-vil~ 109 (351)
T 3vup_A 42 NRIEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNIL-VFPC 109 (351)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred HHHHHHHHHHHHcCCcEEEECcccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 45788899999999999832 1 1 11224457789999999999996 6554
No 269
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=37.00 E-value=1.1e+02 Score=26.23 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=75.8
Q ss_pred ccccccccHHHHHHhHHHHHHHHHHHhhcCC-----eEEE----EecCCCCCcHHH----------HHHHHHHHH---H-
Q 042073 15 DHAYLNENVALVEAGCVNLARHIANTKAYGV-----NVVV----AVNMFATDSEAE----------LNAVRIAAM---A- 71 (225)
Q Consensus 15 ~~~l~~eN~~al~~G~~NL~~HIeNi~~fGv-----pvVV----AIN~F~~DT~~E----------i~~i~~~c~---~- 71 (225)
|+=++.+|.+.+ ..+|.+-+++||+ .+|- .+|- +|..+ ++.+..+|. +
T Consensus 87 pslln~~~~~~i------~g~~~~a~~~~gl~~~~~e~i~~gYivv~p---~s~v~~v~~a~~~~~~e~iaa~A~~a~~~ 157 (235)
T 3w01_A 87 PTVLNSTDVAFH------NGTLLEALKTYGHSIDFEEVIFEGYVVCNA---DSKVAKHTKANTDLTTEDLEAYAQMVNHM 157 (235)
T ss_dssp EEETTBSSGGGT------THHHHHHHHHHGGGCCGGGEEEEEEEECCS---SSHHHHHTTBCCCCCHHHHHHHHHHHHHT
T ss_pred ccccCCCCcchh------hhHHHHHHHHcCCCCcccceeeeeEEEECC---CCChhhcccCCcCCCHHHHHHHHHHHHHH
Confidence 344455555443 2467888999998 7666 5765 45555 777777764 1
Q ss_pred cCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHC
Q 042073 72 AGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQ 150 (225)
Q Consensus 72 ~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~IYGA~~V~~s~~A~~~l~~~e~~ 150 (225)
.|.+ +.-.+. .|--|..++-++|.+.+ .+....|--.-+=.|..+.++. ||++|..-....+..+.+.+.
T Consensus 158 ~g~~-~vY~e~--sG~~g~~~~v~~ir~~~----~~~pv~vGfGI~~~e~a~~~~~--gAD~VVVGSai~~~~~~~~e~ 227 (235)
T 3w01_A 158 YRLP-VMYIEY--SGIYGDVSKVQAVSEHL----TETQLFYGGGISSEQQATEMAA--IADTIIVGDIIYKDIKKALKT 227 (235)
T ss_dssp TCCS-EEEEEC--TTSCCCHHHHHHHHTTC----SSSEEEEESCCCSHHHHHHHHT--TSSEEEECTHHHHCHHHHHHT
T ss_pred cCCC-EEEEec--CCCcCCHHHHHHHHHhc----CCCCEEEECCcCCHHHHHHHHc--CCCEEEECCceecCHHHHHHH
Confidence 2554 554444 56667666655554432 1345666666666677777666 899999988888888777763
No 270
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=36.74 E-value=52 Score=29.33 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCC------CcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHH
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFAT------DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 97 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~------DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~V 97 (225)
.+++=++.++++|..|++.=|.+.. ..++-.+-+.++...-.++ +++| +.||.|+..|-..+
T Consensus 26 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlLp~L 93 (346)
T 4eys_A 26 EVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSID-MILC---AIGGDDTYRLLPYL 93 (346)
T ss_dssp HHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCC-EEEE---CCCCSCGGGGHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCC-EEEE---cccccCHHHHHHHh
Confidence 3444456667799999997665543 2345566666666777886 8776 67999999999887
No 271
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=36.71 E-value=40 Score=31.67 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
....|++.++.+++|++|++|+-.-......+.+.++.+.++..
T Consensus 122 ~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 122 RTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp HHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 45677888888999999999998654433334455555666764
No 272
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=36.63 E-value=87 Score=29.27 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCC---cHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATD---SEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~D---T~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
.|+...|+-+++.|..|.+.+ .|..+ +.+.+-.+.+.+.+.|+..+.+++.
T Consensus 127 ~ni~~~i~~ak~~G~~v~~~i-~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT 180 (464)
T 2nx9_A 127 RNMQQALQAVKKMGAHAQGTL-CYTTSPVHNLQTWVDVAQQLAELGVDSIALKDM 180 (464)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-ECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEET
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 589999999999999988888 44444 3444444555566788876667654
No 273
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=36.62 E-value=2e+02 Score=25.04 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=66.7
Q ss_pred cCCeEEEEecC----CCCCcHHHHHHHHH---HHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCC
Q 042073 43 YGVNVVVAVNM----FATDSEAELNAVRI---AAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSD 115 (225)
Q Consensus 43 fGvpvVVAIN~----F~~DT~~Ei~~i~~---~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~ 115 (225)
..+||.|-|.- |.-+ ++|++.+++ .|+++|+..+++-=.=.+| .=-.+.-+++++++..-+-.|+..+|.-
T Consensus 50 ~~ipv~vMIRPR~GdF~Ys-~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg-~iD~~~~~~Li~~a~~~~vTFHRAfD~~ 127 (256)
T 1twd_A 50 VTIPVHPIIRPRGGDFCYS-DGEFAAILEDVRTVRELGFPGLVTGVLDVDG-NVDMPRMEKIMAAAGPLAVTFHRAFDMC 127 (256)
T ss_dssp CCSCEEEBCCSSSSCSCCC-HHHHHHHHHHHHHHHHTTCSEEEECCBCTTS-SBCHHHHHHHHHHHTTSEEEECGGGGGC
T ss_pred cCCceEEEECCCCCCCcCC-HHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-CcCHHHHHHHHHHhCCCcEEEECchhcc
Confidence 58999999985 5554 888888765 5889999865544333333 3334555667777753334588888887
Q ss_pred CCHHHHHHHHHhHhccCCCCCC------HHHHHHHHHHHHC
Q 042073 116 VSIKEKIDTIARSYGASGVEYS------EEAEKQIKMYTRQ 150 (225)
Q Consensus 116 ~~i~eKI~~IA~IYGA~~V~~s------~~A~~~l~~~e~~ 150 (225)
....+-++.+... |-+.|==| .+-...|+++.+.
T Consensus 128 ~d~~~ale~L~~l-G~~rILTSG~~~~a~~g~~~L~~Lv~~ 167 (256)
T 1twd_A 128 ANPLYTLNNLAEL-GIARVLTSGQKSDALQGLSKIMELIAH 167 (256)
T ss_dssp SCHHHHHHHHHHH-TCCEEEECTTSSSTTTTHHHHHHHHTS
T ss_pred CCHHHHHHHHHHc-CCCEEECCCCCCCHHHHHHHHHHHHHh
Confidence 7777778877763 54444322 2334455555543
No 274
>3dqq_A Putative tRNA synthase; structural genomics, unknown function, center for structural genomics of infecti diseases; 2.70A {Salmonella typhimurium} SCOP: c.146.1.1
Probab=36.43 E-value=73 Score=29.11 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=39.8
Q ss_pred cHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHH
Q 042073 22 NVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMA 71 (225)
Q Consensus 22 N~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~ 71 (225)
+++.|++|...+..+++.++.-|..+|| |..-|++.++.|.+.+.+
T Consensus 171 ~l~~v~~g~~~~~~~l~~l~~~g~~~vV----~DA~~~~DL~~ia~a~~~ 216 (421)
T 3dqq_A 171 PAQTLDEGVAATRAALSRLQQEGYRYAV----LDALNERHLEIQGEVLRD 216 (421)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHTTCSEEE----ECBSSHHHHHHHHHHHTT
T ss_pred EHHHHhccHHHHHHHHHHHHhCCCcEEE----EeCCCHHHHHHHHHHHhc
Confidence 6778899998999999999887888777 788999999999998854
No 275
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=36.38 E-value=1.1e+02 Score=22.93 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCC---------CcHHHH----HHHHHHHHHcCCC
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFAT---------DSEAEL----NAVRIAAMAAGAF 75 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~---------DT~~Ei----~~i~~~c~~~g~~ 75 (225)
..||.+-|+.+++-|.++|+.- -.+. +..+.+ +.++++|++.|+.
T Consensus 100 ~~~~~~~i~~~~~~~~~vil~~-~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~ 157 (204)
T 3p94_A 100 FGNLVSMAELAKANHIKVIFCS-VLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLT 157 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEC-CCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCCeEEEEe-CCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCc
Confidence 3466666777777787776653 2222 122222 4577889988885
No 276
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=36.29 E-value=1.4e+02 Score=25.39 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=47.6
Q ss_pred ccccccHHHHHHhHHHHHHHHHHH-hhc--CCe-EEEEecCC-----------------CC---CcHHHHHHHHHHHHHc
Q 042073 17 AYLNENVALVEAGCVNLARHIANT-KAY--GVN-VVVAVNMF-----------------AT---DSEAELNAVRIAAMAA 72 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi-~~f--Gvp-vVVAIN~F-----------------~~---DT~~Ei~~i~~~c~~~ 72 (225)
+.-++|.+++.+-+..|.+-++.. ... +-. +|+.=..| .. =|.++|+.|.+.+++.
T Consensus 132 ~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 211 (282)
T 3mfq_A 132 EMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDH 211 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHc
Confidence 445578888888888888777653 332 122 33221222 11 2677888888888888
Q ss_pred CCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 73 GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 73 g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+++ +++.+--.. -.+++.+.+.+++
T Consensus 212 ~v~-~if~e~~~~-----~~~~~~l~~~a~~ 236 (282)
T 3mfq_A 212 NIK-AIFTESTTN-----PERMKKLQEAVKA 236 (282)
T ss_dssp TCC-EEECBTTSC-----THHHHHHHHHHHT
T ss_pred CCC-EEEEeCCCC-----hHHHHHHHHHHHh
Confidence 886 666654332 4456666655543
No 277
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=36.27 E-value=46 Score=25.03 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHH
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNA 64 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~ 64 (225)
.||++ |+...+-+.....+||+|+.=|++|...
T Consensus 51 ~Nl~~-I~~hN~~~~sy~lglN~FaDLT~eEF~~ 83 (106)
T 3f75_P 51 NNLVY-IHTHNQQGYSYSLKMNHFGDLSRDEFRR 83 (106)
T ss_dssp HHHHH-HHHHHTSCCSEEECCCTTTTCCHHHHHH
T ss_pred HHHHH-HHHHHhcCCCeeeCCcccccCCHHHHHH
Confidence 56644 5444333788999999999999999964
No 278
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=36.03 E-value=52 Score=29.22 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCeEEEE-ecCCCCC--------------cHHHHHHHHHHHHHcCCCeEEE
Q 042073 34 ARHIANTKAYGVNVVVA-VNMFATD--------------SEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVA-IN~F~~D--------------T~~Ei~~i~~~c~~~g~~~~av 79 (225)
..+++.|+..|++.|-. +--|+.| +++++..+.+.|+++|.. +.+
T Consensus 56 ~~~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~Ak~~GL~-V~l 115 (343)
T 3civ_A 56 RASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLK-VCL 115 (343)
T ss_dssp HHHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHcCCCEEEEEeeecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHCCCE-EEE
Confidence 47888898899988743 3334444 799999999999999996 755
No 279
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=35.98 E-value=93 Score=26.45 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CCCCCcHHHHHHHHHHHHHcCCCeEEEcccccc-Cchh
Q 042073 32 NLARHIANTKAYGVNVVVAVN-MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAH-GGKG 89 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN-~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~-GG~G 89 (225)
++.+=.+-...+|+|+=|.|- -+. |++|+....+.|.++|+..+-.|+.|.. ||.-
T Consensus 121 ei~~v~~a~~~~g~~lKvIlEt~~L--~~e~i~~a~ria~eaGADfVKTsTG~~~~~gAt 178 (234)
T 1n7k_A 121 EVSGIVKLAKSYGAVVKVILEAPLW--DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDP 178 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEECCGGGS--CHHHHHHHHHHHHHTTCSEEESCCSSSCCCCSH
T ss_pred HHHHHHHHHhhcCCeEEEEEeccCC--CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCC
Confidence 344433334568898755444 343 4789999999999999974445556775 5543
No 280
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=35.87 E-value=35 Score=30.20 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCeEEEEecC------CCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHH
Q 042073 33 LARHIANTKAYGVNVVVAVNM------FATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 96 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~------F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~ 96 (225)
+++=++.++++|..|++.=+. |....++-.+-+.++...-.++ +++| +.||.|+..|...
T Consensus 34 ~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~-aI~~---~rGGyga~rlLp~ 99 (311)
T 1zl0_A 34 LEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDIT-AVWC---LRGGYGCGQLLPG 99 (311)
T ss_dssp HHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEE-EEEE---SCCSSCGGGGTTT
T ss_pred HHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCC-EEEE---ccCCcCHHHHhhc
Confidence 344456667799999987543 4444455566667777777774 7766 6899999987763
No 281
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=35.70 E-value=87 Score=23.57 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=35.6
Q ss_pred EEecCCC-CCcH----HHHHHHHHHHH---HcCCC-eEEEccccccCchhhHHHHHHHHHHhhcCCC--CcccccCCCCC
Q 042073 49 VAVNMFA-TDSE----AELNAVRIAAM---AAGAF-DAVVCSHHAHGGKGAVDLGIAVQRACENVTQ--PLKFLYPSDVS 117 (225)
Q Consensus 49 VAIN~F~-~DT~----~Ei~~i~~~c~---~~g~~-~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~--~f~~lY~~~~~ 117 (225)
|.||-|+ +.++ .|+..+.+..+ +.|+. -+++|. +- . +.+.+-+++..- +|..++|.+
T Consensus 38 vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~---d~----~---~~~~~~~~~~~~~~~~~~l~D~~-- 105 (162)
T 1tp9_A 38 VILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISV---ND----P---FVMKAWAKSYPENKHVKFLADGS-- 105 (162)
T ss_dssp EEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEES---SC----H---HHHHHHHHTCTTCSSEEEEECTT--
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC---CC----H---HHHHHHHHhcCCCCCeEEEECCC--
Confidence 4566663 4443 67777766543 46776 566663 21 1 222233332222 577777654
Q ss_pred HHHHHHHHHhHhccC
Q 042073 118 IKEKIDTIARSYGAS 132 (225)
Q Consensus 118 i~eKI~~IA~IYGA~ 132 (225)
.++++-||..
T Consensus 106 -----~~~~~~~gv~ 115 (162)
T 1tp9_A 106 -----ATYTHALGLE 115 (162)
T ss_dssp -----SHHHHHTTCE
T ss_pred -----chHHHHcCcc
Confidence 3456677753
No 282
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=35.69 E-value=93 Score=24.82 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhcCC--eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 29 GCVNLARHIANTKAYGV--NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 29 G~~NL~~HIeNi~~fGv--pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
|-+=|++-++++++.|. .+||+.+. + .+.+++.+.|+. +...
T Consensus 26 g~pli~~~i~~~~~~~~~~~ivvv~~~------~---~i~~~~~~~~~~-~~~~ 69 (245)
T 1h7e_A 26 GKPMIQHVYERALQVAGVAEVWVATDD------P---RVEQAVQAFGGK-AIMT 69 (245)
T ss_dssp TEEHHHHHHHHHHTCTTCCEEEEEESC------H---HHHHHHHHTTCE-EEEC
T ss_pred CchHHHHHHHHHHhCCCCCeEEEECCc------H---HHHHHHHHcCCe-EEeC
Confidence 66778888999999885 67777652 2 455667778885 6554
No 283
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=35.66 E-value=1.5e+02 Score=22.96 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCeEEEEe----cCCC-----CCcHHHH----HHHHHHHHHcCCC
Q 042073 30 CVNLARHIANTKAYGVNVVVAV----NMFA-----TDSEAEL----NAVRIAAMAAGAF 75 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAI----N~F~-----~DT~~Ei----~~i~~~c~~~g~~ 75 (225)
..||.+-++.++.-|.++|+.- +.++ .+..+.+ +.++++|++.|+.
T Consensus 104 ~~~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~ 162 (209)
T 4hf7_A 104 FGNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIP 162 (209)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCe
Confidence 4677777888888888877652 3322 2334444 3467888999986
No 284
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=35.53 E-value=2e+02 Score=24.19 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCch-----hhHHHHHHHHHHhhcCCCC
Q 042073 33 LARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGK-----GAVDLGIAVQRACENVTQP 107 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~-----Ga~~LA~~Vv~~~e~~~~~ 107 (225)
+.+=++...+.|+-++|++.- .+|.+.+ ...+..-+++...|+.|.- =..+-++.+.+.+..-+..
T Consensus 103 ~~~k~~~A~~~GL~~ivcVge-----~~e~~~~----~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~ 173 (226)
T 1w0m_A 103 LARLVAKAKSLGLDVVVCAPD-----PRTSLAA----AALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPE 173 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEESS-----HHHHHHH----HHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCEEEEEeCC-----HHHHHHH----hcCCCCEEEEcChhhhccCCCCCCCChhHHHHHHHHHHhccCC
Confidence 567788889999999999853 3344333 3345545899999999842 1245567777776643455
Q ss_pred cccccCCCCCHHHHHHHHHhHhccCCC
Q 042073 108 LKFLYPSDVSIKEKIDTIARSYGASGV 134 (225)
Q Consensus 108 f~~lY~~~~~i~eKI~~IA~IYGA~~V 134 (225)
.+.+|.-.-+-.+=++.++ ..|+|++
T Consensus 174 ~~ilyggsV~~~n~~~~~~-~~giDG~ 199 (226)
T 1w0m_A 174 VSVITGAGIESGDDVAAAL-RLGTRGV 199 (226)
T ss_dssp SEEEEESSCCSHHHHHHHH-HTTCSEE
T ss_pred CEEEEeCCCCcHHHHHHHH-hCCCCEE
Confidence 7888877655444444443 3344444
No 285
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=35.41 E-value=32 Score=29.48 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhh-cC-------CeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 30 CVNLARHIANTKA-YG-------VNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 30 ~~NL~~HIeNi~~-fG-------vpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
..+|.|..+.+++ || +|=+| |-.|..+|..+|+| |..+|++-+++++-
T Consensus 134 ~~~~~r~~~kl~k~lgGik~m~~~Pdll----~v~Dp~~e~~ai~E-A~~l~IPvIaivDT 189 (231)
T 3bbn_B 134 AAVVKRQLSHLQTYLGGIKYMTGLPDIV----IIVDQQEEYTALRE-CITLGIPTICLIDT 189 (231)
T ss_dssp HHHHHHHHHHHTTSTTSTTSCCSCCSEE----EESCTTTTHHHHHH-HHTTTCCEEECCCS
T ss_pred HHHHHHHHHHHHHhhhcccccccCCCEE----EEeCCccccHHHHH-HHHhCCCEEEEecC
Confidence 3456677777766 44 78666 44678888877776 56799996666654
No 286
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=35.39 E-value=57 Score=29.33 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=41.1
Q ss_pred HHHHHHHHHH-HhhcCCeEEEEecCCCCCcHHH-HHHH-HHHHHHcCC-CeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIAN-TKAYGVNVVVAVNMFATDSEAE-LNAV-RIAAMAAGA-FDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeN-i~~fGvpvVVAIN~F~~DT~~E-i~~i-~~~c~~~g~-~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+......+.. +++.+.|+++++|+- |...+ -..+ .+++ ++|. ..+.+| +.=|.|-.+|-+.+++.+.
T Consensus 95 ~~~~d~~i~~~l~~~~~p~ilv~NK~--D~~~~~~~~~~~~~~-~lg~~~~~~iS---A~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 95 ITKEDESLADFLRKSTVDTILVANKA--ENLREFEREVKPELY-SLGFGEPIPVS---AEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp CCHHHHHHHHHHHHHTCCEEEEEESC--CSHHHHHHHTHHHHG-GGSSCSCEECB---TTTTBSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEeCC--CCccccHHHHHHHHH-hcCCCCEEEEe---ccCCCCHHHHHHHHHHhcc
Confidence 3333334433 345799999999996 43332 1223 5554 5676 313333 5668899999999988765
No 287
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=35.36 E-value=31 Score=25.17 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=39.7
Q ss_pred ccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecC-----CCCCcHHHHHHHHHHHHHcCCCeEEEcccc
Q 042073 19 LNENVALVEAGCVNLARHIANTKAYGVNVVVAVNM-----FATDSEAELNAVRIAAMAAGAFDAVVCSHH 83 (225)
Q Consensus 19 ~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~-----F~~DT~~Ei~~i~~~c~~~g~~~~avs~~w 83 (225)
++.+.+.+..+|.|...|++... ++.++|.+|- |..|++ -.+.|.++ .+.|+. +.+|..-
T Consensus 11 ~~~d~~~~~~~L~~a~n~~~~~~--~~~i~vv~~G~av~~~~~~~~-~~~~i~~L-~~~gV~-~~~C~~~ 75 (113)
T 1l1s_A 11 DEDDESRVLLLISNVRNLMADLE--SVRIEVVAYSMGVNVLRRDSE-YSGDVSEL-TGQGVR-FCACSNT 75 (113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCS--SEEEEEEECGGGGGGGBTTCT-THHHHHHH-HHTTCE-EEEEHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEechHHHHHHcCCh-HHHHHHHH-HHCCCE-EEecHHH
Confidence 44677888999999988887744 4677777763 433332 22344444 468996 9999753
No 288
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=35.07 E-value=52 Score=30.08 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=29.5
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHHHH----HHHHHHHHcCCC
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAELN----AVRIAAMAAGAF 75 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~Ei~----~i~~~c~~~g~~ 75 (225)
++.++. ++|+|+++|+-..-|+.|+. .+.+++...|+.
T Consensus 161 lk~L~~-~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~ 202 (418)
T 2qag_C 161 MKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK 202 (418)
T ss_dssp HHHHTT-TSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhc-cCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCe
Confidence 344444 89999999999888888885 466777788876
No 289
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=34.90 E-value=1.7e+02 Score=25.03 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=43.7
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHh-h-cCCeEEEEecCC--------------------CCCcHHHHHHHHHHHHHcCC
Q 042073 17 AYLNENVALVEAGCVNLARHIANTK-A-YGVNVVVAVNMF--------------------ATDSEAELNAVRIAAMAAGA 74 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~-~-fGvpvVVAIN~F--------------------~~DT~~Ei~~i~~~c~~~g~ 74 (225)
+.-++|.+++.+-+..|.+-++..- . =+.++||.=..| ..=|.++|+.|.+.+++.++
T Consensus 150 ~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v 229 (286)
T 3gi1_A 150 DSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNV 229 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4455788888888888888887643 2 245555543332 12356778888888888888
Q ss_pred CeEEEccccc
Q 042073 75 FDAVVCSHHA 84 (225)
Q Consensus 75 ~~~avs~~wa 84 (225)
+ +++.+-..
T Consensus 230 ~-~if~e~~~ 238 (286)
T 3gi1_A 230 K-TIFAEDNV 238 (286)
T ss_dssp C-EEEECTTS
T ss_pred C-EEEEeCCC
Confidence 6 76666544
No 290
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=34.77 E-value=1.2e+02 Score=26.23 Aligned_cols=58 Identities=16% Similarity=-0.004 Sum_probs=40.2
Q ss_pred HHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEcccc
Q 042073 26 VEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHH 83 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~w 83 (225)
.+.-++.+.++|+-.++.|..|.+.+=-...-+.+.+..+.+.+.+.|+..+.+++--
T Consensus 116 ~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 173 (293)
T 3ewb_X 116 RAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTV 173 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 3455677889999999999998876642222235556666666778999877777753
No 291
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=34.70 E-value=1.6e+02 Score=28.09 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCeEEEEecCCCC
Q 042073 34 ARHIANTKAYGVNVVVAVNMFAT 56 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~ 56 (225)
..|++.++.+++|+||++|+-..
T Consensus 112 ~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 112 QEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEeccccc
Confidence 34455567799999999998643
No 292
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=34.47 E-value=1.7e+02 Score=25.11 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=64.2
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc-C---------C-
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN-V---------T- 105 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~-~---------~- 105 (225)
|+.+++.|.+++.=+-+ .|-..-.+...+.+.++|+. + .++.+-||...++=|.+..+.... . +
T Consensus 71 v~~Lk~~g~~VflDlK~--~DIpnTv~~a~~~~~~~gaD-~--vTVh~~~G~~~~~~a~~~~~~~g~~~~~li~VtvLTS 145 (255)
T 3ldv_A 71 VRELHKRGFSVFLDLKF--HDIPNTCSKAVKAAAELGVW-M--VNVHASGGERMMAASREILEPYGKERPLLIGVTVLTS 145 (255)
T ss_dssp HHHHHHTTCCEEEEEEE--CSCHHHHHHHHHHHHHTTCS-E--EEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECSCTT
T ss_pred HHHHHhcCCCEEEEEec--ccchhHHHHHHHHHHhcCCC-E--EEEeccCCHHHHHHHHHHHhhcCCCCceEEEEEEEec
Confidence 44455668887765554 46666555555556789996 4 367788888887766665532110 0 0
Q ss_pred -C--Cccc-ccCCCCCHHHHHHHHHh---HhccCCCCCCHHHHHHHHHH
Q 042073 106 -Q--PLKF-LYPSDVSIKEKIDTIAR---SYGASGVEYSEEAEKQIKMY 147 (225)
Q Consensus 106 -~--~f~~-lY~~~~~i~eKI~~IA~---IYGA~~V~~s~~A~~~l~~~ 147 (225)
+ .++- -| ..++.+.+.++|+ -+|.++|+.|+.-.+.|++.
T Consensus 146 ~s~~~l~~~g~--~~~~~~~V~~~A~~a~~aG~~GvV~sa~e~~~iR~~ 192 (255)
T 3ldv_A 146 MESADLQGIGI--LSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQH 192 (255)
T ss_dssp CCHHHHHHTTC--CSCHHHHHHHHHHHHHHTTCSEEECCHHHHHHHHHH
T ss_pred CCHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHh
Confidence 1 1221 13 3588888888887 45789999998744555443
No 293
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=34.40 E-value=16 Score=34.83 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCc------HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDS------EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT------~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
.-..|+..++..|+|+||++|+-.... .+++......+.+.+.. +.+-..=+.=|+|-.+|-+.+...++
T Consensus 92 qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~-~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 92 QTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGD-VQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSS-EEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCC-ceEEEEECCCCCCchhHHHHHHHhhh
Confidence 345678888889999999999864321 11221111112223322 34445557778999999999888775
No 294
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis; 2.35A {Pyrococcus furiosus}
Probab=34.15 E-value=44 Score=31.42 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 042073 27 EAGCVNLARHIANTKAYGVNVVVAVNMFAT 56 (225)
Q Consensus 27 ~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~ 56 (225)
++|+.-+.+=|+.+++.|+-++|.+++|..
T Consensus 125 ~~g~~~Y~~~id~l~~~Gi~pivtL~H~~l 154 (473)
T 3apg_A 125 MEALEHYRKIYSDWKERGKTFILNLYHWPL 154 (473)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEESCCSCC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 899999999999999999999999999843
No 295
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=34.01 E-value=45 Score=30.04 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC--eEEEccccccCchhhHHHHHHHH
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~--~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
=+.+|++-.+.+|+||++=. +...|.. +.+ +..++.|++ .++++-.+.. +..+.|++.+
T Consensus 170 ~f~aq~~~A~e~glPViiH~-r~gr~a~---d~l-~iL~e~g~~~~~vvi~H~~~~---~~~~~a~~~l 230 (363)
T 3ovg_A 170 ALEVAARTSILTGCPILVHT-QLGTMAL---EVA-KHLIGFGANPDKIQISHLNKN---PDKYYYEKVI 230 (363)
T ss_dssp HHHHHHHHHHHHCCCEEEEE-ETTCSHH---HHH-HHHHHHTCCGGGEEEECGGGS---CCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEeC-CCCCCHH---HHH-HHHHhcCCCCCcEEEEcCCCC---CCHHHHHHHH
Confidence 47788888888999977743 2223333 333 444445553 2455555433 3466677776
No 296
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=33.95 E-value=49 Score=30.29 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCe-EEEEecCCCCCc--HHHHHH----HHHHHHHcCC
Q 042073 31 VNLARHIANTKAYGVN-VVVAVNMFATDS--EAELNA----VRIAAMAAGA 74 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvp-vVVAIN~F~~DT--~~Ei~~----i~~~c~~~g~ 74 (225)
.....|+..++..|+| +||++|+-..-. ++.++. +.++.++.|.
T Consensus 157 ~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 207 (483)
T 3p26_A 157 GQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 207 (483)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCC
Confidence 4567889999999976 999999975422 344443 3444445554
No 297
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=33.84 E-value=58 Score=28.76 Aligned_cols=55 Identities=5% Similarity=-0.049 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHhhcCCeEEEEecCCCCCc---HHHHHHHHHHHHHcCCCeEEEccc
Q 042073 28 AGCVNLARHIANTKAYGVNVVVAVNMFATDS---EAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 28 ~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT---~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
.-+.++.++|+.++++|..|.+.+=.|+..+ .+.+..+.+.+.+.|+..+.+++.
T Consensus 134 e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT 191 (337)
T 3ble_A 134 EFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLPDT 191 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3478999999999999999888765433333 444445555566889987778776
No 298
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=33.82 E-value=2.2e+02 Score=24.20 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=59.3
Q ss_pred hhcCCeEEEEecC----CCCCcHHHHHHHHH---HHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccC
Q 042073 41 KAYGVNVVVAVNM----FATDSEAELNAVRI---AAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 113 (225)
Q Consensus 41 ~~fGvpvVVAIN~----F~~DT~~Ei~~i~~---~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~ 113 (225)
+...+||.|-|.- |.-+ ++|++..++ .|+++|+..+++-=.=.+| .=-.+.-+++++++..-+-.|+..+|
T Consensus 51 ~~~~ipV~vMIRPR~GdF~Ys-~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg-~iD~~~~~~Li~~a~~~~vTFHRAFD 128 (224)
T 2bdq_A 51 HEKGISVAVMIRPRGGNFVYN-DLELRIMEEDILRAVELESDALVLGILTSNN-HIDTEAIEQLLPATQGLPLVFHMAFD 128 (224)
T ss_dssp HHTTCEEEEECCSSSSCSCCC-HHHHHHHHHHHHHHHHTTCSEEEECCBCTTS-SBCHHHHHHHHHHHTTCCEEECGGGG
T ss_pred hhcCCceEEEECCCCCCCcCC-HHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-CcCHHHHHHHHHHhCCCeEEEECchh
Confidence 4567999999985 5544 888888865 5889999865553332333 33345556777777533345888887
Q ss_pred CC--CCHHHHHHHHHhHhccCCC
Q 042073 114 SD--VSIKEKIDTIARSYGASGV 134 (225)
Q Consensus 114 ~~--~~i~eKI~~IA~IYGA~~V 134 (225)
.- ....+-++.+... |-+.|
T Consensus 129 ~~~~~d~~~ale~L~~l-Gv~rI 150 (224)
T 2bdq_A 129 VIPKSDQKKSIDQLVAL-GFTRI 150 (224)
T ss_dssp GSCTTTHHHHHHHHHHT-TCCEE
T ss_pred ccCCcCHHHHHHHHHHc-CCCEE
Confidence 76 6666667777652 44333
No 299
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=33.60 E-value=71 Score=27.19 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=35.0
Q ss_pred eEEEEecC--CCCC---cHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 46 NVVVAVNM--FATD---SEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 46 pvVVAIN~--F~~D---T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
..+|.++. .|+- +.++++.|.++|++.|+. +.+-+.|...+.+..
T Consensus 176 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~-li~Deay~~~~~~~~ 225 (401)
T 7aat_A 176 SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLL-AYFDMAYQGFASGDI 225 (401)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCE-EEEEESCTTTTTSCH
T ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcE-EEEccccccccCCCc
Confidence 35666654 4555 789999999999999996 888889888776654
No 300
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=33.58 E-value=1.7e+02 Score=24.21 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=57.7
Q ss_pred HHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCC--cccccC
Q 042073 37 IANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQP--LKFLYP 113 (225)
Q Consensus 37 IeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~--f~~lY~ 113 (225)
|+.+++ .|.+++.=+-.. |-++=.+...+.+.++|+. . .+++..+|...++=+.+.++... ..- +..+.+
T Consensus 56 v~~l~~~~g~~v~lD~Kl~--DipnTv~~~~~~~~~~gad-~--vtvh~~~G~~~l~~~~~~~~~~g--~~v~vLt~~s~ 128 (228)
T 3m47_A 56 IAEFRKRFGCRIIADFKVA--DIPETNEKICRATFKAGAD-A--IIVHGFPGADSVRACLNVAEEMG--REVFLLTEMSH 128 (228)
T ss_dssp HHHHHHHHCCEEEEEEEEC--SCHHHHHHHHHHHHHTTCS-E--EEEESTTCHHHHHHHHHHHHHHT--CEEEEECCCCS
T ss_pred HHHHHhcCCCeEEEEEeec--ccHhHHHHHHHHHHhCCCC-E--EEEeccCCHHHHHHHHHHHHhcC--CCeEEEEeCCC
Confidence 344555 677776555544 7777666555566679996 4 35778888776655444443221 100 112222
Q ss_pred CC--C---CHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHH
Q 042073 114 SD--V---SIKEKIDTIARSYGASGVEYSEEAEKQIKMYTR 149 (225)
Q Consensus 114 ~~--~---~i~eKI~~IA~IYGA~~V~~s~~A~~~l~~~e~ 149 (225)
.+ + ++.+++-++|+-.|.++|+.|..--++++++.+
T Consensus 129 ~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~~~e~~~ir~ 169 (228)
T 3m47_A 129 PGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLRE 169 (228)
T ss_dssp GGGGTTHHHHHHHHHHHHHHTTCCEEECCSSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCcEEEECCCChHHHHHHHH
Confidence 11 1 333455555555688999988432234444444
No 301
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=33.41 E-value=75 Score=25.31 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhc-CCeEEEEecCCCCCc-HHHHHHHHHHHHHcCCC
Q 042073 32 NLARHIANTKAY-GVNVVVAVNMFATDS-EAELNAVRIAAMAAGAF 75 (225)
Q Consensus 32 NL~~HIeNi~~f-GvpvVVAIN~F~~DT-~~Ei~~i~~~c~~~g~~ 75 (225)
.+.+-++.++++ +.+..|.+|++...+ ... +.+.+++++.|.+
T Consensus 107 ~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~-~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 107 ALMLTIETLQKLGNNRFRILLTIIPPYPSKDG-DEARQLLTTAGLP 151 (209)
T ss_dssp HHHHHHHHHHHTCSSSEEEEECSBCCTTSCHH-HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCEEEEEEecCCccchHH-HHHHHHHHHcCCc
Confidence 344444444443 788999999998876 332 3455666667765
No 302
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=33.34 E-value=77 Score=28.71 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCeEE-EEec----------CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 34 ARHIANTKAYGVNVV-VAVN----------MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 34 ~~HIeNi~~fGvpvV-VAIN----------~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
+..++.|+..|+.+| +.|+ .|....-+-++.+.++|++.|+. +.+.-|...|+
T Consensus 76 e~D~~~ik~~G~N~VRipi~~~~~~~~~~~py~~~~~~~ld~vV~~a~~~Gl~-VILDlH~~pG~ 139 (399)
T 3n9k_A 76 EQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIR-VWIDLHGAPGS 139 (399)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCCCCHHHHHHHHHHHHHHTTCE-EEEEEEECTTC
T ss_pred HHHHHHHHHcCCCEEEEcccHHHccCCCCCccchhHHHHHHHHHHHHHHCCCE-EEEEecCCCcc
Confidence 566788899999987 4453 23333467899999999999996 88887766654
No 303
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=33.34 E-value=84 Score=26.16 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=36.4
Q ss_pred HHHHHHHhh-cCCeEE-EEecC------CCC-Cc---HHHHHHHHHHHHHcCCCeEEEccccccCch
Q 042073 34 ARHIANTKA-YGVNVV-VAVNM------FAT-DS---EAELNAVRIAAMAAGAFDAVVCSHHAHGGK 88 (225)
Q Consensus 34 ~~HIeNi~~-fGvpvV-VAIN~------F~~-DT---~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~ 88 (225)
++.|+.|++ .|+++| +.++- |.. |. -+-++.+.++|.+.|.. +.+.-|+..|++
T Consensus 41 ~~di~~~~~~~G~N~vRi~~~~~~~~~~~~~~~p~~~~~~ld~~v~~a~~~Gi~-vild~h~~~~~~ 106 (293)
T 1tvn_A 41 AETVAKAKTEFNATLIRAAIGHGTSTGGSLNFDWEGNMSRLDTVVNAAIAEDMY-VIIDFHSHEAHT 106 (293)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECCTTSTTSTTTCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSCGGG
T ss_pred HHHHHHHHHhcCCCEEEEeccccCCCCCccccChHHHHHHHHHHHHHHHHCCCE-EEEEcCCCCccc
Confidence 456777885 898888 44542 222 21 25567788999999996 888777765543
No 304
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=33.23 E-value=80 Score=27.81 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
+...+++-.++.|+.+++.+=-.+.-+++.+..+.+.+.+.|+..+.+++.
T Consensus 121 ~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT 171 (345)
T 1nvm_A 121 VSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADS 171 (345)
T ss_dssp GGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECT
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 566666666667776666653333444566666666666666654455544
No 305
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.19 E-value=71 Score=23.82 Aligned_cols=62 Identities=23% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 33 LARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+..-|..|+.-|.|.||-+|-- +...+...+..+++.|+. .-+-. ...-++|.+.|.+-+..
T Consensus 40 irdiiksmkdngkplvvfvnga---sqndvnefqneakkegvs-ydvlk-----stdpeeltqrvreflkt 101 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGA---SQNDVNEFQNEAKKEGVS-YDVLK-----STDPEELTQRVREFLKT 101 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSC---CHHHHHHHHHHHHHHTCE-EEEEE-----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCc---ccccHHHHHHHHHhcCcc-hhhhc-----cCCHHHHHHHHHHHHHh
Confidence 4455788999999999999965 455666677888888985 43321 23457899999887653
No 306
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=33.12 E-value=86 Score=24.02 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcHH--HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSEA--ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~~--Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+.++...++.+++ .+.|+++++|++.-.... ..+..+.++.+.++. +.- .=+.-|+|-.++-+.+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d--~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 93 YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIE--TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEE--CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEE--EeCCCCCCHHHHHHHHHHHHH
Confidence 3454444444433 579999999998653211 123356677777774 433 335567788887777766553
No 307
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=33.09 E-value=2.4e+02 Score=24.37 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=62.5
Q ss_pred ccHHHHHHhHHHHHHHHHHHhh-cCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 21 ENVALVEAGCVNLARHIANTKA-YGVNVV-VAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~-fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
+..-|| .|+.+|.+-|+..++ +++++. |.+|+.... .|+ .+.+++.|.. + +.. +-+-..|.
T Consensus 196 ~e~~Al-~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~--~~v---~~~a~~~~~~-~-lg~---------IP~d~~Vr 258 (314)
T 3fwy_A 196 NDFDSI-YAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEV---DRFCKETNFR-R-LAH---------MPDLDAIR 258 (314)
T ss_dssp SSHHHH-HHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHH---HHHHHHHTCC-E-EEE---------ECCCHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHHhccCCCceEEEEEcCCCch--hHH---HHHHHHhCCe-E-EEE---------ecCchHHH
Confidence 444454 477889888887765 777763 456775433 333 4667778886 4 222 22234555
Q ss_pred HHhhcCCCCcccccCCCCCHHH---HHHHHHh-Hh-ccCCCCCCHHHHHHHHHHHHCCCC
Q 042073 99 RACENVTQPLKFLYPSDVSIKE---KIDTIAR-SY-GASGVEYSEEAEKQIKMYTRQGFS 153 (225)
Q Consensus 99 ~~~e~~~~~f~~lY~~~~~i~e---KI~~IA~-IY-GA~~V~~s~~A~~~l~~~e~~G~~ 153 (225)
++...+ .-=+.|+.+.+... -.+.+|+ +. +-..+.-.|...++|.++ +||+
T Consensus 259 ~a~~~G--~pvv~~~P~S~~a~aa~~Y~~LA~eil~~~~~~~p~pl~d~el~~l--~g~~ 314 (314)
T 3fwy_A 259 RSRLKK--KTLFEMDEDQDVLAARAEYIRLAESLWRGLDPIDPHSLPDRDIFEL--LGFD 314 (314)
T ss_dssp HHHHTT--CCTTTSCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH--TTCC
T ss_pred HHHHcC--CceEEECCCChhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHh--hCCC
Confidence 554332 12245666544322 2678998 55 455666555555555543 5664
No 308
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=33.06 E-value=2.2e+02 Score=23.91 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHhhcCC-eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhh
Q 042073 28 AGCVNLARHIANTKAYGV-NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGA 90 (225)
Q Consensus 28 ~G~~NL~~HIeNi~~fGv-pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga 90 (225)
.|-+=|.+-++++++.|+ .+||+. |. + .+.+++.+.|+. +....--..+|.+.
T Consensus 41 ~GkPmi~~~l~~l~~~~i~~IvV~t-----~~-~---~i~~~~~~~g~~-v~~~~~~~~~Gt~~ 94 (264)
T 3k8d_A 41 NGKPMIVHVLERARESGAERIIVAT-----DH-E---DVARAVEAAGGE-VCMTRADHQSGTER 94 (264)
T ss_dssp TTEEHHHHHHHHHHHTTCSEEEEEE-----SC-H---HHHHHHHHTTCE-EEECCTTCCSHHHH
T ss_pred CCeEHHHHHHHHHHhCCCCEEEEEC-----CH-H---HHHHHHHHcCCE-EEEecCCCCCCHHH
Confidence 356667788888888776 456655 22 3 345677778986 66543333455554
No 309
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=33.05 E-value=1.9e+02 Score=24.34 Aligned_cols=117 Identities=6% Similarity=-0.008 Sum_probs=72.0
Q ss_pred HHHhhcCCeEEEEe-----------c----CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 38 ANTKAYGVNVVVAV-----------N----MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 38 eNi~~fGvpvVVAI-----------N----~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+-++++++|+|..- + ++..+...+...+.+++.+.|.+.+++-. ....-+.++++.+.+.++
T Consensus 91 ~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~---~~~~~g~~~~~~~~~~l~ 167 (387)
T 3i45_A 91 DFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIA---PNYEYGQSAVARFKELLL 167 (387)
T ss_dssp HHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEEC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEe---CCchHhHHHHHHHHHHHH
Confidence 44567899988742 1 24457778888999999999998777654 234455667777777665
Q ss_pred cCCCCc----ccccCCC-CCHHHHHHHHHhHhccCCCC---CCHHHHHHHHHHHHCCC-CCCCee
Q 042073 103 NVTQPL----KFLYPSD-VSIKEKIDTIARSYGASGVE---YSEEAEKQIKMYTRQGF-SGLPFC 158 (225)
Q Consensus 103 ~~~~~f----~~lY~~~-~~i~eKI~~IA~IYGA~~V~---~s~~A~~~l~~~e~~G~-~~lPVC 158 (225)
+....+ ...|+.. .+...-+.+|.. -+++-|. +...+..-++++.++|+ ++++|.
T Consensus 168 ~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~-~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 231 (387)
T 3i45_A 168 AARPEVTFVAEQWPALYKLDAGPTVQALQQ-AEPEGLFNVLFGADLPKFVREGRVRGLFAGRQVV 231 (387)
T ss_dssp HHCTTCEEEEEECCCTTCCCHHHHHHHHHH-TCCSEEEECCCTTHHHHHHHHHHHHTSSTTCEEE
T ss_pred HhCCCcEEEeeecCCCCCcCHHHHHHHHHh-CCCCEEEEcCccHHHHHHHHHHHHcCCCCCCeEE
Confidence 421122 2234433 455555555533 2333333 44567788899999997 356664
No 310
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=32.74 E-value=2.3e+02 Score=24.12 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=36.7
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhh--cCCeEEEEecCC------------------CCCcHHHHHHHHHHHHHcCCCe
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKA--YGVNVVVAVNMF------------------ATDSEAELNAVRIAAMAAGAFD 76 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~--fGvpvVVAIN~F------------------~~DT~~Ei~~i~~~c~~~g~~~ 76 (225)
+.-++|.+++.+-|..|.+-++..-. -+.++||.=..| ..=|.++|+.|.+.+++.+++
T Consensus 161 ~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~- 239 (291)
T 1pq4_A 161 DQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLT- 239 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEECCchHHHHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCC-
Confidence 44467888888888888887776432 234444432222 112455555555555555554
Q ss_pred EEEccc
Q 042073 77 AVVCSH 82 (225)
Q Consensus 77 ~avs~~ 82 (225)
+++.+.
T Consensus 240 ~If~e~ 245 (291)
T 1pq4_A 240 MVFGET 245 (291)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 544443
No 311
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=32.61 E-value=80 Score=30.21 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCe-EEEEecCCCCCc--HHH----HHHHHHHHHHcCC
Q 042073 31 VNLARHIANTKAYGVN-VVVAVNMFATDS--EAE----LNAVRIAAMAAGA 74 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvp-vVVAIN~F~~DT--~~E----i~~i~~~c~~~g~ 74 (225)
.....|+..++..|+| +||++|+...-. ++. .+.+.+++++.|.
T Consensus 291 ~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~ 341 (611)
T 3izq_1 291 GQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 341 (611)
T ss_dssp SHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcc
Confidence 5678899999999987 999999986533 333 3344555555564
No 312
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=32.59 E-value=70 Score=27.43 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 55 ATDSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 55 ~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
..+++++++.|.++|++.|+. +.+-++++
T Consensus 215 ~~~~~~~l~~l~~l~~~~~~~-li~De~~~ 243 (426)
T 1sff_A 215 YASSPAFMQRLRALCDEHGIM-LIADEVQS 243 (426)
T ss_dssp CBCCHHHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred ccCCHHHHHHHHHHHHHcCCE-EEEechhh
Confidence 347899999999999999996 87777776
No 313
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=32.44 E-value=1.1e+02 Score=25.30 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhh---cCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCC
Q 042073 29 GCVNLARHIANTKA---YGVNVV-VAVNMFATDSEAELNAVRIAAMAAGA 74 (225)
Q Consensus 29 G~~NL~~HIeNi~~---fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~ 74 (225)
|+..+.+.++.+++ .+++++ |.+|++...+...-+.+.++.+..|.
T Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 193 NIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 34444555555432 477855 88999998886555666777777664
No 314
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Probab=32.17 E-value=70 Score=27.16 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCeEE-EEec--CCCCC---------cHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 34 ARHIANTKAYGVNVV-VAVN--MFATD---------SEAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 34 ~~HIeNi~~fGvpvV-VAIN--~F~~D---------T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
++.++.|+..|+.+| +.|. +|..+ .-+.++.+.++|.++|+. +.+.-|...|+
T Consensus 31 ~~d~~~i~~~G~n~vRi~i~~~~~~~~~~~g~~~~~~~~~l~~~v~~a~~~Gi~-vildlh~~~g~ 95 (343)
T 1ceo_A 31 EKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLG-LVLDMHHAPGY 95 (343)
T ss_dssp HHHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCE-EEEEEEECCC-
T ss_pred HHHHHHHHHcCCCEEEecCCHHHhccccCCCcccHHHHHHHHHHHHHHHHCCCE-EEEEecCCCcc
Confidence 678899999999988 3333 33222 245678888999999996 88887776554
No 315
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=31.86 E-value=55 Score=29.43 Aligned_cols=66 Identities=24% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCcHHH--HHHHHHHH-HH----cCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 35 RHIANTKAYGVNVVVAVNMFATDSEAE--LNAVRIAA-MA----AGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~F~~DT~~E--i~~i~~~c-~~----~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
++++.+...|.|+||++|+..--.+.+ .+.+.+.+ +. .+++ +..+. ++-|+|-.+|-+.+.+.+++
T Consensus 277 ~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~S--A~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 277 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP-ILFMS--ALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC-EEECC--TTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC-EEEEe--cccCCCHHHHHHHHHHHHHH
Confidence 355556678999999999975322111 22222222 22 2555 44433 46678888888887777654
No 316
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=31.82 E-value=72 Score=26.87 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=33.6
Q ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHH
Q 042073 44 GVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGI 95 (225)
Q Consensus 44 GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~ 95 (225)
+.|+++++|+-.--++++++...++.++.|.. +.+| +.-|.|-.+|-+
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~-v~iS---a~~~~gi~~L~~ 93 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKR-VITT---HKGEPRKVLLKK 93 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC-EEEC---CTTSCHHHHHHH
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe-EEEE---CCCCcCHHHHHH
Confidence 89999999997655566777777777778886 5444 345666555443
No 317
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=31.72 E-value=61 Score=26.71 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhcCCeEE-EEecCCCCCc
Q 042073 30 CVNLARHIANTKAYGVNVV-VAVNMFATDS 58 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvV-VAIN~F~~DT 58 (225)
+......++.+++-|+++. |.+|+|..|.
T Consensus 154 i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~ 183 (228)
T 3of5_A 154 INHTLLTINELNRHNIKLAGWIANCNDSNI 183 (228)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEECcCCcc
Confidence 4445555666666777754 6678777663
No 318
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=31.72 E-value=1.9e+02 Score=23.84 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=35.1
Q ss_pred HHHHHHHh-hcCCeEE-EEecC-----CCCCc---HHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 34 ARHIANTK-AYGVNVV-VAVNM-----FATDS---EAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 34 ~~HIeNi~-~fGvpvV-VAIN~-----F~~DT---~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
++.++.|+ ..|+++| +.++- +..|. -+-++.+.++|.+.|.. +.+.-|...+.
T Consensus 41 ~~d~~~l~~~~G~N~vR~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-vild~h~~~~~ 103 (291)
T 1egz_A 41 ADTVASLKKDWKSSIVRAAMGVQESGGYLQDPAGNKAKVERVVDAAIANDMY-AIIGWHSHSAE 103 (291)
T ss_dssp HHHHHHHHHTTCCCEEEEEEECSSTTSTTTCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSCGG
T ss_pred HHHHHHHHHHcCCCEEEEeccccccCCCcCCHHHHHHHHHHHHHHHHHCCCE-EEEEcCCCCcc
Confidence 46778888 7999888 44441 22231 24566788899999996 77776655443
No 319
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=31.56 E-value=1.6e+02 Score=22.04 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCc-----HHHHHHHHHHHHHcCCCeEEEcccc------------ccC----ch
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFATDS-----EAELNAVRIAAMAAGAFDAVVCSHH------------AHG----GK 88 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~DT-----~~Ei~~i~~~c~~~g~~~~avs~~w------------a~G----G~ 88 (225)
..||.+=|+.+++-|.++|+.--..|.+. .+=-+.++++|++.|+. ++ +.| .+| .+
T Consensus 85 ~~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~-~i--D~~~~~~~~~~~~~~~Dg~Hpn~~ 161 (190)
T 1ivn_A 85 EQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP-LL--PFFMEEVYLKPQWMQDDGIHPNRD 161 (190)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCC-EE--CCTHHHHHTCGGGBCTTSSSBCGG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCe-EE--ccHHhhccCCchhhcCCCCCCCHH
Confidence 34666667777776776655421123221 22234578888888886 43 222 222 46
Q ss_pred hhHHHHHHHHHHhhc
Q 042073 89 GAVDLGIAVQRACEN 103 (225)
Q Consensus 89 Ga~~LA~~Vv~~~e~ 103 (225)
|...+|+.+.+.+.+
T Consensus 162 G~~~~a~~i~~~l~~ 176 (190)
T 1ivn_A 162 AQPFIADWMAKQLQP 176 (190)
T ss_dssp GHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888887753
No 320
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=31.24 E-value=84 Score=31.06 Aligned_cols=49 Identities=10% Similarity=-0.009 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhcCCeEEEE-e--c----------CCCCCcHHHHHHHHHHHHHcCCCeEEE
Q 042073 30 CVNLARHIANTKAYGVNVVVA-V--N----------MFATDSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVA-I--N----------~F~~DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
.+.+++.|+-|..|++++.-- + + .||..|.+|+..|.++|+++|+. ++.
T Consensus 143 ~~~ik~~id~ma~~KlN~~h~hl~Ddp~~~~~~wr~~yP~lt~~ei~elv~yA~~rgI~-vvp 204 (716)
T 2cho_A 143 HQARLSQLKFYGKNKMNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVD-FVW 204 (716)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTCTTTSTTGGGSCCCHHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEeeccCcccccccccccCChhhHHHHHHHHHHHHHcCCE-EEE
Confidence 456789999999999988652 1 0 13333788999999999999996 664
No 321
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=30.82 E-value=44 Score=27.13 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCeeEeecCCCcCCC------CCCCceEEeeEEEeecCCceeeeecc-cccccCCCC
Q 042073 132 SGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHN------APTGFILPIRDVRASIGAGFIYPLVG-TISTMLGLP 204 (225)
Q Consensus 132 ~~V~~s~~A~~~l~~~e~~G~~~lPVCmAKTqyS~Sdd------~P~~f~~~vrdv~~~~GAgFiv~~~G-~i~tMPGLp 204 (225)
..+.+.+++.+.|+++-+ | ..++.+ .|+|-++--.. ...-.||.+-.-| .+..|||-|
T Consensus 90 ~~l~~~~e~~~~i~~~~~-~------------~~~~~~~~k~A~~P~ga~~l~N~--~g~apG~~~~~~~~~v~~lPGvP 154 (172)
T 3kbq_A 90 QDLRIDEDALAMIKKKYG-Q------------ADLTPQRLKMAKIPPSCRPIENP--VGTAPGLICAVGGKKVIILPGVP 154 (172)
T ss_dssp CCCEECHHHHHHHHHHHC----------------CCHHHHGGGEECTTEEEECCS--SSSSCEEEEEETTEEEEEECSSH
T ss_pred CCeeeCHHHHHHHHHHHc-C------------CCCChHHHhhccCCCCCEECcCC--CCcCCeEEEEECCeEEEEeCCCH
Confidence 456777777777776533 1 112222 57774432221 1233578777544 688999998
Q ss_pred CC
Q 042073 205 TR 206 (225)
Q Consensus 205 k~ 206 (225)
+.
T Consensus 155 ~e 156 (172)
T 3kbq_A 155 KE 156 (172)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 322
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=30.82 E-value=1.6e+02 Score=21.75 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCC----CCcHHH-HHHHHHHHHHcCCC
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFA----TDSEAE-LNAVRIAAMAAGAF 75 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~----~DT~~E-i~~i~~~c~~~g~~ 75 (225)
.||.+-|+.+++-|.++|+.--..| .+..++ -+.++++|++.|+.
T Consensus 90 ~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~ 139 (185)
T 3hp4_A 90 TNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAH 139 (185)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCE
Confidence 4666667777776776655421122 222223 34567778888875
No 323
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=30.75 E-value=1.1e+02 Score=23.45 Aligned_cols=67 Identities=9% Similarity=-0.047 Sum_probs=33.1
Q ss_pred EecCC-CCCcH---H-HHHHHHHHH---HHcCC-CeEEEccccccCchhhHHHHHHHHHHhhcCCC--CcccccCCCCCH
Q 042073 50 AVNMF-ATDSE---A-ELNAVRIAA---MAAGA-FDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ--PLKFLYPSDVSI 118 (225)
Q Consensus 50 AIN~F-~~DT~---~-Ei~~i~~~c---~~~g~-~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~--~f~~lY~~~~~i 118 (225)
.||-| .+.+. . |+..+.+.. ++.|+ .-+++|. + ..+-.++. +++..- +|..++|.+.
T Consensus 35 vl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~---d----~~~~~~~~---~~~~~~~~~fp~l~D~~~-- 102 (167)
T 2wfc_A 35 VLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAV---N----DSFVMDAW---GKAHGADDKVQMLADPGG-- 102 (167)
T ss_dssp EEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEES---S----CHHHHHHH---HHHTTCTTTSEEEECTTS--
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeC---C----CHHHHHHH---HHhcCCCcceEEEECCCC--
Confidence 34444 45453 5 777766544 35677 5455553 2 12222222 222222 3777777553
Q ss_pred HHHHHHHHhHhccCC
Q 042073 119 KEKIDTIARSYGASG 133 (225)
Q Consensus 119 ~eKI~~IA~IYGA~~ 133 (225)
++++-||...
T Consensus 103 -----~~~~~~gv~~ 112 (167)
T 2wfc_A 103 -----AFTKAVDMEL 112 (167)
T ss_dssp -----HHHHHTTCEE
T ss_pred -----cHHHHcCCcc
Confidence 4556777543
No 324
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=30.67 E-value=53 Score=28.89 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCeEEEEecCCCC-----CcHH-HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHH
Q 042073 35 RHIANTKAYGVNVVVAVNMFAT-----DSEA-ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 96 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~F~~-----DT~~-Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~ 96 (225)
+=++.++++|..|++.=|.+.. -|++ -.+-+.++...-.++ +++| +.||.|+..|-..
T Consensus 34 ~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~~ 97 (327)
T 4h1h_A 34 IAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVK-AILT---VIGGFNSNQLLPY 97 (327)
T ss_dssp HHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEE-EEEE---SCCCSCGGGGGGG
T ss_pred HHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCC-EEEE---cCCchhHHHHhhh
Confidence 3355667799999998775432 3454 455566666666774 7666 5799999998764
No 325
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=30.30 E-value=1e+02 Score=24.45 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCeEEEEecCCCCCc---HH-HHHHHHHHH---HHcCCC-eEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCC
Q 042073 44 GVNVVVAVNMFATDS---EA-ELNAVRIAA---MAAGAF-DAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSD 115 (225)
Q Consensus 44 GvpvVVAIN~F~~DT---~~-Ei~~i~~~c---~~~g~~-~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~ 115 (225)
|-+ ||.++-+.+.+ .. |+..+.+.. ++.|+. -+++|. + ..+-.++..+...- +..|..++|.+
T Consensus 56 Gk~-vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~---d----~~~~~~~f~~~~~~-~~~fp~l~D~~ 126 (184)
T 3uma_A 56 GKR-VVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAV---N----DLHVMGAWATHSGG-MGKIHFLSDWN 126 (184)
T ss_dssp TSE-EEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEES---S----CHHHHHHHHHHHTC-TTTSEEEECTT
T ss_pred CCC-EEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEEC---C----CHHHHHHHHHHhCC-CCceEEEEcCc
Confidence 444 44455445555 34 677676655 346775 455653 1 12222333332211 11388888875
Q ss_pred CCHHHHHHHHHhHhccC
Q 042073 116 VSIKEKIDTIARSYGAS 132 (225)
Q Consensus 116 ~~i~eKI~~IA~IYGA~ 132 (225)
. ++++-||..
T Consensus 127 ~-------~va~~yGv~ 136 (184)
T 3uma_A 127 A-------AFTKAIGME 136 (184)
T ss_dssp C-------HHHHHTTCE
T ss_pred h-------HHHHHcCCc
Confidence 3 456677743
No 326
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=30.18 E-value=1.4e+02 Score=25.64 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=84.3
Q ss_pred cccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHH
Q 042073 20 NENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 99 (225)
Q Consensus 20 ~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~ 99 (225)
+.+++.+...=... |+.+++.|.+++.=+-+ .|-..=.+.-.+.+.++|+. +. ++.+-||...++-|.+..+
T Consensus 35 KvG~~l~~~~G~~~---v~~Lk~~g~~VflDlK~--~DIpnTv~~a~~~~~~~gad-~v--TVh~~~G~~~~~aa~~~~~ 106 (259)
T 3tfx_A 35 KVGMELFYNAGIDV---IKKLTQQGYKIFLDLKM--HDIPNTVYNGAKALAKLGIT-FT--TVHALGGSQMIKSAKDGLI 106 (259)
T ss_dssp EECHHHHHHHCHHH---HHHHHHTTCEEEEEEEE--CSCHHHHHHHHHHHHTTTCS-EE--EEEGGGCHHHHHHHHHHHH
T ss_pred EeCHHHHHhcCHHH---HHHHHHCCCcEEEEecc--cccchHHHHHHHHHHhcCCC-EE--EEcCCCCHHHHHHHHHHHH
Confidence 34555554322233 34455568888777765 46665544444566778996 43 5777888887776666554
Q ss_pred Hhh-cC------------CC----CcccccCCCCCHHHHHHHHHh-H--hccCCCCCCHHHHHHHHHHHHCCCCCCCeeE
Q 042073 100 ACE-NV------------TQ----PLKFLYPSDVSIKEKIDTIAR-S--YGASGVEYSEEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 100 ~~e-~~------------~~----~f~~lY~~~~~i~eKI~~IA~-I--YGA~~V~~s~~A~~~l~~~e~~G~~~lPVCm 159 (225)
... .. +| .|+--.-.+.++.+.+..+|+ . .|.++|+-|+.-.+.|++.-..+| +++
T Consensus 107 ~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G~dGvV~s~~e~~~ir~~~~~~f----~~v 182 (259)
T 3tfx_A 107 AGTPAGHSVPKLLAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSPLEVKKLHENIGDDF----LYV 182 (259)
T ss_dssp HHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTTCCEEECCGGGHHHHHHHHCSSS----EEE
T ss_pred HhcccCCCCceEEEEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEECHHHHHHHHhhcCCcc----EEE
Confidence 210 00 01 011001123588998888888 4 478999999865566665433333 333
Q ss_pred e---ecCCCcCCCCCCCceEEeeEEEeecCCceeee
Q 042073 160 A---KTQHSFSHNAPTGFILPIRDVRASIGAGFIYP 192 (225)
Q Consensus 160 A---KTqyS~Sdd~P~~f~~~vrdv~~~~GAgFiv~ 192 (225)
. .-|-+=.+| .--+.++.++ +.+||-++|+
T Consensus 183 tPGIr~~g~~~gD--Q~Rv~T~~~a-~~aGad~iVv 215 (259)
T 3tfx_A 183 TPGIRPAGNAKDD--QSRVATPKMA-KEWGSSAIVV 215 (259)
T ss_dssp ECCCCCC-------------CHHHH-HHTTCSEEEE
T ss_pred cCCcCCCCCCcCC--ccccCCHHHH-HHcCCCEEEE
Confidence 1 112111122 0012344444 4789988886
No 327
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=30.12 E-value=62 Score=28.08 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 56 TDSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 56 ~DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
..++++++.|.++|++.|+. +++-+++.
T Consensus 208 ~~~~~~l~~l~~l~~~~~~~-li~DEv~~ 235 (430)
T 3i4j_A 208 APAPGYYERVRDICDEAGII-FIADEVMS 235 (430)
T ss_dssp CCCTTHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred cCCHHHHHHHHHHHHHcCCE-EEEechhh
Confidence 56889999999999999995 77766655
No 328
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=29.86 E-value=75 Score=29.97 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCCeEEE-----------EecCCCC-----------------CcHHHHHHHHHHHHHcCCCeEEE
Q 042073 30 CVNLARHIANTKAYGVNVVV-----------AVNMFAT-----------------DSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVV-----------AIN~F~~-----------------DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
.+.|++.|+-|..|++++.- -|-.||. =|.+|+..|.++|+++|+. ++.
T Consensus 173 ~~~ik~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~-VIP 249 (512)
T 1jak_A 173 VDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLE-VVP 249 (512)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEE
Confidence 46789999999999999884 3334441 2899999999999999996 654
No 329
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=29.84 E-value=1.1e+02 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=7.1
Q ss_pred HHHHHHHHhhcCCeEEE
Q 042073 33 LARHIANTKAYGVNVVV 49 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVV 49 (225)
+.++++-.+++|+||++
T Consensus 116 f~~~~~~a~~~~~Pv~i 132 (259)
T 1zzm_A 116 LDEQLKLAKRYDLPVIL 132 (259)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 33444444444444443
No 330
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=29.63 E-value=92 Score=28.09 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhh----cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC-----eEEEccccccCchhhHHHHHHHHHH
Q 042073 30 CVNLARHIANTKA----YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF-----DAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 30 ~~NL~~HIeNi~~----fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~-----~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
+.++...+..+.+ .++|+||++|+..-......+.+.+ +.+.. .+.+-..=++=|+|-.+|-+.+++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 481 (497)
T 3lvq_E 405 IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE---KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 481 (497)
T ss_dssp HHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHH---HTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHH---HhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5555555555533 4899999999976532211222222 23321 1223334467789999999999998
Q ss_pred hhc
Q 042073 101 CEN 103 (225)
Q Consensus 101 ~e~ 103 (225)
+++
T Consensus 482 ~~~ 484 (497)
T 3lvq_E 482 YKS 484 (497)
T ss_dssp CC-
T ss_pred HHh
Confidence 864
No 331
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=29.52 E-value=80 Score=27.71 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=35.1
Q ss_pred ccHHHHHHhHHHHHHHHHHHhhcCCeE-----EEEecCCCCCcHHHHHHHHHHHHHcCC
Q 042073 21 ENVALVEAGCVNLARHIANTKAYGVNV-----VVAVNMFATDSEAELNAVRIAAMAAGA 74 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~fGvpv-----VVAIN~F~~DT~~Ei~~i~~~c~~~g~ 74 (225)
-++.+..+|+..|.+-++.++++|.++ |..+|.+... ...-+.+.+.++..|.
T Consensus 279 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~-~~~~~~~~~l~~~~g~ 336 (398)
T 3ez2_A 279 VDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK-ADHKYCHSLAKEVFGG 336 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC-HHHHHHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc-hhHHHHHHHHHHHhcc
Confidence 456678899999999999999887553 5567777543 2222334444555565
No 332
>1tvl_A Protein YTNJ; beta-alpha barrel, structural genomics, PSI, protein structu initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.1.16.4 PDB: 1yw1_A*
Probab=29.51 E-value=1.5e+02 Score=27.14 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=45.7
Q ss_pred CcHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 042073 57 DSEAEL-NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKI 122 (225)
Q Consensus 57 DT~~Ei-~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI 122 (225)
-|++|+ +.|.+|.++.|+..+.+...+ -+.-..+|+.|+-.+.. ..-|+.-|. ..+|++++
T Consensus 367 GTpe~Vad~L~~~~~~~g~D~f~l~~~~---~~~le~fa~~VvP~L~~-rg~~r~~y~-~~tlR~~l 428 (454)
T 1tvl_A 367 GTPERVASLIETWFNAEAADGFIVGSDI---PGTLDAFVEKVIPILQE-RGLYRQDYR-GGTLRENL 428 (454)
T ss_dssp ECHHHHHHHHHHHHHTTSCSEEEECCCS---TTHHHHHHHHHHHHHHH-TTSSCSSCS-CSSHHHHH
T ss_pred ECHHHHHHHHHHHHHhcCCCEEEEcCCC---hHHHHHHHHHHHHHHhh-cCCcCCCCC-CcCHHHHc
Confidence 356665 457888888899877776554 46677799999999875 345898997 45999998
No 333
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=29.50 E-value=1.2e+02 Score=26.69 Aligned_cols=136 Identities=9% Similarity=0.067 Sum_probs=79.3
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEec-C----CC--CCcH-------HHHHHHHHHHHHc--CCCeEEEc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVN-M----FA--TDSE-------AELNAVRIAAMAA--GAFDAVVC 80 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN-~----F~--~DT~-------~Ei~~i~~~c~~~--g~~~~avs 80 (225)
.+..+|-+--++.+..+++.|+..+.+|.+.||.-= + ++ .|.+ +-++.+.+.+++. |+. +++-
T Consensus 102 ~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~a~~~g~gv~-l~lE 180 (387)
T 1bxb_A 102 AFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYR-FALE 180 (387)
T ss_dssp STTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCE-EEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCccCCccCCHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEe
Confidence 456677777889999999999999999999987521 0 11 2333 3345555666777 786 7777
Q ss_pred cccccC--ch--hhHHHHHHHHHHhhcCCCC-cccccC------CCCCHHHHHHHHH--h-Hhc--cCCC---CC-----
Q 042073 81 SHHAHG--GK--GAVDLGIAVQRACENVTQP-LKFLYP------SDVSIKEKIDTIA--R-SYG--ASGV---EY----- 136 (225)
Q Consensus 81 ~~wa~G--G~--Ga~~LA~~Vv~~~e~~~~~-f~~lY~------~~~~i~eKI~~IA--~-IYG--A~~V---~~----- 136 (225)
++...- +. ...+-+..+++.+. ..+ +..++| ...++.+.|++.. . |.. .++. .|
T Consensus 181 ~~~~~~~~~~~~~t~~~~~~ll~~v~--~~~~vgl~lD~gH~~~~g~d~~~~l~~~~~~~~i~~vHl~D~~~~~~d~~l~ 258 (387)
T 1bxb_A 181 PKPNEPRGDIYFATVGSMLAFIHTLD--RPERFGLNPEFAHETMAGLNFVHAVAQALDAGKLFHIDLNDQRMSRFDQDLR 258 (387)
T ss_dssp CCSSSSSSEESSCSHHHHHHHHTTSS--SGGGEEECCBHHHHHHTTCCHHHHHHHHHHTTCBCCEECCBCCSSSSCCCBC
T ss_pred cCCCCCCCCccCCCHHHHHHHHHHcC--CccceEEEEecCcccccCCCHHHHHHHhccCCcEEEEEeCCCCCCCCcCCCC
Confidence 664221 11 12222233444332 223 555554 3567888888887 4 432 2211 11
Q ss_pred ----C-HHHHHHHHHHHHCCCCCC
Q 042073 137 ----S-EEAEKQIKMYTRQGFSGL 155 (225)
Q Consensus 137 ----s-~~A~~~l~~~e~~G~~~l 155 (225)
. +....-++.+++.||+..
T Consensus 259 ~G~~d~~~~~~i~~~L~~~Gy~G~ 282 (387)
T 1bxb_A 259 FGSENLKAAFFLVDLLESSGYQGP 282 (387)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCCSC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCC
Confidence 1 134555778888888643
No 334
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=29.48 E-value=27 Score=29.53 Aligned_cols=48 Identities=4% Similarity=-0.047 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEE
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
+..+.+-|+.+++.| ++.+-..-.+.-++ |++.+.+++++.|+..+.+
T Consensus 202 ~~~v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~~~~i~l 249 (311)
T 2z2u_A 202 WESILNTLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERADVHFIEL 249 (311)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHcCCCEEEE
Confidence 566666667777778 77665554554344 7888888988888864433
No 335
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=29.20 E-value=2.1e+02 Score=24.17 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=22.2
Q ss_pred HHHHHhhc-CCeEEEEecCCCCCcHHHHHHHHHHHHHcCC
Q 042073 36 HIANTKAY-GVNVVVAVNMFATDSEAELNAVRIAAMAAGA 74 (225)
Q Consensus 36 HIeNi~~f-GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~ 74 (225)
+++..+.+ +.|++|-|. ..+.++.....+.+.+.|+
T Consensus 84 ~~~~~~~~~~~p~~~~i~---g~~~~~~~~~a~~~~~~g~ 120 (314)
T 2e6f_A 84 YASDLHDYSKKPLFLSIS---GLSVEENVAMVRRLAPVAQ 120 (314)
T ss_dssp HHHHTCCTTTCCEEEEEC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcEEEEeC---CCCHHHHHHHHHHHHHhCC
Confidence 34433344 788888775 3456666666666666665
No 336
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=29.15 E-value=1.3e+02 Score=25.50 Aligned_cols=139 Identities=10% Similarity=-0.014 Sum_probs=76.1
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecC-----C--CCCcHHHHHHH----HHHHHHc-CCCeEEEccc-c
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNM-----F--ATDSEAELNAV----RIAAMAA-GAFDAVVCSH-H 83 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~-----F--~~DT~~Ei~~i----~~~c~~~-g~~~~avs~~-w 83 (225)
.+..+|.+--++.+..+++.|+..+.+|.|.||.-=- + ..|.++.++.+ .+.|..+ ++. +.+..+ +
T Consensus 93 ~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vv~~~g~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~-i~lE~~p~ 171 (333)
T 3ktc_A 93 AFTNPDPAARAAAFELMHESAGIVRELGANYVKVWPGQDGWDYPFQVSHKNLWKLAVDGMRDLAGANPDVK-FAIEYKPR 171 (333)
T ss_dssp STTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSSCHHHHHHHHHHHHHHHHHTCTTSE-EEEECCSC
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCcCCCCcCCHHHHHHHHHHHHHHHHHHhhcCC-EEEEEecC
Confidence 3556888888999999999999999999999975211 1 23455555544 3334422 443 555422 2
Q ss_pred ccCc---hhhHHHHHHHHHHhhcCCCCcccccC------CCCCHHHHHHHH--Hh-Hh--ccCCCCC-----------C-
Q 042073 84 AHGG---KGAVDLGIAVQRACENVTQPLKFLYP------SDVSIKEKIDTI--AR-SY--GASGVEY-----------S- 137 (225)
Q Consensus 84 a~GG---~Ga~~LA~~Vv~~~e~~~~~f~~lY~------~~~~i~eKI~~I--A~-IY--GA~~V~~-----------s- 137 (225)
.... -...+-+..+++.+. +.++..++| ...++.+-++.+ .. |. ..++... .
T Consensus 172 ~~~~~~~~~~~~~~~~ll~~v~--~~~vgl~lD~~H~~~~g~~~~~~~~~~~~~~~i~~vH~~D~~~~~d~~~~~G~G~~ 249 (333)
T 3ktc_A 172 EPRVKMTWDSAARTLLGIEDIG--LDNVGVLLDFGHALYGGESPADSAQLIIDRGRLFGMDVNDNLRGWDDDLVVGTVHM 249 (333)
T ss_dssp SSSSEESSCSHHHHHHHHHHHT--CTTEEEEEEHHHHHHTTCCHHHHHHHHHHTTCEEEEEBCBCCSSSCCCBCTTSSCH
T ss_pred CCCccccCCCHHHHHHHHHHcC--CcceEEEEecCcHhhhcCCHHHHHHHHHhCCCEEEEEeCCCCCCCCCCcCCCCCCH
Confidence 1111 112233334555553 234666654 244555555543 12 31 2222221 1
Q ss_pred HHHHHHHHHHHHCCCCCCCeeE
Q 042073 138 EEAEKQIKMYTRQGFSGLPFCM 159 (225)
Q Consensus 138 ~~A~~~l~~~e~~G~~~lPVCm 159 (225)
-....-++.+++.||+ =++++
T Consensus 250 ~d~~~i~~~L~~~gy~-G~i~l 270 (333)
T 3ktc_A 250 TEIFEFFYVLKINNWQ-GVWQL 270 (333)
T ss_dssp HHHHHHHHHHHHTTCC-CCEEE
T ss_pred HHHHHHHHHHHHcCCC-ceEEE
Confidence 2567778888888986 34444
No 337
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=28.86 E-value=43 Score=31.60 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhcCCeEEE-----------EecCCCC------------CcHHHHHHHHHHHHHcCCCeEEE
Q 042073 30 CVNLARHIANTKAYGVNVVV-----------AVNMFAT------------DSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVV-----------AIN~F~~------------DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
.+.|++.|+-|..|++++.- -|..||. =|.+|+..|.++|+++|+. ++.
T Consensus 167 ~~~ik~~id~ma~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~-VIP 238 (507)
T 1now_A 167 VKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIR-VLP 238 (507)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHHHHHhCCcEEEEeeccCccceeeccchhhhhcccCcCCCCCCCHHHHHHHHHHHHHcCCE-EEE
Confidence 45688999999999998874 2223331 1899999999999999996 654
No 338
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=28.56 E-value=60 Score=24.83 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhcCC-eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccC
Q 042073 29 GCVNLARHIANTKAYGV-NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHG 86 (225)
Q Consensus 29 G~~NL~~HIeNi~~fGv-pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~G 86 (225)
|-+=|++-++++++.|+ .++|+.+.- .++ +.+++.+.|+. +.....|..|
T Consensus 30 g~pll~~~l~~l~~~~~~~i~vv~~~~----~~~---~~~~~~~~~~~-~~~~~~~~~g 80 (197)
T 2wee_A 30 DTTVLGATLDVARQAGFDQLILTLGGA----ASA---VRAAMALDGTD-VVVVEDVERG 80 (197)
T ss_dssp TEEHHHHHHHHHHHTTCSEEEEEECTT----HHH---HHHHSCCTTSE-EEECC----C
T ss_pred CccHHHHHHHHHHhcCCCcEEEEeCCC----HHH---HHHHhccCCCE-EEECCCcccC
Confidence 66778888999998885 667766542 233 45666666775 6555555544
No 339
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=28.47 E-value=49 Score=23.55 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=30.7
Q ss_pred HHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEcccccc
Q 042073 38 ANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAH 85 (225)
Q Consensus 38 eNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~ 85 (225)
.||+.|| .|.++.+.+-..+=-+.|.+.+.+.|+.-+.+...|..
T Consensus 15 ~~lq~~g---tVsvsg~~~sp~D~~~~lskkAdekGA~~y~Ii~~~~~ 59 (72)
T 4evu_A 15 AMMVPFD---SVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQWQE 59 (72)
T ss_dssp TTSCCSE---EEEEEECCSSHHHHHHHHHHHHHHTTCSEEEEEEEEEC
T ss_pred hhCeecc---EEEECCccCChHHHHHHHHHHHHHcCCCEEEEEEeecC
Confidence 4788898 45555443433333457778889999988888878743
No 340
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=28.33 E-value=48 Score=31.31 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHH
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAA 69 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c 69 (225)
.+...+++.+++.+.|+++++|+-..-+++|+..+.+..
T Consensus 205 ~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 205 DEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 456777888888999999999998776778877665543
No 341
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=28.23 E-value=2e+02 Score=22.69 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhhcC--CeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEcc-ccccCchhhHHHHHHHHHHh
Q 042073 29 GCVNLARHIANTKAYG--VNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCS-HHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 29 G~~NL~~HIeNi~~fG--vpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~-~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
|-+=|++-++++++.+ -.+||+.+ + ++ +.+++++.|+. +.... .+..||.|..+-....++.+
T Consensus 28 gkpll~~~l~~~~~~~~~~~ivvv~~----~--~~---i~~~~~~~~~~-~~~~~~~~~~~~~g~~~sv~~~l~~~ 93 (228)
T 1ezi_A 28 GISLLGHTINAAISSKCFDRIIVSTD----G--GL---IAEEAKNFGVE-VVLRPAELASDTASSISGVIHALETI 93 (228)
T ss_dssp TEEHHHHHHHHHHHHCCCSEEEEEES----C--HH---HHHHHHHTTCE-EEECCC------CHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhCCCCCEEEEECC----C--HH---HHHHHHHcCCE-EEeCchHHcCCCCChHHHHHHHHHHh
Confidence 6667788899998877 36777764 1 33 35666778885 54332 35557776554434444444
No 342
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=28.22 E-value=16 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.2
Q ss_pred HHHHHHHh--HhccCCCCCCHHHHHHHHHH
Q 042073 120 EKIDTIAR--SYGASGVEYSEEAEKQIKMY 147 (225)
Q Consensus 120 eKI~~IA~--IYGA~~V~~s~~A~~~l~~~ 147 (225)
||+.-+.+ +-+|+.++..++|++.|+.+
T Consensus 2 ekvq~~trsairras~ie~~~qarqnlqel 31 (52)
T 1fjk_A 2 DKVQYLTRSAIRRASTIEMPQQARQNLQNL 31 (52)
T ss_dssp CSHHHHHHHHHHHHHSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 57777777 88999999999999998875
No 343
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}
Probab=28.17 E-value=1.6e+02 Score=24.79 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=62.6
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh--cCC---------
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE--NVT--------- 105 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e--~~~--------- 105 (225)
|+.+++.|.+++.=+-+ .|-..-.+...+.+.++|+. + .++++-||...++=|.+..+... ..+
T Consensus 52 v~~L~~~g~~iflDlK~--~DI~nTv~~~~~~~~~~gad-~--vTvh~~~G~~~~~~a~~~~~~~~~~~~~~l~~Vt~LT 126 (239)
T 3tr2_A 52 VEELMQKGYRIFLDLKF--YDIPQTVAGACRAVAELGVW-M--MNIHISGGRTMMETVVNALQSITLKEKPLLIGVTILT 126 (239)
T ss_dssp HHHHHHTTCCEEEEEEE--CSCHHHHHHHHHHHHHTTCS-E--EEEEGGGCHHHHHHHHHHHHTCCCSSCCEEEEECSCT
T ss_pred HHHHHhcCCCEEEEecc--cccchHHHHHHHHHHhCCCC-E--EEEeccCCHHHHHHHHHHHHhcCcCCCceEEEEEEEe
Confidence 45556678887766655 45565555445567789996 4 36778888887776666553210 000
Q ss_pred --C--CcccccCCCCCHHHHHHHHHh-H--hccCCCCCCHHHHHHH
Q 042073 106 --Q--PLKFLYPSDVSIKEKIDTIAR-S--YGASGVEYSEEAEKQI 144 (225)
Q Consensus 106 --~--~f~~lY~~~~~i~eKI~~IA~-I--YGA~~V~~s~~A~~~l 144 (225)
+ .++- .-.+.++.+.+..+|+ . .|.++|+.|+.=-+.|
T Consensus 127 S~~~~~l~~-~g~~~~~~~~v~~~A~~a~~~g~~GvV~s~~e~~~i 171 (239)
T 3tr2_A 127 SLDGSDLKT-LGIQEKVPDIVCRMATLAKSAGLDGVVCSAQEAALL 171 (239)
T ss_dssp TCCHHHHHH-TTCCSCHHHHHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred eCCHHHHHh-cCCCCCHHHHHHHHHHHHHHcCCCEEEECchhHHHH
Confidence 0 1211 1123688899999988 4 3789999998644434
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.95 E-value=73 Score=24.65 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.6
Q ss_pred hcCCeEEEEecCCCCC
Q 042073 42 AYGVNVVVAVNMFATD 57 (225)
Q Consensus 42 ~fGvpvVVAIN~F~~D 57 (225)
.-++|+++++|+-.--
T Consensus 118 ~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 118 ENGIDILIACNKSELF 133 (218)
T ss_dssp TTCCCEEEEEECTTST
T ss_pred cCCCCEEEEEEchHhc
Confidence 3589999999997543
No 345
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=27.91 E-value=1.4e+02 Score=23.96 Aligned_cols=85 Identities=18% Similarity=0.107 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCccc
Q 042073 32 NLARHIANTKAYGVNVV-VAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKF 110 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~ 110 (225)
.+.+-++.+++.|++.+ |.+|++...+.. ..+.+.++..|.+ +. ...-.+ ..++ ++.... .. -+
T Consensus 149 ~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~-~~-~~Ip~~-----~~~~----~a~~~g-~~-v~ 213 (263)
T 1hyq_A 149 DGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEIEAILEAK-VI-GLIPED-----PEVR----RAAAYG-KP-VV 213 (263)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHHHHTTSC-EE-EEEECC-----HHHH----HHHHHT-SC-HH
T ss_pred HHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHHHHHhCCC-eE-EECCCC-----HHHH----HHHHcC-Cc-eE
Confidence 33444444555576654 889999887665 4556666677875 32 222111 2333 333322 11 12
Q ss_pred ccCCCCCHHHHHHHHHh-Hhcc
Q 042073 111 LYPSDVSIKEKIDTIAR-SYGA 131 (225)
Q Consensus 111 lY~~~~~i~eKI~~IA~-IYGA 131 (225)
.|..+.+...-++.+|+ +.+.
T Consensus 214 ~~~~~~~~~~~~~~la~~l~~~ 235 (263)
T 1hyq_A 214 LRSPNSPAARAIVELANYIAGG 235 (263)
T ss_dssp HHCTTSHHHHHHHHHHHHHC--
T ss_pred EcCCCCHHHHHHHHHHHHHHhh
Confidence 34555678888999999 8664
No 346
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=27.80 E-value=1.4e+02 Score=21.83 Aligned_cols=42 Identities=7% Similarity=0.009 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCeEEEEecCCCCC--------cHHHHHHHHHHHHHcCCC
Q 042073 34 ARHIANTKAYGVNVVVAVNMFATD--------SEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~F~~D--------T~~Ei~~i~~~c~~~g~~ 75 (225)
..-++.+++-|+++++|=+|-... +.+.++.+.+++++.++.
T Consensus 30 ~~~l~~l~~~Gi~~~iaTGR~~~~~nG~~~~~~~~~~~~i~~~~~~~~~~ 79 (126)
T 1xpj_A 30 IEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVP 79 (126)
T ss_dssp HHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCeEEEEeCCChhhccccccccCHHHHHHHHHHHHHcCCC
Confidence 344566777799999999986443 233456677777777764
No 347
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=27.71 E-value=1.8e+02 Score=24.30 Aligned_cols=53 Identities=13% Similarity=0.300 Sum_probs=36.0
Q ss_pred HHHHHHHh-hcCCeEE-EEecC----CCCCcH---HHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 34 ARHIANTK-AYGVNVV-VAVNM----FATDSE---AELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 34 ~~HIeNi~-~fGvpvV-VAIN~----F~~DT~---~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
++.++.|+ ..|+++| +.++- +..|.+ +-++.+.++|.+.|.. +.+.-|...+|
T Consensus 45 ~~d~~~l~~~~G~N~vRi~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gl~-vild~h~~~~g 106 (306)
T 2cks_A 45 DSSLDALAYDWKADIIRLSMYIQEDGYETNPRGFTDRMHQLIDMATARGLY-VIVDWHILTPG 106 (306)
T ss_dssp HHHHHHHHHTSCCSEEEEEEESSTTSGGGCHHHHHHHHHHHHHHHHTTTCE-EEEEEECCSSC
T ss_pred HHHHHHHHHHcCCCEEEEEeeecCCCcccCHHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCC
Confidence 35677775 5899888 44541 233433 5677888999999996 87777766444
No 348
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=27.67 E-value=62 Score=28.26 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=38.1
Q ss_pred cCCeEEEEecCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 43 YGVNVVVAVNMFATDSEAELNAVRIAAMAA-----------GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~-----------g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
+..|++|++|+..-+...+.+...+..++. +.+ +.. .=+.=|+|-.+|-+.+.+.+.
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-vi~--iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPP-VLT--MSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCC-EEE--EBGGGTBSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCc-eEE--EEcCCCCCHHHHHHHHHHHHH
Confidence 346999999998877666655444443322 344 333 334668899999998888765
No 349
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=27.64 E-value=98 Score=26.42 Aligned_cols=32 Identities=16% Similarity=-0.018 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCCCcHHHHH----HHHHHHHHcCCC
Q 042073 44 GVNVVVAVNMFATDSEAELN----AVRIAAMAAGAF 75 (225)
Q Consensus 44 GvpvVVAIN~F~~DT~~Ei~----~i~~~c~~~g~~ 75 (225)
.+|+++.+|+....|++|+. .+.+++++.|+.
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~ 190 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIK 190 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 68999999999888888764 567888888885
No 350
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=27.59 E-value=1.2e+02 Score=26.75 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=65.0
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEe-cC------CCCCcHHH-------HHHHHHHHHHc--CCCeEEEc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKAYGVNVVVAV-NM------FATDSEAE-------LNAVRIAAMAA--GAFDAVVC 80 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAI-N~------F~~DT~~E-------i~~i~~~c~~~--g~~~~avs 80 (225)
.+..+|-+-.++.+..+++.|+..+.+|.+.||.- -+ ...|.++. ++.+.+.+++. |+. +++-
T Consensus 102 ~l~spd~~~r~~~i~~~~~~i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~g~gv~-l~lE 180 (393)
T 1xim_A 102 GFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLR-FAIE 180 (393)
T ss_dssp STTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCcCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEe
Confidence 45667777788999999999999999999999863 11 12344444 34445556666 886 7776
Q ss_pred cccccC--ch--hhHHHHHHHHHHhhcCCCC-cccccC------CCCCHHHHHHHHH
Q 042073 81 SHHAHG--GK--GAVDLGIAVQRACENVTQP-LKFLYP------SDVSIKEKIDTIA 126 (225)
Q Consensus 81 ~~wa~G--G~--Ga~~LA~~Vv~~~e~~~~~-f~~lY~------~~~~i~eKI~~IA 126 (225)
++...- +. ...+-+..+++.+. ..+ +..++| ...++.+.|++..
T Consensus 181 ~~~~~~~~~~~~~t~~~~~~ll~~v~--~~~~vgl~lD~gH~~~~g~d~~~~l~~~~ 235 (393)
T 1xim_A 181 PKPNEPRGDILLPTAGHAIAFVQELE--RPELFGINPETGHEQMSNLNFTQGIAQAL 235 (393)
T ss_dssp CCSSSSSSEESSCSHHHHHHHHTTSS--SGGGEEECCBHHHHHTTTCCHHHHHHHHH
T ss_pred cCCCCCCCCCcCCCHHHHHHHHHHhC--CccceEEEEccCCccccCCCHHHHHHHhh
Confidence 663211 11 12222333333332 223 555543 3457888888886
No 351
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=27.43 E-value=76 Score=24.21 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhhcCC-eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHH
Q 042073 29 GCVNLARHIANTKAYGV-NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLG 94 (225)
Q Consensus 29 G~~NL~~HIeNi~~fGv-pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA 94 (225)
|-+=|++-++++++.|+ ++||+.+.- .+ .+.+++.+.|+. +.....+..|=.+++..|
T Consensus 30 g~pli~~~l~~l~~~~~~~i~vv~~~~----~~---~~~~~~~~~~~~-~~~~~~~~~g~~~~i~~a 88 (199)
T 2waw_A 30 DTTLLGATLAMARRCPFDQLIVTLGGA----AD---EVLEKVELDGLD-IVLVDDAGLGCSSSLKSA 88 (199)
T ss_dssp TEEHHHHHHHHHHTSSCSEEEEEECTT----HH---HHHHHSCCTTSE-EEECCCCCTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHhCCCCcEEEEeCCC----HH---HHHHHhccCCCE-EEECCCcccCHHHHHHHH
Confidence 56778888999999875 677776632 22 345666666885 666555655544444433
No 352
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=27.23 E-value=57 Score=31.05 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCe-EEEEecCCCCC--cHHHHHH----HHHHH-HHcCC
Q 042073 31 VNLARHIANTKAYGVN-VVVAVNMFATD--SEAELNA----VRIAA-MAAGA 74 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvp-vVVAIN~F~~D--T~~Ei~~----i~~~c-~~~g~ 74 (225)
.....|+..++..|+| +||++|+-..- +++.++. +.+++ +..|.
T Consensus 301 ~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~ 352 (592)
T 3mca_A 301 GQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF 352 (592)
T ss_dssp SSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCC
Confidence 3456788889999998 99999996542 2444443 44444 44565
No 353
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=27.12 E-value=2.4e+02 Score=22.66 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=38.1
Q ss_pred HHHhhcCCeE--EEE-----ecCCCCCcH------HHHHHHHHHHHHcCCCeEEEccccccCc--h-hhHHHHHHHHHHh
Q 042073 38 ANTKAYGVNV--VVA-----VNMFATDSE------AELNAVRIAAMAAGAFDAVVCSHHAHGG--K-GAVDLGIAVQRAC 101 (225)
Q Consensus 38 eNi~~fGvpv--VVA-----IN~F~~DT~------~Ei~~i~~~c~~~g~~~~avs~~wa~GG--~-Ga~~LA~~Vv~~~ 101 (225)
+-++++|+.+ +.+ +|-...|.+ +.++...++|+++|+..+.+...+..+. + .-..+++.+-+++
T Consensus 54 ~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~ 133 (287)
T 2x7v_A 54 REMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVL 133 (287)
T ss_dssp HHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456789984 433 454443432 3455667778899997333333333221 1 1122344444444
Q ss_pred hcCCCCcccccCCC
Q 042073 102 ENVTQPLKFLYPSD 115 (225)
Q Consensus 102 e~~~~~f~~lY~~~ 115 (225)
+. ....+..++..
T Consensus 134 ~~-~~gv~l~lEn~ 146 (287)
T 2x7v_A 134 NN-TEGVVILLENV 146 (287)
T ss_dssp TT-CCSCEEEEECC
T ss_pred cc-cCCCEEEEeCC
Confidence 32 23456666543
No 354
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=26.95 E-value=2.2e+02 Score=23.00 Aligned_cols=135 Identities=8% Similarity=0.054 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCC---C-Cc-H---HHHHHHHHHHHHcCCCeEEEccccccCchh---h-HHHHHHHHH
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFA---T-DS-E---AELNAVRIAAMAAGAFDAVVCSHHAHGGKG---A-VDLGIAVQR 99 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~---~-DT-~---~Ei~~i~~~c~~~g~~~~avs~~wa~GG~G---a-~~LA~~Vv~ 99 (225)
.+.+--+-++++|+.++. ++-|. . +. + +.++...+.|+++|++.+.+...+...+.. + ..+++.+-+
T Consensus 49 ~~~~~~~~l~~~gl~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~ 127 (286)
T 3dx5_A 49 TTERELNCLKDKTLEITM-ISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRM 127 (286)
T ss_dssp HHHHHHHHTGGGTCCEEE-EECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEE-EecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHH
Confidence 333434556779998665 44332 1 11 2 355666777889999843343333222211 1 122222222
Q ss_pred Hhhc-CCCCcccccCCCCCHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHCCCCCCCeeEeecCCCcCC-C--------
Q 042073 100 ACEN-VTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSH-N-------- 169 (225)
Q Consensus 100 ~~e~-~~~~f~~lY~~~~~i~eKI~~IA~IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCmAKTqyS~Sd-d-------- 169 (225)
+++. ....++..|+... .....++ ..-++-+++.+-.++-+|+==-+.-.+. |
T Consensus 128 l~~~a~~~Gv~l~lE~~~---------------~~~~~~~--~~~~~l~~~~~~~~vg~~~D~~h~~~~g~d~~~~l~~~ 190 (286)
T 3dx5_A 128 ICELFAQHNMYVLLETHP---------------NTLTDTL--PSTLELLGEVDHPNLKINLDFLHIWESGADPVDSFQQL 190 (286)
T ss_dssp HHHHHHHTTCEEEEECCT---------------TSTTSSH--HHHHHHHHHHCCTTEEEEEEHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCEEEEecCC---------------CcCcCCH--HHHHHHHHhcCCCCeEEEeccccHhhcCCCHHHHHHHH
Confidence 2221 1234666666431 1111222 2223344555666666776211221222 2
Q ss_pred CCCCceEEeeEEEee
Q 042073 170 APTGFILPIRDVRAS 184 (225)
Q Consensus 170 ~P~~f~~~vrdv~~~ 184 (225)
.|+=..+|++|....
T Consensus 191 ~~~i~~vHl~D~~~~ 205 (286)
T 3dx5_A 191 RPWIQHYHFKNISSA 205 (286)
T ss_dssp GGGEEEEEECEESCG
T ss_pred HhHheEEEecCCccc
Confidence 455567899998654
No 355
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=26.94 E-value=77 Score=28.06 Aligned_cols=27 Identities=4% Similarity=-0.117 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 57 DSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 57 DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
.++++++.|+++|++.|+- +++-+++.
T Consensus 237 ~~~~~l~~l~~l~~~~~~l-lI~DEv~~ 263 (459)
T 4a6r_A 237 PPATYWPEIERICRKYDVL-LVADEVIC 263 (459)
T ss_dssp CCTTHHHHHHHHHHHTTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHcCCE-EEEecccc
Confidence 3889999999999999996 77777755
No 356
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=26.90 E-value=17 Score=35.04 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=38.9
Q ss_pred HHHHHHHHHh-HhccCCCCCCHHHHHHHHHH--HHCCCCCCCeeEeecCCCcCCC
Q 042073 118 IKEKIDTIAR-SYGASGVEYSEEAEKQIKMY--TRQGFSGLPFCMAKTQHSFSHN 169 (225)
Q Consensus 118 i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~--e~~G~~~lPVCmAKTqyS~Sdd 169 (225)
+.++++.+.+ ||...+.+|...--+||..+ +++|+. |..-.||-||-+.+
T Consensus 223 ~~~~~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl~--~~kktktg~st~~~ 275 (592)
T 3pv8_A 223 LAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLP--VLKKTKTGYSTSAD 275 (592)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCC--CCCEETTEECCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCC--CCCCCCCCCCchHH
Confidence 5678899999 99998999988888888874 678873 23567788876654
No 357
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=26.81 E-value=2.5e+02 Score=23.45 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCch-----hhHHHHHHHHHHhhcCCCC
Q 042073 33 LARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGK-----GAVDLGIAVQRACENVTQP 107 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~-----Ga~~LA~~Vv~~~e~~~~~ 107 (225)
+.+=++...+.|+-++|++.- +. |.+.+ ...+..-+++...|+.|.- =..+-++.+.+.+..-+..
T Consensus 106 ~~~k~~~A~~~GL~~ivcVge----~~-e~~~~----~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~ 176 (225)
T 1hg3_A 106 LEAAIRRAEEVGLMTMVCSNN----PA-VSAAV----AALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPE 176 (225)
T ss_dssp HHHHHHHHHHHTCEEEEEESS----HH-HHHHH----HTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCEEEEEeCC----HH-HHHHH----hcCCCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccCC
Confidence 677788888999999999853 33 33332 3345445889999999842 1255567777776643445
Q ss_pred cccccCCCCCHHHHHHHHHhHhccCCC
Q 042073 108 LKFLYPSDVSIKEKIDTIARSYGASGV 134 (225)
Q Consensus 108 f~~lY~~~~~i~eKI~~IA~IYGA~~V 134 (225)
.+.+|.-.-+-.+=++.++ ..|+|++
T Consensus 177 ~~ilyggsV~~~n~~~~~~-~~~vDG~ 202 (225)
T 1hg3_A 177 VKVLCGAGISTGEDVKKAI-ELGTVGV 202 (225)
T ss_dssp SEEEEESSCCSHHHHHHHH-HTTCSEE
T ss_pred CEEEEeCCCCcHHHHHHHH-hCCCCEE
Confidence 7788877655444444433 3344443
No 358
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=26.72 E-value=2.7e+02 Score=22.89 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHhhcCCeEEEEecCC----CC-CcHHHHHHHHHHHHHcCCC
Q 042073 39 NTKAYGVNVVVAVNMF----AT-DSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 39 Ni~~fGvpvVVAIN~F----~~-DT~~Ei~~i~~~c~~~g~~ 75 (225)
-.+.+|+|++|-+... .. -|..+++.+.+.+.+.|+.
T Consensus 140 ~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad 181 (273)
T 2qjg_A 140 TCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGAD 181 (273)
T ss_dssp HHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCC
Confidence 3445777777654210 00 1345565565666777775
No 359
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=26.71 E-value=25 Score=30.21 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccC
Q 042073 35 RHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHG 86 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~G 86 (225)
.|++-+....-|.|+-+.--+-+.+.| ..+.++|++.|+. +..-...+.|
T Consensus 160 ~~l~~~~~~~~~~~~Q~~~~~~~~~~e-~~l~~~~~~~gi~-v~a~spL~~G 209 (312)
T 1pyf_A 160 EQLKEANKDGLVDVLQGEYNLLNREAE-KTFFPYTKEHNIS-FIPYFPLVSG 209 (312)
T ss_dssp HHHHHHTTTSCCCEEEEECBTTBCGGG-TTHHHHHHHHTCE-EEEESTTTTT
T ss_pred HHHHHHHhhCCceEEeccCCccccchH-HHHHHHHHHcCCe-EEEecccccc
Confidence 567777666556666554433444444 2477899999996 6666666666
No 360
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=26.44 E-value=1.7e+02 Score=26.51 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=32.9
Q ss_pred HHHHhhc-CCeEE-EEecCCC---CCcHHHHHHHHHHHHHcCCCeEEE
Q 042073 37 IANTKAY-GVNVV-VAVNMFA---TDSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 37 IeNi~~f-GvpvV-VAIN~F~---~DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
++.+++. |.--| +++..++ .-+.++++.+++.+++.|.. ++.
T Consensus 36 L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~-i~~ 82 (386)
T 3bdk_A 36 LEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLE-ITV 82 (386)
T ss_dssp HHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCE-EEE
T ss_pred HHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCE-EEE
Confidence 5568888 98755 5677776 45789999999999999996 544
No 361
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1
Probab=26.44 E-value=68 Score=25.00 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=35.9
Q ss_pred cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHH
Q 042073 43 YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 98 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv 98 (225)
.|+|++| +..|. ++|..+++.+.+.|+. +++-..-+.+..--.+..+++.
T Consensus 54 ~~~p~~V----L~a~~-~~L~~l~~~a~~~~l~-~~~f~d~~~~~~~~~~~~~~~~ 103 (135)
T 2gax_A 54 SIQPIVV----MATDQ-EALRKIHQRSLERDIT-TSLYIEEMFATGHDAANRQVFS 103 (135)
T ss_dssp BSSCEEE----EEECH-HHHHHHHHHHHHTTCC-CEEEEGGGGGCCCHHHHHHHHT
T ss_pred CCCcEEE----EEECH-HHHHHHHHHHHHCCCc-EEeccHHhhhCCCHHHHHHHHh
Confidence 7899999 77887 9999999999999987 5554444444444444444443
No 362
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=26.43 E-value=2.8e+02 Score=23.01 Aligned_cols=114 Identities=12% Similarity=0.146 Sum_probs=69.8
Q ss_pred HHhhcCCeEEEEe--------c----CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCC
Q 042073 39 NTKAYGVNVVVAV--------N----MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 106 (225)
Q Consensus 39 Ni~~fGvpvVVAI--------N----~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~ 106 (225)
.++++++|+|..- + ++..|...+...+.++..+.|.+++++-. .+ ..-+.++++.+.+.+++..-
T Consensus 94 ~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~--~~-~~~g~~~~~~~~~~~~~~G~ 170 (364)
T 3lop_A 94 VLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIGVTRIGVLY--QE-DALGKEAITGVERTLKAHAL 170 (364)
T ss_dssp HHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEE--ET-THHHHHHHHHHHHHHHTTTC
T ss_pred hHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEE--eC-chhhHHHHHHHHHHHHHcCC
Confidence 5677999988643 1 23346677888889999999987776653 23 23456777788887765321
Q ss_pred Cc--ccccCCC-CCHHHHHHHHHhHhccCCCCC---CHHHHHHHHHHHHCCCCCCCe
Q 042073 107 PL--KFLYPSD-VSIKEKIDTIARSYGASGVEY---SEEAEKQIKMYTRQGFSGLPF 157 (225)
Q Consensus 107 ~f--~~lY~~~-~~i~eKI~~IA~IYGA~~V~~---s~~A~~~l~~~e~~G~~~lPV 157 (225)
++ ...|+.. .+...-+++|.. -+++-|.+ ...+..-++++.++|+. .|+
T Consensus 171 ~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~~~g~~-~~~ 225 (364)
T 3lop_A 171 AITAMASYPRNTANVGPAVDKLLA-ADVQAIFLGATAEPAAQFVRQYRARGGE-AQL 225 (364)
T ss_dssp CCSEEEEECTTSCCCHHHHHHHHH-SCCSEEEEESCHHHHHHHHHHHHHTTCC-CEE
T ss_pred cEEEEEEecCCCccHHHHHHHHHh-CCCCEEEEecCcHHHHHHHHHHHHcCCC-CeE
Confidence 21 2234332 344444444432 23343332 45688889999999984 564
No 363
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=26.40 E-value=1.1e+02 Score=23.57 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=36.6
Q ss_pred EEEecCCCCCc---HHH-HHHHHHHH---HHcCCC-eEEEccccccCchhhHHHHHHHHHHhhcCC--CCcccccCCCCC
Q 042073 48 VVAVNMFATDS---EAE-LNAVRIAA---MAAGAF-DAVVCSHHAHGGKGAVDLGIAVQRACENVT--QPLKFLYPSDVS 117 (225)
Q Consensus 48 VVAIN~F~~DT---~~E-i~~i~~~c---~~~g~~-~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~--~~f~~lY~~~~~ 117 (225)
||.+|-+.+.+ ..| +..+.+.. ++.|+. -+++|.- - .+ .+.+-+++.. .+|..++|.+..
T Consensus 46 vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d---~----~~---~~~~~~~~~~~~~~fp~l~D~~~~ 115 (171)
T 2pwj_A 46 VVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAIN---D----PY---TVNAWAEKIQAKDAIEFYGDFDGS 115 (171)
T ss_dssp EEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESS---C----HH---HHHHHHHHTTCTTTSEEEECTTCH
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCC---C----HH---HHHHHHHHhCCCCceEEEECCccH
Confidence 56678766654 477 66665543 356886 5566531 1 12 2222233222 258888876543
Q ss_pred HHHHHHHHHhHhccC
Q 042073 118 IKEKIDTIARSYGAS 132 (225)
Q Consensus 118 i~eKI~~IA~IYGA~ 132 (225)
+++-||..
T Consensus 116 -------~~~~ygv~ 123 (171)
T 2pwj_A 116 -------FHKSLELT 123 (171)
T ss_dssp -------HHHHHTCE
T ss_pred -------HHHHhCCc
Confidence 45567754
No 364
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=26.28 E-value=3e+02 Score=24.52 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=30.8
Q ss_pred cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEcccc
Q 042073 43 YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHH 83 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~w 83 (225)
..+|+.|=|-- .-|++++..+.+.|++.|+..+.+++..
T Consensus 219 ~~~Pv~vKi~p--~~~~~~~~~ia~~~~~aGadgi~v~ntt 257 (367)
T 3zwt_A 219 HRPAVLVKIAP--DLTSQDKEDIASVVKELGIDGLIVTNTT 257 (367)
T ss_dssp GCCEEEEEECS--CCCHHHHHHHHHHHHHHTCCEEEECCCB
T ss_pred CCceEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 67999998863 3457889999999999999866666654
No 365
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=26.23 E-value=2e+02 Score=22.39 Aligned_cols=78 Identities=8% Similarity=-0.045 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCe-EEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccc
Q 042073 33 LARHIANTKAYGVN-VVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 111 (225)
Q Consensus 33 L~~HIeNi~~fGvp-vVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~l 111 (225)
+.+-++-++++|++ +.+.+|++.+ ..+.+.+++.....-+. ..+.+- ..+.++.. .-+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~v~N~~~~--~~~~~~~~~~~~~~~~~-~~Ip~~------------~~~~~a~~----~g~~~ 231 (254)
T 3kjh_A 171 GLNIEKLAGDLGIKKVRYVINKVRN--IKEEKLIKKHLPEDKIL-GIIPYN------------ELFIELSL----KGEEI 231 (254)
T ss_dssp HHHHHHHHHHHTCSCEEEEEEEECC--HHHHHHHHHHSCGGGEE-EEEECC------------HHHHSCSS----SSCCT
T ss_pred HHHHHHHHHHcCCccEEEEEeCCCC--hhHHHHHHHHhcCCccc-ccccCc------------HHHHHHHh----CCCcc
Confidence 33334445566764 6789999974 44455555443211111 222221 12222222 23455
Q ss_pred cCCCCCHHHHHHHHHh-Hh
Q 042073 112 YPSDVSIKEKIDTIAR-SY 129 (225)
Q Consensus 112 Y~~~~~i~eKI~~IA~-IY 129 (225)
++...+..+-++++|+ +.
T Consensus 232 ~~~~~~~~~~~~~la~~l~ 250 (254)
T 3kjh_A 232 WQSTNPAFVNLHDIYQKLR 250 (254)
T ss_dssp TSTTSTTHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHH
Confidence 5545578888888887 64
No 366
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Probab=26.06 E-value=1.6e+02 Score=24.08 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHCCCCCCCeeEe
Q 042073 138 EEAEKQIKMYTRQGFSGLPFCMA 160 (225)
Q Consensus 138 ~~A~~~l~~~e~~G~~~lPVCmA 160 (225)
+.....++..+++| +||++=
T Consensus 135 ~~~~~~~~~a~~~~---lpv~iH 154 (307)
T 2f6k_A 135 PVLERVYQELDARQ---AIVALH 154 (307)
T ss_dssp GGGHHHHHHHHTTT---CEEEEE
T ss_pred HhHHHHHHHHHHcC---CeEEEC
Confidence 55677888888886 599983
No 367
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=26.04 E-value=1.6e+02 Score=25.93 Aligned_cols=45 Identities=11% Similarity=-0.015 Sum_probs=33.7
Q ss_pred eEEEEecCC--CC---CcHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 46 NVVVAVNMF--AT---DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 46 pvVVAIN~F--~~---DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
..+|.++.. |+ =+.+|++.|.++|++.|+. +.+-++|...+.|..
T Consensus 203 ~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~-li~Deay~~~~~~~~ 252 (448)
T 3meb_A 203 SIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHI-AFFDSAYQGFATGSF 252 (448)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEEESCTTTSSSCH
T ss_pred cEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCE-EEEecccccccCCCc
Confidence 566666543 33 2478999999999999996 888888887776653
No 368
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=25.87 E-value=2.3e+02 Score=21.93 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhc--CCeEEEEecCCCC--C--------c-------HHHHHHHHHHHHHcCCCeEE-Ecccc--------
Q 042073 32 NLARHIANTKAY--GVNVVVAVNMFAT--D--------S-------EAELNAVRIAAMAAGAFDAV-VCSHH-------- 83 (225)
Q Consensus 32 NL~~HIeNi~~f--GvpvVVAIN~F~~--D--------T-------~~Ei~~i~~~c~~~g~~~~a-vs~~w-------- 83 (225)
||.+=|+.+++- +.++|+.. -++. + + .+=-+.+++.|++.|+. ++ +...|
T Consensus 115 ~l~~li~~l~~~~P~~~iil~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~-~iD~~~~~~~~~~~~~ 192 (232)
T 3dc7_A 115 ALMMLLTGLQTNWPTVPKLFIS-AIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVP-HLSLYRDAGMTFAIPA 192 (232)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEE-CCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCC-EEEHHHHSSCCTTSHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEe-CcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCc-EEecccccCCCccchh
Confidence 666667777764 78877743 2222 1 1 34456778899999997 43 11111
Q ss_pred ------cc----CchhhHHHHHHHHHHhhc
Q 042073 84 ------AH----GGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 84 ------a~----GG~Ga~~LA~~Vv~~~e~ 103 (225)
.+ ..+|-..+|+.+.+.+++
T Consensus 193 ~~~~~~~DgvHpn~~G~~~iA~~i~~~l~~ 222 (232)
T 3dc7_A 193 QAAIYSVDTLHPNNAGHRVIARKLQSFLDS 222 (232)
T ss_dssp HHHHHBSSSSSBCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 246777888888887764
No 369
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=25.85 E-value=43 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHHcCCC
Q 042073 58 SEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 58 T~~Ei~~i~~~c~~~g~~ 75 (225)
|++|.+.|.+.|+..|..
T Consensus 23 t~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 23 SPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 689999999999999974
No 370
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=25.83 E-value=49 Score=27.43 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=36.5
Q ss_pred ccHHHHHHhHHHHHHHHHHHhhc--CCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCCeE
Q 042073 21 ENVALVEAGCVNLARHIANTKAY--GVNVV-VAVNMFATDSEAELNAVRIAAMAAGAFDA 77 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~f--GvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~~~ 77 (225)
.+.+.+. ..|.+.++....| |-|+| +-+.... .+++|++.|.+.|.+.|...+
T Consensus 19 ~~~~~l~---~~L~~kl~~~~~ff~~~~vv~l~~~~~~-~~~~~~~~L~~~l~~~~l~~~ 74 (210)
T 1hf2_A 19 QNLEEVL---NAISARITQMGGFFAKGDRISLMIENHN-KHSQDIPRIVSHLRNLGLEVS 74 (210)
T ss_dssp SCHHHHH---HHHHHHHHHTGGGCCTTCEEEEEETTHH-HHGGGHHHHHHHHHHTTCEEE
T ss_pred CCHHHHH---HHHHHHHHhChhhhcCCcEEEEEecCCC-CCHHHHHHHHHHHHHCCCEEE
Confidence 3555554 4678888888875 67775 5554321 356788999999999998633
No 371
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=25.81 E-value=1.4e+02 Score=21.90 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 042073 60 AELNAVRIA 68 (225)
Q Consensus 60 ~Ei~~i~~~ 68 (225)
.|+..+.++
T Consensus 53 ~~~~~l~~~ 61 (159)
T 2a4v_A 53 RQASGFRDN 61 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 372
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=25.78 E-value=1.4e+02 Score=24.75 Aligned_cols=29 Identities=24% Similarity=-0.043 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 58 SEAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 58 T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
+.++++.|.++|++.|+. +.+-++|+..+
T Consensus 168 ~~~~l~~l~~~~~~~~~~-li~De~~~~~~ 196 (377)
T 3fdb_A 168 APEWLNELCDLAHRYDAR-VLVDEIHAPLV 196 (377)
T ss_dssp CHHHHHHHHHHHHHTTCE-EEEECTTGGGB
T ss_pred CHHHHHHHHHHHHHcCCE-EEEEcccchhh
Confidence 467899999999999996 88888887743
No 373
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=25.75 E-value=2.8e+02 Score=24.94 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCCeEEEEec-CCCCCc---HHHHHHH--HHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 34 ARHIANTKAYGVNVVVAVN-MFATDS---EAELNAV--RIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN-~F~~DT---~~Ei~~i--~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
..+++.+.+-|+.-||.+- -|.+|. -.||+.= ++.+++.|...+.....--+--.-...||+.|.+.++.
T Consensus 252 ~d~l~~L~~~G~k~vvv~P~gFvsD~lETL~Eid~E~~~e~a~e~G~~~~~rip~LNd~p~fi~~La~lv~~~l~~ 327 (359)
T 3hcn_A 252 DESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQS 327 (359)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCCSCCCCCHHHHCHHHHHHHHHHTCCCEEEECCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEECCccchhhHHhHHHHHHHHHHHHHHhCCCceEEEcCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3455555556765555554 688875 4777654 46788999965777777777777777888888887764
No 374
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=25.71 E-value=67 Score=30.23 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCCeEEE-----------EecCCCC-------------CcHHHHHHHHHHHHHcCCCeEEE
Q 042073 30 CVNLARHIANTKAYGVNVVV-----------AVNMFAT-------------DSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVV-----------AIN~F~~-------------DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
.+-|++.|+-|..|++++.- -|..||. =|.+|+..|.++|+++|+. ++.
T Consensus 161 ~~~ik~~id~mA~~KlN~lh~HltDdq~wr~ei~~~P~Lt~~Ga~~~~~~~YT~~di~eiv~yA~~rgI~-VIP 233 (507)
T 2gjx_A 161 LSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIR-VLA 233 (507)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHHHHHhCCceEEEEEecccCeeeeccccchhhhccccCCCCCCcCHHHHHHHHHHHHHcCCE-EEE
Confidence 45688899999999998874 2233331 3899999999999999996 654
No 375
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=25.67 E-value=68 Score=27.32 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=65.6
Q ss_pred HhhcCCeEEEEecCCCCCcH------HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccC
Q 042073 40 TKAYGVNVVVAVNMFATDSE------AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 113 (225)
Q Consensus 40 i~~fGvpvVVAIN~F~~DT~------~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~ 113 (225)
+++.|..|+-..+.++.+.+ .+++.++..|+.+|++ ..+-+.-..-.+--.+|.+.+-++ .-..--|=-++
T Consensus 24 l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIp-l~~v~~~g~~~~e~e~l~~~l~~~-~i~~vv~Gdi~- 100 (237)
T 3rjz_A 24 AIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIP-LVKGFTQGEKEKEVEDLKRVLSGL-KIQGIVAGALA- 100 (237)
T ss_dssp HHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCC-EEEEEC------CHHHHHHHHTTS-CCSEEECC----
T ss_pred HHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCC-EEEEECCCCchHHHHHHHHHHHhc-CCcEEEECCcc-
Confidence 45567776555555555422 3577888899999997 544433211111223333333211 00000011111
Q ss_pred CCCCHHHHHHHHHhHhccCCCC--CCHHHHHHHHHHHHCCCCCCCeeEeecCCC
Q 042073 114 SDVSIKEKIDTIARSYGASGVE--YSEEAEKQIKMYTRQGFSGLPFCMAKTQHS 165 (225)
Q Consensus 114 ~~~~i~eKI~~IA~IYGA~~V~--~s~~A~~~l~~~e~~G~~~lPVCmAKTqyS 165 (225)
....+..++.+|.-.|-..+. |-...++=++++-+.||.-.=||++...+.
T Consensus 101 -s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~gL~ 153 (237)
T 3rjz_A 101 -SKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAYGLD 153 (237)
T ss_dssp -CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEESTTCC
T ss_pred -hHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEecCCCC
Confidence 345788889998844554443 233345667778889999988999887653
No 376
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=25.52 E-value=2.8e+02 Score=25.36 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCeEEEEecC----------CCC--C------------cHHHHHHHHHHHHHcCCCeE-EEccccccCchh
Q 042073 35 RHIANTKAYGVNVVVAVNM----------FAT--D------------SEAELNAVRIAAMAAGAFDA-VVCSHHAHGGKG 89 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAIN~----------F~~--D------------T~~Ei~~i~~~c~~~g~~~~-avs~~wa~GG~G 89 (225)
+|++|++++|--.|..+|- |++ | -.+...-+.+.|.++|++.+ .++.+|.+-|+-
T Consensus 26 ~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~ 105 (457)
T 2csu_A 26 EVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEE 105 (457)
T ss_dssp HHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHH
T ss_pred HHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccc
Confidence 7889999987556677774 332 1 23445566777888999732 247788876655
Q ss_pred hHHHHHHHHHHhhc
Q 042073 90 AVDLGIAVQRACEN 103 (225)
Q Consensus 90 a~~LA~~Vv~~~e~ 103 (225)
+.++.+++++.+++
T Consensus 106 g~~~~~~l~~~a~~ 119 (457)
T 2csu_A 106 GKREEKELVEIAHK 119 (457)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 56777888877764
No 377
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=25.44 E-value=3.5e+02 Score=23.81 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=66.8
Q ss_pred cCCeEEEEecCCCCC---cHHHHHHHHH---HHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCC
Q 042073 43 YGVNVVVAVNMFATD---SEAELNAVRI---AAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDV 116 (225)
Q Consensus 43 fGvpvVVAIN~F~~D---T~~Ei~~i~~---~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~ 116 (225)
..+||.|-|---..| |++|++..++ .++++|+..+++- .-..-|.=-.+..+++++.+..-+-.|+..+|.-.
T Consensus 88 ~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG-~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~ 166 (287)
T 3iwp_A 88 VQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFG-ALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVH 166 (287)
T ss_dssp CCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC-CBCTTSCBCHHHHHHHHHHHTTSCEEECGGGGGCS
T ss_pred cCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe-eeCCCCCcCHHHHHHHHHHcCCCcEEEECchhccC
Confidence 579999999753332 4888888755 4778999744432 11233344566777788877532344888888876
Q ss_pred CHHHHHHHHHhHhccCCCCCC------HHHHHHHHHHHHCCCCCCCee
Q 042073 117 SIKEKIDTIARSYGASGVEYS------EEAEKQIKMYTRQGFSGLPFC 158 (225)
Q Consensus 117 ~i~eKI~~IA~IYGA~~V~~s------~~A~~~l~~~e~~G~~~lPVC 158 (225)
...+=++.++. ||-+.|=-| .+-...|+++.++-=++++|.
T Consensus 167 d~~~Ale~Li~-lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~a~~rI~Im 213 (287)
T 3iwp_A 167 DPMAALETLLT-LGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVM 213 (287)
T ss_dssp CHHHHHHHHHH-HTCSEEEECTTSSSTTTTHHHHHHHHHHHTTSSEEE
T ss_pred CHHHHHHHHHH-cCCCEEECCCCCCChHHhHHHHHHHHHHhCCCCEEE
Confidence 66666776665 343332222 233444555544322345554
No 378
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=25.41 E-value=3.2e+02 Score=24.65 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=49.1
Q ss_pred HHHhHHHHHHHHHHHh-hcCCeEEEEecCCCCC-----cHHHHHHHHHHHHHcCCCeEEEccccccCch----hhHHHHH
Q 042073 26 VEAGCVNLARHIANTK-AYGVNVVVAVNMFATD-----SEAELNAVRIAAMAAGAFDAVVCSHHAHGGK----GAVDLGI 95 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~-~fGvpvVVAIN~F~~D-----T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~----Ga~~LA~ 95 (225)
+-.|...+.+++..+. ++++||++=+-+..+. -+..|+...+.++ .++. .-.+.+--||+. =-+++.+
T Consensus 68 ~v~g~~~~a~~v~~~A~~~~VPVaLHlDHg~~~~ld~~~~~~l~~~~~~i~-~~i~-~GFtSVMiDgS~lp~eENi~~Tk 145 (349)
T 3elf_A 68 MVTGAVALAEFTHVIAAKYPVNVALHTDHCPKDKLDSYVRPLLAISAQRVS-KGGN-PLFQSHMWDGSAVPIDENLAIAQ 145 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEECCCCGGGGGGTHHHHHHHHHHHHH-TTCC-CSCSEEEECCTTSCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcccchhhhhhHHHHHHHHH-HHhh-cCCCEEEecCCCCCHHHHHHHHH
Confidence 4567889999998885 4999999999888642 1334455556555 3332 234445555553 4456888
Q ss_pred HHHHHhh
Q 042073 96 AVQRACE 102 (225)
Q Consensus 96 ~Vv~~~e 102 (225)
+|++.+.
T Consensus 146 ~vv~~ah 152 (349)
T 3elf_A 146 ELLKAAA 152 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888775
No 379
>2lyd_B Pacman protein; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=25.24 E-value=26 Score=21.93 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.6
Q ss_pred ccCCCCCCCcee
Q 042073 199 TMLGLPTRPCFY 210 (225)
Q Consensus 199 tMPGLpk~Paa~ 210 (225)
.||-||+.|-++
T Consensus 17 qmp~lp~pplfw 28 (38)
T 2lyd_B 17 QMPNLPKPPLFW 28 (38)
T ss_dssp CCCCCCCCCHHH
T ss_pred cccCCCCCchHH
Confidence 599999988653
No 380
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=25.19 E-value=1.5e+02 Score=21.70 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
+++|.+..+.++..|+. ||+|+. ||.+++ ++|+++.|..
T Consensus 55 ~~~l~~~~~~~~~~~~~-vv~vs~---d~~~~~---~~~~~~~~~~ 93 (163)
T 3gkn_A 55 GLDFNALLPEFDKAGAK-ILGVSR---DSVKSH---DNFCAKQGFA 93 (163)
T ss_dssp HHHHHHHHHHHHHTTCE-EEEEES---SCHHHH---HHHHHHHCCS
T ss_pred HHHHHHHHHHHHHCCCE-EEEEeC---CCHHHH---HHHHHHhCCC
Confidence 44555555555555554 344443 444443 3444455553
No 381
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Probab=25.15 E-value=1.5e+02 Score=24.94 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcCCeEEE---EecCCC--------------CCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 30 CVNLARHIANTKAYGVNVVV---AVNMFA--------------TDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVV---AIN~F~--------------~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
-..+++.++.|++.|+++|= -...+. .+.-+-++.+.++|.+.|+. +.+.
T Consensus 44 ~~~~~~d~~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~~~~~~~~~~~~ld~~~~~a~~~Gi~-vil~ 110 (353)
T 2c0h_A 44 KSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNIL-IFFT 110 (353)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCTTHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred hHHHHHHHHHHHHcCCCEEEEceecCCccCccccCCCccccCCHHHHHHHHHHHHHHHHcCCE-EEEE
Confidence 35788999999999999982 222111 02234678899999999996 7663
No 382
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=25.04 E-value=1.4e+02 Score=26.10 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=46.5
Q ss_pred cccccccHHHHHHhHHHHHHHHHHH-h---------------------hcCCeEEEE--ecCCCCCcHHHHHHHHHHHHH
Q 042073 16 HAYLNENVALVEAGCVNLARHIANT-K---------------------AYGVNVVVA--VNMFATDSEAELNAVRIAAMA 71 (225)
Q Consensus 16 ~~l~~eN~~al~~G~~NL~~HIeNi-~---------------------~fGvpvVVA--IN~F~~DT~~Ei~~i~~~c~~ 71 (225)
.+.-++|.+++.+-+..|.+-++.. . .||+.++-. ++.=..=|.++|+.|.+.+++
T Consensus 172 a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yGL~~~~~~~~~~~~eps~~~l~~l~~~ik~ 251 (321)
T 1xvl_A 172 AKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKT 251 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHH
Confidence 3445678888888888888887753 2 156654321 233344578888888888888
Q ss_pred cCCCeEEEcccccc
Q 042073 72 AGAFDAVVCSHHAH 85 (225)
Q Consensus 72 ~g~~~~avs~~wa~ 85 (225)
.++. +++.+....
T Consensus 252 ~~v~-~If~e~~~~ 264 (321)
T 1xvl_A 252 NNVP-TIFCESTVS 264 (321)
T ss_dssp TTCS-EEEEETTSC
T ss_pred cCCc-EEEEeCCCC
Confidence 8886 777666554
No 383
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=24.85 E-value=3.4e+02 Score=23.45 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHHHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 33 LARHIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 33 L~~HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
+...|+.+++ .++|++|-+-.|..+ .++. +.+.+.|+.-+.++++
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~-~~~a----~~a~~~Gad~I~v~~~ 211 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMS-KASA----GKLYEAGAAAVDIGGY 211 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCC-HHHH----HHHHHHTCSEEEEEC-
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCC-HHHH----HHHHHcCCCEEEEcCC
Confidence 5667888875 799999976334333 3332 4566789985556554
No 384
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=24.75 E-value=24 Score=33.60 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHHHHh-HhccCCCCCCHHHHHHHHHH--HHCCCCCCCeeEe-ecCCCcCCC
Q 042073 118 IKEKIDTIAR-SYGASGVEYSEEAEKQIKMY--TRQGFSGLPFCMA-KTQHSFSHN 169 (225)
Q Consensus 118 i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~--e~~G~~~lPVCmA-KTqyS~Sdd 169 (225)
+.++++.+.+ ||...+.+|.+.--+||..+ +++|+. |.--. ||.||-+.+
T Consensus 171 ~~~~~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl~--~~~kt~ktg~st~~~ 224 (540)
T 4dfk_A 171 VAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLP--AIGKTEKTGKRSTSA 224 (540)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCC--CCCBCTTTCCBCCCH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCC--CCCCCCCCCCCCcHH
Confidence 4678889999 99988999988888888775 578874 22344 677776543
No 385
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=24.71 E-value=1.1e+02 Score=27.83 Aligned_cols=57 Identities=7% Similarity=-0.035 Sum_probs=36.2
Q ss_pred ccHHHHHHh--HHHHHHHHHHHhhcCCe-EE-EEecCCCCCcHHHHHHHHHHHHHcCCCeE
Q 042073 21 ENVALVEAG--CVNLARHIANTKAYGVN-VV-VAVNMFATDSEAELNAVRIAAMAAGAFDA 77 (225)
Q Consensus 21 eN~~al~~G--~~NL~~HIeNi~~fGvp-vV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~~~ 77 (225)
+-+.++.++ .+...+=|+.+++.|++ +- -.|--+|.+|.+++....+++.++++..+
T Consensus 177 ~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i 237 (457)
T 1olt_A 177 EVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRL 237 (457)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEE
Confidence 334444333 34455566677777776 32 23445788888888888888888887633
No 386
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=24.62 E-value=1.2e+02 Score=26.73 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=39.7
Q ss_pred CCeEEEEecCCCCCcHH----HHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHH
Q 042073 44 GVNVVVAVNMFATDSEA----ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIK 119 (225)
Q Consensus 44 GvpvVVAIN~F~~DT~~----Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~ 119 (225)
.+| ||=+..|.+++.+ ..+.|.+.|++.|.. .+.+|= - ..+|-+++.+.+.+ .|+ +|.+
T Consensus 46 ~iP-vIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF--~v~nHG----i-~~~l~~~~~~~~~~-------FF~--lP~e 108 (356)
T 1gp6_A 46 QVP-TIDLKNIESDDEKIRENCIEELKKASLDWGVM--HLINHG----I-PADLMERVKKAGEE-------FFS--LSVE 108 (356)
T ss_dssp CCC-EEECTTTTCSCHHHHHHHHHHHHHHHHHTSEE--EEESCS----C-CHHHHHHHHHHHHH-------HHT--SCHH
T ss_pred CCC-EEEchhccCCChHHHHHHHHHHHHHHHhCCEE--EEeCCC----C-CHHHHHHHHHHHHH-------HHC--CCHH
Confidence 477 5667777654433 678899999999995 455551 1 13666777666542 232 3666
Q ss_pred HHHH
Q 042073 120 EKID 123 (225)
Q Consensus 120 eKI~ 123 (225)
+|.+
T Consensus 109 eK~~ 112 (356)
T 1gp6_A 109 EKEK 112 (356)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 6654
No 387
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=24.61 E-value=1.3e+02 Score=27.36 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=33.2
Q ss_pred cCCeE-EEEecC-CCCCcHHHHHHHHHHHHHcCCCeEEEccc-cccCchhhHHHHH
Q 042073 43 YGVNV-VVAVNM-FATDSEAELNAVRIAAMAAGAFDAVVCSH-HAHGGKGAVDLGI 95 (225)
Q Consensus 43 fGvpv-VVAIN~-F~~DT~~Ei~~i~~~c~~~g~~~~avs~~-wa~GG~Ga~~LA~ 95 (225)
.|..+ +|-+|+ +..++++|.+.++++|++.|++ +.+.+. ....|.+-.+.|+
T Consensus 41 ~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~-~~v~~~~~~~~~~~~e~~aR 95 (433)
T 1ni5_A 41 PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVP-LVVERVQLAQEGLGIEAQAR 95 (433)
T ss_dssp TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCC-EEEECCCCCCSSSTTTTHHH
T ss_pred CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCc-EEEEEecCCCCCCCHHHHHH
Confidence 56655 456775 4456788999999999999997 655432 1123444444443
No 388
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=24.60 E-value=1.1e+02 Score=24.68 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=9.9
Q ss_pred CCCCceEEeeEEEe
Q 042073 170 APTGFILPIRDVRA 183 (225)
Q Consensus 170 ~P~~f~~~vrdv~~ 183 (225)
.++=..+|++|...
T Consensus 182 ~~~i~~vHl~D~~~ 195 (257)
T 3lmz_A 182 HTRVFDMHIKDVTD 195 (257)
T ss_dssp GGGEEEEEECEESC
T ss_pred hcceeEEeeccccc
Confidence 44556789999875
No 389
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=24.55 E-value=97 Score=25.10 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=7.2
Q ss_pred HHHHHHHHhhcCCeEEE
Q 042073 33 LARHIANTKAYGVNVVV 49 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVV 49 (225)
+.++++-.+++|+|+++
T Consensus 114 f~~~l~~a~~~~lpv~i 130 (264)
T 1xwy_A 114 FVAQLRIAADLNMPVFM 130 (264)
T ss_dssp HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 33344444444444443
No 390
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=24.52 E-value=1e+02 Score=23.56 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhh---cCCeEEEEecCCCCCcH--HHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHH
Q 042073 30 CVNLARHIANTKA---YGVNVVVAVNMFATDSE--AELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 99 (225)
Q Consensus 30 ~~NL~~HIeNi~~---fGvpvVVAIN~F~~DT~--~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~ 99 (225)
+.|+.+.++.+++ -+.|+++++|++.-... ...+..+.++.+.++. +.- .=+.=|+|-.++-+.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 117 YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEE--EeCCCCCCHHHHHHHHHH
Confidence 4555554444443 47899999999754321 1133456667777764 332 224455666666665554
No 391
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=24.45 E-value=1.4e+02 Score=25.67 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=37.9
Q ss_pred cCCeEEEEecC------CCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHH
Q 042073 43 YGVNVVVAVNM------FATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 97 (225)
Q Consensus 43 fGvpvVVAIN~------F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~V 97 (225)
+|..|++.=|. |+...++-.+-+.++...-.++ +++| +.||.|+..|-..+
T Consensus 32 ~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~-aI~~---~rGGyga~rlL~~l 88 (274)
T 3g23_A 32 PDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFE-AVWF---VRGGYGANRIAEDA 88 (274)
T ss_dssp TTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCS-EEEE---SCCSSCTHHHHHHH
T ss_pred CCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCC-EEEE---eeccccHHHHHHhh
Confidence 89999997553 4444455566666666667886 7776 68999999999887
No 392
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=24.29 E-value=3e+02 Score=22.62 Aligned_cols=14 Identities=14% Similarity=-0.164 Sum_probs=7.5
Q ss_pred HHHHHHHHHHcCCC
Q 042073 62 LNAVRIAAMAAGAF 75 (225)
Q Consensus 62 i~~i~~~c~~~g~~ 75 (225)
++...+.|+++|++
T Consensus 107 ~~~~i~~A~~lGa~ 120 (296)
T 2g0w_A 107 EQTTFHMARLFGVK 120 (296)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 33444455666665
No 393
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=24.27 E-value=2.4e+02 Score=24.62 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 29 GCVNLARHIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 29 G~~NL~~HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
|+.+|.+++..+.+ +++||++=+.+..+ .+.+++ |.+.|.. .+.-+.=..==+=-+++.++|++.+.
T Consensus 58 g~~~~~~~v~~~a~~~~VPValHlDHg~~-----~e~i~~-ai~~GFt-SVMiDgS~lp~eeNi~~Tk~vv~~ah 125 (286)
T 1gvf_A 58 ALEEIYALCSAYSTTYNMPLALHLDHHES-----LDDIRR-KVHAGVR-SAMIDGSHFPFAENVKLVKSVVDFCH 125 (286)
T ss_dssp CHHHHHHHHHHHHHHTTSCBEEEEEEECC-----HHHHHH-HHHTTCC-EEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEcCCCCC-----HHHHHH-HHHcCCC-eEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 78888888888754 99998888877754 233333 4456765 33333222222344556777777665
No 394
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=24.09 E-value=3.5e+02 Score=23.36 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=51.1
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhh----------------------cCCeEEEE--ecCCCCCcHHHHHHHHHHHHHc
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKA----------------------YGVNVVVA--VNMFATDSEAELNAVRIAAMAA 72 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~----------------------fGvpvVVA--IN~F~~DT~~Ei~~i~~~c~~~ 72 (225)
+.-++|.+++.+-+..|.+.++..-. ||+.++-. ++--..=|.++|+.|.+.+++.
T Consensus 166 ~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 245 (313)
T 1toa_A 166 REFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQR 245 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHc
Confidence 44567888888888888888766422 44443211 1222334788999999999999
Q ss_pred CCCeEEEccccccCchhhHHHHHHHHHH
Q 042073 73 GAFDAVVCSHHAHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 73 g~~~~avs~~wa~GG~Ga~~LA~~Vv~~ 100 (225)
++. +++.+.... -.+++.+.++
T Consensus 246 ~v~-~If~e~~~~-----~~~~~~la~~ 267 (313)
T 1toa_A 246 KLP-AIFIESSIP-----HKNVEALRDA 267 (313)
T ss_dssp TCS-EEEEETTSC-----THHHHHHHHH
T ss_pred CCC-EEEEeCCCC-----hHHHHHHHcc
Confidence 997 777766553 3456666543
No 395
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=24.04 E-value=3.2e+02 Score=22.85 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=67.3
Q ss_pred HHHHhhcCCeEEEEe-------c--------CCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHh
Q 042073 37 IANTKAYGVNVVVAV-------N--------MFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 101 (225)
Q Consensus 37 IeNi~~fGvpvVVAI-------N--------~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~ 101 (225)
.+.++++++|+|..- + |+..|+..+...+.+++.+.|.+.+++- +.+. .-+.++++.+.+.+
T Consensus 90 ~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii--~~~~-~~g~~~~~~~~~~~ 166 (379)
T 3n0w_A 90 NNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLM--LPDA-AYGDLMNAAIRREL 166 (379)
T ss_dssp HHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEE--EESS-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEE--eccc-chhHHHHHHHHHHH
Confidence 445677999998751 1 3455777788888899988999877665 3333 33456666666666
Q ss_pred hcCCCC--cccccCCC-CCHHHHHHHHHhHhccCCCC---CCHHHHHHHHHHHHCCCCC
Q 042073 102 ENVTQP--LKFLYPSD-VSIKEKIDTIARSYGASGVE---YSEEAEKQIKMYTRQGFSG 154 (225)
Q Consensus 102 e~~~~~--f~~lY~~~-~~i~eKI~~IA~IYGA~~V~---~s~~A~~~l~~~e~~G~~~ 154 (225)
++..-+ ....|+.. .+...-+.+|.. -+++-|. +...+..-++++.++|+..
T Consensus 167 ~~~G~~v~~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~~~~~~~~~~~~~~~g~~~ 224 (379)
T 3n0w_A 167 TAGGGQIVGSVRFPFETQDFSSYLLQAKA-SGAQLIVSTSGGAANINIMKQAREFGLPS 224 (379)
T ss_dssp HHHTCEEEEEEEECTTCCCCHHHHHHHHH-HTCSEEEECCCHHHHHHHHHHHHHTTCSC
T ss_pred HHcCCEEEEEEeCCCCCCCHHHHHHHHHH-CCCCEEEEecccchHHHHHHHHHHcCCCC
Confidence 542111 12234432 334444444422 2333332 2367778889999999854
No 396
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=23.97 E-value=1.3e+02 Score=25.63 Aligned_cols=55 Identities=7% Similarity=-0.113 Sum_probs=37.1
Q ss_pred ccHHHHHHh--HHHHHHHHHHHhhcCCeEEEEe-cCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 21 ENVALVEAG--CVNLARHIANTKAYGVNVVVAV-NMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 21 eN~~al~~G--~~NL~~HIeNi~~fGvpvVVAI-N~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
+-.+.+..+ +....+-++.+++.|+++.+.+ =-+|.+|.+++..+.++++++|+.
T Consensus 166 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~ 223 (348)
T 3iix_A 166 VLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFD 223 (348)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 334444433 3444555556667898865543 246689999999999999999886
No 397
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A
Probab=23.93 E-value=2.6e+02 Score=23.33 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHc-CCCeEEEccccccC
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAA-GAFDAVVCSHHAHG 86 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~-g~~~~avs~~wa~G 86 (225)
+-+.++++-++++|+|+++-+.. ..+..+.+.+++. +++ + +-+|+...
T Consensus 122 ~~~~~~~~~~~~~glpv~ih~~~------~~l~~l~~ll~~~P~l~-i-Vi~H~G~p 170 (303)
T 4do7_A 122 ADFARGVAWLQANDYVYDVLVFE------RQLPDVQAFCARHDAHW-L-VLDHAGKP 170 (303)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCG------GGHHHHHHHHHHCCSSC-E-EEGGGGCC
T ss_pred HHHHHHHHHHHHCCCeEEEecCH------HHHHHHHHHHHHCCCCC-E-EEeCCCCC
Confidence 56788999999999999996532 2455667777777 476 5 45677663
No 398
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}
Probab=23.85 E-value=2.9e+02 Score=22.28 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHhhcCCeEEEEecC
Q 042073 34 ARHIANTKAYGVNVVVAVNM 53 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~ 53 (225)
+..++.|+..|+-.+|....
T Consensus 16 ~~~l~~m~~~Gv~~~v~~~~ 35 (272)
T 3cjp_A 16 EKHIKIMDEAGVDKTILFST 35 (272)
T ss_dssp HHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 45566666677766666554
No 399
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=23.80 E-value=1.7e+02 Score=24.88 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=33.4
Q ss_pred CeEEEEecC--CCC---CcHHHHHHHHHHHHHcCCCeEEEccccccCchhh
Q 042073 45 VNVVVAVNM--FAT---DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGA 90 (225)
Q Consensus 45 vpvVVAIN~--F~~---DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga 90 (225)
-..++.++. .|+ =+.+|++.|.++|++.|+. +.+-+.|...+-+.
T Consensus 183 ~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~-li~De~y~~~~~~~ 232 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHI-PFVDMAYQGFATGQ 232 (409)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCE-EEEEESCTTTTTSC
T ss_pred CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcE-EEEeccccccccCC
Confidence 455666543 333 2478999999999999996 88888888777654
No 400
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=23.64 E-value=2e+02 Score=23.47 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHhHhccCCC
Q 042073 59 EAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGV 134 (225)
Q Consensus 59 ~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~IYGA~~V 134 (225)
..-++...++++..+.. +.+-.+|..+. +.+.-+.+.+.++...-+.+..... .+..+-|...|+-.+++=|
T Consensus 184 ~~al~~a~~la~~~~~~-l~ll~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dLl 255 (294)
T 3loq_A 184 DRALEYAKFVVKKTGGE-LHIIHVSEDGD--KTADLRVMEEVIGAEGIEVHVHIES-GTPHKAILAKREEINATTI 255 (294)
T ss_dssp HHHHHHHHHHHHHHTCE-EEEEEECSSSC--CHHHHHHHHHHHHHTTCCEEEEEEC-SCHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhhhcCCE-EEEEEEccCch--HHHHHHHHHHHHHHcCCcEEEEEec-CCHHHHHHHHHHhcCcCEE
Confidence 34466666666666774 66777776654 3343444444443322222322222 2556666655553344433
No 401
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=23.64 E-value=1.1e+02 Score=28.46 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=61.7
Q ss_pred cCCeEEEEecCCCCCcHHHHHHHHHHHHHc-CCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHH
Q 042073 43 YGVNVVVAVNMFATDSEAELNAVRIAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEK 121 (225)
Q Consensus 43 fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~-g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eK 121 (225)
|+.-.|+.-+ .++..+.+..+.+..++. +++ ..+. --.+.+++.++.+..+ + -.+|+.+..=-++
T Consensus 126 ~~aD~I~l~~--~~~dpe~~~~~Vk~V~e~~dvP-lsID--------~dp~vleaale~~~d~-~--pLIns~t~en~~~ 191 (445)
T 2h9a_A 126 HSVNLVALKG--SSQDAATFAKAVATAREVTDLP-FILI--------GTPEQLAAALETEGAN-N--PLLYAATADNYEQ 191 (445)
T ss_dssp EECCEEEEEC--TTCCHHHHHHHHHHHHHHCCSC-EEEE--------SCHHHHHHHHHHHGGG-C--CEEEEECTTTHHH
T ss_pred ccCcEEEEeC--CCCCHHHHHHHHHHHHHhcCCC-EEEE--------CCHHHHHHHHHhcCCC-C--CEEEECCHHHHHH
Confidence 4466666555 455577777776666654 776 6665 2366777777776532 1 1344444321266
Q ss_pred HHHHHhHhccCCCCCC---HHHHHHHHHHHHCCCCCC
Q 042073 122 IDTIARSYGASGVEYS---EEAEKQIKMYTRQGFSGL 155 (225)
Q Consensus 122 I~~IA~IYGA~~V~~s---~~A~~~l~~~e~~G~~~l 155 (225)
+-.+|.-|++.=|..+ ..+++.++.++++|+.++
T Consensus 192 ~~~la~~y~~~vV~~~~~l~~l~~lv~~a~~~Gi~~I 228 (445)
T 2h9a_A 192 MVELAKKYNVPLTVSAKGLDALAELVQKITALGYKNL 228 (445)
T ss_dssp HHHHHHHHTCCEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHCCCCcE
Confidence 6666668998777766 456667777888888643
No 402
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=23.61 E-value=2.2e+02 Score=23.75 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHCCCCCCCeeEee
Q 042073 137 SEEAEKQIKMYTRQGFSGLPFCMAK 161 (225)
Q Consensus 137 s~~A~~~l~~~e~~G~~~lPVCmAK 161 (225)
.+.....++.++++|+ ||++==
T Consensus 137 d~~~~~~~~~a~e~gl---pv~iH~ 158 (291)
T 3irs_A 137 DRRLYPLYAFCEDNGI---PVIMMT 158 (291)
T ss_dssp CGGGHHHHHHHHHTTC---CEEEEC
T ss_pred CHHHHHHHHHHHHcCC---eEEEeC
Confidence 3556777888888865 888753
No 403
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=23.57 E-value=1.6e+02 Score=26.62 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=37.7
Q ss_pred ccHHHHHHhHHHHHHHHHHHhhcC--CeEEEEecC-CCCC---cHHHHHHHHHHHHHcCCCeEEEccccccC
Q 042073 21 ENVALVEAGCVNLARHIANTKAYG--VNVVVAVNM-FATD---SEAELNAVRIAAMAAGAFDAVVCSHHAHG 86 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~fG--vpvVVAIN~-F~~D---T~~Ei~~i~~~c~~~g~~~~avs~~wa~G 86 (225)
-|+++|++-+.. .+.-| .-+||.+|- -||. +.++++.|.++|++.|+. +.+-++|..+
T Consensus 219 ~d~~~l~~~l~~-------~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~-li~Deay~~~ 282 (500)
T 3tcm_A 219 LETSDVKKQLED-------ARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLV-LLADEVYQEN 282 (500)
T ss_dssp CCHHHHHHHHHH-------HHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEECTTTTC
T ss_pred CCHHHHHHHHHH-------HHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCE-EEEecCcccc
Confidence 467776655433 33333 234554442 3343 458999999999999996 8888888873
No 404
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=23.55 E-value=1.7e+02 Score=25.28 Aligned_cols=55 Identities=25% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCch----hhHHHHHHHHHHh
Q 042073 37 IANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGK----GAVDLGIAVQRAC 101 (225)
Q Consensus 37 IeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~----Ga~~LA~~Vv~~~ 101 (225)
++.+++.|+|+++-+ +|.++.. .+.+.|+. +.+.+.+..||. ...+|.++|.+..
T Consensus 103 i~~l~~~g~~v~~~v-----~~~~~a~----~~~~~GaD-~i~v~g~~~GG~~g~~~~~~ll~~i~~~~ 161 (332)
T 2z6i_A 103 MERFHEAGIIVIPVV-----PSVALAK----RMEKIGAD-AVIAEGMEAGGHIGKLTTMTLVRQVATAI 161 (332)
T ss_dssp HHHHHHTTCEEEEEE-----SSHHHHH----HHHHTTCS-CEEEECTTSSEECCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCeEEEEe-----CCHHHHH----HHHHcCCC-EEEEECCCCCCCCCCccHHHHHHHHHHhc
Confidence 555666788888766 4555543 35568886 555555555653 3456666666543
No 405
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=23.54 E-value=3.5e+02 Score=23.13 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCeEEEEec--CCCCCc----HHHHHHHHHHHHHcCCCe--EEEccc--c-ccCchhhHHHHHHHHHH
Q 042073 32 NLARHIANTKAYGVNVVVAVN--MFATDS----EAELNAVRIAAMAAGAFD--AVVCSH--H-AHGGKGAVDLGIAVQRA 100 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN--~F~~DT----~~Ei~~i~~~c~~~g~~~--~avs~~--w-a~GG~Ga~~LA~~Vv~~ 100 (225)
|+.+.++-+++||.|+|+-=+ +-...| -+.++.+.+.|.++|++. ..+--. | ++|-+-+.++-+.+-..
T Consensus 113 ~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~ 192 (271)
T 2yci_X 113 KMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQI 192 (271)
T ss_dssp HHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHH
Confidence 345667777889999888654 322234 344455566688899862 343333 4 66666666776666555
Q ss_pred h
Q 042073 101 C 101 (225)
Q Consensus 101 ~ 101 (225)
-
T Consensus 193 ~ 193 (271)
T 2yci_X 193 K 193 (271)
T ss_dssp T
T ss_pred H
Confidence 4
No 406
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=23.48 E-value=95 Score=27.94 Aligned_cols=54 Identities=6% Similarity=-0.002 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCC-----CCcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 30 CVNLARHIANTKAYGVNVVVAVNMFA-----TDSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVVAIN~F~-----~DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
+..|++.|+....-.+-.|+.-.-+. ..++++++.|+++|++.|+- +++-+++.
T Consensus 207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gil-lI~DEv~~ 265 (476)
T 3i5t_A 207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL-YISDEVVT 265 (476)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCE-EEEECTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE-EEEEeccc
Confidence 34455555432212233344433444 34789999999999999996 77766655
No 407
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=23.46 E-value=2.8e+02 Score=22.49 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCCC--cccccCCCCCHHHHHHHHHhHhccCC
Q 042073 91 VDLGIAVQRACENVTQP--LKFLYPSDVSIKEKIDTIARSYGASG 133 (225)
Q Consensus 91 ~~LA~~Vv~~~e~~~~~--f~~lY~~~~~i~eKI~~IA~IYGA~~ 133 (225)
.|+|++++.+++++... |...-+...+.+|=++.|+++.|-..
T Consensus 196 ~Dva~a~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~ 240 (298)
T 4b4o_A 196 GDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRA 240 (298)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCC
Confidence 58999999998753222 44445566789999999999667543
No 408
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Probab=23.28 E-value=1.3e+02 Score=25.62 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCeEEEE-e--cCCCC---------CcHHHHHHHHHHHHHcCCCeEEEccccccC
Q 042073 33 LARHIANTKAYGVNVVVA-V--NMFAT---------DSEAELNAVRIAAMAAGAFDAVVCSHHAHG 86 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVA-I--N~F~~---------DT~~Ei~~i~~~c~~~g~~~~avs~~wa~G 86 (225)
-++.++.|+..|+.+|=. + -+|.. +.-+.++.+.++|++.|+. +.+.-|...|
T Consensus 38 ~~~d~~~i~~~G~n~vRi~i~~~~~~~~~~p~~~~~~~~~~ld~~v~~a~~~Gi~-vildlh~~pg 102 (341)
T 1vjz_A 38 KEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIH-ICISLHRAPG 102 (341)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTCE-EEEEEEEETT
T ss_pred CHHHHHHHHHcCCCEEEeeCCHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHcCCE-EEEEecCCCC
Confidence 356788899999998833 2 22322 3456788999999999996 8887665443
No 409
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=23.16 E-value=3.2e+02 Score=24.50 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=51.3
Q ss_pred HHHHHHhh-cCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccc---cCchhhHHHHHHHHHHhhcCCCCccc
Q 042073 35 RHIANTKA-YGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHA---HGGKGAVDLGIAVQRACENVTQPLKF 110 (225)
Q Consensus 35 ~HIeNi~~-fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa---~GG~Ga~~LA~~Vv~~~e~~~~~f~~ 110 (225)
..|+.+++ .++|++|-.- -|.++ .+.|.+.|+.-+.+++|-. +||-...++-.+|.+.+. ..+..
T Consensus 207 ~~i~~lr~~~~~PvivK~v----~~~e~----A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~---~~ipV 275 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGI----LTKED----AELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVK---GKIEV 275 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEE----CSHHH----HHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHT---TSSEE
T ss_pred HHHHHHHHhcCCCEEEEec----CcHHH----HHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhC---CCCeE
Confidence 45788876 7999999864 23333 3456789998677777643 233344555555555442 12322
Q ss_pred ccCCC-CCHHHHHHHHHhHhccCCCCCCH
Q 042073 111 LYPSD-VSIKEKIDTIARSYGASGVEYSE 138 (225)
Q Consensus 111 lY~~~-~~i~eKI~~IA~IYGA~~V~~s~ 138 (225)
+-+-. .+-.+=++.+| .||+.|-.-.
T Consensus 276 ia~GGI~~g~Dv~kaLa--lGA~aV~iGr 302 (352)
T 3sgz_A 276 YMDGGVRTGTDVLKALA--LGARCIFLGR 302 (352)
T ss_dssp EEESSCCSHHHHHHHHH--TTCSEEEESH
T ss_pred EEECCCCCHHHHHHHHH--cCCCEEEECH
Confidence 22222 24444444444 5777776544
No 410
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=23.14 E-value=1.2e+02 Score=24.63 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHhh---cCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 28 AGCVNLARHIANTKA---YGVNVV-VAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 28 ~G~~NL~~HIeNi~~---fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
.++..+.+.++.+++ -++++. |.+|++...+...-+.+.++.+..|..
T Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 149 EGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHcccc
Confidence 344555566666553 367875 889999876644333344444444553
No 411
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=23.14 E-value=1.2e+02 Score=27.59 Aligned_cols=42 Identities=17% Similarity=0.032 Sum_probs=31.2
Q ss_pred CeEEEEecC-CCCC---cHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 45 VNVVVAVNM-FATD---SEAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 45 vpvVVAIN~-F~~D---T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
..+||.+|- .||- +.++++.|.++|++.|+. +.+-++|.++.
T Consensus 236 ~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~-li~De~y~~~~ 281 (498)
T 3ihj_A 236 PKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLF-LLADEVYQDNV 281 (498)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEECTTTTCB
T ss_pred CeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcE-EEEEcCccccc
Confidence 455666653 3443 468999999999999996 88888888743
No 412
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.13 E-value=3e+02 Score=22.34 Aligned_cols=118 Identities=4% Similarity=-0.104 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCeEEEEe------------cCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhh
Q 042073 35 RHIANTKAYGVNVVVAV------------NMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 35 ~HIeNi~~fGvpvVVAI------------N~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
...+-++++++|+|..- -++..|...+...+.++..+.|.+++++- .. ...-+.+.++...+.++
T Consensus 84 ~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i--~~-~~~~~~~~~~~~~~~l~ 160 (362)
T 3snr_A 84 AISNVANEAQIPHIALAPLPITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYI--GY-SDSYGDLWFNDLKKQGE 160 (362)
T ss_dssp HHHHHHHHHTCCEEESSCCCCCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEE--EE-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccEEEecCCccccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEE--ec-CchHHHHHHHHHHHHHH
Confidence 44556778999998753 12445777888889999999999877765 22 33445677777777776
Q ss_pred cCCCC--cccccCC-CCCHHHHHHHHHhHhccCCCC---CCHHHHHHHHHHHHCCCCCCCe
Q 042073 103 NVTQP--LKFLYPS-DVSIKEKIDTIARSYGASGVE---YSEEAEKQIKMYTRQGFSGLPF 157 (225)
Q Consensus 103 ~~~~~--f~~lY~~-~~~i~eKI~~IA~IYGA~~V~---~s~~A~~~l~~~e~~G~~~lPV 157 (225)
+..-+ ....|+. +.+...-++++.. -+.+-|. +...|..-++++.++|+. .|+
T Consensus 161 ~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~~~g~~-~p~ 219 (362)
T 3snr_A 161 AMGLKIVGEERFARPDTSVAGQALKLVA-ANPDAILVGASGTAAALPQTTLRERGYN-GLI 219 (362)
T ss_dssp HTTCEEEEEEEECTTCSCCHHHHHHHHH-HCCSEEEEECCHHHHHHHHHHHHHTTCC-SEE
T ss_pred HcCCEEEEEeecCCCCCCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHHHcCCC-ccE
Confidence 42211 1223433 2333333444332 1233321 246678888999999995 566
No 413
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=23.12 E-value=2.1e+02 Score=21.63 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=27.5
Q ss_pred hhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEE
Q 042073 41 KAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 41 ~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
..-|.|.||. ..++++|+..+.+.+++.|++...+
T Consensus 51 ~~~g~~Kvvl----k~~~e~el~~l~~~a~~~gl~~~~i 85 (121)
T 1wn2_A 51 FREGQKKVVV----KVESEEELFKLKAEAEKLGLPNALI 85 (121)
T ss_dssp HHTTCCEEEE----EESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHCCCcEEEE----ecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3579998874 4578999999999999999973333
No 414
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=23.12 E-value=1.1e+02 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhcCCeEE-EEecCCCCCcHHHH
Q 042073 30 CVNLARHIANTKAYGVNVV-VAVNMFATDSEAEL 62 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvV-VAIN~F~~DT~~Ei 62 (225)
..=+++|++-.+++++||| + ..-|..+|+
T Consensus 103 ~~~F~~ql~lA~e~~lPviSi----H~r~a~~~~ 132 (254)
T 3gg7_A 103 FAVFQHILRRCEDHGGRILSI----HSRRAESEV 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE----ECTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEE----EcCCcHHHH
Confidence 3457899999999999998 6 344555443
No 415
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Probab=23.02 E-value=3.4e+02 Score=22.78 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCeEEEcccc---ccC--chhhHHHH----HHHHHHhhcCCCCccccc--CCCCC--HHHHHHHHHhH
Q 042073 62 LNAVRIAAMAAGAFDAVVCSHH---AHG--GKGAVDLG----IAVQRACENVTQPLKFLY--PSDVS--IKEKIDTIARS 128 (225)
Q Consensus 62 i~~i~~~c~~~g~~~~avs~~w---a~G--G~Ga~~LA----~~Vv~~~e~~~~~f~~lY--~~~~~--i~eKI~~IA~I 128 (225)
++.+.+.+.+.|+...+++..- ..+ .+-+.+++ +.+.++++..+..|..+- +..++ ..+-|++.+ -
T Consensus 60 ~~~~l~~m~~~GV~~~V~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~~~~~a~~el~~~~-~ 138 (334)
T 2hbv_A 60 PAFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEASRAV-A 138 (334)
T ss_dssp HHHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCEEEECCCchhccCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEecCccCHHHHHHHHHHHH-H
Confidence 3445566677888755555321 111 22234444 445555654454455432 23221 223344333 3
Q ss_pred hccCCCCC----------CHHHHHHHHHHHHCCCCCCCeeEe
Q 042073 129 YGASGVEY----------SEEAEKQIKMYTRQGFSGLPFCMA 160 (225)
Q Consensus 129 YGA~~V~~----------s~~A~~~l~~~e~~G~~~lPVCmA 160 (225)
.|..+|.+ ++.....++.++++| +||++=
T Consensus 139 ~g~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~~---lpv~iH 177 (334)
T 2hbv_A 139 AGHLGIQIGNHLGDKDLDDATLEAFLTHCANED---IPILVH 177 (334)
T ss_dssp HTCCCEEEESCBTTBCTTSHHHHHHHHHHHHTT---CCEEEE
T ss_pred cCCeEEEECCCCCCCCCCcHHHHHHHHHHHHCC---CEEEEC
Confidence 45555432 467788889999987 499883
No 416
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=22.97 E-value=34 Score=23.15 Aligned_cols=17 Identities=18% Similarity=0.222 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHH
Q 042073 133 GVEYSEEAEKQIKMYTR 149 (225)
Q Consensus 133 ~V~~s~~A~~~l~~~e~ 149 (225)
.|.||+.|+++|+.+.+
T Consensus 2 ~i~~t~~a~kdl~~l~~ 18 (84)
T 2a6s_A 2 KLIWSEESWDDYLYWQE 18 (84)
T ss_dssp EEEECHHHHHHHHHHHT
T ss_pred eEEECHHHHHHHHHHHH
Confidence 37899999999988853
No 417
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=22.96 E-value=3.7e+02 Score=23.22 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHhhcCCeEEEEecCCCCC----cHHHHHHHHHHHH-----------HcCCCeEEEccccccCchhhH
Q 042073 27 EAGCVNLARHIANTKAYGVNVVVAVNMFATD----SEAELNAVRIAAM-----------AAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 27 ~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~D----T~~Ei~~i~~~c~-----------~~g~~~~avs~~wa~GG~Ga~ 91 (225)
++|+..|.+=++-....||++|-.-- |+++ .++|++.|-+++. +.|++ +-+.---..=.+.-.
T Consensus 44 ~~G~~~l~~i~~~c~~lGI~~lTlYa-FStENwkRp~~EV~~Lm~L~~~~l~~~~~~l~~~~vr-vr~iGd~~~Lp~~l~ 121 (253)
T 3sgv_B 44 KAGAKSVRRAVSFAANNGIEALTLYA-FSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVR-LRIIGDTSRFNSRLQ 121 (253)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEC-C-----------CHHHHHHHHTTHHHHHHHHHHTTCE-EEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEE-EchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCeE-EEEEeehhhCCHHHH
Q ss_pred HHHHHHHHHhhcCCCC---cccccCCCCCHHHHHHHHHh-H
Q 042073 92 DLGIAVQRACENVTQP---LKFLYPSDVSIKEKIDTIAR-S 128 (225)
Q Consensus 92 ~LA~~Vv~~~e~~~~~---f~~lY~~~~~i~eKI~~IA~-I 128 (225)
+..+.+.+...+++.- +-.-|.--+.|.+=+++||+ +
T Consensus 122 ~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v 162 (253)
T 3sgv_B 122 ERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV 162 (253)
T ss_dssp HHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHH
No 418
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=22.92 E-value=85 Score=25.88 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcC---CCeEEEccccccCchhhHHHHHHHHH
Q 042073 31 VNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAG---AFDAVVCSHHAHGGKGAVDLGIAVQR 99 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g---~~~~avs~~wa~GG~Ga~~LA~~Vv~ 99 (225)
+-+.++++-.+++|+|+++=. .+..+++- +.+++.+ .+ +++ || +.|..+.++++++
T Consensus 120 ~~f~~~~~~a~~~~lPv~iH~----~~~~~~~~---~il~~~p~~~~~-~I~--H~---~~g~~~~~~~~~~ 178 (268)
T 1j6o_A 120 RVFVEQIELAGKLNLPLVVHI----RDAYSEAY---EILRTESLPEKR-GVI--HA---FSSDYEWAKKFID 178 (268)
T ss_dssp HHHHHHHHHHHHHTCCEEEEE----ESCHHHHH---HHHHHSCCCSSC-EEE--TT---CCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEe----CchHHHHH---HHHHhcCCCCCC-EEE--Ec---CCCCHHHHHHHHH
Confidence 345667777777888877743 23444432 2233343 33 444 54 3344566655554
No 419
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=22.89 E-value=4.1e+02 Score=23.71 Aligned_cols=142 Identities=18% Similarity=0.192 Sum_probs=75.9
Q ss_pred HHHHHhhcCCeEEEEecCCCCCcHH--------HHHHHHHHHHHcCCCeEEEccc--cccC--chhhHHHH----HHHHH
Q 042073 36 HIANTKAYGVNVVVAVNMFATDSEA--------ELNAVRIAAMAAGAFDAVVCSH--HAHG--GKGAVDLG----IAVQR 99 (225)
Q Consensus 36 HIeNi~~fGvpvVVAIN~F~~DT~~--------Ei~~i~~~c~~~g~~~~avs~~--wa~G--G~Ga~~LA----~~Vv~ 99 (225)
-++.+++.|--+|-++=.|..|+++ .+..|.+.|.+.|.+ + +-+. +..+ ++-..+.| +.|..
T Consensus 115 sve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiP-l-llEil~y~~~~~~~~~~~~a~~~p~~V~~ 192 (332)
T 3iv3_A 115 SIKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIP-F-FLEILTYDETISNNSSVEFAKVKVHKVND 192 (332)
T ss_dssp CHHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCC-E-EEEEEECBTTBSCTTSHHHHTTHHHHHHH
T ss_pred CHHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCc-e-EEEEeccCCCCCCCcchhhhccCHHHHHH
Confidence 3677777777766554444444443 456667778888987 3 3333 3333 34333442 22333
Q ss_pred Hhhc------CCCCcccccCCCCCHHHHHHHHHhHhccCCCCCCHHHH-HHHHHHHHCCCCCCCeeE-eecCCCcCCCCC
Q 042073 100 ACEN------VTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAE-KQIKMYTRQGFSGLPFCM-AKTQHSFSHNAP 171 (225)
Q Consensus 100 ~~e~------~~~~f~~lY~~~~~i~eKI~~IA~IYGA~~V~~s~~A~-~~l~~~e~~G~~~lPVCm-AKTqyS~Sdd~P 171 (225)
++.. .+.=+|.-|+.+.... .-||...+.||.+.. +.+++..+. .++|+-+ +==. | .
T Consensus 193 a~R~~~~~elGaDv~Kve~p~~~~~v-------~g~~~~~~~y~~~ea~~~f~~~~~a--~~~P~v~lsgG~---~---~ 257 (332)
T 3iv3_A 193 AMKVFSAERFGIDVLKVEVPVNMVYV-------EGFAEGEVVYSKEEAAQAFREQEAS--TDLPYIYLSAGV---S---A 257 (332)
T ss_dssp HHHHHTSGGGCCSEEEECCSSCGGGB-------TTTCSSCCCBCHHHHHHHHHHHHHT--CSSCEEEECTTC---C---H
T ss_pred HHHHHhhcCcCCcEEEEecCCChhhh-------cccccccccccHHHHHHHHHHHHhc--CCCCEEEECCCC---C---H
Confidence 3321 2222666676654321 135666778887654 447777665 4788654 3221 1 1
Q ss_pred CCceEEeeEEEeecCCceeeeecc
Q 042073 172 TGFILPIRDVRASIGAGFIYPLVG 195 (225)
Q Consensus 172 ~~f~~~vrdv~~~~GAgFiv~~~G 195 (225)
+.|.=.|++ -+.+||+|--++||
T Consensus 258 ~~fl~~v~~-A~~aGa~f~Gv~~G 280 (332)
T 3iv3_A 258 ELFQETLVF-AHKAGAKFNGVLCG 280 (332)
T ss_dssp HHHHHHHHH-HHHHTCCCCEEEEC
T ss_pred HHHHHHHHH-HHHcCCCcceEEee
Confidence 233323322 45588877777777
No 420
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=22.87 E-value=1.4e+02 Score=25.86 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 57 DSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 57 DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
+++++++.|+++|++.|+. +.+-+++.
T Consensus 218 ~~~~~l~~l~~l~~~~~~~-li~DEv~~ 244 (429)
T 3k28_A 218 PQPGFLEGLREVTEQNGAL-LIFDEVMT 244 (429)
T ss_dssp CCTTHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHcCCE-EEEecccc
Confidence 4789999999999999996 77777775
No 421
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=22.83 E-value=1.5e+02 Score=22.47 Aligned_cols=71 Identities=11% Similarity=-0.007 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhcCC-eEEEEecCCC----------CCcHHHH----HHHHHHHHHcCCCeEEE--------------cc
Q 042073 31 VNLARHIANTKAYGV-NVVVAVNMFA----------TDSEAEL----NAVRIAAMAAGAFDAVV--------------CS 81 (225)
Q Consensus 31 ~NL~~HIeNi~~fGv-pvVVAIN~F~----------~DT~~Ei----~~i~~~c~~~g~~~~av--------------s~ 81 (225)
.||++=|+.+|+.+- +.||.+.-.| ....+.+ +.+++.|++.|+. ++= .+
T Consensus 96 ~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~-~iD~~~~~~~~~~~~~~~D 174 (200)
T 4h08_A 96 KSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIE-VNDLWKVVIDHPEYYAGGD 174 (200)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTCE-EECHHHHHTTCGGGTTTSC
T ss_pred HHHHHHHHHHhhhCCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhhcceE-EEecHHhHhcCHHHhcCCC
Confidence 467777777877542 2333333222 1222333 4567788898985 431 01
Q ss_pred ccccCchhhHHHHHHHHHHhh
Q 042073 82 HHAHGGKGAVDLGIAVQRACE 102 (225)
Q Consensus 82 ~wa~GG~Ga~~LA~~Vv~~~e 102 (225)
..--..+|..-+|+.|.+.++
T Consensus 175 g~Hpn~~Gy~~~A~~i~~~i~ 195 (200)
T 4h08_A 175 GTHPIDAGYSALANQVIKVIK 195 (200)
T ss_dssp SSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 112235677778888777765
No 422
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12
Probab=22.77 E-value=87 Score=25.22 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhcCCeEEE
Q 042073 31 VNLARHIANTKAYGVNVVV 49 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVV 49 (225)
+-+.++++-.+++|+|+++
T Consensus 111 ~~~~~~~~~a~~~~~pv~i 129 (265)
T 1yix_A 111 ESFIHHIQIGRELNKPVIV 129 (265)
T ss_dssp HHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 3466777777777888776
No 423
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.74 E-value=1.4e+02 Score=25.24 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=41.5
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHh--------------------hcCCeEEEEe--cCCCCCcHHHHHHHHHHHHHcCC
Q 042073 17 AYLNENVALVEAGCVNLARHIANTK--------------------AYGVNVVVAV--NMFATDSEAELNAVRIAAMAAGA 74 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~--------------------~fGvpvVVAI--N~F~~DT~~Ei~~i~~~c~~~g~ 74 (225)
+.-++|.+++.+-|..|.+-++..- .||+.++-.+ +-=..=|.++|+.|.+.+++.++
T Consensus 148 ~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v 227 (284)
T 3cx3_A 148 ETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKV 227 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4446788888888888888877642 2455433222 22233456777777777777777
Q ss_pred CeEEEccccc
Q 042073 75 FDAVVCSHHA 84 (225)
Q Consensus 75 ~~~avs~~wa 84 (225)
. +++++...
T Consensus 228 ~-~if~e~~~ 236 (284)
T 3cx3_A 228 K-TIFTESNA 236 (284)
T ss_dssp C-CEEECSSS
T ss_pred C-EEEEeCCC
Confidence 5 66665544
No 424
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=22.70 E-value=3.9e+02 Score=23.38 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=31.8
Q ss_pred HHHHHHHHHhh-cCCeEEEEecCC--CCCcHHHHHHHHHHHHHcCCCeEEEcc
Q 042073 32 NLARHIANTKA-YGVNVVVAVNMF--ATDSEAELNAVRIAAMAAGAFDAVVCS 81 (225)
Q Consensus 32 NL~~HIeNi~~-fGvpvVVAIN~F--~~DT~~Ei~~i~~~c~~~g~~~~avs~ 81 (225)
-+..=|+.+++ .++||.|-+.-. ..++.++...+.+.+++.|+.-+.++.
T Consensus 113 ~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~ 165 (350)
T 3b0p_A 113 RVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHA 165 (350)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEec
Confidence 34444555555 689999966532 234555666677788899997455543
No 425
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=22.69 E-value=2e+02 Score=24.22 Aligned_cols=43 Identities=9% Similarity=-0.079 Sum_probs=30.9
Q ss_pred CeEEEEecC--CCC---CcHHHHHHHHHHHHHcCCCeEEEccccccCch
Q 042073 45 VNVVVAVNM--FAT---DSEAELNAVRIAAMAAGAFDAVVCSHHAHGGK 88 (225)
Q Consensus 45 vpvVVAIN~--F~~---DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~ 88 (225)
..+|+.++. .++ -+.++++.|.++|++.|+. +.+-++|+.+.-
T Consensus 175 ~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~-li~De~~~~~~~ 222 (407)
T 2zc0_A 175 VKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLL-IIEDTAYNFMRY 222 (407)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEECTTTTSBS
T ss_pred ceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCE-EEEECCCccccc
Confidence 345545543 333 3578999999999999996 888888887643
No 426
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=22.66 E-value=1.1e+02 Score=29.78 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCCeEEE-------EecCCCC-------CcHHHHHHHHHHHHHcCCCeEEE
Q 042073 30 CVNLARHIANTKAYGVNVVV-------AVNMFAT-------DSEAELNAVRIAAMAAGAFDAVV 79 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVV-------AIN~F~~-------DT~~Ei~~i~~~c~~~g~~~~av 79 (225)
.+-|++.|+-|..+++++.- .|..||. =|.+|+..|.++|+++|+. ++.
T Consensus 101 ~~~ik~~id~ma~~KlN~lh~Hl~D~~ei~~~P~l~~~~~~YT~~di~eiv~yA~~rgI~-VIP 163 (627)
T 2epl_X 101 LSSAKKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDMS-FVP 163 (627)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSCBCCTTCTTTTTTTTCBCHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeecccccCCCcccCccCCCcCHHHHHHHHHHHHHcCCE-EEE
Confidence 35678899999999999884 4454553 3899999999999999996 654
No 427
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=22.50 E-value=98 Score=27.41 Aligned_cols=18 Identities=0% Similarity=-0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHhh-cCCeEEE
Q 042073 32 NLARHIANTKA-YGVNVVV 49 (225)
Q Consensus 32 NL~~HIeNi~~-fGvpvVV 49 (225)
=+++|++-.++ +++|||+
T Consensus 155 ~F~~ql~lA~e~~~lPvii 173 (325)
T 3ipw_A 155 GYRTLSILHQKYPYLPFFF 173 (325)
T ss_dssp HHHHTHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHhhCCeEEE
Confidence 36788888888 8888876
No 428
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=22.50 E-value=3.1e+02 Score=23.66 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHhHHHHHHHHHHHhhcCCeEEEEecC-CC----C-CcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 26 VEAGCVNLARHIANTKAYGVNVVVAVNM-FA----T-DSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 26 l~~G~~NL~~HIeNi~~fGvpvVVAIN~-F~----~-DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
.+.-++.+.+.|+.+++.|+.|.+.|=. |. + -+++++..+.+.+.+.|+..+.+++-
T Consensus 117 ~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT 179 (307)
T 1ydo_A 117 TSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDT 179 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3445677788899999999998765543 32 1 23566666666667899987888876
No 429
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=22.31 E-value=1.4e+02 Score=26.94 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCeEEEEecC--CCCCcHHHHHHHHHHHHHcCCCeEEEccccccC
Q 042073 34 ARHIANTKAYGVNVVVAVNM--FATDSEAELNAVRIAAMAAGAFDAVVCSHHAHG 86 (225)
Q Consensus 34 ~~HIeNi~~fGvpvVVAIN~--F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~G 86 (225)
...++.++++ ..+.|.+.. +..=| +++-.-.+.+++.|+. +.+..+.-+|
T Consensus 213 ~e~l~~L~~~-~~v~Isl~~~~~~ei~-~~v~~ai~~L~~aGi~-v~i~~vll~G 264 (416)
T 2a5h_A 213 PELVNMLKKY-HPVWLNTHFNHPNEIT-EESTRACQLLADAGVP-LGNQSVLLRG 264 (416)
T ss_dssp HHHHHHHGGG-CSEEEEECCCSGGGCC-HHHHHHHHHHHHTTCC-EEEEEECCTT
T ss_pred HHHHHHHHhc-CcEEEEEecCCHHHHh-HHHHHHHHHHHHcCCE-EEEEEEEECC
Confidence 4556666665 444444432 11112 2222233334557775 6666666554
No 430
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=22.28 E-value=1.1e+02 Score=21.72 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHhHHHHHHHHHHHhhcCCeEEEEecC-----CCCCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 23 VALVEAGCVNLARHIANTKAYGVNVVVAVNM-----FATDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 23 ~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~-----F~~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
.+.+...|.|...+++... +..+.|.+|- |..|+ .+....+...+.|+. +.+|..
T Consensus 10 ~~~~~~al~~~~n~~~~~~--~~~v~vv~~g~gv~~~~~~~--~~~~~i~~l~~~gV~-~~~C~~ 69 (108)
T 2pd2_A 10 FDKVPQALRSVINLYNDIK--DAEIEVVLHQSAIKALLKDS--DTRSIIEDLIKKNIL-IVGCEN 69 (108)
T ss_dssp GGGHHHHHHHHHHHHHHST--TCEEEEEECGGGGGGGBTTC--TTHHHHHHHHHTTCE-EEEEHH
T ss_pred hHHHHHHHHHHHHHHhhCC--CCeEEEEEcChHHHHHHcCc--hHHHHHHHHHHCcCE-EEecHH
Confidence 3456778888888887633 7888887763 44443 344444445568995 999965
No 431
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=22.24 E-value=2.1e+02 Score=22.79 Aligned_cols=43 Identities=23% Similarity=0.178 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhhcCC--eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEcc
Q 042073 29 GCVNLARHIANTKAYGV--NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCS 81 (225)
Q Consensus 29 G~~NL~~HIeNi~~fGv--pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~ 81 (225)
|-+=|++-|+.+++.|. .+||+.+ . ++ +.+++.+.|+. +....
T Consensus 27 Gkpli~~~i~~~~~~~~~~~ivv~~~-----~-~~---i~~~~~~~g~~-~~~~~ 71 (229)
T 1qwj_A 27 GVPLIGWVLRAALDAGVFQSVWVSTD-----H-DE---IENVAKQFGAQ-VHRRS 71 (229)
T ss_dssp TEEHHHHHHHHHHHHTCCSEEEEEES-----C-HH---HHHHHHHTTCE-EEECC
T ss_pred CEEHHHHHHHHHHhCCCcCEEEEECC-----h-HH---HHHHHHHcCCE-EEeCh
Confidence 56677888999988773 6777662 2 23 45667778885 65443
No 432
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4
Probab=22.22 E-value=2.3e+02 Score=25.86 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHHHhhcCCeEEEEecCCCCC-cHHHHHHHHHHHH------HcCCCeEEEcccc
Q 042073 28 AGCVNLARHIANTKAYGVNVVVAVNMFATD-SEAELNAVRIAAM------AAGAFDAVVCSHH 83 (225)
Q Consensus 28 ~G~~NL~~HIeNi~~fGvpvVVAIN~F~~D-T~~Ei~~i~~~c~------~~g~~~~avs~~w 83 (225)
.||..+.+++ ++|+.|+.|.=|=+.++ .+.-|+.++++.. +.|++ +.=-.+|
T Consensus 304 ~gl~~~L~~~---~rY~~Pi~ITENG~~~~dD~~Ri~yl~~hl~~~~~Ai~dGv~-v~GY~~W 362 (423)
T 1vff_A 304 KGIYMALKKA---SRYGRPLYITENGIATLDDEWRVEFIIQHLQYVHKAIEDGLD-VRGYFYW 362 (423)
T ss_dssp HHHHHHHHHH---GGGCSCEEEEECCCCCSCHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEE
T ss_pred HHHHHHHHHH---HHcCCCEEEEeCCCCCCccHHHHHHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 5788888877 78999999999998764 3567777776643 46886 5433344
No 433
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=22.20 E-value=4.1e+02 Score=23.58 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=45.8
Q ss_pred ccHHHHHH---h-HHHHHHHHHHHhhc--CCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhH
Q 042073 21 ENVALVEA---G-CVNLARHIANTKAY--GVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAV 91 (225)
Q Consensus 21 eN~~al~~---G-~~NL~~HIeNi~~f--GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~ 91 (225)
-|+.+|+. | ..-+..-|.-+++- +.++=|.|--=.-.+++.|....+.|.+.|+..+--|+.|..||.--.
T Consensus 121 inig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~~~gAT~e 197 (297)
T 4eiv_A 121 IDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMF 197 (297)
T ss_dssp CCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHH
T ss_pred eeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHH
Confidence 36667766 4 44555556666652 455555554322233555778889999999986678899988876433
No 434
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Probab=22.20 E-value=89 Score=26.26 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCeEEEE--ec---------------------CCC--CCcHHHHHHHHHHHHHcCCCeEEEccc
Q 042073 31 VNLARHIANTKAYGVNVVVA--VN---------------------MFA--TDSEAELNAVRIAAMAAGAFDAVVCSH 82 (225)
Q Consensus 31 ~NL~~HIeNi~~fGvpvVVA--IN---------------------~F~--~DT~~Ei~~i~~~c~~~g~~~~avs~~ 82 (225)
..+++.++.|+..|+++|=. .+ .|. .+.-+-++.+.++|.+.|+. +.+.-|
T Consensus 36 ~~~~~~l~~~k~~G~N~vR~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~Gi~-vild~~ 111 (344)
T 1qnr_A 36 ADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLK-LIIPFV 111 (344)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCE-EEEESC
T ss_pred HHHHHHHHHHHHcCCCEEEEccccCCCCCCCCCceeeeecCCCCcccccCHHHHHHHHHHHHHHHHCCCE-EEEEec
Confidence 46788999999999999833 12 011 33467788999999999996 766643
No 435
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=22.20 E-value=1.5e+02 Score=26.62 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=26.2
Q ss_pred hcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 42 AYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 42 ~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
..+.|+|+++|+-..+..+.++.+++...+.|..
T Consensus 212 ~~~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~ 245 (397)
T 1wxq_A 212 RVNKPMVIAANKADAASDEQIKRLVREEEKRGYI 245 (397)
T ss_dssp HHHSCEEEEEECGGGSCHHHHHHHHHHHHHTTCE
T ss_pred ccCCCEEEEEeCccccchHHHHHHHHHHhhcCCc
Confidence 4679999999998766677788887776655764
No 436
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=22.12 E-value=81 Score=29.75 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 32 NLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
.-++..+-++++|+|.++.||+..-...+=.+.+.+.-..+|..
T Consensus 140 qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~ 183 (548)
T 3vqt_A 140 QTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIE 183 (548)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSE
T ss_pred ccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCc
Confidence 34555667788999999999998764333333344444456664
No 437
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=22.03 E-value=2.1e+02 Score=24.14 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=43.3
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHhh--cCCeEEEEe--------------------cCCCCCcHHHHHHHHHHHHHcCC
Q 042073 17 AYLNENVALVEAGCVNLARHIANTKA--YGVNVVVAV--------------------NMFATDSEAELNAVRIAAMAAGA 74 (225)
Q Consensus 17 ~l~~eN~~al~~G~~NL~~HIeNi~~--fGvpvVVAI--------------------N~F~~DT~~Ei~~i~~~c~~~g~ 74 (225)
+.-++|.+++.+-|..|.+-++..-. =+.++||.= +-=..=|.++|+.|.+.+++.++
T Consensus 145 ~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v 224 (284)
T 2prs_A 145 AKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKA 224 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 44567888888888888888775421 133344332 22234567788888888888888
Q ss_pred CeEEEccccc
Q 042073 75 FDAVVCSHHA 84 (225)
Q Consensus 75 ~~~avs~~wa 84 (225)
. +++.+...
T Consensus 225 ~-~if~e~~~ 233 (284)
T 2prs_A 225 T-CVFAEPQF 233 (284)
T ss_dssp C-EEEECTTS
T ss_pred C-EEEEeCCC
Confidence 6 76666544
No 438
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=21.93 E-value=1.6e+02 Score=24.47 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHh-hcCCeEE-EEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCC
Q 042073 29 GCVNLARHIANTK-AYGVNVV-VAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 106 (225)
Q Consensus 29 G~~NL~~HIeNi~-~fGvpvV-VAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~ 106 (225)
++..+.+.++.++ +.+++++ |.+|++... +.+.++++..|.+ +. ... .. -..+.++...+
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~~~~~~~~~g~~-v~-~~I-p~--------~~~v~~a~~~g-- 257 (307)
T 3end_A 196 AMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DEVDRFCKETNFR-RL-AHM-PD--------LDAIRRSRLKK-- 257 (307)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HHHHHHHHHHTCC-EE-EEE-CC--------CHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HHHHHHHHHcCCC-ce-eeC-Cc--------cHHHHHHHHcC--
Confidence 3444444444443 3788876 899999764 2355666677876 43 222 11 12333333322
Q ss_pred CcccccC--CC---CCHHHHHHHHHh-HhccCCC
Q 042073 107 PLKFLYP--SD---VSIKEKIDTIAR-SYGASGV 134 (225)
Q Consensus 107 ~f~~lY~--~~---~~i~eKI~~IA~-IYGA~~V 134 (225)
+++++ .. .+..+-++.+|+ +.+-...
T Consensus 258 --~~v~~~~p~~~~s~~~~~~~~la~~l~~~~~~ 289 (307)
T 3end_A 258 --KTLFEMDEDQDVLAARAEYIRLAESLWRGLDP 289 (307)
T ss_dssp --CCTTTSCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred --CCeEeeCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 33433 33 347788999999 7775544
No 439
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=21.92 E-value=3.5e+02 Score=23.42 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=66.8
Q ss_pred ccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCC----cHHHHHHHHHH-----------HHHcCCCeEEEcccccc
Q 042073 21 ENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATD----SEAELNAVRIA-----------AMAAGAFDAVVCSHHAH 85 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~D----T~~Ei~~i~~~-----------c~~~g~~~~avs~~wa~ 85 (225)
+-.+.=++|+..|.+=++-...+||+.| .+=.|+++ .++|++.|-++ ..+.|++ +-+.---..
T Consensus 45 ~r~~GH~~G~~~~~~iv~~c~~lGI~~l-TlYaFStENwkRp~~EV~~Lm~L~~~~l~~~~~~l~~~~vr-vr~iGd~~~ 122 (256)
T 4h8e_A 45 PRIKGHYEGMQTIKKITRIASDIGVKYL-TLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVK-VETIGFTDK 122 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSEE-EEEEEETTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEESCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEE-EEEEEchhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCeE-EEEecCccc
Confidence 3456779999999999999999999975 56667776 58898766433 2356775 544333333
Q ss_pred CchhhHHHHHHHHHHhhcCCC---CcccccCCCCCHHHHHHHHHh
Q 042073 86 GGKGAVDLGIAVQRACENVTQ---PLKFLYPSDVSIKEKIDTIAR 127 (225)
Q Consensus 86 GG~Ga~~LA~~Vv~~~e~~~~---~f~~lY~~~~~i~eKI~~IA~ 127 (225)
=.+.-.+..+.+.+...+++. ++-.-|.--+.|.+=+++||+
T Consensus 123 Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~ 167 (256)
T 4h8e_A 123 LPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFD 167 (256)
T ss_dssp SCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 333334444444444332221 144667777788888888888
No 440
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=21.90 E-value=1.6e+02 Score=26.18 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=47.0
Q ss_pred ccHHHHHHhHHHHHHHHHHHhhcC-------CeEEEEecCCCCC------------------cHHHH-------------
Q 042073 21 ENVALVEAGCVNLARHIANTKAYG-------VNVVVAVNMFATD------------------SEAEL------------- 62 (225)
Q Consensus 21 eN~~al~~G~~NL~~HIeNi~~fG-------vpvVVAIN~F~~D------------------T~~Ei------------- 62 (225)
+|...+-.|+. .||+++|-.|+ ..+|-.+|.+..+ |-+|+
T Consensus 9 ~~tkviV~G~~--Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~DlaVi~ 86 (334)
T 3mwd_B 9 RHTKAIVWGMQ--TRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDVLINF 86 (334)
T ss_dssp TTCCEEEESCC--HHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTCCEEEEC
T ss_pred CCCeEEEECCc--hHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCCCcEEEEe
Confidence 44444445554 56999998885 8888888877652 33332
Q ss_pred -------HHHHHHHHHcCCCeEEE-ccccccCchhhHHHHHHHHHHhhc
Q 042073 63 -------NAVRIAAMAAGAFDAVV-CSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 63 -------~~i~~~c~~~g~~~~av-s~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+.+.+.|.+.|++.+++ +++|.+ ++.+++.+.+.+
T Consensus 87 vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e------~~~~~l~~~a~~ 129 (334)
T 3mwd_B 87 ASLRSAYDSTMETMNYAQIRTIAIIAEGIPE------ALTRKLIKKADQ 129 (334)
T ss_dssp CCTTTHHHHHHHHTTSTTCCEEEECCSCCCH------HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCEEEEECCCCCH------HHHHHHHHHHHH
Confidence 34556666678864444 677776 455666666653
No 441
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=21.88 E-value=1.4e+02 Score=27.24 Aligned_cols=90 Identities=9% Similarity=0.015 Sum_probs=52.8
Q ss_pred HHHhhcCCeEEEEecCCCC------------CcHHH-HHHHHHHHH----HcCC--CeEE-EccccccCchhhHHHHHHH
Q 042073 38 ANTKAYGVNVVVAVNMFAT------------DSEAE-LNAVRIAAM----AAGA--FDAV-VCSHHAHGGKGAVDLGIAV 97 (225)
Q Consensus 38 eNi~~fGvpvVVAIN~F~~------------DT~~E-i~~i~~~c~----~~g~--~~~a-vs~~wa~GG~Ga~~LA~~V 97 (225)
..+.+.+.|+++++|+-.- .+.++ ++.|+++++ +.|. ..+. +|.| ..-+.|..+|++.+
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh-~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNK-NVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTT-CTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecC-cCCccCHHHHHHHH
Confidence 3445578999999997321 13333 456677763 4442 1233 4554 45568899999999
Q ss_pred HHHhhcCCCCccc---ccCCC-CCHHHHHHHHHh-Hh
Q 042073 98 QRACENVTQPLKF---LYPSD-VSIKEKIDTIAR-SY 129 (225)
Q Consensus 98 v~~~e~~~~~f~~---lY~~~-~~i~eKI~~IA~-IY 129 (225)
.+.+.+.+. +.| +.+.+ .++++|-+.+.+ |-
T Consensus 248 ~~~Lpeg~~-~~~~~~l~~~~~~~~e~k~~~~~~~i~ 283 (413)
T 1tq4_A 248 ISDLPIYKR-HNFMVSLPNITDSVIEKKRQFLKQRIW 283 (413)
T ss_dssp HHHSCGGGH-HHHHHHSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHhCccchh-hHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 998854321 222 22212 357777766666 44
No 442
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=21.86 E-value=3.2e+02 Score=24.99 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCeEEEE-ec--CCCC------------------CcHHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 33 LARHIANTKAYGVNVVVA-VN--MFAT------------------DSEAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVA-IN--~F~~------------------DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
+...++.|+..|+++|=. +. +|.. +.-+-++.+.++|.+.|+. +.+.-|...|+
T Consensus 86 ~~~~i~~ik~~G~N~VRipi~~~~l~~~~~p~~~~~~~np~~~~~~~l~~ld~vV~~a~~~Gi~-VIldlH~~~~~ 160 (458)
T 3qho_A 86 WEDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIF-VLLDYHRIGCT 160 (458)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETGGGSTTCCCCCCCTTTCGGGTTCCHHHHHHHHHHHHHHTTCE-EEEEEEESSSS
T ss_pred HHHHHHHHHHcCCCEEEEeeeHHHhCCCCCccccccccCccccchHHHHHHHHHHHHHHHCCCE-EEEecccCCCc
Confidence 467899999999988733 32 3211 2346788899999999996 88988887764
No 443
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=21.86 E-value=1.2e+02 Score=23.95 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCeEEEEecC---CCCCcHHHHHHHHH
Q 042073 33 LARHIANTKAYGVNVVVAVNM---FATDSEAELNAVRI 67 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~---F~~DT~~Ei~~i~~ 67 (225)
+.+|++.++..++.++..=.. +.-||.++++.+..
T Consensus 146 ~~~~l~~~~~~~~~~~~~~~~~~~~DVDTpeDl~~~~~ 183 (211)
T 2i5e_A 146 FLTHCSIATDSGQDFEIYDSFMAGTDIDEPEDLVELLI 183 (211)
T ss_dssp HHHHHHHHHTTTCCEEECCCTTTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEecccccccCCCCHHHHHHHHH
Confidence 788898888888887764334 57799999976543
No 444
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=21.82 E-value=1.9e+02 Score=24.87 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=14.7
Q ss_pred CcHHHHHHH---HHHHHHcCCCeEEEcc
Q 042073 57 DSEAELNAV---RIAAMAAGAFDAVVCS 81 (225)
Q Consensus 57 DT~~Ei~~i---~~~c~~~g~~~~avs~ 81 (225)
.++.|.+.+ .+++++.|.+ +.+..
T Consensus 142 ~~~~q~~~f~~q~~lA~~~glP-v~iH~ 168 (330)
T 2ob3_A 142 ATPFQELVLKAAARASLATGVP-VTTHT 168 (330)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCC-EEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhCCe-EEEEC
Confidence 356775544 4556688886 65543
No 445
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=21.59 E-value=55 Score=22.26 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHCCC
Q 042073 133 GVEYSEEAEKQIKMYTRQGF 152 (225)
Q Consensus 133 ~V~~s~~A~~~l~~~e~~G~ 152 (225)
.|.||+.|+++++++.+.+.
T Consensus 3 ~i~~t~~a~kdlk~l~~~~~ 22 (88)
T 1z8m_A 3 KLNLKKSFQKDFDKLLLNGF 22 (88)
T ss_dssp BCCBCHHHHHHHHHHHTTTC
T ss_pred eEEECHHHHHHHHHHHHcCc
Confidence 48899999999999987654
No 446
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=21.38 E-value=35 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHh---HhccCCCCCCHHHHH
Q 042073 115 DVSIKEKIDTIAR---SYGASGVEYSEEAEK 142 (225)
Q Consensus 115 ~~~i~eKI~~IA~---IYGA~~V~~s~~A~~ 142 (225)
++.+.+||+.|.. .=||++|.||..+--
T Consensus 9 s~~v~~~I~~iVe~r~qeGA~dvs~Ssv~sm 39 (52)
T 3omy_A 9 NNNVYEQITDLVTIRKQEGIEEASLSNVSSM 39 (52)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccccHHHHHHH
Confidence 4468899999887 789999999987653
No 447
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=21.35 E-value=1.6e+02 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 57 DSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 57 DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
.++++++.|+++|++.|+. +.+-+++.
T Consensus 220 ~~~~~l~~l~~l~~~~~il-lI~DEv~~ 246 (434)
T 3l44_A 220 PKPGFLEKVNELVHEAGAL-VIYDEVIT 246 (434)
T ss_dssp CCTTHHHHHHHHHHTTTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHcCCE-EEEecccc
Confidence 3889999999999999996 77777765
No 448
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=21.35 E-value=3.2e+02 Score=23.40 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=36.1
Q ss_pred HHHHH-hhcCCeEE-EEecC----CCCC--cHHHHHHHHHHHHHcCCCeEEEccccccCch
Q 042073 36 HIANT-KAYGVNVV-VAVNM----FATD--SEAELNAVRIAAMAAGAFDAVVCSHHAHGGK 88 (225)
Q Consensus 36 HIeNi-~~fGvpvV-VAIN~----F~~D--T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~ 88 (225)
.++.| ++.|+++| +.++- +..| .-+.++.+.++|.+.|+. +.+.-|+..||.
T Consensus 73 ~~~~l~~~~G~N~VRi~~~~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-VilD~H~~~~~~ 132 (327)
T 3pzt_A 73 SLKWLRDDWGITVFRAAMYTADGGYIDNPSVKNKVKEAVEAAKELGIY-VIIDWHILNDGN 132 (327)
T ss_dssp HHHHHHHHTCCSEEEEEEESSTTSTTTCGGGHHHHHHHHHHHHHHTCE-EEEEEECSSSCS
T ss_pred HHHHHHHhcCCCEEEEEeEECCCCcccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCC
Confidence 46667 56888876 33432 2222 247788899999999996 888888877764
No 449
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=21.29 E-value=1.6e+02 Score=22.48 Aligned_cols=9 Identities=11% Similarity=-0.042 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 042073 60 AELNAVRIA 68 (225)
Q Consensus 60 ~Ei~~i~~~ 68 (225)
.|+..+.++
T Consensus 69 ~el~~l~~l 77 (179)
T 3ixr_A 69 TEGLEFNLL 77 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 450
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=21.17 E-value=2e+02 Score=21.48 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=26.1
Q ss_pred hhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Q 042073 41 KAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 41 ~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
..-|.|.||. ..++++|+..+.+.+++.|++
T Consensus 45 ~~~g~~kivl----k~~~e~~l~~l~~~a~~~gl~ 75 (115)
T 2zv3_A 45 LREGQKKVVV----KVNSEKELIDIYNKARSEGLP 75 (115)
T ss_dssp HHTTCCEEEE----EESSHHHHHHHHHHHHHHTCC
T ss_pred HHCCCeEEEE----ecCCHHHHHHHHHHHHHcCCC
Confidence 4579998884 356799999999999999997
No 451
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=21.16 E-value=1e+02 Score=26.57 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcCCeEEE
Q 042073 30 CVNLARHIANTKAYGVNVVV 49 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGvpvVV 49 (225)
..=+++|++-.+++|+||++
T Consensus 113 ~~~F~~ql~lA~e~~lPv~i 132 (287)
T 3rcm_A 113 EKALEAQLTLAAQLRLPVFL 132 (287)
T ss_dssp HHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhCCCEEE
Confidence 34577888888888888887
No 452
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=21.11 E-value=2e+02 Score=24.32 Aligned_cols=50 Identities=6% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhh--cCCeEEE-EecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 31 VNLARHIANTKA--YGVNVVV-AVNMFATDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 31 ~NL~~HIeNi~~--fGvpvVV-AIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
+...+=|+.+++ -|+.+-+ .|=-||.+|+++++...+++++.+...+.+.
T Consensus 139 e~~~~~i~~l~~~~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~ 191 (304)
T 2qgq_A 139 EELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAF 191 (304)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 344455666666 4665422 2335899999999999999999998644333
No 453
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=21.01 E-value=3.7e+02 Score=22.55 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=52.3
Q ss_pred HHHHHHHHh-hc--CCeEEEEecCCCCCcHHHHHHHHHHHHHcCCC-eEEEcc--ccccCch---hhHHHHHHHHHHhhc
Q 042073 33 LARHIANTK-AY--GVNVVVAVNMFATDSEAELNAVRIAAMAAGAF-DAVVCS--HHAHGGK---GAVDLGIAVQRACEN 103 (225)
Q Consensus 33 L~~HIeNi~-~f--GvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~-~~avs~--~wa~GG~---Ga~~LA~~Vv~~~e~ 103 (225)
+.++++..+ .+ +.|++|-|. ..+.++.....+.+.+.|+. -+.++= -..+|+. +..+...++++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~p~~~~i~---g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~ 155 (311)
T 1jub_A 79 YLDYVLKNQKENAQEGPIFFSIA---GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHHHHTCSSSCCEEEEC---CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCEEEEcC---CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 334444444 46 889888775 45677777777888888875 344421 1114432 245566677776653
Q ss_pred CC-CC--cccccCCCCCHHHHHHHHHh-H--hccCCCC
Q 042073 104 VT-QP--LKFLYPSDVSIKEKIDTIAR-S--YGASGVE 135 (225)
Q Consensus 104 ~~-~~--f~~lY~~~~~i~eKI~~IA~-I--YGA~~V~ 135 (225)
.. -+ +| ++. +.+.+ -+..+|+ . +|++.|.
T Consensus 156 ~~~~Pv~vK-i~~-~~~~~-~~~~~a~~~~~~G~d~i~ 190 (311)
T 1jub_A 156 FFTKPLGVK-LPP-YFDLV-HFDIMAEILNQFPLTYVN 190 (311)
T ss_dssp TCCSCEEEE-ECC-CCSHH-HHHHHHHHHTTSCCCEEE
T ss_pred hcCCCEEEE-ECC-CCCHH-HHHHHHHHHHHcCCcEEE
Confidence 21 11 22 222 23444 3555565 3 4777654
No 454
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=20.97 E-value=86 Score=26.22 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 57 DSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 57 DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
+++++++.|.++|++.|+. +.+-++++
T Consensus 190 ~~~~~l~~i~~~~~~~~~~-li~De~~~ 216 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVL-LIIDEVQT 216 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHhCCE-EEEecccc
Confidence 8899999999999999996 77777776
No 455
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=20.93 E-value=1.1e+02 Score=25.69 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEccccccCc
Q 042073 59 EAELNAVRIAAMAAGAFDAVVCSHHAHGG 87 (225)
Q Consensus 59 ~~Ei~~i~~~c~~~g~~~~avs~~wa~GG 87 (225)
.++++.|.++|++.|+. +.+-++|+.++
T Consensus 183 ~~~l~~i~~~~~~~~~~-li~De~~~~~~ 210 (391)
T 4dq6_A 183 KDELKKLGDICLKHNVK-IISDEIHSDII 210 (391)
T ss_dssp HHHHHHHHHHHHHTTCE-EEEECTTTTCB
T ss_pred HHHHHHHHHHHHHcCCE-EEeeccccccc
Confidence 38899999999999996 88888887753
No 456
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=20.88 E-value=18 Score=20.83 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=10.7
Q ss_pred ccccccHHHHHHh
Q 042073 17 AYLNENVALVEAG 29 (225)
Q Consensus 17 ~l~~eN~~al~~G 29 (225)
+|.+||+.-|++|
T Consensus 4 el~kenvqplrqg 16 (26)
T 4ggd_C 4 ELSKENVQPLRQG 16 (26)
T ss_pred ccchhccchhhcc
Confidence 4566999999988
No 457
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=20.86 E-value=2.2e+02 Score=24.17 Aligned_cols=12 Identities=17% Similarity=-0.125 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHH
Q 042073 137 SEEAEKQIKMYT 148 (225)
Q Consensus 137 s~~A~~~l~~~e 148 (225)
|-.|.+--+.+.
T Consensus 168 SGTA~~~ae~i~ 179 (273)
T 1dih_A 168 SGTALAMGEAIA 179 (273)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666664
No 458
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=20.86 E-value=72 Score=27.80 Aligned_cols=11 Identities=9% Similarity=0.474 Sum_probs=5.3
Q ss_pred CCeEEEEecCC
Q 042073 44 GVNVVVAVNMF 54 (225)
Q Consensus 44 GvpvVVAIN~F 54 (225)
|.+.|=-+|-+
T Consensus 110 Ga~iINdvsg~ 120 (282)
T 1aj0_A 110 GAHIINDIRSL 120 (282)
T ss_dssp TCCEEEETTTT
T ss_pred CCCEEEECCCC
Confidence 55544444444
No 459
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=20.78 E-value=2.9e+02 Score=24.55 Aligned_cols=66 Identities=15% Similarity=0.011 Sum_probs=48.5
Q ss_pred HHhhcCCeEEEEecCCCCCcH-HHHHHHHHHHHHcCCCeEEEccccccCch-hhHHHHHHHHHHhhcC
Q 042073 39 NTKAYGVNVVVAVNMFATDSE-AELNAVRIAAMAAGAFDAVVCSHHAHGGK-GAVDLGIAVQRACENV 104 (225)
Q Consensus 39 Ni~~fGvpvVVAIN~F~~DT~-~Ei~~i~~~c~~~g~~~~avs~~wa~GG~-Ga~~LA~~Vv~~~e~~ 104 (225)
-+++|++--||-...+.=|+. -|...+++.+++.|++-..+..-+.++.. +-..=-++.+++++.+
T Consensus 308 ~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~giP~l~ie~D~~~~~~~q~~TRieAF~Eml~~~ 375 (385)
T 3o3m_B 308 EVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIEDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMMSLA 375 (385)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHHHHTTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTC--
T ss_pred HHHhCCCCEEEEeccCCCCccHhhHHHHHHHHHHCCCCEEEEEecCCCCChHHHHHHHHHHHHHHHHh
Confidence 446799998888887766665 57778888899999987777777777765 4445567778887653
No 460
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=20.77 E-value=2.3e+02 Score=23.49 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEccccccCch
Q 042073 58 SEAELNAVRIAAMAAGAFDAVVCSHHAHGGK 88 (225)
Q Consensus 58 T~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~ 88 (225)
+.++++.|.++|++.|+. +.+-++|+.++-
T Consensus 174 ~~~~l~~l~~~~~~~~~~-li~De~~~~~~~ 203 (383)
T 3kax_A 174 KKEELTKLGSLCTKYNVI-VVADEIHSDIIY 203 (383)
T ss_dssp CHHHHHHHHHHHHHHTCE-EEEECTTTTCBC
T ss_pred CHHHHHHHHHHHHHCCCE-EEEEcccccccc
Confidence 468999999999999996 888888876543
No 461
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=20.73 E-value=2.8e+02 Score=21.98 Aligned_cols=43 Identities=21% Similarity=0.114 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCCeEEEEecCCC---CCcHHHHHHHHHHHHHcCCC
Q 042073 33 LARHIANTKAYGVNVVVAVNMFA---TDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 33 L~~HIeNi~~fGvpvVVAIN~F~---~DT~~Ei~~i~~~c~~~g~~ 75 (225)
+..-++.+++.|..-|=.-...+ ..++++++.+++.+++.|+.
T Consensus 21 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 66 (272)
T 2q02_A 21 IEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLE 66 (272)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCe
Confidence 44455666666666544332211 11235556666666666664
No 462
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=20.72 E-value=1.1e+02 Score=27.20 Aligned_cols=44 Identities=32% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCeEEEEecC--C--------CCCcHHHHHHHHHHHHHcCCC
Q 042073 32 NLARHIANTKAYGVNVVVAVNM--F--------ATDSEAELNAVRIAAMAAGAF 75 (225)
Q Consensus 32 NL~~HIeNi~~fGvpvVVAIN~--F--------~~DT~~Ei~~i~~~c~~~g~~ 75 (225)
-|.+|++.++.+|.|+.+.+-| | +.|....--++.-+|..+|+.
T Consensus 231 ~ll~~l~~l~~lg~PvL~G~SrKsfig~~~g~~~~~r~~~t~a~~~~a~~~Ga~ 284 (318)
T 2vp8_A 231 LLLRHVADLVMTGWPVLMALSNKDVVGETLGVDLTERLEGTLAATALAAAAGAR 284 (318)
T ss_dssp HHHHTHHHHHTTSSCBEECCC---------------CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCcchhhhhhcCCChHHhHHHHHHHHHHHHHCCCe
Confidence 3557788888999999999975 4 334555555567778899997
No 463
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=20.57 E-value=1.7e+02 Score=25.58 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=28.9
Q ss_pred eEEEEecCC------CCCcHHHHHHHHHHHHHcCCCeEEEccccc
Q 042073 46 NVVVAVNMF------ATDSEAELNAVRIAAMAAGAFDAVVCSHHA 84 (225)
Q Consensus 46 pvVVAIN~F------~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa 84 (225)
+.+|.+|-. ..+++++++.|+++|++.|+. +++-+++.
T Consensus 202 ~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~-lI~DEv~~ 245 (453)
T 2cy8_A 202 IAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGAL-FILDEVIS 245 (453)
T ss_dssp EEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCE-EEEECTTT
T ss_pred EEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCE-EEEecCcc
Confidence 345556532 237899999999999999996 87777765
No 464
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=20.55 E-value=1.2e+02 Score=23.98 Aligned_cols=86 Identities=12% Similarity=0.029 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcCC---eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCC
Q 042073 30 CVNLARHIANTKAYGV---NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 106 (225)
Q Consensus 30 ~~NL~~HIeNi~~fGv---pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~ 106 (225)
+..+.+.++.++++|. .+-+.+|++...+....+.++ +..|.+ +.-.-.+. -+.+.++....
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~---~~~~~~-v~~~ip~~---------~~~~~~a~~~g-- 219 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNSRITSDEIE---KVIGRP-ISKRIPQD---------EDAMQESLLSG-- 219 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHH---HHHTSC-EEEEECCC---------HHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCCHHHHH---HHhCCC-eEEECCCC---------hHHHHHHHHcC--
Confidence 4556666777777774 377899999877654333333 346775 43222221 11333333322
Q ss_pred CcccccCCCCCHHHHHHHHHh-Hhc
Q 042073 107 PLKFLYPSDVSIKEKIDTIAR-SYG 130 (225)
Q Consensus 107 ~f~~lY~~~~~i~eKI~~IA~-IYG 130 (225)
..-+.|..+.+..+-++++|+ +-|
T Consensus 220 ~~v~~~~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 220 QSVLKVAPKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp SCHHHHCTTSHHHHHHHHHHHCC--
T ss_pred CCccccCCCCHHHHHHHHHHHHHhC
Confidence 112345556677888888887 543
No 465
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=20.29 E-value=3.2e+02 Score=22.61 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=28.2
Q ss_pred HhHHHHHHHH-HHHhhcCC-eEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073 28 AGCVNLARHI-ANTKAYGV-NVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC 80 (225)
Q Consensus 28 ~G~~NL~~HI-eNi~~fGv-pvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs 80 (225)
.|-+=|.+-+ +.+++.++ .+||+.+ | + .+.++|.+.|+. +...
T Consensus 24 ~GkPli~~~i~~~~~~~~~~~vvVvt~----~--~---~i~~~~~~~g~~-v~~~ 68 (253)
T 4fcu_A 24 HDRPMILRVVDQAKKVEGFDDLCVATD----D--E---RIAEICRAEGVD-VVLT 68 (253)
T ss_dssp TTEEHHHHHHHHHHTCTTCCEEEEEES----C--H---HHHHHHHTTTCC-EEEC
T ss_pred CCeEhHHHHHHHHHHhcCCCEEEEECC----H--H---HHHHHHHHcCCe-EEEe
Confidence 3555566767 88887665 5677764 2 3 456778888997 6554
No 466
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=20.06 E-value=2.4e+02 Score=25.09 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=37.6
Q ss_pred HhhcCCeEEEEecCCCCCcHHH--HHHHHHHH-HH----cCCCeEEEccccccCchhhHHHHHHHHHHhhc
Q 042073 40 TKAYGVNVVVAVNMFATDSEAE--LNAVRIAA-MA----AGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 103 (225)
Q Consensus 40 i~~fGvpvVVAIN~F~~DT~~E--i~~i~~~c-~~----~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~ 103 (225)
+...|.|+|+++|+..-....+ ++.+.+.. ++ .+++ +.. .=+.=|.|-.+|-+.+.+..++
T Consensus 288 l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 288 MERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP-LIF--TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp HHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC-EEE--CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc-EEE--EECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999986432222 22222222 22 2444 332 3367789999999988887764
No 467
>3b9o_A Alkane monoxygenase; LADA, alkane hydroxylase, monooxygenase, plasmid, oxidoreductase; HET: FMN; 1.90A {Geobacillus thermodenitrificans} PDB: 3b9n_A*
Probab=20.04 E-value=3e+02 Score=24.80 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=44.3
Q ss_pred cHHHH-HHHHHHHHHcCCCeEEEccccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHH
Q 042073 58 SEAEL-NAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKI 122 (225)
Q Consensus 58 T~~Ei-~~i~~~c~~~g~~~~avs~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI 122 (225)
|++|+ +.|.++.++.|+..+.+.... --+.-..+|+.|+=.+.. ..-|+.-|+ ..+|+|++
T Consensus 355 tpe~Vad~L~~~~~~~G~d~~~l~~~~--~~~~l~~fa~~V~P~L~~-rg~~~~~y~-~~tlr~~l 416 (440)
T 3b9o_A 355 TPKKVADEMQYLVEEAGIDGFNLVQYV--SPGTFVDFIELVVPELQK-RGLYRVDYE-EGTYREKL 416 (440)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECSS--TTHHHHHHHHHHHHHHHH-TTSSCSSCC-SSCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCC--CHHHHHHHHHhhhHHhhh-cCCcccCCC-CCChHHHc
Confidence 45665 567888888999877665433 234566789999998875 345888898 55999988
Done!