BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042077
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana
GN=APC6 PE=2 SV=1
Length = 543
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 75/79 (94%)
Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
++EEIEK+RG+VRDCVSKHLYSSAIFFADK+AALTNDP+ +YMQAQALFLGRHYRR FHL
Sbjct: 2 REEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHL 61
Query: 78 LNASKIVPRDLRFRYLAEQ 96
LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80
>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16
PE=1 SV=2
Length = 620
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALT-NDPTGVYMQAQALFLGRHYRRPFHLLNA 80
+E+LR VR + + Y SA+F+ADK+A+L+ +P +Y AQ L+L Y R H L +
Sbjct: 3 LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62
Query: 81 SKIVPRDLRFRYLAEQKNFNEK 102
K+ RYLA + ++ K
Sbjct: 63 RKLDKLYEACRYLAARCHYAAK 84
>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16
PE=2 SV=1
Length = 620
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80
+E LR VR + + Y SA+F+ADK+A+L++ +P VY AQ L+L Y R H L +
Sbjct: 3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62
Query: 81 SKIVPRDLRFRYLAEQKNFNEK 102
K+ RYLA + ++ K
Sbjct: 63 RKLDKLYEACRYLAARCHYAAK 84
>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1
SV=1
Length = 840
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS 81
IE+LR D + +H+Y +A + ADK+ ++NDP + Q + Y R L+ +
Sbjct: 230 IERLRLWRFDALMQHMYRTAEYIADKVYNISNDPDDAFWLGQVYYNNNQYVRAVELITRN 289
Query: 82 KIVPRDLRFRYL 93
+ ++ RYL
Sbjct: 290 NLDGVNILCRYL 301
>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum
GN=anapc6 PE=3 SV=1
Length = 865
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 22 IEK-LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTG-----VYMQAQALFLGRHYRRPF 75
IEK L+ + + +S H Y +AIFF+DK+ L + +Y+ AL+L R ++R
Sbjct: 11 IEKQLKEKIENALSIHSYPTAIFFSDKLLNLVTIHSKEYVKILYILCDALYLDRQFQRSS 70
Query: 76 HLL 78
+L+
Sbjct: 71 YLI 73
>sp|P10505|APC3_SCHPO Anaphase-promoting complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nuc2 PE=1 SV=3
Length = 665
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLN 79
++L+ L+ C+ Y ++IF+++++ A+ + +Y+ A + FL Y + LL+
Sbjct: 2 TDRLKCLIWYCIDNQNYDNSIFYSERLHAIEDSNESLYLLAYSHFLNLDYNIVYDLLD 59
>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2
Length = 671
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%)
Query: 25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIV 84
LR D + + Y A F +K+ +T +P + AQ Y R LL +
Sbjct: 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146
Query: 85 PRDLRFRYLA 94
R RYLA
Sbjct: 147 NRSSACRYLA 156
>sp|Q09771|ATF31_SCHPO Transcription factor atf31 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=atf31 PE=3 SV=1
Length = 209
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 12 LQFHNEKKEEIEKLRGLV---RDCVSKHLYSSAIFFADKIAALT 52
LQ N+ +EEI KLR LV RDC S A+F K LT
Sbjct: 164 LQSANDLREEIIKLRTLVFAHRDCPVSKACSKALFLMGKEKPLT 207
>sp|A7HWQ5|RPOC_PARL1 DNA-directed RNA polymerase subunit beta' OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=rpoC PE=3 SV=1
Length = 1397
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 2 LSREPNIPLDLQFHNEKKEEIEKLRGLV-RDCVSKHLYSSAIFFADKIAAL 51
L R PN+P DL K +I K+ +V R C K + F D+I AL
Sbjct: 581 LPRHPNVPFDLVNRLLTKRDISKMIDVVYRHCGQKE----TVIFCDQIMAL 627
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,480,519
Number of Sequences: 539616
Number of extensions: 1412433
Number of successful extensions: 3128
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3120
Number of HSP's gapped (non-prelim): 13
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)