Query 042077
Match_columns 109
No_of_seqs 103 out of 163
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1173 Anaphase-promoting com 99.9 5.4E-22 1.2E-26 169.1 7.5 86 22-107 16-106 (611)
2 PF12895 Apc3: Anaphase-promot 99.4 1.4E-13 2.9E-18 89.0 4.2 73 34-106 1-81 (84)
3 PF04049 APC8: Anaphase promot 98.1 1.5E-05 3.4E-10 57.7 6.8 75 20-98 8-113 (142)
4 PF14559 TPR_19: Tetratricopep 97.7 0.00016 3.6E-09 43.8 5.7 49 33-81 2-51 (68)
5 TIGR02552 LcrH_SycD type III s 97.5 0.00078 1.7E-08 45.4 7.8 77 23-99 18-96 (135)
6 PF13371 TPR_9: Tetratricopept 97.1 0.0015 3.4E-08 40.0 5.2 52 30-81 3-55 (73)
7 PRK02603 photosystem I assembl 97.1 0.0061 1.3E-07 43.7 8.9 95 3-98 5-116 (172)
8 PF13432 TPR_16: Tetratricopep 96.7 0.0043 9.4E-08 37.4 4.6 52 29-80 4-56 (65)
9 PLN03088 SGT1, suppressor of 96.3 0.018 4E-07 46.6 7.6 65 33-97 47-113 (356)
10 cd00189 TPR Tetratricopeptide 96.1 0.057 1.2E-06 31.2 6.9 71 28-98 6-78 (100)
11 PF13414 TPR_11: TPR repeat; P 96.0 0.018 3.8E-07 34.9 4.6 57 24-80 5-63 (69)
12 PF12895 Apc3: Anaphase-promot 96.0 0.0077 1.7E-07 38.3 3.0 55 25-80 28-83 (84)
13 TIGR02917 PEP_TPR_lipo putativ 96.0 0.047 1E-06 45.4 8.3 76 23-98 23-100 (899)
14 TIGR02552 LcrH_SycD type III s 95.5 0.082 1.8E-06 35.4 6.7 55 26-80 55-110 (135)
15 TIGR02521 type_IV_pilW type IV 95.3 0.2 4.3E-06 34.7 8.2 59 22-80 31-90 (234)
16 PRK15359 type III secretion sy 95.2 0.16 3.4E-06 35.8 7.7 71 28-98 30-102 (144)
17 KOG1126 DNA-binding cell divis 95.1 0.029 6.2E-07 49.7 4.3 78 32-109 499-583 (638)
18 TIGR03302 OM_YfiO outer membra 94.8 0.19 4E-06 37.0 7.4 80 21-100 32-119 (235)
19 PRK15359 type III secretion sy 94.8 0.088 1.9E-06 37.2 5.3 68 29-96 65-134 (144)
20 PF03704 BTAD: Bacterial trans 94.7 0.3 6.6E-06 33.6 7.9 60 21-80 61-121 (146)
21 PLN03088 SGT1, suppressor of 94.7 0.17 3.8E-06 40.9 7.4 82 24-105 4-92 (356)
22 PRK10370 formate-dependent nit 94.4 0.42 9.2E-06 35.6 8.5 69 30-98 81-154 (198)
23 TIGR02521 type_IV_pilW type IV 93.7 0.46 1E-05 32.9 7.0 70 29-98 142-213 (234)
24 PRK10803 tol-pal system protei 93.6 0.74 1.6E-05 36.2 8.9 76 23-98 144-227 (263)
25 PRK12370 invasion protein regu 93.5 0.28 6.2E-06 41.7 6.9 49 32-80 348-397 (553)
26 TIGR00990 3a0801s09 mitochondr 93.5 0.84 1.8E-05 38.9 9.7 84 21-104 126-215 (615)
27 PF13428 TPR_14: Tetratricopep 93.4 0.17 3.6E-06 28.8 3.7 42 55-96 1-43 (44)
28 PF13525 YfiO: Outer membrane 93.3 0.5 1.1E-05 35.0 7.2 79 23-101 6-92 (203)
29 PRK10866 outer membrane biogen 93.3 0.97 2.1E-05 34.9 8.9 75 24-98 34-116 (243)
30 PF09295 ChAPs: ChAPs (Chs5p-A 93.2 0.36 7.9E-06 40.4 6.8 61 23-83 235-296 (395)
31 TIGR02795 tol_pal_ybgF tol-pal 92.9 0.76 1.6E-05 29.3 6.7 75 25-99 5-87 (119)
32 PF07719 TPR_2: Tetratricopept 92.5 0.18 4E-06 26.2 2.8 25 56-80 2-26 (34)
33 TIGR02917 PEP_TPR_lipo putativ 92.3 0.83 1.8E-05 38.1 7.8 50 31-80 168-218 (899)
34 cd05804 StaR_like StaR_like; a 92.1 1.9 4.1E-05 33.3 9.2 53 29-81 121-174 (355)
35 CHL00033 ycf3 photosystem I as 92.0 1.3 2.9E-05 31.2 7.7 59 22-80 35-97 (168)
36 cd00189 TPR Tetratricopeptide 91.7 0.87 1.9E-05 26.0 5.4 53 28-80 40-93 (100)
37 TIGR02795 tol_pal_ybgF tol-pal 91.4 1.1 2.4E-05 28.5 6.2 53 28-80 45-101 (119)
38 PRK15179 Vi polysaccharide bio 91.4 1.5 3.2E-05 39.3 8.7 75 32-106 96-177 (694)
39 PF13174 TPR_6: Tetratricopept 91.3 0.22 4.7E-06 25.7 2.2 24 57-80 2-25 (33)
40 PF09976 TPR_21: Tetratricopep 91.0 3.8 8.3E-05 28.4 9.0 78 30-107 19-109 (145)
41 TIGR00990 3a0801s09 mitochondr 91.0 1.6 3.6E-05 37.2 8.5 46 34-79 377-423 (615)
42 PF13432 TPR_16: Tetratricopep 90.7 0.42 9.1E-06 28.4 3.4 41 59-99 1-42 (65)
43 PF13429 TPR_15: Tetratricopep 90.5 0.55 1.2E-05 35.7 4.7 54 27-80 185-239 (280)
44 PRK15363 pathogenicity island 90.5 2 4.3E-05 32.0 7.4 83 16-98 28-113 (157)
45 PF13431 TPR_17: Tetratricopep 90.1 0.49 1.1E-05 25.9 3.1 30 46-75 3-33 (34)
46 PRK15331 chaperone protein Sic 90.0 1.2 2.6E-05 33.5 6.0 85 14-98 29-115 (165)
47 PRK12370 invasion protein regu 89.9 0.79 1.7E-05 39.0 5.6 71 37-107 319-396 (553)
48 PRK15174 Vi polysaccharide exp 89.3 2.6 5.6E-05 36.9 8.4 65 33-97 257-327 (656)
49 PRK11788 tetratricopeptide rep 89.2 3.9 8.4E-05 31.9 8.6 52 29-80 256-307 (389)
50 PRK11447 cellulose synthase su 89.2 2.6 5.5E-05 39.1 8.6 81 25-105 464-551 (1157)
51 PRK11788 tetratricopeptide rep 88.5 2.1 4.5E-05 33.4 6.7 49 32-80 190-239 (389)
52 PF13371 TPR_9: Tetratricopept 88.3 0.56 1.2E-05 28.3 2.7 39 61-99 1-40 (73)
53 PF12569 NARP1: NMDA receptor- 86.6 2.8 6.1E-05 36.3 6.9 77 29-107 201-286 (517)
54 PF13512 TPR_18: Tetratricopep 86.4 3.9 8.4E-05 29.9 6.6 79 23-101 11-97 (142)
55 PRK10049 pgaA outer membrane p 86.3 4.2 9.1E-05 36.1 8.0 50 30-80 91-141 (765)
56 PRK11189 lipoprotein NlpI; Pro 86.0 2.2 4.9E-05 33.3 5.6 51 30-80 106-157 (296)
57 PRK15179 Vi polysaccharide bio 86.0 2.4 5.2E-05 37.9 6.3 47 34-80 132-179 (694)
58 PF13424 TPR_12: Tetratricopep 85.8 5.9 0.00013 24.1 6.7 58 23-80 6-71 (78)
59 PF13414 TPR_11: TPR repeat; P 85.3 0.61 1.3E-05 27.9 1.7 47 54-100 2-49 (69)
60 PRK15174 Vi polysaccharide exp 85.1 4.1 8.8E-05 35.6 7.3 59 22-80 42-101 (656)
61 KOG2003 TPR repeat-containing 84.7 4.8 0.0001 35.7 7.4 76 22-97 626-704 (840)
62 TIGR02561 HrpB1_HrpK type III 84.5 11 0.00024 28.1 8.3 80 20-99 8-89 (153)
63 PF07721 TPR_4: Tetratricopept 84.4 2 4.3E-05 22.0 3.2 24 56-79 2-25 (26)
64 PRK10747 putative protoheme IX 84.3 2.5 5.5E-05 34.4 5.3 51 29-79 160-211 (398)
65 TIGR00540 hemY_coli hemY prote 83.9 3.5 7.6E-05 33.6 6.0 53 28-80 159-212 (409)
66 PRK11189 lipoprotein NlpI; Pro 83.7 5.5 0.00012 31.1 6.9 74 33-106 75-155 (296)
67 PRK10049 pgaA outer membrane p 83.3 9.6 0.00021 33.8 8.9 79 28-106 365-450 (765)
68 PRK10370 formate-dependent nit 83.3 3.9 8.5E-05 30.4 5.6 43 38-80 126-169 (198)
69 smart00028 TPR Tetratricopepti 83.2 1.8 3.8E-05 20.1 2.6 25 56-80 2-26 (34)
70 PRK10803 tol-pal system protei 83.2 3.7 8E-05 32.3 5.7 51 30-80 188-242 (263)
71 PRK15363 pathogenicity island 83.2 3.1 6.7E-05 30.9 4.9 47 34-80 81-128 (157)
72 COG1729 Uncharacterized protei 82.3 1.3 2.9E-05 35.4 2.8 55 25-79 144-202 (262)
73 PF09613 HrpB1_HrpK: Bacterial 81.7 19 0.00041 26.9 8.6 82 19-100 7-90 (160)
74 PF09976 TPR_21: Tetratricopep 79.7 13 0.00029 25.6 7.0 53 28-80 54-110 (145)
75 COG4105 ComL DNA uptake lipopr 79.2 11 0.00025 30.1 7.2 78 21-98 33-118 (254)
76 PF14559 TPR_19: Tetratricopep 79.1 1.7 3.6E-05 25.8 1.9 43 65-107 1-49 (68)
77 PRK09782 bacteriophage N4 rece 78.6 13 0.00027 34.8 8.2 67 32-98 619-687 (987)
78 PF07720 TPR_3: Tetratricopept 77.8 3.5 7.6E-05 23.2 2.9 25 55-79 1-25 (36)
79 PRK09782 bacteriophage N4 rece 77.5 18 0.00039 33.8 8.9 71 36-106 590-666 (987)
80 PRK11447 cellulose synthase su 77.1 8.8 0.00019 35.6 6.8 51 30-80 277-328 (1157)
81 CHL00033 ycf3 photosystem I as 76.7 8.3 0.00018 27.1 5.3 51 30-80 80-138 (168)
82 KOG4340 Uncharacterized conser 76.6 5.2 0.00011 33.8 4.7 46 35-80 157-203 (459)
83 PF09295 ChAPs: ChAPs (Chs5p-A 75.9 14 0.0003 31.0 7.2 70 35-106 182-257 (395)
84 PRK02603 photosystem I assembl 75.9 15 0.00034 25.9 6.5 48 25-72 75-123 (172)
85 PF14853 Fis1_TPR_C: Fis1 C-te 75.7 4.3 9.2E-05 24.8 3.1 25 56-80 2-26 (53)
86 PF13176 TPR_7: Tetratricopept 75.6 3.4 7.4E-05 22.4 2.4 22 59-80 3-24 (36)
87 TIGR03302 OM_YfiO outer membra 74.6 7.1 0.00015 28.5 4.6 51 30-80 78-140 (235)
88 PF00515 TPR_1: Tetratricopept 74.5 5 0.00011 20.8 2.8 24 57-80 3-26 (34)
89 PF13181 TPR_8: Tetratricopept 74.0 5.4 0.00012 20.5 2.9 24 57-80 3-26 (34)
90 PRK14574 hmsH outer membrane p 73.5 21 0.00045 32.7 8.1 49 32-80 112-161 (822)
91 PF13374 TPR_10: Tetratricopep 73.1 5.7 0.00012 20.9 2.9 24 57-80 4-27 (42)
92 PF13429 TPR_15: Tetratricopep 72.1 5.4 0.00012 30.2 3.6 48 33-80 88-135 (280)
93 PRK15331 chaperone protein Sic 71.1 6.5 0.00014 29.5 3.7 47 34-80 83-130 (165)
94 KOG3785 Uncharacterized conser 70.6 8.4 0.00018 33.3 4.6 50 29-78 29-80 (557)
95 PF02151 UVR: UvrB/uvrC motif; 69.8 17 0.00036 20.2 4.7 33 20-52 2-34 (36)
96 PLN03098 LPA1 LOW PSII ACCUMUL 69.6 14 0.0003 32.0 5.7 54 28-81 81-138 (453)
97 KOG2376 Signal recognition par 69.3 11 0.00025 33.7 5.3 61 22-82 12-73 (652)
98 PF14689 SPOB_a: Sensor_kinase 68.9 25 0.00053 21.7 5.5 39 19-80 10-48 (62)
99 PLN03077 Protein ECB2; Provisi 68.7 26 0.00056 31.2 7.5 68 25-93 660-731 (857)
100 PLN03081 pentatricopeptide (PP 68.5 19 0.0004 31.3 6.5 67 25-92 497-567 (697)
101 PRK10153 DNA-binding transcrip 68.3 15 0.00032 31.7 5.7 51 31-81 429-479 (517)
102 PF07079 DUF1347: Protein of u 66.8 26 0.00055 30.9 6.8 53 30-82 470-522 (549)
103 TIGR00540 hemY_coli hemY prote 66.8 24 0.00051 28.7 6.5 45 35-79 312-359 (409)
104 PF12569 NARP1: NMDA receptor- 66.8 12 0.00025 32.5 4.8 50 58-107 197-252 (517)
105 KOG1155 Anaphase-promoting com 66.6 4.2 9.1E-05 35.7 2.1 40 56-96 79-122 (559)
106 PF14863 Alkyl_sulf_dimr: Alky 66.5 20 0.00043 26.0 5.3 48 22-69 70-118 (141)
107 cd05804 StaR_like StaR_like; a 66.5 24 0.00053 27.1 6.2 53 29-81 155-212 (355)
108 PF10300 DUF3808: Protein of u 66.2 16 0.00034 31.0 5.4 56 25-80 308-372 (468)
109 PF13424 TPR_12: Tetratricopep 65.1 8.2 0.00018 23.4 2.8 24 57-80 7-30 (78)
110 PRK10747 putative protoheme IX 65.0 18 0.00039 29.4 5.4 61 34-94 306-368 (398)
111 PF11846 DUF3366: Domain of un 64.8 14 0.0003 26.9 4.3 45 37-81 126-170 (193)
112 PF14561 TPR_20: Tetratricopep 64.2 13 0.00029 24.5 3.8 31 49-79 15-46 (90)
113 KOG0543 FKBP-type peptidyl-pro 63.8 15 0.00032 31.2 4.8 61 21-81 251-317 (397)
114 COG1116 TauB ABC-type nitrate/ 63.7 5.4 0.00012 31.8 2.1 23 33-55 186-208 (248)
115 COG4783 Putative Zn-dependent 63.6 33 0.00072 29.9 6.9 53 29-81 347-400 (484)
116 PF13428 TPR_14: Tetratricopep 63.5 20 0.00044 19.9 4.0 38 26-63 5-43 (44)
117 KOG1174 Anaphase-promoting com 61.7 23 0.00051 31.0 5.7 69 8-80 188-257 (564)
118 COG2956 Predicted N-acetylgluc 59.6 42 0.00092 28.4 6.7 47 34-80 153-205 (389)
119 COG2912 Uncharacterized conser 57.7 36 0.00079 27.4 5.8 72 9-80 168-240 (269)
120 KOG0624 dsRNA-activated protei 57.5 48 0.001 28.6 6.7 74 23-96 156-231 (504)
121 PRK10941 hypothetical protein; 56.4 73 0.0016 25.3 7.4 59 22-80 181-240 (269)
122 PF14863 Alkyl_sulf_dimr: Alky 55.7 25 0.00053 25.5 4.2 56 44-99 59-115 (141)
123 KOG3364 Membrane protein invol 55.0 14 0.0003 27.5 2.8 44 37-80 50-96 (149)
124 COG4235 Cytochrome c biogenesi 53.9 39 0.00084 27.5 5.5 43 36-78 207-250 (287)
125 KOG1129 TPR repeat-containing 53.7 54 0.0012 28.1 6.4 69 32-105 233-305 (478)
126 PF04733 Coatomer_E: Coatomer 47.7 1.1E+02 0.0023 24.3 7.1 60 21-80 166-226 (290)
127 smart00668 CTLH C-terminal to 46.8 27 0.00059 20.1 2.8 27 26-52 5-31 (58)
128 KOG2376 Signal recognition par 46.3 72 0.0016 28.9 6.3 80 24-107 48-134 (652)
129 PF13525 YfiO: Outer membrane 46.0 23 0.00049 26.1 2.8 46 54-99 4-53 (203)
130 PF13512 TPR_18: Tetratricopep 44.1 19 0.00041 26.3 2.1 27 54-80 9-35 (142)
131 PRK14574 hmsH outer membrane p 43.6 1.7E+02 0.0037 27.0 8.5 76 22-97 416-493 (822)
132 PF11817 Foie-gras_1: Foie gra 43.4 85 0.0018 24.0 5.8 48 20-80 156-203 (247)
133 COG1729 Uncharacterized protei 42.2 89 0.0019 25.1 5.8 48 33-80 189-240 (262)
134 PRK11906 transcriptional regul 41.7 90 0.002 27.1 6.1 58 39-96 321-380 (458)
135 PF06957 COPI_C: Coatomer (COP 41.5 16 0.00034 31.3 1.5 35 22-56 300-334 (422)
136 KOG2076 RNA polymerase III tra 40.6 59 0.0013 30.5 5.0 49 32-80 459-508 (895)
137 KOG2471 TPR repeat-containing 40.4 28 0.00061 31.2 2.9 31 53-83 238-268 (696)
138 COG3118 Thioredoxin domain-con 40.3 1.3E+02 0.0027 24.9 6.5 62 22-83 119-196 (304)
139 KOG4162 Predicted calmodulin-b 40.2 71 0.0015 29.6 5.5 69 39-107 461-537 (799)
140 COG4352 RPL13 Ribosomal protei 39.3 33 0.00072 24.4 2.7 32 5-36 78-109 (113)
141 COG2956 Predicted N-acetylgluc 39.2 96 0.0021 26.3 5.7 61 20-80 178-239 (389)
142 PF13812 PPR_3: Pentatricopept 37.5 52 0.0011 16.4 2.7 21 60-80 6-26 (34)
143 KOG3785 Uncharacterized conser 36.9 1.4E+02 0.0031 26.0 6.5 71 20-94 54-128 (557)
144 smart00671 SEL1 Sel1-like repe 36.6 62 0.0013 16.4 3.1 26 55-80 1-30 (36)
145 COG4525 TauB ABC-type taurine 36.1 12 0.00026 29.9 -0.0 23 33-55 188-210 (259)
146 COG5110 RPN1 26S proteasome re 36.1 1.3E+02 0.0027 27.7 6.2 69 29-98 212-297 (881)
147 PF08513 LisH: LisH; InterPro 35.8 68 0.0015 16.6 3.0 21 23-43 1-21 (27)
148 PRK10866 outer membrane biogen 35.6 87 0.0019 24.0 4.7 42 28-69 75-120 (243)
149 PF12688 TPR_5: Tetratrico pep 35.5 1.5E+02 0.0033 20.5 7.3 77 27-105 8-97 (120)
150 PF10037 MRP-S27: Mitochondria 35.3 94 0.002 26.6 5.2 53 27-79 108-162 (429)
151 PLN03098 LPA1 LOW PSII ACCUMUL 34.4 73 0.0016 27.6 4.4 52 55-106 75-135 (453)
152 PLN03081 pentatricopeptide (PP 34.3 1.6E+02 0.0035 25.6 6.6 54 29-82 433-489 (697)
153 TIGR03504 FimV_Cterm FimV C-te 33.7 58 0.0013 19.0 2.7 22 59-80 3-24 (44)
154 PF09797 NatB_MDM20: N-acetylt 33.3 2.1E+02 0.0045 23.0 6.8 44 37-80 198-242 (365)
155 PLN03077 Protein ECB2; Provisi 33.0 2.1E+02 0.0045 25.5 7.2 55 28-82 595-652 (857)
156 KOG0551 Hsp90 co-chaperone CNS 33.0 2.3E+02 0.0051 24.1 7.1 71 30-100 89-165 (390)
157 KOG4340 Uncharacterized conser 32.6 1.3E+02 0.0027 25.7 5.4 75 33-107 21-102 (459)
158 cd00103 IRF Interferon Regulat 32.5 12 0.00025 26.0 -0.5 24 24-48 3-26 (107)
159 COG4105 ComL DNA uptake lipopr 32.1 1.1E+02 0.0023 24.6 4.8 43 25-67 74-120 (254)
160 KOG1126 DNA-binding cell divis 31.9 97 0.0021 28.0 4.9 65 33-97 534-600 (638)
161 KOG2005 26S proteasome regulat 31.7 1.5E+02 0.0032 27.6 6.0 68 31-98 212-295 (878)
162 KOG1550 Extracellular protein 31.6 1.1E+02 0.0024 26.4 5.1 60 37-98 308-370 (552)
163 PF12279 DUF3619: Protein of u 30.7 59 0.0013 23.4 2.9 41 10-50 14-57 (131)
164 PF01535 PPR: PPR repeat; Int 30.4 60 0.0013 15.7 2.2 20 61-80 6-25 (31)
165 PRK11906 transcriptional regul 29.5 1.1E+02 0.0025 26.5 4.8 46 35-80 351-397 (458)
166 KOG2002 TPR-containing nuclear 29.5 1.1E+02 0.0023 29.2 4.9 60 30-89 688-751 (1018)
167 PF12854 PPR_1: PPR repeat 29.4 80 0.0017 16.8 2.7 22 59-80 11-32 (34)
168 PF10366 Vps39_1: Vacuolar sor 29.2 53 0.0011 22.4 2.3 25 57-81 41-65 (108)
169 PF12862 Apc5: Anaphase-promot 28.3 1.7E+02 0.0037 18.8 5.1 49 32-80 8-66 (94)
170 COG3923 PriC Primosomal replic 28.1 86 0.0019 23.9 3.4 28 20-51 55-82 (175)
171 TIGR00756 PPR pentatricopeptid 28.0 81 0.0018 15.3 2.5 20 61-80 6-25 (35)
172 PF12345 DUF3641: Protein of u 27.1 41 0.00088 24.6 1.5 57 46-104 25-91 (134)
173 PF08631 SPO22: Meiosis protei 26.7 1.2E+02 0.0027 23.4 4.2 48 32-79 3-60 (278)
174 TIGR03824 FlgM_jcvi flagellar 26.4 1.3E+02 0.0028 19.9 3.8 23 29-51 71-94 (95)
175 PRK14720 transcript cleavage f 25.5 3.1E+02 0.0067 25.9 7.1 58 20-77 29-87 (906)
176 PRK10093 primosomal replicatio 24.8 1.2E+02 0.0025 23.0 3.7 28 20-51 51-78 (171)
177 PF04781 DUF627: Protein of un 24.6 2.3E+02 0.005 19.9 4.9 60 29-95 3-62 (111)
178 PF07035 Mic1: Colon cancer-as 24.3 3E+02 0.0066 20.4 7.1 70 22-95 45-129 (167)
179 KOG1550 Extracellular protein 23.9 1.3E+02 0.0027 26.0 4.2 64 36-100 263-337 (552)
180 PF02259 FAT: FAT domain; Int 23.4 3.4E+02 0.0073 20.6 7.7 59 22-80 146-209 (352)
181 PF15310 VAD1-2: Vitamin A-def 22.4 25 0.00053 28.0 -0.4 16 38-53 16-31 (245)
182 COG3063 PilF Tfp pilus assembl 22.2 4.2E+02 0.0091 21.3 8.6 82 25-107 38-127 (250)
183 PLN03218 maturation of RBCL 1; 22.2 3.6E+02 0.0077 25.7 7.0 54 26-79 688-743 (1060)
184 PF15008 DUF4518: Domain of un 21.9 53 0.0011 26.4 1.4 24 73-97 51-74 (262)
185 PF08238 Sel1: Sel1 repeat; I 21.8 1.1E+02 0.0025 15.7 2.4 26 55-80 1-33 (39)
186 KOG2053 Mitochondrial inherita 21.7 3E+02 0.0065 26.1 6.2 62 20-81 7-69 (932)
187 KOG2002 TPR-containing nuclear 21.4 2E+02 0.0043 27.5 5.1 57 25-81 345-406 (1018)
188 PF14774 FAM177: FAM177 family 21.4 1.7E+02 0.0038 20.8 3.8 49 12-63 55-105 (123)
189 KOG2581 26S proteasome regulat 21.3 93 0.002 27.2 2.8 36 59-94 213-251 (493)
190 PLN03218 maturation of RBCL 1; 21.2 5.6E+02 0.012 24.4 8.0 74 25-98 722-800 (1060)
191 KOG1174 Anaphase-promoting com 21.2 1E+02 0.0022 27.2 3.1 24 57-80 302-325 (564)
192 KOG0775 Transcription factor S 20.8 1.4E+02 0.003 24.6 3.6 27 60-86 104-130 (304)
193 PF07079 DUF1347: Protein of u 20.6 1.2E+02 0.0026 26.9 3.3 71 25-99 424-506 (549)
194 COG4455 ImpE Protein of avirul 20.4 4E+02 0.0088 21.6 6.0 56 25-80 4-60 (273)
195 COG3071 HemY Uncharacterized e 20.1 4.1E+02 0.0088 22.8 6.3 62 25-86 156-221 (400)
No 1
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.4e-22 Score=169.08 Aligned_cols=86 Identities=45% Similarity=0.787 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc---
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN--- 98 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~--- 98 (109)
+++.|.++++++++|+|+||+|||||+..++++|.|+||+|||||.+|||+||.++|+.+++...++.||||+|+|+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 55566666699999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --hhHHHhhhh
Q 042077 99 --FNEKYLEIE 107 (109)
Q Consensus 99 --~~~al~~~~ 107 (109)
|++++++|.
T Consensus 96 k~~~~al~vl~ 106 (611)
T KOG1173|consen 96 KEWDQALLVLG 106 (611)
T ss_pred HHHHHHHHHhc
Confidence 567777764
No 2
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.43 E-value=1.4e-13 Score=89.00 Aligned_cols=73 Identities=25% Similarity=0.440 Sum_probs=60.9
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHH--HHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc-----hhHHHhh
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQ--AQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN-----FNEKYLE 105 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lL--Aq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~-----~~~al~~ 105 (109)
++++|++|+++.||++..++ ++++.+|+ |+|||+.|+|.+|+.++++.+....++.|+|+.|+|+ |++|+..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57999999999999999998 45666666 9999999999999999988666667889999999998 4566554
Q ss_pred h
Q 042077 106 I 106 (109)
Q Consensus 106 ~ 106 (109)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=98.07 E-value=1.5e-05 Score=57.71 Aligned_cols=75 Identities=25% Similarity=0.421 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-------------------------------CchhHHHHHHHHhhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-------------------------------DPTGVYMQAQALFLG 68 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-------------------------------~~~dv~lLAq~~y~~ 68 (109)
+.-..||..+++|-+.+.|.+|=.-||-+..|.+ ...|.|+||+.||-.
T Consensus 8 ~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~ 87 (142)
T PF04049_consen 8 EIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDC 87 (142)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhch
Confidence 5678899999999999999999999999999981 013999999999999
Q ss_pred CChHHHHHHHhcCCCCCCChhhHHHHhhcc
Q 042077 69 RHYRRPFHLLNASKIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 69 gqy~RA~~LL~~~~L~~~~~~crYLaA~c~ 98 (109)
++|.||.+.|++. +++.+++|.-.+.
T Consensus 88 kEy~RaA~~L~~~----~s~~~~FL~lYs~ 113 (142)
T PF04049_consen 88 KEYDRAAHVLKDC----KSPKALFLRLYSR 113 (142)
T ss_pred hHHHHHHHHHccC----CCchHHHHHHHHH
Confidence 9999999999984 3555555544443
No 4
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00016 Score=43.83 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
+.++.|+.|+-+-++++...+ +++-.+.||+||+..|++..|..++.+-
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578999999999999999998 7788889999999999999999999884
No 5
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.51 E-value=0.00078 Score=45.43 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
..+-....-++.+++|+.|+.+.++++.+.+ ++.-.+.+|++++..|++..|...+++. .+...++.-.|..|.|++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4455677778889999999999999999876 6778889999999999999999877664 445667777888888763
No 6
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.11 E-value=0.0015 Score=39.98 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=46.9
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
.-++.++.|+.|+-+.|+++.+.+ ++.-.+..|.|++..|+|..|...+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 346789999999999999999987 7888888999999999999999988763
No 7
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.09 E-value=0.0061 Score=43.74 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=65.7
Q ss_pred CCCCCCcccccchhhhH------------HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----hhHHHHHHHHh
Q 042077 3 SREPNIPLDLQFHNEKK------------EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----TGVYMQAQALF 66 (109)
Q Consensus 3 ~~~~~~~~d~~~~~~~~------------~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----~dv~lLAq~~y 66 (109)
||.+|| .|-+|..|-| ....-+..+-.-+...+.|+.|+.+.++.+...+++ ...+.+|.+++
T Consensus 5 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 83 (172)
T PRK02603 5 QRNDNF-IDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA 83 (172)
T ss_pred ccccch-HhHHHHHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 455665 4666555543 233345566667788999999999999999887643 36788999999
Q ss_pred hcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 67 LGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 67 ~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..|+|..|...+++. .+...+....+..+.++
T Consensus 84 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 84 SNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 999999999987753 22233444444444444
No 8
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.70 E-value=0.0043 Score=37.39 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=45.9
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-...+.++.|+.|+=.-++++...+ +++-.+++|.|++..|++..|...+++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456789999999999999999997 788999999999999999999998876
No 9
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.35 E-value=0.018 Score=46.58 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+..+.|+.|+=.+++++.+.+ ++...+.+|.+++..|+|..|...+++. .+...+.......++|
T Consensus 47 ~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 47 IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344455555555555544444 3334444455555555555555444431 2223334444444444
No 10
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.09 E-value=0.057 Score=31.18 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=51.6
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
....+..++.++.|+-+.++++...+ ++.-.+.+|.+++..|++..|...+++. .....+....+..|.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 44455668999999999999988876 4467788999999999999999988763 22233444444445444
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.02 E-value=0.018 Score=34.88 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC-ChHHHHHHHhc
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR-HYRRPFHLLNA 80 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g-qy~RA~~LL~~ 80 (109)
.+...=.-+..++.|+.|+-.-+|.+.+.+ ++.-.+.+|.|++..| ++.+|+..+++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344555667889999999999999999987 6778899999999999 79999987765
No 12
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.01 E-value=0.0077 Score=38.33 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+-.+..-+...+.|+.|+=+.++ ....+ +++..+++|+|++..|+|..|+..+.+
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34456778889999999999999 54554 568899999999999999999998875
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.99 E-value=0.047 Score=45.45 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+.+...-..++.+++|+.|+-..+|.+...+ +++--+.+|.+++..|+|..|...+++. .....+...+++.|+|+
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence 3345556667778888888888888888776 6777788888888888888888877652 11223344455555554
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.51 E-value=0.082 Score=35.43 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+..-+..+++|+.|+-+.++++.+.+ +++..+.+|.|++..|++.+|...+++
T Consensus 55 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 55 LGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445556678899999999999998887 677889999999999999999998876
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.27 E-value=0.2 Score=34.70 Aligned_cols=59 Identities=10% Similarity=-0.147 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
....-.+.+.+..++.|+.|+-+.++.+...+ ++.-.+.+|.+++..|++..|...+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 90 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445556777778888888888888877765 455667788888888888888877765
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.22 E-value=0.16 Score=35.83 Aligned_cols=71 Identities=8% Similarity=-0.042 Sum_probs=45.6
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+-.-....+.|+.|+-..++++.+.+ +++..+.+|.++...|+|..|....++. .+...++.-.+-.|.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 44555667777777777777777776 5566677777777777777777766653 33344445455555544
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=0.029 Score=49.68 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=66.5
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHh
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYL 104 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~ 104 (109)
++.+.+|+.|.|.-.|.+.+.+ +.-=+..++..+.+.|+...|+.++.+. .++.+++.|||=-|+-+ |+|||.
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 6789999999999999998876 4556667789999999999999999875 67889999999888754 689999
Q ss_pred hhhcC
Q 042077 105 EIELL 109 (109)
Q Consensus 105 ~~~~~ 109 (109)
|.|-|
T Consensus 579 ~LEeL 583 (638)
T KOG1126|consen 579 ELEEL 583 (638)
T ss_pred HHHHH
Confidence 88753
No 18
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.84 E-value=0.19 Score=36.98 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc---hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh---hHH
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP---TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR---FRY 92 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~---crY 92 (109)
..+.+-.....++..++|+.|+-.-+++....+ +| +-.+.+|.+|+..|++..|...+++- ...+.++. ..|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455666777788899999999999999999886 44 34589999999999999999988762 11223333 567
Q ss_pred HHhhcchh
Q 042077 93 LAEQKNFN 100 (109)
Q Consensus 93 LaA~c~~~ 100 (109)
..+.|+++
T Consensus 112 ~~g~~~~~ 119 (235)
T TIGR03302 112 LRGLSNYN 119 (235)
T ss_pred HHHHHHHH
Confidence 77777764
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.77 E-value=0.088 Score=37.15 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ 96 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~ 96 (109)
-.-+...++|+.|+.+-++.+.+.+ +++-.+-+|.|+...|++..|...+++. .+...++.-..+.+.
T Consensus 65 g~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 65 AGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3346778999999999999999997 7889999999999999999999988763 223344444444443
No 20
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.75 E-value=0.3 Score=33.63 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-++-++.++..++..+.|+.|+-++++++.+.| +..-...|-.+|...|++..|...-++
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 466777788888899999999999999999999 556777889999999999999887664
No 21
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.65 E-value=0.17 Score=40.94 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc---
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN--- 98 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~--- 98 (109)
.|..--..+...+.|+.|+-..++.+.+.+ ++.-.+.+|.||+..|+|..|+..+++. .+...++...+..|.++
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 456667788889999999999999999997 6777888999999999999999988774 44456666777677665
Q ss_pred --hhHHHhh
Q 042077 99 --FNEKYLE 105 (109)
Q Consensus 99 --~~~al~~ 105 (109)
|++|+..
T Consensus 84 g~~~eA~~~ 92 (356)
T PLN03088 84 EEYQTAKAA 92 (356)
T ss_pred CCHHHHHHH
Confidence 4555443
No 22
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.40 E-value=0.42 Score=35.62 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=55.9
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHH-hhcCC--hHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQAL-FLGRH--YRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~-y~~gq--y~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.-++..+.|++|+-.-+|.+.+.+ +++-.+.+|+++ +..|+ +..|..++++. .+...++..+++.|..+
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 357899999999999999999998 677888889996 68788 58999988873 44566777778777654
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.65 E-value=0.46 Score=32.86 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=50.7
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..-+...++++.|+-+.++.+...+ ++...+.+|.+++..|++.+|...+++. .+...++....+.+.+.
T Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445677899999999999988876 5667888999999999999999888763 21233444444455443
No 24
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.62 E-value=0.74 Score=36.23 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhc----CCCCCCChhhHHHH
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDLRFRYLA 94 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~~crYLa 94 (109)
.-+...+.-.+.++.|+.|+-.-++++..-++ |+..||||++||..|+|..|....++ ++-..+.+...|-.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 33555555556679999999999999998873 57999999999999999999987654 33223445555555
Q ss_pred hhcc
Q 042077 95 EQKN 98 (109)
Q Consensus 95 A~c~ 98 (109)
|.|+
T Consensus 224 g~~~ 227 (263)
T PRK10803 224 GVIM 227 (263)
T ss_pred HHHH
Confidence 6655
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=93.54 E-value=0.28 Score=41.66 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..++.++.|+-..+|.+.+.+ ++...+.+|.+++..|++.+|...+++
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567889999999999999887 566778889999999999999888876
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.53 E-value=0.84 Score=38.95 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN- 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~- 98 (109)
....++..-..+...+.|+.|+-.=+|.+.+.+++..-+-+|.||+..|+|..|+..+++. .+...+..+.+-.|.++
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4566778888899999999999999999999888777777999999999999999987763 33445666666666554
Q ss_pred ----hhHHHh
Q 042077 99 ----FNEKYL 104 (109)
Q Consensus 99 ----~~~al~ 104 (109)
|++|+.
T Consensus 206 ~lg~~~eA~~ 215 (615)
T TIGR00990 206 GLGKYADALL 215 (615)
T ss_pred HcCCHHHHHH
Confidence 566643
No 27
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.40 E-value=0.17 Score=28.84 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=28.7
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077 55 PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ 96 (109)
Q Consensus 55 ~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~ 96 (109)
|+-.+.||.+|...|++.+|..++++- .+...++.-++..|+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456778999999999999999988763 223445554444443
No 28
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.30 E-value=0.5 Score=35.03 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhc----CCCCCCChhhHHHH
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDLRFRYLA 94 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~~crYLa 94 (109)
+.+=..-...+.++.|..|+=.=+++..--+ .++..+++|.++|..|+|..|...+++ ++=...-+-..|+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 4455566778899999999999999998765 256999999999999999999987665 33223334578999
Q ss_pred hhcchhH
Q 042077 95 EQKNFNE 101 (109)
Q Consensus 95 A~c~~~~ 101 (109)
|.|.|+.
T Consensus 86 g~~~~~~ 92 (203)
T PF13525_consen 86 GLSYYKQ 92 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 29
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.28 E-value=0.97 Score=34.89 Aligned_cols=75 Identities=8% Similarity=-0.026 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----hhHHHHHHHHhhcCChHHHHHHHhc----CCCCCCChhhHHHHh
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----TGVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDLRFRYLAE 95 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----~dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~~crYLaA 95 (109)
.+=......+.++.|+.|+=.=+++....+++ ...+|+|.++|..|+|..|....++ ++=...-+-..|+.|
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34445566788999999999999999988743 3559999999999999999986654 332344566789999
Q ss_pred hcc
Q 042077 96 QKN 98 (109)
Q Consensus 96 ~c~ 98 (109)
.|.
T Consensus 114 ~~~ 116 (243)
T PRK10866 114 LTN 116 (243)
T ss_pred Hhh
Confidence 885
No 30
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.18 E-value=0.36 Score=40.41 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCC
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKI 83 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L 83 (109)
+-|-....-+++++.|+.|+=.|.|.+.+++ +-+.-+.||+||-..|+|..|+..|.+.+.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 4455667778899999999999999999998 667999999999999999999999998653
No 31
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.88 E-value=0.76 Score=29.35 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhcC-CCCCC---ChhhHHHHhh
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPR---DLRFRYLAEQ 96 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~---~~~crYLaA~ 96 (109)
+-......+.++.|+.|+=.-+++....++ ++..+++|.+++..|+|..|...+++- .+... .+...+..|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 345566677789999998888888877653 357889999999999999999988752 11122 2445677776
Q ss_pred cch
Q 042077 97 KNF 99 (109)
Q Consensus 97 c~~ 99 (109)
++.
T Consensus 85 ~~~ 87 (119)
T TIGR02795 85 SLQ 87 (119)
T ss_pred HHH
Confidence 653
No 32
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.47 E-value=0.18 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 56 TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 56 ~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+-.+.+|.+++..|+|..|...+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4568999999999999999998875
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.29 E-value=0.83 Score=38.11 Aligned_cols=50 Identities=6% Similarity=0.103 Sum_probs=27.7
Q ss_pred HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-.+..+.|+.|+-+.++++...+ ++...+.+|.+++..|++..|...+++
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 218 (899)
T TIGR02917 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34455556666666666555544 344555555666666666666555543
No 34
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.14 E-value=1.9 Score=33.26 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=46.1
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
-.-.+.++.++.|+=.+++.+.+.+ ++.-.+.+|.+++..|++..|...+++.
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3455778999999999999999987 5677889999999999999999998763
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.01 E-value=1.3 Score=31.22 Aligned_cols=59 Identities=12% Similarity=-0.060 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch----hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT----GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~----dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
...+-.+..-+..++.|+.|+-+.++.+.+.+++. ..+-+|.++...|++..|...+++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455667778889999999999999999876543 467889999999999999998876
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.69 E-value=0.87 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..-+..++.++.|+-+-++.+.+.+ ++.-.+.+|.+++..|++..|...+.+
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445566889999999999988876 556778999999999999999988765
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.42 E-value=1.1 Score=28.53 Aligned_cols=53 Identities=11% Similarity=-0.017 Sum_probs=45.2
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..-+...+.|+.|+.+-+++....++ +...+.+|.++...|++..|...+++
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 455567789999999999999988753 45788999999999999999998875
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.38 E-value=1.5 Score=39.28 Aligned_cols=75 Identities=5% Similarity=-0.133 Sum_probs=57.9
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHh
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYL 104 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~ 104 (109)
-...|.|+.|.||=++++.+.+ +......+|+++.+.+++..|...+++. .....+....++.|.|+ |++|.+
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 3457899999999999999998 4567888999999999999998877763 22456777888888876 566655
Q ss_pred hh
Q 042077 105 EI 106 (109)
Q Consensus 105 ~~ 106 (109)
..
T Consensus 176 ~y 177 (694)
T PRK15179 176 CF 177 (694)
T ss_pred HH
Confidence 43
No 39
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.28 E-value=0.22 Score=25.70 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=21.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 57 GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 57 dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..|.+|.|++..|++.+|...+++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQR 25 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 578999999999999999998875
No 40
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.04 E-value=3.8 Score=28.36 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=50.9
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhcCCCCCCC----hhhHHHHhhcc---
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNASKIVPRD----LRFRYLAEQKN--- 98 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~----~~crYLaA~c~--- 98 (109)
...++.+.+..+.-..+++..-.++ +...+.+|++++..|++..|...++.---..+. ...++-.|+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 3344688888888788888887653 246777889999999999998888762111111 23444445554
Q ss_pred --hhHHHhhhh
Q 042077 99 --FNEKYLEIE 107 (109)
Q Consensus 99 --~~~al~~~~ 107 (109)
|++|+..++
T Consensus 99 ~~~d~Al~~L~ 109 (145)
T PF09976_consen 99 GQYDEALATLQ 109 (145)
T ss_pred CCHHHHHHHHH
Confidence 667766553
No 41
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.02 E-value=1.6 Score=37.18 Aligned_cols=46 Identities=22% Similarity=0.098 Sum_probs=20.1
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
..+.|+.|+-.-++++.+.+ +++-.+.+|++++..|+|..|...++
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444444444444433 33344444444444444444444443
No 42
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.69 E-value=0.42 Score=28.44 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 59 YMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 59 ~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
|-+|..++..|+|..|...++.- .....++..++..|.|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56899999999999999988762 223557778888888874
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=90.51 E-value=0.55 Score=35.73 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhc-CCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALT-NDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als-~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.++|-.++.+.++.|.-.-+++..-. ++|.-...||.+++..|++..|+..+++
T Consensus 185 ~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 185 ALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 34444444555554444444443333 2333334445555555555555554443
No 44
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=90.45 E-value=2 Score=31.96 Aligned_cols=83 Identities=6% Similarity=0.050 Sum_probs=62.6
Q ss_pred hhh-HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHH
Q 042077 16 NEK-KEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRY 92 (109)
Q Consensus 16 ~~~-~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crY 92 (109)
+++ ++.++.+-++--....++.|++|.=+-.-+.-+.+ +++-.|=||-|+-+.|+|..|+..-.+. .|...++..-+
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 56678888888888889999998877777777776 6777888888999999999888876653 34456666666
Q ss_pred HHhhcc
Q 042077 93 LAEQKN 98 (109)
Q Consensus 93 LaA~c~ 98 (109)
=+|.|+
T Consensus 108 ~ag~c~ 113 (157)
T PRK15363 108 AAAECY 113 (157)
T ss_pred HHHHHH
Confidence 666665
No 45
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.07 E-value=0.49 Score=25.95 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHhhcC-CchhHHHHHHHHhhcCChHHHH
Q 042077 46 DKIAALTN-DPTGVYMQAQALFLGRHYRRPF 75 (109)
Q Consensus 46 DKl~als~-~~~dv~lLAq~~y~~gqy~RA~ 75 (109)
.|.+.+.| +++.-+.||.+|...|++..|.
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46677776 7889999999999999999885
No 46
>PRK15331 chaperone protein SicA; Provisional
Probab=90.00 E-value=1.2 Score=33.47 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=60.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhH
Q 042077 14 FHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFR 91 (109)
Q Consensus 14 ~~~~~~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~cr 91 (109)
.+.++++..+.+-..-.+.-.++.|+.|.=+---|..... +++-.+=||-|+-..|+|..|+.+-.-. .+...+|.--
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 4556677888888888999999999998766555666665 7777777888999999999988754332 2223455555
Q ss_pred HHHhhcc
Q 042077 92 YLAEQKN 98 (109)
Q Consensus 92 YLaA~c~ 98 (109)
|-+|+|+
T Consensus 109 f~agqC~ 115 (165)
T PRK15331 109 FFTGQCQ 115 (165)
T ss_pred chHHHHH
Confidence 6666665
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=89.91 E-value=0.79 Score=38.97 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=53.2
Q ss_pred CchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHhhhh
Q 042077 37 LYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYLEIE 107 (109)
Q Consensus 37 ~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~~~~ 107 (109)
.++.|+=.++|.+.+.+ +++....+|.++...|++..|...+++. .+...++...+..|.++ +++|...++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999987 6667778999999999999999998773 33455555556555544 556665543
No 48
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.32 E-value=2.6 Score=36.87 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=39.0
Q ss_pred HHhCCchh----HHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 33 VSKHLYSS----AIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 33 L~~h~Y~t----AiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
..++.++. |+-+.+|++.+.+ ++.-...+|.++...|++..|...+++. .+...++..++..|.+
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566664 6777777777765 4556667777777777777777766542 2223444444444443
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=89.21 E-value=3.9 Score=31.89 Aligned_cols=52 Identities=12% Similarity=-0.089 Sum_probs=34.8
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-+...+.++.|+-+.+++..+.+++..+..+|..+...|++..|..++++
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444556677777777777766666555556677777777777777776654
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=89.18 E-value=2.6 Score=39.08 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHh-----hc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAE-----QK 97 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA-----~c 97 (109)
++.....++.++.++.|+-+-++.+.+.+ ++.-.+.+|.+|+..|++..|...+++- .+...++.-+|..+ .-
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence 33445567789999999999999999987 6778899999999999999999988762 12233444334333 33
Q ss_pred chhHHHhh
Q 042077 98 NFNEKYLE 105 (109)
Q Consensus 98 ~~~~al~~ 105 (109)
.+++|+..
T Consensus 544 ~~~~Al~~ 551 (1157)
T PRK11447 544 RDRAALAH 551 (1157)
T ss_pred CHHHHHHH
Confidence 35555544
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.49 E-value=2.1 Score=33.40 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=30.6
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
++.+++++.|+=+.++++...+ ++...+.+|.++...|++.+|...+++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455666666666666666554 344556666666667777666666655
No 52
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.29 E-value=0.56 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 61 QAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 61 LAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
|++.|+..++|..|...+.+- .+.+.++...+..|.|++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 40 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF 40 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 578899999999999998874 445678888888888874
No 53
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=86.57 E-value=2.8 Score=36.28 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=58.9
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhc--------ch
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQK--------NF 99 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c--------~~ 99 (109)
.+++--.++|+.|+-+-|+.+..|| .++--++-|.+|-..|++..|...+.... .-.+.=|||-.+| .+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar--~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR--ELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hCChhhHHHHHHHHHHHHHCCCH
Confidence 3444456789999999999999998 57777788999999999999999887643 2345667777766 36
Q ss_pred hHHHhhhh
Q 042077 100 NEKYLEIE 107 (109)
Q Consensus 100 ~~al~~~~ 107 (109)
++|..++.
T Consensus 279 e~A~~~~~ 286 (517)
T PF12569_consen 279 EEAEKTAS 286 (517)
T ss_pred HHHHHHHH
Confidence 67766654
No 54
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.41 E-value=3.9 Score=29.94 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh---hHHHH
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR---FRYLA 94 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~---crYLa 94 (109)
+.|-.--.+.|.++.|+.|+-.=++|-+=-+ .+..-.+|+-+||.+|+|.-|...+++. .|..+|+. --|+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 4455566788999999999988888877654 4679999999999999999999988773 44455553 45666
Q ss_pred hhcchhH
Q 042077 95 EQKNFNE 101 (109)
Q Consensus 95 A~c~~~~ 101 (109)
|.+.|+.
T Consensus 91 gL~~~~~ 97 (142)
T PF13512_consen 91 GLSYYEQ 97 (142)
T ss_pred HHHHHHH
Confidence 7777654
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=86.26 E-value=4.2 Score=36.07 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=26.2
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-.+..+.++.|+-..++++...+ +++ .+.+|.++...|++..|+..+++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455555555555555555544 333 55555555555555555555543
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=86.03 E-value=2.2 Score=33.28 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=39.5
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcCC-chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~~-~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+...+.|+.|+=.-++.+.+.++ +...+.+|.+++..|+|..|...+++
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456678888888888888888774 44557788888888888888887766
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=85.97 E-value=2.4 Score=37.90 Aligned_cols=47 Identities=2% Similarity=-0.140 Sum_probs=43.9
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.++.++.|+.++++++...+ +++-.+.+|.++-..|+|..|..+.++
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 48899999999999999997 788999999999999999999998877
No 58
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.84 E-value=5.9 Score=24.09 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhc---CC--c---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALT---ND--P---TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als---~~--~---~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+..+-.-+..++.|+.|+=+-+|.+.+. |+ | ...+-+|.|+...|++..|...+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334555566678999999999999988773 22 1 2456789999999999999998875
No 59
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.25 E-value=0.61 Score=27.89 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=35.9
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcchh
Q 042077 54 DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNFN 100 (109)
Q Consensus 54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~~ 100 (109)
++.-.+.+|.+++..|+|..|+..+++. .+...++...+-.|.|++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK 49 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456678999999999999999988773 3345667777777777654
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=85.13 E-value=4.1 Score=35.63 Aligned_cols=59 Identities=5% Similarity=0.004 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-+|..+...+.++.++.|+=..+.+++..+ +++..+.|+-+....|++..|...+++
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~ 101 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNK 101 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHH
Confidence 44455555555555555555555555555554 444555555555555555555555544
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.72 E-value=4.8 Score=35.73 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC-chhHHHHHHHHhhcCChHHHHHHHhc-CCCCCCChhh-HHHHhhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA-SKIVPRDLRF-RYLAEQK 97 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~~dv~lLAq~~y~~gqy~RA~~LL~~-~~L~~~~~~c-rYLaA~c 97 (109)
++-+.=+--.+++.+-++.||=+-||..-+-++ ..=-.+.|.|+-++|+|+||+.+-+. +.-....+-| ++|.--|
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 344444456789999999999999998777664 44567789999999999999998764 1113567788 5554333
No 62
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.46 E-value=11 Score=28.08 Aligned_cols=80 Identities=10% Similarity=-0.087 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCCCC-CChhhHHHHhhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKIVP-RDLRFRYLAEQK 97 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~-~~~~crYLaA~c 97 (109)
+.+--|...++-.+......++.=+=|-+-.+.+ .++=-..-+-.+...|+|.-|.+++++-.-.. .++.|+=|.|.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 4566677788888888999999888888888887 55545556778899999999999999843222 348899999999
Q ss_pred ch
Q 042077 98 NF 99 (109)
Q Consensus 98 ~~ 99 (109)
++
T Consensus 88 L~ 89 (153)
T TIGR02561 88 LN 89 (153)
T ss_pred HH
Confidence 85
No 63
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.36 E-value=2 Score=21.97 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=20.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHh
Q 042077 56 TGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 56 ~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
.-.+.||.+++..|++..|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456889999999999999998875
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=84.32 E-value=2.5 Score=34.36 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
.+-++.+++|+.|+=..+++....+ +|.-..+++++|...|++..|..++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5677888888888888888888887 67788888888888888888885544
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=83.86 E-value=3.5 Score=33.56 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=46.5
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+-.+.+++|+.|.=..+++....| +|.-..++++++...|++..|..++.+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46677889999999999999999987 677888999999999999988887765
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=83.74 E-value=5.5 Score=31.08 Aligned_cols=74 Identities=9% Similarity=-0.046 Sum_probs=51.9
Q ss_pred HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc-----chhHHHhh
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK-----NFNEKYLE 105 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c-----~~~~al~~ 105 (109)
...+.++.|+-.-++.+.+.+ ++.--+.+|.++...|+|..|...+++. .+...+..-.+-.|.+ .+++|+..
T Consensus 75 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 75 DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456888899988899999887 6778889999999999999999987663 2233333333333333 35555543
Q ss_pred h
Q 042077 106 I 106 (109)
Q Consensus 106 ~ 106 (109)
.
T Consensus 155 ~ 155 (296)
T PRK11189 155 L 155 (296)
T ss_pred H
Confidence 3
No 67
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=83.32 E-value=9.6 Score=33.84 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=60.2
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc-----chh
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK-----NFN 100 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c-----~~~ 100 (109)
...-.+..+.++.|+-..++++...+ +++-.+.+|.++...|++.+|...+++. .+.+.++.-++..|.. .|+
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence 44455678999999999999999887 7788899999999999999999999874 3345566666655543 355
Q ss_pred HHHhhh
Q 042077 101 EKYLEI 106 (109)
Q Consensus 101 ~al~~~ 106 (109)
+|...+
T Consensus 445 ~A~~~~ 450 (765)
T PRK10049 445 QMDVLT 450 (765)
T ss_pred HHHHHH
Confidence 555444
No 68
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=83.31 E-value=3.9 Score=30.39 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 38 YSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 38 Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
++.|+-+-++++...+ ++.-.+.||.+++..|+|..|....++
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6899999999999997 788999999999999999999998876
No 69
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.25 E-value=1.8 Score=20.12 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 56 TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 56 ~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+.+|.+++..|++..|...++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567899999999999999987765
No 70
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.20 E-value=3.7 Score=32.31 Aligned_cols=51 Identities=4% Similarity=-0.023 Sum_probs=43.1
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+..++.|+.|+....+++..-+ .++..+.+|.++...|++..|...+++
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345778899999999999998765 366788899999999999999998875
No 71
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=83.17 E-value=3.1 Score=30.94 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=42.0
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.++.|+.||..=.+...+.+ +|.-.|-+|+|++..|+..-|..-++.
T Consensus 81 ~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46789999999999999996 899999999999999999988876664
No 72
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.27 E-value=1.3 Score=35.45 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
+-..--+.+..+.|..|.=---+-+.-=+ .|+.-|||++++|..|.|.+|....-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~ 202 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFA 202 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHH
Confidence 33333444445568887522222222112 58899999999999999999988554
No 73
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.68 E-value=19 Score=26.90 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCC-CCCChhhHHHHhh
Q 042077 19 KEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKI-VPRDLRFRYLAEQ 96 (109)
Q Consensus 19 ~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L-~~~~~~crYLaA~ 96 (109)
++.+.-|...+.-.+..+..+++.=+=+-+-.|.| .++=-..-|..+...|+|.-|..+|+.-.- ....+.|+=|.|.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 45677788888888889988888888888888887 677667788999999999999999987210 1346789999999
Q ss_pred cchh
Q 042077 97 KNFN 100 (109)
Q Consensus 97 c~~~ 100 (109)
|++.
T Consensus 87 CL~~ 90 (160)
T PF09613_consen 87 CLYA 90 (160)
T ss_pred HHHH
Confidence 9853
No 74
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=79.75 E-value=13 Score=25.57 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=42.9
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcCCch----hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTNDPT----GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~~~~----dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+-..+.+++.|+.|+=.=+++..-+++|. -.+.||.+++..|+|..|+..|+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34556678999999888888888665543 567799999999999999999976
No 75
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=79.25 E-value=11 Score=30.06 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh---hHH
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR---FRY 92 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~---crY 92 (109)
..+.|-.-..+.|+.+.|++|+=.=+++-+-.+ ++.....||.++|.+|+|.-|+..+.+. .+.++|+- -.|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 367788889999999999999999999988775 4679999999999999999999988874 33444443 366
Q ss_pred HHhhcc
Q 042077 93 LAEQKN 98 (109)
Q Consensus 93 LaA~c~ 98 (109)
|.+.+.
T Consensus 113 lkgLs~ 118 (254)
T COG4105 113 LKGLSY 118 (254)
T ss_pred HHHHHH
Confidence 777664
No 76
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=79.08 E-value=1.7 Score=25.79 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=31.6
Q ss_pred HhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHhhhh
Q 042077 65 LFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYLEIE 107 (109)
Q Consensus 65 ~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~~~~ 107 (109)
++..|+|..|+.++++- ...+.+..-++..|.|+ +++|....+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46789999999988873 23456788888899987 556666554
No 77
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=78.57 E-value=13 Score=34.75 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=38.0
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+...+.++.|+-+.++.+.+.+ ++.-.+.+|.++...|++..|+..+++. .+.+.++...+-.|.++
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455666666666666666665 4555566666666666666666665542 22234444445444443
No 78
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.80 E-value=3.5 Score=23.19 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.0
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHh
Q 042077 55 PTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 55 ~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
|+.+|-+|-+++..|+|..|.++.+
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4678899999999999999999854
No 79
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=77.46 E-value=18 Score=33.77 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc-----chhHHHhhh
Q 042077 36 HLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK-----NFNEKYLEI 106 (109)
Q Consensus 36 h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c-----~~~~al~~~ 106 (109)
+.++.|+-+-++.+.+.++++..+-+|.++...|++..|...+++. .+.+.++.-.+-.|.+ .+++|+...
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999999999998888778888999999999999999988763 3345555555544433 355555443
No 80
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=77.06 E-value=8.8 Score=35.64 Aligned_cols=51 Identities=14% Similarity=-0.024 Sum_probs=46.1
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-++..+.++.|+=..++++.+.+ +++-.+.||.+++..|++..|...+++
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456788999999999999999987 778889999999999999999998876
No 81
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=76.67 E-value=8.3 Score=27.11 Aligned_cols=51 Identities=8% Similarity=-0.141 Sum_probs=39.5
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHh-------hcCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALF-------LGRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y-------~~gqy~RA~~LL~~ 80 (109)
.-+...+.++.|+...++.+.+.+ .++..+.+|.+++ ..|++..|...+.+
T Consensus 80 ~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 80 LIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 334557899999999999999876 5667778888888 77788877666543
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.62 E-value=5.2 Score=33.78 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=36.1
Q ss_pred hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 35 KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.++|+.|+==-.-.+-.+| .|-=+|-+|.|+|+.|||..|+.+++.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4677777754445566667 888999999999999999999988763
No 83
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=75.91 E-value=14 Score=31.02 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=46.1
Q ss_pred hCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCC-CC-----ChhhHHHHhhcchhHHHhhh
Q 042077 35 KHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIV-PR-----DLRFRYLAEQKNFNEKYLEI 106 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~-~~-----~~~crYLaA~c~~~~al~~~ 106 (109)
.+.|+.|+=+-+++.. .+|+-+.++|+++...++-..|+.++++.=.. +. +.+.++|..+-.|+.|+..+
T Consensus 182 t~~~~~ai~lle~L~~--~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE--RDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred cccHHHHHHHHHHHHh--cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4677888877777654 35777888888888888888888887763100 01 23556666666666666554
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=75.86 E-value=15 Score=25.93 Aligned_cols=48 Identities=13% Similarity=0.008 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChH
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYR 72 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~ 72 (109)
+..+-.-+...++|+.|+-+.+|.+.+.+ ++...+.+|.+++..|+..
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 44444556678999999999999999887 5667788999999988843
No 85
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.69 E-value=4.3 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 56 TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 56 ~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+-+|.||-.+|+.|+|..|...+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~ 26 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDA 26 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3479999999999999999998775
No 86
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=75.61 E-value=3.4 Score=22.41 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=18.7
Q ss_pred HHHHHHHhhcCChHHHHHHHhc
Q 042077 59 YMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 59 ~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-||.+|...|+|.+|+.+.++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4689999999999999998775
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=74.59 E-value=7.1 Score=28.50 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=42.2
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-Cch---hHHHHHHHHhhc--------CChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPT---GVYMQAQALFLG--------RHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~---dv~lLAq~~y~~--------gqy~RA~~LL~~ 80 (109)
.-+..++.|+.|+=..++++...+ ++. ..|.++.|++.. |++..|...+++
T Consensus 78 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~ 140 (235)
T TIGR03302 78 YAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE 140 (235)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 345667899999999999999997 444 578999999987 889889888876
No 88
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.47 E-value=5 Score=20.81 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 57 GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 57 dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+.+|.+++..|+|..|+...++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHH
Confidence 457899999999999999998876
No 89
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.04 E-value=5.4 Score=20.55 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 57 GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 57 dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
--+.+|.+|...|++..|...+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357899999999999999998876
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=73.47 E-value=21 Score=32.71 Aligned_cols=49 Identities=4% Similarity=-0.111 Sum_probs=21.1
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.++++|+.|+=+-+|++...+ +|+-.+-||..+...|++..|+..+++
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 3344444444444444444443 333333334444444444444444433
No 91
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.12 E-value=5.7 Score=20.94 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 57 GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 57 dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
...-||.+|+..|+|..|..+.++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHH
Confidence 356799999999999999998876
No 92
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=72.13 E-value=5.4 Score=30.23 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=11.0
Q ss_pred HHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 33 VSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+.|+.|+=.+++.+.-+++|.-...++++++..|++.++..+|++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777777666665555666666666677777777777666655
No 93
>PRK15331 chaperone protein SicA; Provisional
Probab=71.11 E-value=6.5 Score=29.53 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=40.3
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+.+|+.|+..=.....++. ||.-+|..|+|++..|+...|..-+..
T Consensus 83 ~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 83 LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 46789999988888777774 899999999999999999999887654
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.55 E-value=8.4 Score=33.26 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcCCc--hhHHHHHHHHhhcCChHHHHHHH
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTNDP--TGVYMQAQALFLGRHYRRPFHLL 78 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~~~--~dv~lLAq~~y~~gqy~RA~~LL 78 (109)
..|.|.+..|+-|+=+-+--..+.... .--.|+|.|+|+-|.|.+|...-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y 80 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVY 80 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHH
Confidence 467777888888876666544544322 23468888888888888887643
No 95
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=69.83 E-value=17 Score=20.19 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALT 52 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als 52 (109)
+.+..|+.....+..+..|+.|..+=|++-.+.
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999987763
No 96
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=69.63 E-value=14 Score=31.96 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=45.7
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcCCchh----HHHHHHHHhhcCChHHHHHHHhcC
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTNDPTG----VYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~~~~d----v~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
+-.-+...+.|+.|+=..++.+.+.++... -|-+|-||-..|++..|+..+++.
T Consensus 81 LG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 81 LGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344456789999999999999999885443 699999999999999999988873
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.27 E-value=11 Score=33.75 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHH-HHHHHhhcCChHHHHHHHhcCC
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYM-QAQALFLGRHYRRPFHLLNASK 82 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~l-LAq~~y~~gqy~RA~~LL~~~~ 82 (109)
+..|=.=+..+..++-|+-|+=-++||+...+++.|++- =--|+...++|..|+.+++.++
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 355666677777888888888888888888876555443 3346777888888888887765
No 98
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.90 E-value=25 Score=21.72 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 19 KEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 19 ~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+++++.+|.++||++++=+ .-.-|...|+|.+|...|+.
T Consensus 10 ~~~~~~lR~~RHD~~NhLq-----------------------vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 10 EELIDSLRAQRHDFLNHLQ-----------------------VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHH-----------------------HHHHHHHCCCHHHHHHHHHH
Confidence 5789999999999988722 23456677888888877764
No 99
>PLN03077 Protein ECB2; Provisional
Probab=68.68 E-value=26 Score=31.20 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHH---hcCCCCCCChhhHHH
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLL---NASKIVPRDLRFRYL 93 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL---~~~~L~~~~~~crYL 93 (109)
...++.-|-.++..+-|...++|++.+.+ ++..-.+|+.+|...|++..|..+. +..++ .+.++|-.+
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~-~k~~g~s~i 731 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL-TVDPGCSWV 731 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC-CCCCCccEE
Confidence 45566667778888999999999999987 5666677899999999999888765 44663 666666443
No 100
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=68.49 E-value=19 Score=31.32 Aligned_cols=67 Identities=6% Similarity=0.043 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh---cCCCCCCChhhHH
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN---ASKIVPRDLRFRY 92 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~---~~~L~~~~~~crY 92 (109)
...++.-|-.++.++.|...++++..+.+ ++..-..|+..|...|++..|..+++ +.|+ .+.++|-+
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~-~k~~g~s~ 567 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL-SMHPACTW 567 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC-ccCCCeeE
Confidence 56677777889999999999999998887 45666788999999999999999875 4563 45556543
No 101
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=68.29 E-value=15 Score=31.74 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=44.9
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
..+.+++++.|.=..+|.+.+.++...-.++|+++...|++..|....++.
T Consensus 429 ~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 429 QALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345689999999999999999988777888899999999999999988763
No 102
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=66.83 E-value=26 Score=30.89 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=48.2
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCC
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASK 82 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~ 82 (109)
+.--.++.|.-+.+++.=+....|+|...=++|-|++-+..|..|...+++=+
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44456899999999999999999999999999999999999999999998744
No 103
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=66.81 E-value=24 Score=28.72 Aligned_cols=45 Identities=11% Similarity=-0.017 Sum_probs=30.3
Q ss_pred hCCchhHHHHHHHHHhhcC-Cc--hhHHHHHHHHhhcCChHHHHHHHh
Q 042077 35 KHLYSSAIFFADKIAALTN-DP--TGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~-~~--~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
....+.++=..+|.+...+ +| .-...||.++++.|+|..|...++
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3455667777777776665 45 334457777777777777777777
No 104
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=66.76 E-value=12 Score=32.55 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHhhhh
Q 042077 58 VYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYLEIE 107 (109)
Q Consensus 58 v~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~~~~ 107 (109)
.|.|||.|-..|+|.+|++.|.+. ...++.+-.-++-|+.+ +++|...++
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 378899999999999999999864 33355566666667654 667666554
No 105
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=66.60 E-value=4.2 Score=35.65 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHhcCCCCCC----ChhhHHHHhh
Q 042077 56 TGVYMQAQALFLGRHYRRPFHLLNASKIVPR----DLRFRYLAEQ 96 (109)
Q Consensus 56 ~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~----~~~crYLaA~ 96 (109)
.|.|+||++||-.++|.||.+.|++..- .+ ++-|+||++-
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s-~k~~FL~lysk~La~~ 122 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKS-KKSAFLRLYSKYLAGE 122 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcch-HHHHHHHHHHHHHhhh
Confidence 4899999999999999999999998531 11 3457777653
No 106
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.49 E-value=20 Score=25.97 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR 69 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g 69 (109)
.+++-...+.+++++.|.-|+=++|.++...+ +.+...+.|++|-..|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777777665 4556666666664433
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=66.46 E-value=24 Score=27.08 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=41.7
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcCCchh-----HHHHHHHHhhcCChHHHHHHHhcC
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTNDPTG-----VYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~~~~d-----v~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
.+=+..++.++.|+=+.++.+...+.+.+ -+.+|.++...|++..|..++++.
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456788999999999999887753222 235899999999999999999874
No 108
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=66.23 E-value=16 Score=30.99 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cch-hHHHHHHHHhhcCCh-------HHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPT-GVYMQAQALFLGRHY-------RRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~-dv~lLAq~~y~~gqy-------~RA~~LL~~ 80 (109)
+=.+.|-++.+++|+.|.-..+++...++ ++. -.|..|-|+...|+. ..|..++++
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 33566778899999999999999999888 443 788889999999999 888888775
No 109
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=65.07 E-value=8.2 Score=23.43 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 57 GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 57 dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-.+.+|.+|+..|+|.+|+..+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356799999999999999988775
No 110
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=64.96 E-value=18 Score=29.41 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=39.1
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHH
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLA 94 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLa 94 (109)
....++.|+=.+++...-.+ ||+-.+.+|+.++..|+|..|...+++. ...+.+..|..|+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La 368 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLA 368 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 44677777777777776665 4555667777888888887777776653 2223444555444
No 111
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.76 E-value=14 Score=26.92 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 37 LYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 37 ~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
.-...+=||+|++.-.++|+-..-++.++...|+..+|...+++.
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566789999988899998889999999999999999888763
No 112
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.22 E-value=13 Score=24.55 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=23.3
Q ss_pred HhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 49 AALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 49 ~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
++-.+ |++..|-||..+...|+|..|+..|-
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll 46 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLL 46 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344 66789999999999999999998553
No 113
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.84 E-value=15 Score=31.24 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHH-----HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 21 EIEKLRGLVRDC-----VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 21 ~~~~LR~~v~~~-----L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
....+|...+-. +-...|..|+=+++|++.+.+ ++...|.=|+++...|+|.-|...+++-
T Consensus 251 ~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 251 KAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455556555543 456789999999999999996 8999999999999999999999988873
No 114
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=63.73 E-value=5.4 Score=31.78 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=20.2
Q ss_pred HHhCCchhHHHHHHHHHhhcCCc
Q 042077 33 VSKHLYSSAIFFADKIAALTNDP 55 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~~~ 55 (109)
+-.|..+.|+|+|||++-|++.|
T Consensus 186 lVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 186 LVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred EEeCCHHHHHhhhCEEEEecCCC
Confidence 34599999999999999999866
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=63.56 E-value=33 Score=29.92 Aligned_cols=53 Identities=25% Similarity=0.120 Sum_probs=46.1
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
..=.+..+.++.|+=..+|.+++.+ ++-=...+|++|+..|++.+|+.+|++.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~ 400 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRY 400 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445778899999999999999998 4778889999999999999999999874
No 116
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=63.49 E-value=20 Score=19.91 Aligned_cols=38 Identities=24% Similarity=0.098 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHH
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQ 63 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq 63 (109)
..+-+-+..+++++.|+=+-+|++...+ +++-.+.||+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3456678889999999999999999997 5666666654
No 117
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=61.72 E-value=23 Score=30.99 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=48.5
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHhCCchhHHHH-HHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 8 IPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFF-ADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 8 ~~~d~~~~~~~~~~~~~LR~~v~~~L~~h~Y~tAiF~-ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+++|.-+.|+ ........+-+...|.|+.+.|. +++.-.+.++..=+--+|+|+|..|.+..|.-...+
T Consensus 188 ~~~~~~~dwl----s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 188 ATVPDHFDWL----SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred eecCCCccHH----HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 3455555554 35556666777889999999886 444444444555556678999999999999887765
No 118
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=59.61 E-value=42 Score=28.42 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=24.8
Q ss_pred HhCCchhHHHHHHHHHhhcCCchhH------HHHHHHHhhcCChHHHHHHHhc
Q 042077 34 SKHLYSSAIFFADKIAALTNDPTGV------YMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~~~~dv------~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
....|+.||=.|+|++.+++.+..+ .-||+.+..+.+..+|..++++
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3444555666666666666543322 2345555555566666655554
No 119
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=57.68 E-value=36 Score=27.45 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=52.8
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 9 PLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 9 ~~d~~~~~~~~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.+.+.+..++-...-++.+-.-++...+++.|.+.+++++.+.+ +|..+===|.+|.+-|-++-|..-++.
T Consensus 168 ~~~L~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 168 PEDLKQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 444444444433333444445556677899999999999999976 776666668899999999999998876
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=57.53 E-value=48 Score=28.63 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc-CCCCCCChhhHHHHhh
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA-SKIVPRDLRFRYLAEQ 96 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~-~~L~~~~~~crYLaA~ 96 (109)
.+||..+..+...+.+.+||=.-++|+-+.+ +..=.-.=|.||-..|++..|++=++- .+|-..+.---|=.++
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3466666677778899999999999998887 544444558999999999999987654 2343344433343333
No 121
>PRK10941 hypothetical protein; Provisional
Probab=56.41 E-value=73 Score=25.30 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-||.+..-++..+.++.|+=..|+++.+.+ +|...-=-|-+|++-|.++.|..=|+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44467777778999999999999999999997 676666678889999999999986653
No 122
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.67 E-value=25 Score=25.47 Aligned_cols=56 Identities=21% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 44 FADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 44 ~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
-|.|++.+-|+++.|.--|+-.+..|+|+-|.+|+..- -....+..-|.|.|.++-
T Consensus 59 ~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 59 EAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 57889999999999999999999999999999998751 112456678888887653
No 123
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.98 E-value=14 Score=27.48 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHh-hcC--CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 37 LYSSAIFFADKIAA-LTN--DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 37 ~Y~tAiF~ADKl~a-ls~--~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+-.|=+=+.++. .++ .-+-+|.||-.+|+.|||.++..++..
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 34456666778886 222 345899999999999999999998875
No 124
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=39 Score=27.51 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=20.9
Q ss_pred CCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHH
Q 042077 36 HLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLL 78 (109)
Q Consensus 36 h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL 78 (109)
++-..|.=.-++++.+++ ++...++||..+|..|+|..|....
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 333333333444444443 4445555555555555555555443
No 125
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.70 E-value=54 Score=28.14 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHhCCchhHHHHHHHHHh--hc--CCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcchhHHHhh
Q 042077 32 CVSKHLYSSAIFFADKIAA--LT--NDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLE 105 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~a--ls--~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~~~~al~~ 105 (109)
++..|+|..| +|-+- ++ +-|+.-.+|+++|-+-.|+-||+.++.. +|+....---||.+..-+.||+.+
T Consensus 233 ylrLgm~r~A----ekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~-gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 233 YLRLGMPRRA----EKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGE-GLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHhcChhhh----HHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhh-hhhcCCchhhhhhhhHHHHHHHHh
Confidence 5677888875 45433 33 2466777889999999999999988865 455554455677776665555443
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=47.70 E-value=1.1e+02 Score=24.29 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+-.-+||.=+.....|++|.++=+-+..-.+ +|.-..-+|-|+...|+|..|..+|..
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355566788877778889999999999765544 666777889999999999999999987
No 127
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=46.78 E-value=27 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALT 52 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als 52 (109)
|..|.+.+..|.++.|+-|+++....-
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPL 31 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHH
Confidence 556778888999999999999976644
No 128
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.29 E-value=72 Score=28.86 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhH--HHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc---
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGV--YMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN--- 98 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv--~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~--- 98 (109)
-+|.-|---+....|+.|+-+-+|-.+. +...+ |-=|-|.|+.|....|+..++ ++......-..|.|+-+
T Consensus 48 a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 48 AIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRL 123 (652)
T ss_pred hHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh--cccccchHHHHHHHHHHHHH
Confidence 3555555566688999998554443321 22233 467889999999999999998 44455555566666643
Q ss_pred --hhHHHhhhh
Q 042077 99 --FNEKYLEIE 107 (109)
Q Consensus 99 --~~~al~~~~ 107 (109)
|++++++-+
T Consensus 124 ~~ydealdiY~ 134 (652)
T KOG2376|consen 124 ERYDEALDIYQ 134 (652)
T ss_pred hhHHHHHHHHH
Confidence 677777643
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=45.97 E-value=23 Score=26.09 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHhc----CCCCCCChhhHHHHhhcch
Q 042077 54 DPTGVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~~crYLaA~c~~ 99 (109)
+++..|..|..++..|+|..|...+++ .+--...+...+..|.++|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y 53 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY 53 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 578999999999999999999998876 2111223456677777765
No 130
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=44.06 E-value=19 Score=26.34 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 54 DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+|.+.|.-|+-.+.+|+|..|...++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~ 35 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEA 35 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 678999999999999999999998876
No 131
>PRK14574 hmsH outer membrane protein; Provisional
Probab=43.58 E-value=1.7e+02 Score=26.96 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
.+..+..+...+..+.+..|+=..|+++...| ++.=...+|.++-..|.+.+|...++.. .+.+.+..-++-.|.+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 35556667778889999999999999999997 8888899999999999999999999763 3344555555544443
No 132
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.41 E-value=85 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..++-|.+.+.++-..++...+.++ .+.+|.-||..|+|..|..+++.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l-------------~~~~A~ey~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYL-------------SLEMAEEYFRLGDYDKALKLLEP 203 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHH-------------HHHHHHHHHHCCCHHHHHHHHHH
Confidence 4577788888877777775555544 46789999999999999999886
No 133
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.17 E-value=89 Score=25.09 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=37.1
Q ss_pred HHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 33 VSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..++.|+.|.-.--+++.--+ .|+..|-||.|+...|+...|...++.
T Consensus 189 y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 189 YAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456666666666666666544 478999999999999999999987765
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=41.67 E-value=90 Score=27.09 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCCCC-CChhhHHHHhh
Q 042077 39 SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKIVP-RDLRFRYLAEQ 96 (109)
Q Consensus 39 ~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~-~~~~crYLaA~ 96 (109)
..|.=.|+|.+.+.+ ||-..+++|.++...|++..|..++++..... .+..--|+.|.
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 457778888888886 78888899999999999999998888754333 34444555554
No 135
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.51 E-value=16 Score=31.25 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT 56 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~ 56 (109)
+--||..+..+..+..|.||..+|.||+.+.++++
T Consensus 300 ~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 300 ILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 56689999999999999999999999999987664
No 136
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=40.62 E-value=59 Score=30.49 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+++.+.|+.|+=.=+|++-+.+ +.+...-||..+...|++..|+..|.+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 4556677777777777777666 445566777777777777777777776
No 137
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.42 E-value=28 Score=31.17 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=27.5
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHhcCCC
Q 042077 53 NDPTGVYMQAQALFLGRHYRRPFHLLNASKI 83 (109)
Q Consensus 53 ~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L 83 (109)
+++..+++=+|-+|..|+|..|..+|-+.+.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni 268 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNI 268 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhccc
Confidence 4788999999999999999999999877554
No 138
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.33 E-value=1.3e+02 Score=24.88 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHH---------------hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCC
Q 042077 22 IEKLRGLVRDCVS---------------KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKI 83 (109)
Q Consensus 22 ~~~LR~~v~~~L~---------------~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L 83 (109)
++++|.|+..-+- .+.+..|.=.=+-+....+ +.+-+..||.||...|+...|..+|..-++
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 5566766664433 4555555443333333343 677899999999999999999999987443
No 139
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=40.24 E-value=71 Score=29.57 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CC-CCCChhhHHHHhhc-----chhHHHhhhh
Q 042077 39 SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KI-VPRDLRFRYLAEQK-----NFNEKYLEIE 107 (109)
Q Consensus 39 ~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L-~~~~~~crYLaA~c-----~~~~al~~~~ 107 (109)
+-+++-=|+.+...+ ||+-+|-||--|-..+|..-|...+++. .+ -+.++.|-.|.|.| .+.+|+++++
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 456677777777776 7888888888888888888888777653 22 23466666666655 3677777654
No 140
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=39.35 E-value=33 Score=24.36 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=25.9
Q ss_pred CCCCcccccchhhhHHHHHHHHHHHHHHHHhC
Q 042077 5 EPNIPLDLQFHNEKKEEIEKLRGLVRDCVSKH 36 (109)
Q Consensus 5 ~~~~~~d~~~~~~~~~~~~~LR~~v~~~L~~h 36 (109)
--|++.|.--.+-.+++++.+++++.+++++.
T Consensus 78 ~LGI~VD~RRr~~~~en~eal~k~ik~ll~~~ 109 (113)
T COG4352 78 TLGIAVDHRRRNRNPENFEALVKRIKELLEKI 109 (113)
T ss_pred hhCcceehhhccCCHHHHHHHHHHHHHHHhcC
Confidence 35778887777766899999999999998763
No 141
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=39.19 E-value=96 Score=26.34 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+..-++.+.++.....+.|.+|-.|.+...+ +...--.|+.+....|+|..|+..+.+
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 3455566777777777788888888888777775 667888888888888888888887776
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=37.49 E-value=52 Score=16.40 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=16.9
Q ss_pred HHHHHHhhcCChHHHHHHHhc
Q 042077 60 MQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 60 lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+..++...|++.+|..+++.
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 356788899999999888864
No 143
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.89 E-value=1.4e+02 Score=25.95 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHH-HhCCchhHHHHHHHHHhhcC-Cch-hHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhh-HHHH
Q 042077 20 EEIEKLRGLVRDCV-SKHLYSSAIFFADKIAALTN-DPT-GVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRF-RYLA 94 (109)
Q Consensus 20 ~~~~~LR~~v~~~L-~~h~Y~tAiF~ADKl~als~-~~~-dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~c-rYLa 94 (109)
+-.+.+..||-.|- ..+.|+.|+=.=.-+-.-++ +.+ +|+ ||-|+|.-|+|..|..+-.+. .+++.| |.|.
T Consensus 54 EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn-LAcc~FyLg~Y~eA~~~~~ka---~k~pL~~RLlf 128 (557)
T KOG3785|consen 54 EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN-LACCKFYLGQYIEAKSIAEKA---PKTPLCIRLLF 128 (557)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh-HHHHHHHHHHHHHHHHHHhhC---CCChHHHHHHH
Confidence 45678999998875 56889988754444433222 222 444 789999999999999999885 467777 4443
No 144
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=36.62 E-value=62 Score=16.38 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=17.0
Q ss_pred chhHHHHHHHHhhc----CChHHHHHHHhc
Q 042077 55 PTGVYMQAQALFLG----RHYRRPFHLLNA 80 (109)
Q Consensus 55 ~~dv~lLAq~~y~~----gqy~RA~~LL~~ 80 (109)
|+..|.||.+|+.. .++.+|...+++
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~ 30 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKK 30 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 34567788887654 266777776654
No 145
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.09 E-value=12 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=19.9
Q ss_pred HHhCCchhHHHHHHHHHhhcCCc
Q 042077 33 VSKHLYSSAIFFADKIAALTNDP 55 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~~~ 55 (109)
+-.|..+.|+|+|++++-|++.|
T Consensus 188 liTH~ieEAlflatrLvvlsp~p 210 (259)
T COG4525 188 LITHDIEEALFLATRLVVLSPGP 210 (259)
T ss_pred EEeccHHHHHhhhheeEEecCCC
Confidence 34689999999999999999754
No 146
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.06 E-value=1.3e+02 Score=27.69 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=52.8
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHH---HHhhcCChHHHHHHHhcCCCCCC--------------ChhhH
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQ---ALFLGRHYRRPFHLLNASKIVPR--------------DLRFR 91 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq---~~y~~gqy~RA~~LL~~~~L~~~--------------~~~cr 91 (109)
|-++.+.|.|.--.-+-+-.+.+-+.|+||-++-. .|...|+..||+...-+.+- .+ +-+|.
T Consensus 212 v~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~-~~~i~e~~~a~~Dp~~kKQ~~ 290 (881)
T COG5110 212 VLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQK-SKEIIEYVRAIEDPDYKKQCL 290 (881)
T ss_pred hhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhccc-HHHHHHHHHhccChHHHHHHH
Confidence 56788888888888887777777788999998875 67889999999986544220 11 24799
Q ss_pred HHHhhcc
Q 042077 92 YLAEQKN 98 (109)
Q Consensus 92 YLaA~c~ 98 (109)
|+.|+|.
T Consensus 291 YiLArq~ 297 (881)
T COG5110 291 YILARQN 297 (881)
T ss_pred HHHHhcc
Confidence 9999986
No 147
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=35.75 E-value=68 Score=16.63 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCchhHHH
Q 042077 23 EKLRGLVRDCVSKHLYSSAIF 43 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF 43 (109)
+.|-.+|+++|..+-|..+..
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~ 21 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAK 21 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHH
Confidence 356788999999998887754
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=35.64 E-value=87 Score=24.02 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=32.6
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-Cc---hhHHHHHHHHhhcC
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DP---TGVYMQAQALFLGR 69 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~---~dv~lLAq~~y~~g 69 (109)
+..-+..++.|+.|+.+.++.+...| +| .-.|.+|.|++..+
T Consensus 75 la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 75 LIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 34455778999999999999999987 33 36889998865543
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=35.48 E-value=1.5e+02 Score=20.53 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhcCCC-CCC---ChhhHHHHhhcc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNASKI-VPR---DLRFRYLAEQKN 98 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~~~L-~~~---~~~crYLaA~c~ 98 (109)
.|..|. .|..+.|+=+-++.+...-+ ..-..-||.+|...|++..|..+|++.-- ... +..-+++.|-++
T Consensus 8 A~a~d~--~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDS--LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 444444 46688888888888775422 23566789999999999999998876311 012 445567777666
Q ss_pred h-----hHHHhh
Q 042077 99 F-----NEKYLE 105 (109)
Q Consensus 99 ~-----~~al~~ 105 (109)
+ +||+..
T Consensus 86 ~~~gr~~eAl~~ 97 (120)
T PF12688_consen 86 YNLGRPKEALEW 97 (120)
T ss_pred HHCCCHHHHHHH
Confidence 3 455543
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=35.27 E-value=94 Score=26.57 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCchhHHHHHHH--HHhhcCCchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 27 GLVRDCVSKHLYSSAIFFADK--IAALTNDPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADK--l~als~~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
.||+.||+.+.++.|+-.-.. .+-+-+|+-+..+|-..++..|+|.-|..+..
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~ 162 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVAT 162 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHH
Confidence 688999999999999876543 34444678899999999999999999988664
No 151
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=34.43 E-value=73 Score=27.61 Aligned_cols=52 Identities=8% Similarity=0.005 Sum_probs=34.2
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh---hHHHHhhcc-----hhHHHhhh
Q 042077 55 PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR---FRYLAEQKN-----FNEKYLEI 106 (109)
Q Consensus 55 ~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~---crYLaA~c~-----~~~al~~~ 106 (109)
+++.+-+|.+|+..|+|..|+..+++. .+...+.. ..|-.|.|+ +++|++.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 457888999999999999999998773 22233331 234444443 55655544
No 152
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=34.33 E-value=1.6e+02 Score=25.57 Aligned_cols=54 Identities=6% Similarity=0.009 Sum_probs=27.1
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC---CchhHHHHHHHHhhcCChHHHHHHHhcCC
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN---DPTGVYMQAQALFLGRHYRRPFHLLNASK 82 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~---~~~dv~lLAq~~y~~gqy~RA~~LL~~~~ 82 (109)
+.-|...+.++.|.=+-+++..-.+ +...-..+...|.+.|++..|..++++-+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 3334444555555444444433222 22233445566666666666666666544
No 153
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.68 E-value=58 Score=19.03 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCChHHHHHHHhc
Q 042077 59 YMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 59 ~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+-||.+|...|.+..|..+|..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~e 24 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEE 24 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHH
Confidence 4689999999999999999875
No 154
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.30 E-value=2.1e+02 Score=22.95 Aligned_cols=44 Identities=7% Similarity=-0.085 Sum_probs=38.4
Q ss_pred CchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 37 LYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 37 ~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-.|+.+-|..+.-++ ++.-..||...|..-|-..+|.....+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34568889999988887 889999999999999999999998865
No 155
>PLN03077 Protein ECB2; Provisional
Probab=33.04 E-value=2.1e+02 Score=25.55 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=30.1
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhc---CCchhHHHHHHHHhhcCChHHHHHHHhcCC
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALT---NDPTGVYMQAQALFLGRHYRRPFHLLNASK 82 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als---~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~ 82 (109)
++.-|...+.++.|.-+-+.+.... ++.+.-..+...|.+.|++..|..++++-+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3444555566666666555554222 233344455566666666666666666543
No 156
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.02 E-value=2.3e+02 Score=24.12 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=49.2
Q ss_pred HHHHHhCCchhHHHH-HHHHHhhcCCch-hHHHH---HHHHhhcCChHHHHHHHhc-CCCCCCChhhHHHHhhcchh
Q 042077 30 RDCVSKHLYSSAIFF-ADKIAALTNDPT-GVYMQ---AQALFLGRHYRRPFHLLNA-SKIVPRDLRFRYLAEQKNFN 100 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~-ADKl~als~~~~-dv~lL---Aq~~y~~gqy~RA~~LL~~-~~L~~~~~~crYLaA~c~~~ 100 (109)
..|...-.|+.|+-. .+=|-.-++||+ .+-++ |-|.+.-|+|++|+.=.+. ..+..+++.|+|=-|+|+++
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 345556677777643 444555556665 55555 3588999999999985544 35567899999999999854
No 157
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.55 E-value=1.3e+02 Score=25.72 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=45.3
Q ss_pred HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc-CCCCCCChhhHHHHhhcc-----hhHHHhh
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA-SKIVPRDLRFRYLAEQKN-----FNEKYLE 105 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~-~~L~~~~~~crYLaA~c~-----~~~al~~ 105 (109)
+.-+.|.+||=.----.--++ +-...-+||.|||+...|.-|...-.. ..+.++-.+-|.-.|+.+ |..||.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 336778888733111111112 335889999999999999888664332 223345556777777755 5577776
Q ss_pred hh
Q 042077 106 IE 107 (109)
Q Consensus 106 ~~ 107 (109)
..
T Consensus 101 ~~ 102 (459)
T KOG4340|consen 101 AF 102 (459)
T ss_pred HH
Confidence 54
No 158
>cd00103 IRF Interferon Regulatory Factor (IRF); also known as tryptophan pentad repeat. The family of IRF transcription factors is important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. The IRF family is characterized by a unique 'tryptophan cluster' DNA-binding region. Viral IRFs bind to cellular IRFs; block type I and II interferons and host IRF-mediated transcriptional activation.
Probab=32.53 E-value=12 Score=26.04 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHH
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKI 48 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl 48 (109)
+||.|+-..++.+.|. .++|.|+=
T Consensus 3 ~lr~WL~~~i~sg~yp-GL~W~d~e 26 (107)
T cd00103 3 RLRPWLVEQVDSGTYP-GLIWLDEE 26 (107)
T ss_pred chHHHHHHHhccCCCC-CCeEecCC
Confidence 6999999999999999 89999873
No 159
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=32.10 E-value=1.1e+02 Score=24.57 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cch---hHHHHHHHHhh
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPT---GVYMQAQALFL 67 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~---dv~lLAq~~y~ 67 (109)
+-.++.-+...+.|+.|++.+|+-..+-| +|+ -.|+-+.++|.
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 33466777889999999999999999987 454 56788888774
No 160
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.86 E-value=97 Score=28.03 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=52.6
Q ss_pred HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc-CCCCCCChhhHHHHhhc
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA-SKIVPRDLRFRYLAEQK 97 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~-~~L~~~~~~crYLaA~c 97 (109)
-..+..+.|+=+=||.+.+.+ ||--.|-=|+++|..+.|..|+..|.. +.++.+...--||.++-
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 345688999999999999997 999999999999999999999999876 23444444555676664
No 161
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=1.5e+02 Score=27.60 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCchhHHHHHH---HHhhcCChHHHHHHHhcCC---CC----------CCChhhHHHH
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQ---ALFLGRHYRRPFHLLNASK---IV----------PRDLRFRYLA 94 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq---~~y~~gqy~RA~~LL~~~~---L~----------~~~~~crYLa 94 (109)
++.+.+.|+--.-+=.-.+.+.+.|+|+-++=. .|..-++|.+|+.+.-+-+ .+ ...-+|.|+.
T Consensus 212 ~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymL 291 (878)
T KOG2005|consen 212 DYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYML 291 (878)
T ss_pred HHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHH
Confidence 444555555555444445555678999888864 6778899999988543311 00 0123799999
Q ss_pred hhcc
Q 042077 95 EQKN 98 (109)
Q Consensus 95 A~c~ 98 (109)
|+|-
T Consensus 292 aR~~ 295 (878)
T KOG2005|consen 292 ARHG 295 (878)
T ss_pred HhcC
Confidence 9986
No 162
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.59 E-value=1.1e+02 Score=26.41 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHhhcCCchhHHHHHHHHhhcC---ChHHHHHHHhcCCCCCCChhhHHHHhhcc
Q 042077 37 LYSSAIFFADKIAALTNDPTGVYMQAQALFLGR---HYRRPFHLLNASKIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 37 ~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~g---qy~RA~~LL~~~~L~~~~~~crYLaA~c~ 98 (109)
.++.|+++--| .+..+.|+..|.||.|+.... .+.+|.++...... ..++.-.|=.|.|+
T Consensus 308 d~~~A~~~~~~-aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~~A~~~la~~y 370 (552)
T KOG1550|consen 308 DYEKALKLYTK-AAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHILAIYRLALCY 370 (552)
T ss_pred cHHHHHHHHHH-HHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCChHHHHHHHHHH
Confidence 56788888766 445578999999999999988 56899998887543 23333334445554
No 163
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=30.71 E-value=59 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=31.4
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHhCCchhHH---HHHHHHHh
Q 042077 10 LDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAI---FFADKIAA 50 (109)
Q Consensus 10 ~d~~~~~~~~~~~~~LR~~v~~~L~~h~Y~tAi---F~ADKl~a 50 (109)
||-+..+++....+|||..+..+|.+...+..+ ..+.-..+
T Consensus 14 Ld~~a~~Lp~~i~~RL~aAR~~ALa~~k~~~~~~~~~~~~~~~~ 57 (131)
T PF12279_consen 14 LDESADDLPPDISERLAAARRQALARKKPEAPVATVQAPGLALA 57 (131)
T ss_pred hhcccccCCHHHHHHHHHHHHHHHHhccchhhhhhhhccchhcc
Confidence 455666777788999999999999999999885 34444333
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=30.40 E-value=60 Score=15.69 Aligned_cols=20 Identities=0% Similarity=0.114 Sum_probs=16.6
Q ss_pred HHHHHhhcCChHHHHHHHhc
Q 042077 61 QAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 61 LAq~~y~~gqy~RA~~LL~~ 80 (109)
+-++|...|++..|..++++
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 45788999999999998875
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=29.54 E-value=1.1e+02 Score=26.49 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=40.7
Q ss_pred hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 35 KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.++++.|+=|-|+...+++ .+...|+.|-.++.+|+..+|...+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3459999999999999998 566788899999999999999999987
No 166
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=29.51 E-value=1.1e+02 Score=29.25 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=46.3
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC---CchhHHHHHHHHhhcCChHHHHHHHhc-CCCCCCChh
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN---DPTGVYMQAQALFLGRHYRRPFHLLNA-SKIVPRDLR 89 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~---~~~dv~lLAq~~y~~gqy~RA~~LL~~-~~L~~~~~~ 89 (109)
+=++.+++|..||=.=++.+.... +++=+..||.++|..|.|+.|...+.. ..+.+..+.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 346788999999999999888875 677889999999999999999885543 333344433
No 167
>PF12854 PPR_1: PPR repeat
Probab=29.39 E-value=80 Score=16.78 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=18.4
Q ss_pred HHHHHHHhhcCChHHHHHHHhc
Q 042077 59 YMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 59 ~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-.|-.+|.+.|+...|..++++
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh
Confidence 3567899999999999999864
No 168
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.22 E-value=53 Score=22.45 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 57 GVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 57 dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
--.-|+.-|+..|++.+|+.++++-
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHH
Confidence 4456888999999999999999874
No 169
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.30 E-value=1.7e+02 Score=18.84 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHhCCchhHHHHHHHHHhhcC---C-c------hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN---D-P------TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~---~-~------~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
++..+.|.+|+=--.+.+.... + . .....+|.++..-|++..|...++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777777666666665553 1 1 2456789999999999999998876
No 170
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=28.07 E-value=86 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhh
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAAL 51 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~al 51 (109)
.++.+|+..+. ++.-.-+.|+|||+++=
T Consensus 55 ~tL~aL~~~~e----~~~l~q~afLAErLlAQ 82 (175)
T COG3923 55 QTLTALKQAVE----QDRLPQVAFLAERLLAQ 82 (175)
T ss_pred HHHHHHHHHHh----ccchHHHHHHHHHHHHH
Confidence 35666666665 67777899999998863
No 171
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.03 E-value=81 Score=15.30 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHhhcCChHHHHHHHhc
Q 042077 61 QAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 61 LAq~~y~~gqy~RA~~LL~~ 80 (109)
+-.+|.+.|++..|..+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 45678899999999998865
No 172
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=27.07 E-value=41 Score=24.60 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=42.9
Q ss_pred HHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC--CCCCCChhhHHHHhh--------cchhHHHh
Q 042077 46 DKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS--KIVPRDLRFRYLAEQ--------KNFNEKYL 104 (109)
Q Consensus 46 DKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~--~L~~~~~~crYLaA~--------c~~~~al~ 104 (109)
++|+++++-|-.. ++.-+-+.|++..=+.+|.+. +-....+.||.+..- |-|+++|.
T Consensus 25 n~L~titNmPI~R--F~~~L~~~g~~~~Ym~lL~~~fNp~~v~~vMCR~~iSV~wdG~lYDCDFNQ~l~ 91 (134)
T PF12345_consen 25 NNLFTITNMPIGR--FGSFLERSGNLEDYMELLVDAFNPANVEGVMCRSQISVDWDGYLYDCDFNQMLG 91 (134)
T ss_pred cchhhhhcCcHHH--HHHHHHHccCHHHHHHHHHHhcCHHHHhhcccccceeECCCCeEeCChhHHHcC
Confidence 5788999887554 478889999999999999763 112346899998753 77887765
No 173
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=26.68 E-value=1.2e+02 Score=23.41 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=29.2
Q ss_pred HHHhCCchhHHHHHHHHHhhc-C-CchhHHHHHHHHh-------hcC-ChHHHHHHHh
Q 042077 32 CVSKHLYSSAIFFADKIAALT-N-DPTGVYMQAQALF-------LGR-HYRRPFHLLN 79 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als-~-~~~dv~lLAq~~y-------~~g-qy~RA~~LL~ 79 (109)
++.++..+.|.++-.|+-.+- . +|+.+--||..+| ..+ +|.-|...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~ 60 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQ 60 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 455777788888888876665 2 6666666655444 444 6644444443
No 174
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=26.40 E-value=1.3e+02 Score=19.89 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=18.4
Q ss_pred HHHHHHhCCch-hHHHHHHHHHhh
Q 042077 29 VRDCVSKHLYS-SAIFFADKIAAL 51 (109)
Q Consensus 29 v~~~L~~h~Y~-tAiF~ADKl~al 51 (109)
++..+..|.|. ++--+|||++..
T Consensus 71 ik~aI~~G~Y~vd~~~iA~~ml~~ 94 (95)
T TIGR03824 71 IKAAIANGSYKVDAEKIADKLLDF 94 (95)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHhc
Confidence 44566699999 999999998753
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=25.54 E-value=3.1e+02 Score=25.92 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHH
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHL 77 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~L 77 (109)
...+-+..++..+.+.++|+.|+=..+..+...+ .+.--|.+|-.++..+++..+.-+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh
Confidence 3456677888899999999999999999888887 678889999999999999888765
No 176
>PRK10093 primosomal replication protein N''; Provisional
Probab=24.84 E-value=1.2e+02 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhh
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAAL 51 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~al 51 (109)
.++++|...|. .+....+.|++||+++=
T Consensus 51 ~~l~qL~~~~~----~~~~~~~~flaEkL~aQ 78 (171)
T PRK10093 51 DNLAALRHAVE----QQQLPQVAWLAEHLAAQ 78 (171)
T ss_pred HHHHHHHHHHh----cCcHHHHHHHHHHHHHH
Confidence 34555554444 66668899999998863
No 177
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=24.61 E-value=2.3e+02 Score=19.93 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=33.6
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHh
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAE 95 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA 95 (109)
.++++.+|.+-.|+=+=+++.+-.++.++.. -.+...|+.-....-... ...+.|+||.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~lA~~te----n~d~k~~yLl~ 62 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYKLAKKTE----NPDVKFRYLLG 62 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHHHHHhcc----CchHHHHHHHH
Confidence 3566667777777777777666666544433 234444554444333322 34567777765
No 178
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=24.33 E-value=3e+02 Score=20.43 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cch------hHHH-HH-------HHHhhcCChHHHHHHHhcCCCCCC
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPT------GVYM-QA-------QALFLGRHYRRPFHLLNASKIVPR 86 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~------dv~l-LA-------q~~y~~gqy~RA~~LL~~~~L~~~ 86 (109)
..+|+.+++ .|-..+...+|-+++++.+ .|. |++. |. +++...|++..|+.++++.+-...
T Consensus 45 ~~~L~qllq----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 45 FSQLHQLLQ----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHHHHh----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 455665555 7778888889999999876 321 3322 22 589999999999999988432334
Q ss_pred ChhhHHHHh
Q 042077 87 DLRFRYLAE 95 (109)
Q Consensus 87 ~~~crYLaA 95 (109)
-+.=++|-|
T Consensus 121 ~~~~~fLeA 129 (167)
T PF07035_consen 121 VPARKFLEA 129 (167)
T ss_pred CCHHHHHHH
Confidence 344455554
No 179
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.95 E-value=1.3e+02 Score=26.03 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=49.0
Q ss_pred CCchhHHHHHHHHHh------hcCCchhHHHHHHHHhhcC-----ChHHHHHHHhcCCCCCCChhhHHHHhhcchh
Q 042077 36 HLYSSAIFFADKIAA------LTNDPTGVYMQAQALFLGR-----HYRRPFHLLNASKIVPRDLRFRYLAEQKNFN 100 (109)
Q Consensus 36 h~Y~tAiF~ADKl~a------ls~~~~dv~lLAq~~y~~g-----qy~RA~~LL~~~~L~~~~~~crYLaA~c~~~ 100 (109)
...+.|++|-.+... ..+.|...+-+|.+|+... .+..|..+..+.. ...++.+.|+.|.|...
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELGNPDAQYLLGVLYET 337 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcCCchHHHHHHHHHHc
Confidence 356788888887654 2347888999999999975 5677888887754 45788999999998754
No 180
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=23.43 E-value=3.4e+02 Score=20.63 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-----CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-----DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-----~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-.-....-+-.++.++.|...-.++....+ .|.-.+..|+.+...|+...|+..|++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344455557779999999988888877542 567778899999999999999998864
No 181
>PF15310 VAD1-2: Vitamin A-deficiency (VAD) rat model signalling
Probab=22.39 E-value=25 Score=28.01 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHhhcC
Q 042077 38 YSSAIFFADKIAALTN 53 (109)
Q Consensus 38 Y~tAiF~ADKl~als~ 53 (109)
...=+|||||+.--+.
T Consensus 16 TSkHLFWadKliQaSE 31 (245)
T PF15310_consen 16 TSKHLFWADKLIQASE 31 (245)
T ss_pred ccccceeccchhhhhh
Confidence 3445899999887654
No 182
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.23 E-value=4.2e+02 Score=21.32 Aligned_cols=82 Identities=12% Similarity=-0.056 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCCch-hHHHHHHHHhhcCChHHH-------HHHHhcCCCCCCChhhHHHHhh
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPT-GVYMQAQALFLGRHYRRP-------FHLLNASKIVPRDLRFRYLAEQ 96 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~-dv~lLAq~~y~~gqy~RA-------~~LL~~~~L~~~~~~crYLaA~ 96 (109)
--.+--.+|.+|.+..|.=-=||.+...++.. .-..+|..|-.-|+..-| +.+=.+.+= .-+=---+|.++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd-VLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD-VLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc-hhhhhhHHHHhC
Confidence 33566789999999999999999999888554 445678888888875544 444333331 112234578888
Q ss_pred cchhHHHhhhh
Q 042077 97 KNFNEKYLEIE 107 (109)
Q Consensus 97 c~~~~al~~~~ 107 (109)
-.|++|+...+
T Consensus 117 g~~~eA~q~F~ 127 (250)
T COG3063 117 GRPEEAMQQFE 127 (250)
T ss_pred CChHHHHHHHH
Confidence 88888887654
No 183
>PLN03218 maturation of RBCL 1; Provisional
Probab=22.21 E-value=3.6e+02 Score=25.70 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcCCch--hHHHHHHHHhhcCChHHHHHHHh
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTNDPT--GVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~~~~--dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
..+|.-|...+.++.|+-+-+++....-.|+ .--.|..+|...|++..|..+++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555556666666655555544322222 33345556666666666666655
No 184
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=21.92 E-value=53 Score=26.42 Aligned_cols=24 Identities=42% Similarity=0.611 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCCCCChhhHHHHhhc
Q 042077 73 RPFHLLNASKIVPRDLRFRYLAEQK 97 (109)
Q Consensus 73 RA~~LL~~~~L~~~~~~crYLaA~c 97 (109)
-|..||+|+. +.+.+.++||+.+-
T Consensus 51 ~a~~LL~rkk-V~RelLFkYLa~kg 74 (262)
T PF15008_consen 51 DAEELLRRKK-VKRELLFKYLASKG 74 (262)
T ss_pred CHHHHHhccc-ccHHHHHHHHHHcC
Confidence 4668999887 68999999999873
No 185
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=21.83 E-value=1.1e+02 Score=15.67 Aligned_cols=26 Identities=15% Similarity=0.408 Sum_probs=14.1
Q ss_pred chhHHHHH--HHHhhcC-----ChHHHHHHHhc
Q 042077 55 PTGVYMQA--QALFLGR-----HYRRPFHLLNA 80 (109)
Q Consensus 55 ~~dv~lLA--q~~y~~g-----qy~RA~~LL~~ 80 (109)
|+..|.|| .+|+... ++.+|...+++
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~ 33 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEK 33 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHH
Confidence 34567777 4444443 24566665544
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=21.66 E-value=3e+02 Score=26.14 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC-chhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
.|.+|--.=|+|.++.++++.|+=-.+|++.=.|+ +-..-+=|-++++.|.+.-|..+|.-.
T Consensus 7 a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~ 69 (932)
T KOG2053|consen 7 AMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL 69 (932)
T ss_pred ccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh
Confidence 35666667799999999999999999999998874 445566688999999999999998764
No 187
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=21.44 E-value=2e+02 Score=27.52 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC----ChHHHHHHHhcC
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR----HYRRPFHLLNAS 81 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g----qy~RA~~LL~~~ 81 (109)
+-.+.+.+|-++.++.|+|--||++.--+ +++++.+||..|-..+ +-.+|..++.+.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 45678899999999999999999988776 7899999998887776 567777777663
No 188
>PF14774 FAM177: FAM177 family
Probab=21.41 E-value=1.7e+02 Score=20.81 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=33.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC--CchhHHHHHH
Q 042077 12 LQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN--DPTGVYMQAQ 63 (109)
Q Consensus 12 ~~~~~~~~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~--~~~dv~lLAq 63 (109)
+++++|+ -...++-|++. +....+..+-|+++|+.++-| +|.--|.+-.
T Consensus 55 ~dp~~l~--w~~~~~~~~~~-~~~~~l~~~d~~Ge~lA~~fGit~~KYqy~ide 105 (123)
T PF14774_consen 55 VDPSKLT--WGPWLWFWAWR-VGTKSLSGCDYLGEKLASFFGITSPKYQYAIDE 105 (123)
T ss_pred CCcccCC--cHHHHHHHHHH-HHHhHhhHHhhhhhHHHHHhCCCchHHHHHHHH
Confidence 4555553 34445544443 445688999999999999998 7776666544
No 189
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=93 Score=27.16 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCCC---CCCChhhHHHH
Q 042077 59 YMQAQALFLGRHYRRPFHLLNASKI---VPRDLRFRYLA 94 (109)
Q Consensus 59 ~lLAq~~y~~gqy~RA~~LL~~~~L---~~~~~~crYLa 94 (109)
-||=.+|..++.|.+|-.++++... ...+..|||++
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~y 251 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLY 251 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHH
Confidence 4555678889999999999987431 23458999997
No 190
>PLN03218 maturation of RBCL 1; Provisional
Probab=21.23 E-value=5.6e+02 Score=24.44 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhc--CCchhHHHHHHHHhhcCChHHHHHHHhc---CCCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALT--NDPTGVYMQAQALFLGRHYRRPFHLLNA---SKIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als--~~~~dv~lLAq~~y~~gqy~RA~~LL~~---~~L~~~~~~crYLaA~c~ 98 (109)
.-.+|.-+...+.++.|+-+-+++.... +|......|-.++...|++..|..++.. .++......|..|...|.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4467788889999999999999877654 3444555666899999999999988764 454444445666655443
No 191
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=1e+02 Score=27.16 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=11.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 57 GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 57 dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-+|.-++.+|-.+.|.||+.+..+
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHH
Confidence 334444445555555555554433
No 192
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=20.76 E-value=1.4e+02 Score=24.60 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=22.3
Q ss_pred HHHHHHhhcCChHHHHHHHhcCCCCCC
Q 042077 60 MQAQALFLGRHYRRPFHLLNASKIVPR 86 (109)
Q Consensus 60 lLAq~~y~~gqy~RA~~LL~~~~L~~~ 86 (109)
--|-|.|..|+|+.-+++|.++..-..
T Consensus 104 ArA~vafH~gnf~eLY~iLE~h~Fs~~ 130 (304)
T KOG0775|consen 104 ARAVVAFHSGNFRELYHILENHKFSPH 130 (304)
T ss_pred HHHHHHHhcccHHHHHHHHHhccCChh
Confidence 456689999999999999999875443
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=20.58 E-value=1.2e+02 Score=26.90 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc------hhHHHH--HHHHhhcCChHHHHHH---HhcCCCCCCChhhHH
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DP------TGVYMQ--AQALFLGRHYRRPFHL---LNASKIVPRDLRFRY 92 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~------~dv~lL--Aq~~y~~gqy~RA~~L---L~~~~L~~~~~~crY 92 (109)
.+..=.++|..|... =+|+=+.-++..| .| +=+-.| |+=+|..|+|+.|+-. |.+ +..|+.-+=
T Consensus 424 vKq~Y~qaLs~~~~~-rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~R 499 (549)
T PF07079_consen 424 VKQAYKQALSMHAIP-RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYR 499 (549)
T ss_pred HHHHHHHHHhhhhHH-HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHH
Confidence 344456677777664 4666676666665 22 222233 4568999999998642 233 355898888
Q ss_pred HHhhcch
Q 042077 93 LAEQKNF 99 (109)
Q Consensus 93 LaA~c~~ 99 (109)
|.|-|++
T Consensus 500 LlGl~l~ 506 (549)
T PF07079_consen 500 LLGLCLM 506 (549)
T ss_pred HHHHHHH
Confidence 8888874
No 194
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=20.37 E-value=4e+02 Score=21.60 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+|.-+..-|+.++.+.||=.+.--+-.-+ +..-.+.|-|-|...|+|.||.+-|+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 34445556677888888877776665555 556788999999999999999987763
No 195
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=20.08 E-value=4.1e+02 Score=22.82 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc---CCCCCC
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA---SKIVPR 86 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~---~~L~~~ 86 (109)
.=...+--++++.|..|.==-|.+..+++ .|+-+-+..++|+..|.|.....++.+ .++...
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 33445566789999999999999999998 556666666899999999999988753 454443
Done!