Query 042077
Match_columns 109
No_of_seqs 103 out of 163
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ffl_A Anaphase-promoting comp 99.2 8.7E-12 3E-16 92.1 5.5 83 25-107 23-146 (167)
2 2xpi_A Anaphase-promoting comp 97.8 0.00013 4.5E-09 57.1 9.3 87 21-107 83-174 (597)
3 2xcb_A PCRH, regulatory protei 97.5 0.00076 2.6E-08 44.3 8.4 78 21-98 17-96 (142)
4 3upv_A Heat shock protein STI1 97.5 0.00092 3.2E-08 42.4 8.4 77 22-98 4-82 (126)
5 1elw_A TPR1-domain of HOP; HOP 97.4 0.0009 3.1E-08 40.4 7.2 76 23-98 5-82 (118)
6 4gco_A Protein STI-1; structur 97.3 0.0015 5.3E-08 42.8 8.5 86 20-105 11-103 (126)
7 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0015 5E-08 43.5 8.4 78 21-98 10-89 (164)
8 2vyi_A SGTA protein; chaperone 97.3 0.0023 8E-08 39.1 8.5 78 21-98 11-90 (131)
9 1a17_A Serine/threonine protei 97.3 0.0022 7.5E-08 41.4 8.8 78 21-98 12-91 (166)
10 2lni_A Stress-induced-phosphop 97.3 0.0012 4.1E-08 41.0 7.1 78 21-98 15-94 (133)
11 3q49_B STIP1 homology and U bo 97.3 0.002 6.7E-08 40.8 8.0 76 23-98 10-87 (137)
12 2xev_A YBGF; tetratricopeptide 97.2 0.0021 7.1E-08 40.3 7.8 71 28-98 8-86 (129)
13 2vgx_A Chaperone SYCD; alterna 97.2 0.0026 9E-08 42.7 8.5 79 20-98 19-99 (148)
14 2l6j_A TPR repeat-containing p 97.2 0.0038 1.3E-07 37.9 8.5 76 23-98 5-88 (111)
15 3gyz_A Chaperone protein IPGC; 97.2 0.0024 8.3E-08 44.0 8.2 79 20-98 34-114 (151)
16 2dba_A Smooth muscle cell asso 97.1 0.0032 1.1E-07 39.8 7.7 77 22-98 28-109 (148)
17 1hxi_A PEX5, peroxisome target 97.0 0.0031 1E-07 41.0 7.5 71 28-98 23-95 (121)
18 1elr_A TPR2A-domain of HOP; HO 96.9 0.0035 1.2E-07 38.4 6.7 58 23-80 5-63 (131)
19 1na3_A Designed protein CTPR2; 96.9 0.0081 2.8E-07 35.2 7.8 76 23-98 10-87 (91)
20 3urz_A Uncharacterized protein 96.9 0.0023 7.9E-08 44.8 6.1 68 32-99 64-133 (208)
21 2fbn_A 70 kDa peptidylprolyl i 96.9 0.0081 2.8E-07 41.0 8.7 78 21-98 37-132 (198)
22 2kck_A TPR repeat; tetratricop 96.7 0.0051 1.7E-07 36.7 6.1 71 28-98 12-86 (112)
23 3k9i_A BH0479 protein; putativ 96.7 0.01 3.5E-07 37.5 7.7 84 22-105 27-113 (117)
24 2gw1_A Mitochondrial precursor 96.7 0.0078 2.7E-07 45.5 8.2 85 21-105 5-95 (514)
25 1na0_A Designed protein CTPR3; 96.7 0.017 5.7E-07 34.8 8.2 75 24-98 11-87 (125)
26 4ga2_A E3 SUMO-protein ligase 96.7 0.0039 1.3E-07 41.7 5.7 71 28-98 37-109 (150)
27 3ma5_A Tetratricopeptide repea 96.6 0.0059 2E-07 38.1 6.1 54 27-80 12-66 (100)
28 2vyi_A SGTA protein; chaperone 96.6 0.011 3.6E-07 36.0 6.8 74 26-99 50-125 (131)
29 4gco_A Protein STI-1; structur 96.5 0.0054 1.9E-07 40.1 5.7 70 28-97 53-124 (126)
30 3rkv_A Putative peptidylprolyl 96.5 0.016 5.4E-07 38.3 8.1 58 23-80 64-122 (162)
31 3ieg_A DNAJ homolog subfamily 96.5 0.012 4E-07 42.0 7.8 76 23-98 4-81 (359)
32 2kc7_A BFR218_protein; tetratr 96.5 0.0091 3.1E-07 36.1 6.3 52 29-80 7-60 (99)
33 3rkv_A Putative peptidylprolyl 96.5 0.0077 2.6E-07 39.9 6.4 85 21-105 10-119 (162)
34 1elw_A TPR1-domain of HOP; HOP 96.5 0.029 9.9E-07 33.5 8.5 71 25-95 41-113 (118)
35 1xnf_A Lipoprotein NLPI; TPR, 96.5 0.018 6.2E-07 39.9 8.5 77 22-98 43-121 (275)
36 2lni_A Stress-induced-phosphop 96.5 0.007 2.4E-07 37.3 5.7 75 25-99 53-129 (133)
37 2fo7_A Synthetic consensus TPR 96.5 0.023 7.9E-07 34.3 8.0 73 26-98 39-113 (136)
38 4i17_A Hypothetical protein; T 96.4 0.015 5.1E-07 40.1 7.7 74 25-98 10-86 (228)
39 2c2l_A CHIP, carboxy terminus 96.4 0.026 8.9E-07 41.5 9.2 76 23-98 5-82 (281)
40 3k9i_A BH0479 protein; putativ 96.4 0.0019 6.6E-08 40.9 2.7 72 34-105 2-83 (117)
41 3sz7_A HSC70 cochaperone (SGT) 96.4 0.012 4.1E-07 39.0 6.7 56 25-80 48-104 (164)
42 3as5_A MAMA; tetratricopeptide 96.3 0.022 7.5E-07 36.6 7.7 51 29-79 49-100 (186)
43 2fo7_A Synthetic consensus TPR 96.3 0.025 8.6E-07 34.1 7.5 80 26-105 5-91 (136)
44 2xcb_A PCRH, regulatory protei 96.3 0.011 3.7E-07 38.6 6.1 68 29-96 59-128 (142)
45 3vtx_A MAMA; tetratricopeptide 96.3 0.026 9E-07 37.4 8.0 71 28-98 79-151 (184)
46 2xev_A YBGF; tetratricopeptide 96.3 0.02 6.9E-07 35.6 7.0 54 27-80 44-101 (129)
47 3as5_A MAMA; tetratricopeptide 96.2 0.026 8.7E-07 36.3 7.5 73 26-98 80-154 (186)
48 3upv_A Heat shock protein STI1 96.2 0.023 7.8E-07 35.7 7.0 55 26-80 42-97 (126)
49 3kae_A CDC27, possible protein 96.2 0.016 5.5E-07 44.1 7.1 78 24-107 4-86 (242)
50 1na0_A Designed protein CTPR3; 96.2 0.034 1.2E-06 33.4 7.4 74 25-98 46-121 (125)
51 2e2e_A Formate-dependent nitri 96.1 0.024 8.3E-07 37.6 7.2 75 24-98 46-125 (177)
52 3fp2_A TPR repeat-containing p 96.1 0.019 6.5E-07 43.9 7.4 85 21-105 24-115 (537)
53 2ho1_A Type 4 fimbrial biogene 96.1 0.044 1.5E-06 37.7 8.5 77 22-98 37-115 (252)
54 3hym_B Cell division cycle pro 96.1 0.049 1.7E-06 38.4 8.9 68 30-97 64-134 (330)
55 2dba_A Smooth muscle cell asso 96.0 0.044 1.5E-06 34.3 7.7 56 25-80 68-124 (148)
56 3uq3_A Heat shock protein STI1 96.0 0.053 1.8E-06 36.8 8.5 76 23-98 140-217 (258)
57 1hh8_A P67PHOX, NCF-2, neutrop 96.0 0.027 9.2E-07 38.0 6.9 72 25-98 9-81 (213)
58 3q49_B STIP1 homology and U bo 96.0 0.034 1.2E-06 34.8 7.0 56 25-80 46-102 (137)
59 2kat_A Uncharacterized protein 95.9 0.032 1.1E-06 34.7 6.6 56 25-80 22-78 (115)
60 3urz_A Uncharacterized protein 95.9 0.018 6.2E-07 40.1 5.9 49 25-73 91-140 (208)
61 1ihg_A Cyclophilin 40; ppiase 95.8 0.036 1.2E-06 43.0 8.0 78 21-98 222-317 (370)
62 2yhc_A BAMD, UPF0169 lipoprote 95.8 0.035 1.2E-06 38.9 7.3 76 25-100 7-90 (225)
63 2q7f_A YRRB protein; TPR, prot 95.8 0.053 1.8E-06 36.7 7.8 48 32-79 101-149 (243)
64 2fbn_A 70 kDa peptidylprolyl i 95.8 0.035 1.2E-06 37.8 6.9 74 25-98 91-166 (198)
65 2v5f_A Prolyl 4-hydroxylase su 95.8 0.019 6.3E-07 36.6 5.1 56 26-81 9-72 (104)
66 3ieg_A DNAJ homolog subfamily 95.8 0.091 3.1E-06 37.3 9.2 70 29-98 127-198 (359)
67 2vgx_A Chaperone SYCD; alterna 95.7 0.027 9.3E-07 37.6 6.1 67 30-96 63-131 (148)
68 2ho1_A Type 4 fimbrial biogene 95.7 0.087 3E-06 36.2 8.7 70 28-97 147-218 (252)
69 2q7f_A YRRB protein; TPR, prot 95.7 0.069 2.4E-06 36.2 8.1 74 25-98 60-135 (243)
70 2pl2_A Hypothetical conserved 95.7 0.044 1.5E-06 38.3 7.2 75 26-100 9-85 (217)
71 1hh8_A P67PHOX, NCF-2, neutrop 95.6 0.064 2.2E-06 36.1 7.8 56 25-80 40-96 (213)
72 2y4t_A DNAJ homolog subfamily 95.6 0.063 2.2E-06 40.1 8.4 86 20-105 24-116 (450)
73 1fch_A Peroxisomal targeting s 95.6 0.047 1.6E-06 39.5 7.4 72 27-98 69-142 (368)
74 3mkr_A Coatomer subunit epsilo 95.6 0.091 3.1E-06 38.9 9.1 82 21-106 64-153 (291)
75 4eqf_A PEX5-related protein; a 95.6 0.049 1.7E-06 39.8 7.5 74 25-98 68-143 (365)
76 2vq2_A PILW, putative fimbrial 95.6 0.064 2.2E-06 35.6 7.5 51 29-79 15-66 (225)
77 4gcn_A Protein STI-1; structur 95.5 0.087 3E-06 34.0 7.9 57 24-80 10-67 (127)
78 3hym_B Cell division cycle pro 95.5 0.089 3E-06 37.1 8.4 74 25-98 239-314 (330)
79 1p5q_A FKBP52, FK506-binding p 95.5 0.08 2.7E-06 40.0 8.7 77 22-98 147-240 (336)
80 3vtx_A MAMA; tetratricopeptide 95.5 0.075 2.6E-06 35.1 7.5 56 25-80 110-166 (184)
81 1a17_A Serine/threonine protei 95.5 0.066 2.2E-06 34.2 7.0 55 26-80 51-106 (166)
82 3qky_A Outer membrane assembly 95.4 0.069 2.3E-06 37.7 7.6 79 22-100 15-101 (261)
83 2pl2_A Hypothetical conserved 95.4 0.045 1.6E-06 38.3 6.5 49 32-80 49-109 (217)
84 3uq3_A Heat shock protein STI1 95.4 0.11 3.7E-06 35.2 8.2 60 21-80 4-63 (258)
85 1p5q_A FKBP52, FK506-binding p 95.3 0.09 3.1E-06 39.7 8.4 77 23-99 197-275 (336)
86 2kck_A TPR repeat; tetratricop 95.3 0.09 3.1E-06 31.0 6.8 54 27-80 45-102 (112)
87 3cv0_A Peroxisome targeting si 95.3 0.079 2.7E-06 37.3 7.5 74 25-98 175-250 (327)
88 3u4t_A TPR repeat-containing p 95.3 0.16 5.3E-06 35.2 8.9 68 28-95 80-149 (272)
89 3gyz_A Chaperone protein IPGC; 95.3 0.048 1.6E-06 37.3 6.1 51 30-80 78-129 (151)
90 3u4t_A TPR repeat-containing p 95.2 0.086 3E-06 36.5 7.5 50 31-80 46-99 (272)
91 1ihg_A Cyclophilin 40; ppiase 95.2 0.11 3.7E-06 40.3 8.8 74 25-98 276-351 (370)
92 1elr_A TPR2A-domain of HOP; HO 95.2 0.065 2.2E-06 32.5 6.1 56 25-80 41-104 (131)
93 1fch_A Peroxisomal targeting s 95.2 0.082 2.8E-06 38.2 7.5 74 25-98 220-295 (368)
94 3cv0_A Peroxisome targeting si 95.1 0.1 3.4E-06 36.7 7.5 72 27-98 26-99 (327)
95 4ga2_A E3 SUMO-protein ligase 95.0 0.0096 3.3E-07 39.7 1.8 64 35-98 10-75 (150)
96 2vsy_A XCC0866; transferase, g 95.0 0.08 2.7E-06 42.1 7.4 74 25-98 26-101 (568)
97 1kt0_A FKBP51, 51 kDa FK506-bi 94.9 0.13 4.5E-06 40.6 8.4 78 21-98 267-361 (457)
98 3fp2_A TPR repeat-containing p 94.8 0.13 4.3E-06 39.2 7.8 74 25-98 313-388 (537)
99 1hxi_A PEX5, peroxisome target 94.6 0.044 1.5E-06 35.3 4.3 50 31-80 60-110 (121)
100 2kat_A Uncharacterized protein 94.6 0.07 2.4E-06 33.1 5.0 59 40-98 3-63 (115)
101 2if4_A ATFKBP42; FKBP-like, al 94.5 0.072 2.5E-06 40.4 5.9 29 24-52 181-209 (338)
102 1wao_1 Serine/threonine protei 94.5 0.058 2E-06 43.2 5.5 73 25-97 43-117 (477)
103 2e2e_A Formate-dependent nitri 94.4 0.1 3.4E-06 34.5 5.9 49 32-80 89-140 (177)
104 4eqf_A PEX5-related protein; a 94.4 0.16 5.5E-06 37.0 7.3 73 26-98 217-291 (365)
105 1kt0_A FKBP51, 51 kDa FK506-bi 94.4 0.25 8.4E-06 39.0 8.9 74 25-98 320-395 (457)
106 2if4_A ATFKBP42; FKBP-like, al 94.3 0.091 3.1E-06 39.8 5.9 69 29-97 237-307 (338)
107 1xnf_A Lipoprotein NLPI; TPR, 94.2 0.27 9.2E-06 33.8 7.8 56 25-80 80-136 (275)
108 2vq2_A PILW, putative fimbrial 94.2 0.24 8.3E-06 32.7 7.3 48 32-79 123-171 (225)
109 4i17_A Hypothetical protein; T 94.1 0.36 1.2E-05 33.0 8.4 49 32-80 86-142 (228)
110 2xpi_A Anaphase-promoting comp 94.0 0.22 7.4E-06 38.7 7.8 77 23-99 517-595 (597)
111 2y4t_A DNAJ homolog subfamily 93.9 0.32 1.1E-05 36.2 8.3 71 28-98 263-339 (450)
112 3bee_A Putative YFRE protein; 93.9 0.13 4.5E-06 32.7 5.3 45 36-80 23-68 (93)
113 2r5s_A Uncharacterized protein 93.7 0.065 2.2E-06 35.9 3.8 57 25-81 9-66 (176)
114 1w3b_A UDP-N-acetylglucosamine 93.7 0.44 1.5E-05 35.1 8.5 53 28-80 277-330 (388)
115 2vsy_A XCC0866; transferase, g 93.2 0.28 9.7E-06 38.9 7.3 74 25-98 60-135 (568)
116 1w3b_A UDP-N-acetylglucosamine 93.1 0.34 1.2E-05 35.7 7.2 50 31-80 42-92 (388)
117 2gw1_A Mitochondrial precursor 93.0 0.32 1.1E-05 36.6 7.0 56 25-80 42-98 (514)
118 3qky_A Outer membrane assembly 93.0 0.2 6.7E-06 35.3 5.5 53 28-80 58-122 (261)
119 3qou_A Protein YBBN; thioredox 93.0 0.43 1.5E-05 34.9 7.6 59 23-81 118-177 (287)
120 3mkr_A Coatomer subunit epsilo 92.9 0.099 3.4E-06 38.7 4.0 52 29-80 6-59 (291)
121 2c2l_A CHIP, carboxy terminus 92.9 0.18 6.2E-06 36.9 5.4 54 27-80 43-97 (281)
122 3ro2_A PINS homolog, G-protein 92.3 0.83 2.8E-05 31.6 8.0 58 23-80 6-68 (338)
123 3ro3_A PINS homolog, G-protein 92.2 0.58 2E-05 28.8 6.4 57 24-80 51-114 (164)
124 3ro3_A PINS homolog, G-protein 92.1 0.63 2.1E-05 28.6 6.5 58 23-80 10-74 (164)
125 4abn_A Tetratricopeptide repea 92.1 0.38 1.3E-05 37.9 6.6 56 25-80 105-162 (474)
126 3edt_B KLC 2, kinesin light ch 92.0 0.44 1.5E-05 32.4 6.1 59 22-80 127-194 (283)
127 1wao_1 Serine/threonine protei 92.0 0.45 1.5E-05 37.9 7.0 68 31-98 15-84 (477)
128 4gns_B Protein CSD3, chitin bi 91.9 0.68 2.3E-05 40.4 8.6 61 22-82 337-398 (754)
129 3ma5_A Tetratricopeptide repea 91.7 0.19 6.6E-06 30.9 3.7 45 54-98 6-51 (100)
130 2yhc_A BAMD, UPF0169 lipoprote 91.5 1.3 4.6E-05 30.5 8.3 52 29-80 154-209 (225)
131 4gyw_A UDP-N-acetylglucosamine 91.4 0.81 2.8E-05 39.1 8.4 51 30-80 17-68 (723)
132 3nf1_A KLC 1, kinesin light ch 91.3 0.89 3E-05 31.5 7.2 61 20-80 25-94 (311)
133 4a1s_A PINS, partner of inscut 91.0 1 3.5E-05 33.0 7.7 60 21-80 47-111 (411)
134 2pzi_A Probable serine/threoni 91.0 0.49 1.7E-05 39.3 6.4 70 29-98 440-511 (681)
135 3nf1_A KLC 1, kinesin light ch 90.8 0.67 2.3E-05 32.1 6.1 56 25-80 156-220 (311)
136 3edt_B KLC 2, kinesin light ch 89.9 1 3.6E-05 30.5 6.4 59 22-80 43-110 (283)
137 3u3w_A Transcriptional activat 89.0 1.5 5.2E-05 31.5 7.0 50 31-80 124-180 (293)
138 4gyw_A UDP-N-acetylglucosamine 89.0 0.8 2.7E-05 39.1 6.3 46 34-79 55-101 (723)
139 3u3w_A Transcriptional activat 88.4 3.3 0.00011 29.6 8.5 61 20-80 73-140 (293)
140 2h6f_A Protein farnesyltransfe 88.4 0.56 1.9E-05 36.7 4.6 48 33-80 108-157 (382)
141 4gcn_A Protein STI-1; structur 88.4 1 3.4E-05 28.8 5.2 56 25-80 45-108 (127)
142 4abn_A Tetratricopeptide repea 88.3 1.1 3.7E-05 35.3 6.3 60 39-98 85-147 (474)
143 3ro2_A PINS homolog, G-protein 88.2 1.6 5.4E-05 30.1 6.4 59 22-80 43-108 (338)
144 2h6f_A Protein farnesyltransfe 88.2 2.3 7.9E-05 33.1 8.1 74 32-105 141-222 (382)
145 2qfc_A PLCR protein; TPR, HTH, 88.0 4.4 0.00015 28.9 9.0 61 20-80 73-140 (293)
146 3gw4_A Uncharacterized protein 87.9 1.2 4.1E-05 29.1 5.4 56 25-80 110-172 (203)
147 3sf4_A G-protein-signaling mod 87.9 2.8 9.5E-05 30.2 7.8 57 24-80 11-72 (406)
148 3rjv_A Putative SEL1 repeat pr 87.5 0.73 2.5E-05 32.0 4.4 68 28-98 24-95 (212)
149 1ouv_A Conserved hypothetical 87.5 2.4 8.2E-05 29.6 7.1 50 30-80 14-67 (273)
150 1qqe_A Vesicular transport pro 86.8 3.3 0.00011 29.9 7.7 57 25-81 161-225 (292)
151 2pzi_A Probable serine/threoni 86.6 1.7 5.8E-05 36.0 6.7 64 34-98 513-578 (681)
152 3qwp_A SET and MYND domain-con 85.7 2.8 9.7E-05 33.3 7.4 60 21-80 328-396 (429)
153 3sf4_A G-protein-signaling mod 85.5 3.4 0.00012 29.7 7.2 56 25-80 190-252 (406)
154 2l6j_A TPR repeat-containing p 85.3 0.2 6.7E-06 29.9 0.3 53 27-79 43-102 (111)
155 2qfc_A PLCR protein; TPR, HTH, 85.3 1.6 5.6E-05 31.3 5.4 56 25-80 199-262 (293)
156 2ff4_A Probable regulatory pro 85.1 4.7 0.00016 31.5 8.4 59 22-80 171-230 (388)
157 4a1s_A PINS, partner of inscut 84.7 3 0.0001 30.4 6.7 56 25-80 226-288 (411)
158 3gw4_A Uncharacterized protein 84.5 2.1 7.3E-05 27.9 5.3 58 23-80 27-91 (203)
159 1na3_A Designed protein CTPR2; 84.0 3.2 0.00011 23.5 5.4 44 26-69 47-91 (91)
160 1klx_A Cysteine rich protein B 83.8 2.8 9.4E-05 27.4 5.6 44 36-80 39-86 (138)
161 3qww_A SET and MYND domain-con 83.8 4.1 0.00014 32.6 7.6 59 22-80 340-407 (433)
162 3q15_A PSP28, response regulat 83.7 3.7 0.00012 30.4 6.8 53 28-80 228-286 (378)
163 3ulq_A Response regulator aspa 83.2 3.4 0.00012 30.5 6.5 49 32-80 234-289 (383)
164 3n71_A Histone lysine methyltr 82.3 4.9 0.00017 32.7 7.6 60 21-80 350-418 (490)
165 1ouv_A Conserved hypothetical 82.2 5.1 0.00017 27.8 6.8 45 35-80 55-103 (273)
166 3ulq_A Response regulator aspa 81.6 4.9 0.00017 29.6 6.8 56 25-80 187-249 (383)
167 2r5s_A Uncharacterized protein 78.3 10 0.00035 24.8 7.0 45 36-80 88-133 (176)
168 2hr2_A Hypothetical protein; a 77.8 4.1 0.00014 28.8 5.1 48 33-80 68-127 (159)
169 2kc7_A BFR218_protein; tetratr 77.1 2.2 7.6E-05 25.0 3.1 41 58-98 3-45 (99)
170 3rjv_A Putative SEL1 repeat pr 76.7 15 0.00052 25.0 8.0 46 35-80 102-154 (212)
171 3mv2_B Coatomer subunit epsilo 76.3 2.7 9.1E-05 32.8 4.0 55 44-98 88-146 (310)
172 1qqe_A Vesicular transport pro 76.2 8.5 0.00029 27.6 6.6 62 19-80 34-102 (292)
173 3bee_A Putative YFRE protein; 76.2 2.1 7.1E-05 26.9 2.9 46 53-98 4-53 (93)
174 3ly7_A Transcriptional activat 76.2 8.3 0.00028 30.9 7.0 51 31-81 286-336 (372)
175 1pc2_A Mitochondria fission pr 75.9 2.8 9.4E-05 29.7 3.7 44 37-80 50-96 (152)
176 2v5f_A Prolyl 4-hydroxylase su 75.3 2.5 8.7E-05 26.3 3.1 46 54-99 4-57 (104)
177 1klx_A Cysteine rich protein B 74.2 5 0.00017 26.1 4.5 46 35-81 74-123 (138)
178 2xm6_A Protein corresponding t 73.0 12 0.0004 28.8 7.0 69 28-98 45-121 (490)
179 1hz4_A MALT regulatory protein 73.0 7.8 0.00027 28.1 5.7 50 31-80 23-78 (373)
180 3qou_A Protein YBBN; thioredox 71.8 7.2 0.00025 28.2 5.2 47 34-80 197-244 (287)
181 4b4t_Q 26S proteasome regulato 70.8 11 0.00039 27.6 6.2 56 21-80 7-80 (434)
182 1hz4_A MALT regulatory protein 70.1 9 0.00031 27.8 5.4 54 27-80 58-118 (373)
183 3q15_A PSP28, response regulat 69.6 20 0.00069 26.3 7.4 50 30-79 149-206 (378)
184 2ifu_A Gamma-SNAP; membrane fu 69.5 20 0.00069 25.8 7.2 57 25-81 158-221 (307)
185 1nzn_A CGI-135 protein, fissio 68.6 4.4 0.00015 27.9 3.3 40 41-80 57-99 (126)
186 4b4t_Q 26S proteasome regulato 68.1 17 0.00059 26.6 6.7 55 26-80 139-200 (434)
187 2hr2_A Hypothetical protein; a 64.9 33 0.0011 24.0 7.6 60 21-80 10-82 (159)
188 4g1t_A Interferon-induced prot 64.5 10 0.00036 28.2 4.9 44 37-80 315-359 (472)
189 3mv2_B Coatomer subunit epsilo 64.4 9.9 0.00034 29.5 4.9 50 31-80 109-161 (310)
190 3o48_A Mitochondria fission 1 63.4 6.9 0.00024 27.4 3.5 41 40-80 61-103 (134)
191 1y8m_A FIS1; mitochondria, unk 62.9 10 0.00035 26.8 4.3 40 41-80 61-102 (144)
192 3qwp_A SET and MYND domain-con 60.7 36 0.0012 26.8 7.7 55 26-80 291-354 (429)
193 2xm6_A Protein corresponding t 60.7 14 0.00048 28.3 5.2 45 35-80 236-284 (490)
194 4g1t_A Interferon-induced prot 60.4 17 0.00058 27.0 5.4 63 35-97 226-290 (472)
195 2ifu_A Gamma-SNAP; membrane fu 58.1 23 0.00078 25.5 5.7 45 36-80 129-180 (307)
196 3mv2_A Coatomer subunit alpha; 57.4 12 0.00042 29.7 4.3 36 21-56 206-241 (325)
197 3e4b_A ALGK; tetratricopeptide 57.0 25 0.00087 27.1 6.1 44 35-80 264-312 (452)
198 3qww_A SET and MYND domain-con 54.9 50 0.0017 26.2 7.6 47 34-80 310-365 (433)
199 4gq2_M Nucleoporin NUP120; bet 54.3 25 0.00087 30.8 6.2 50 28-81 816-866 (950)
200 3e4b_A ALGK; tetratricopeptide 53.1 19 0.00065 27.9 4.8 60 36-98 231-293 (452)
201 1pc2_A Mitochondria fission pr 52.7 26 0.0009 24.5 5.1 53 54-106 31-94 (152)
202 3mkr_B Coatomer subunit alpha; 52.3 14 0.00048 29.3 3.9 35 22-56 198-232 (320)
203 1zu2_A Mitochondrial import re 49.8 13 0.00043 26.2 3.0 34 38-71 18-52 (158)
204 2ond_A Cleavage stimulation fa 48.1 45 0.0016 23.7 5.9 48 33-80 110-159 (308)
205 1zu2_A Mitochondrial import re 47.8 17 0.00059 25.5 3.5 44 38-81 62-117 (158)
206 3n71_A Histone lysine methyltr 46.5 82 0.0028 25.4 7.7 50 31-80 318-376 (490)
207 1e52_A Excinuclease ABC subuni 46.3 45 0.0015 20.2 4.8 34 19-52 23-56 (63)
208 2ond_A Cleavage stimulation fa 45.9 35 0.0012 24.4 4.9 47 35-81 182-229 (308)
209 4fhn_B Nucleoporin NUP120; pro 45.0 45 0.0015 29.6 6.4 51 27-81 817-868 (1139)
210 3ffl_A Anaphase-promoting comp 41.6 38 0.0013 24.3 4.5 41 56-96 123-163 (167)
211 1nzn_A CGI-135 protein, fissio 39.9 85 0.0029 21.2 6.9 53 53-107 33-98 (126)
212 2ooe_A Cleavage stimulation fa 35.7 1.4E+02 0.0047 23.0 7.2 49 33-81 23-72 (530)
213 4f3v_A ESX-1 secretion system 34.0 54 0.0018 24.9 4.5 49 32-80 145-196 (282)
214 4ds1_A Dynein light chain 1, c 31.3 43 0.0015 21.6 3.1 38 2-39 6-43 (97)
215 2p58_C Putative type III secre 29.4 1.4E+02 0.0046 20.4 6.9 54 26-80 11-65 (116)
216 2uwj_G Type III export protein 29.2 1.4E+02 0.0047 20.3 6.9 49 31-80 15-64 (115)
217 2cfu_A SDSA1; SDS-hydrolase, l 27.1 1E+02 0.0034 25.9 5.4 59 45-105 439-500 (658)
218 2rmf_A Urocortin, HUCN1; CRF l 26.7 46 0.0016 18.7 2.2 16 4-19 1-16 (40)
219 1b89_A Protein (clathrin heavy 25.2 66 0.0023 26.3 3.9 52 24-82 124-175 (449)
220 1qsa_A Protein (soluble lytic 25.0 1E+02 0.0035 25.9 5.1 50 31-80 294-344 (618)
221 2pm7_A Protein WEB1, protein t 24.1 1.3E+02 0.0044 24.0 5.3 54 25-83 159-217 (399)
222 1ixm_A SPO0B, protein (sporula 23.4 1.9E+02 0.0064 20.4 5.6 17 19-35 19-35 (192)
223 2ooe_A Cleavage stimulation fa 23.2 1.6E+02 0.0053 22.6 5.5 46 35-80 404-450 (530)
224 1go9_A Corticotropin releasing 21.4 20 0.00067 20.5 -0.0 17 3-19 1-17 (42)
225 1b89_A Protein (clathrin heavy 20.8 1.4E+02 0.0049 24.3 5.0 62 25-89 180-242 (449)
226 2p58_C Putative type III secre 20.4 90 0.0031 21.3 3.2 46 31-80 49-94 (116)
No 1
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.23 E-value=8.7e-12 Score=92.09 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCCch----------hHHHHHHHHhhcCChHHHHHHHhc----CCCCCCCh--
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPT----------GVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDL-- 88 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~----------dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~-- 88 (109)
|+.+|++.+++++|++|++.|++++++++++. -.+++|+++|..|+|.||....++ .+.+.+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 78899999999999999999999999997444 459999999999999999998876 33222221
Q ss_pred --------------------hhHHHHhhcc-----hhHHHhhhh
Q 042077 89 --------------------RFRYLAEQKN-----FNEKYLEIE 107 (109)
Q Consensus 89 --------------------~crYLaA~c~-----~~~al~~~~ 107 (109)
-+||..|.|+ +++|+.+.|
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 5999999997 678888765
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.79 E-value=0.00013 Score=57.07 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc--
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN-- 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~-- 98 (109)
.+..++.++..++.++.|+.|+-+.++++...+++.+.+.++.+++..|++.+|..++++......++...+..+.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 467789999999999999999999999998888888999999999999999999999998644567788888877765
Q ss_pred ---hhHHHhhhh
Q 042077 99 ---FNEKYLEIE 107 (109)
Q Consensus 99 ---~~~al~~~~ 107 (109)
+++|+...+
T Consensus 163 ~g~~~~A~~~~~ 174 (597)
T 2xpi_A 163 LYDWQGALNLLG 174 (597)
T ss_dssp TTCHHHHHHHHC
T ss_pred HhhHHHHHHHHh
Confidence 566766544
No 3
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.48 E-value=0.00076 Score=44.31 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+.+..+-..++.++.|+.|+=+.++++...+ ++.-.+.+|.|++..|+|..|...+++. .+.+.++...+..|.|+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345556666777889999999999999998887 6677788899999999999998877662 23345666666667665
No 4
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00092 Score=42.42 Aligned_cols=77 Identities=16% Similarity=0.064 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.+.+...-..+..++.|+.|+=+-++.+.+.+ ++.-.+.+|.|++..|+|..|...+++. .+...++...+..|.|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34566667778889999999999999999887 6677888999999999999999877653 23345666667777665
No 5
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.39 E-value=0.0009 Score=40.41 Aligned_cols=76 Identities=9% Similarity=-0.040 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+.+......+...+.|+.|+-+-++.+...+ ++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455666677778888888888888888776 5666777888888888888888777652 22234555555555554
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0015 Score=42.83 Aligned_cols=86 Identities=8% Similarity=0.004 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+..+..+..=..+..++.|+.|+-.-+|.+.+.+ ++.-.+.+|.||+..|++..|+..+++. .+...++...+..|.|
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4456667777788899999999999999999987 6777788999999999999999987763 3345667777777776
Q ss_pred c-----hhHHHhh
Q 042077 98 N-----FNEKYLE 105 (109)
Q Consensus 98 ~-----~~~al~~ 105 (109)
+ |++|...
T Consensus 91 ~~~~~~~~~A~~~ 103 (126)
T 4gco_A 91 LVAMREWSKAQRA 103 (126)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHH
Confidence 5 4555443
No 7
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.33 E-value=0.0015 Score=43.54 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+.+..+-..+..++.|+.|+-+-++++.+.+ ++.-.+.+|.||+..|+|..|+..+++. .+...++...+..|.|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566777777888999999999999888886 6667788899999999999988877653 23345566666666655
No 8
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.30 E-value=0.0023 Score=39.08 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
....+..+...+...+.|+.|+-+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 345566667777788889999998888888876 5667778888999999998888877652 22234555666666554
No 9
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.30 E-value=0.0022 Score=41.36 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+.+...-..+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 455566667777788888888888888888776 5667777888888888888888776652 22234555555555554
No 10
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.28 E-value=0.0012 Score=40.97 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
....+..+...+...+.|+.|+-+-++++...+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345677777888889999999999999998886 6678888999999999999999887652 22344566666666654
No 11
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.26 E-value=0.002 Score=40.80 Aligned_cols=76 Identities=7% Similarity=-0.004 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+.+...-..+...+.|+.|+-+-++++.+.+ ++.-.+.+|.|++..|+|..|...+++. .+...++...+..|.|+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4456667778889999999999999999987 5677888999999999999999877653 23345677777777765
No 12
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.22 E-value=0.0021 Score=40.26 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=47.4
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-Cc---hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCC---hhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DP---TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRD---LRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~---~~crYLaA~c~ 98 (109)
.-..++..+.|+.|+-.-++++...+ ++ +..+.+|.+++..|+|..|...+++. ...+.+ +...+..|.|+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34455667888888888888887776 44 46777888888888888887766542 112333 45566666665
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.19 E-value=0.0026 Score=42.70 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+..+.+..+-..+..++.|+.|+=.-++++.+.+ ++.-.+.+|.|++..|+|..|+..+++. .+...++...|-.|.|
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3445566667778889999999999999998887 6677788999999999999999877763 2334566666666666
Q ss_pred c
Q 042077 98 N 98 (109)
Q Consensus 98 ~ 98 (109)
+
T Consensus 99 ~ 99 (148)
T 2vgx_A 99 L 99 (148)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0038 Score=37.88 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCC------hhhHHHH
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRD------LRFRYLA 94 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~------~~crYLa 94 (109)
+.+..+-..+...+.|+.|+=+.++.+.+.+ ++.-.+.+|.|++..|+|..|...+++. .+...+ ....+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3455566777889999999999999999987 6778889999999999999999988763 333444 4455555
Q ss_pred hhcc
Q 042077 95 EQKN 98 (109)
Q Consensus 95 A~c~ 98 (109)
+.++
T Consensus 85 ~~~~ 88 (111)
T 2l6j_A 85 ELAQ 88 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 15
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.16 E-value=0.0024 Score=43.98 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+..+-+..+-..+..++.|+.|+=+-+|++.+.+ ++.-.+.||.|++..|+|..|+...++. .+.+.++...|-.|.|
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3456667777788899999999999999999997 6777888999999999999999988763 3445677777777777
Q ss_pred c
Q 042077 98 N 98 (109)
Q Consensus 98 ~ 98 (109)
+
T Consensus 114 ~ 114 (151)
T 3gyz_A 114 Q 114 (151)
T ss_dssp H
T ss_pred H
Confidence 6
No 16
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0032 Score=39.81 Aligned_cols=77 Identities=14% Similarity=0.042 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ 96 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~ 96 (109)
.+.+......+..++.|+.|+=+-++++.+.++ +.-.+.+|.+++..|+|..|...+++. .+...++...+..|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 456777788889999999999999999998875 456778999999999999999887652 223456667777776
Q ss_pred cc
Q 042077 97 KN 98 (109)
Q Consensus 97 c~ 98 (109)
|+
T Consensus 108 ~~ 109 (148)
T 2dba_A 108 AL 109 (148)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.05 E-value=0.0031 Score=40.97 Aligned_cols=71 Identities=7% Similarity=-0.053 Sum_probs=58.6
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.-..++..+.++.|+=..++++.+.+ +++-.+.+|.++...|++..|...+++. .+...++...+..|.++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44556779999999999999999997 7778899999999999999999988763 33456677777777766
No 18
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.93 E-value=0.0035 Score=38.38 Aligned_cols=58 Identities=24% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.+..+-.-+...+.|+.|+-+-++.+...+ ++.-.+.+|.+++..|+|..|...+++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4456666778889999999999999999886 566778899999999999999988775
No 19
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.88 E-value=0.0081 Score=35.16 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.-+..+-.-+...+.|+.|+-+.++.+.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3445556667889999999999999999987 6778889999999999999999988763 22234444444444443
No 20
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.87 E-value=0.0023 Score=44.76 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=36.7
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
+...+.|+.|+=+-+|.+.+.+ +++-.+.+|.+++..|++..|...+++. .+.+.++...+-.|.+++
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3455566666666666666554 4445555666666666666666555442 222344455555555544
No 21
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.86 E-value=0.0081 Score=41.04 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----------------hhHHHHHHHHhhcCChHHHHHHHhcC-C
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----------------TGVYMQAQALFLGRHYRRPFHLLNAS-K 82 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----------------~dv~lLAq~~y~~gqy~RA~~LL~~~-~ 82 (109)
..+.++..-..+..++.|+.|+=+-++.+.+.+ ++ .-.+.+|.|++..|+|..|...+++. .
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456677777788889999999999999888876 44 55677899999999999998877652 2
Q ss_pred CCCCChhhHHHHhhcc
Q 042077 83 IVPRDLRFRYLAEQKN 98 (109)
Q Consensus 83 L~~~~~~crYLaA~c~ 98 (109)
+...++...+..|.++
T Consensus 117 ~~p~~~~~~~~lg~~~ 132 (198)
T 2fbn_A 117 IDKNNVKALYKLGVAN 132 (198)
T ss_dssp HSTTCHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHH
Confidence 2345666667777665
No 22
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.73 E-value=0.0051 Score=36.73 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=51.9
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCC--ChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPR--DLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~--~~~crYLaA~c~ 98 (109)
+..-+..++.|+.|+-+.+|++.+.+ ++.-.+.+|.+++..|+|..|...+++. .+... +....+..|.|+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34445678899999999999998886 5667788999999999999999887653 22234 555555555543
No 23
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.70 E-value=0.01 Score=37.50 Aligned_cols=84 Identities=17% Similarity=0.011 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCCh-hhHHHHhhcc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDL-RFRYLAEQKN 98 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~-~crYLaA~c~ 98 (109)
..-+..+-.-+...+.|+.|+=+.+|++.+.+ ++.-.+.+|.|++..|++..|...+++. .+...++ .-.|..|...
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34455566667889999999999999999987 6788899999999999999999987752 1112222 2345555555
Q ss_pred hhHHHhh
Q 042077 99 FNEKYLE 105 (109)
Q Consensus 99 ~~~al~~ 105 (109)
|.+++++
T Consensus 107 ~~~~l~~ 113 (117)
T 3k9i_A 107 YADKLDE 113 (117)
T ss_dssp HTTCTTC
T ss_pred HHHHHHH
Confidence 6555554
No 24
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0078 Score=45.50 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN- 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~- 98 (109)
..+.+...-..++.++.|+.|+-+-++++...+++...+.+|.|++..|+|..|...+++. .+.+.++...+..|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 4566777778888899999999999999999888888888999999999999999988752 23345666667766664
Q ss_pred ----hhHHHhh
Q 042077 99 ----FNEKYLE 105 (109)
Q Consensus 99 ----~~~al~~ 105 (109)
+++|...
T Consensus 85 ~~g~~~~A~~~ 95 (514)
T 2gw1_A 85 GLGKFADAMFD 95 (514)
T ss_dssp HTTCHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 5555543
No 25
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.66 E-value=0.017 Score=34.80 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
-+..+..-+...+.|+.|+=+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344555667778888888888888887765 4556677888888888888888777652 11223444444444443
No 26
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.66 E-value=0.0039 Score=41.72 Aligned_cols=71 Identities=10% Similarity=0.063 Sum_probs=57.2
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+-.-+...+.|+.|+-+-+|++.+.+ +++-.+.+|.||+..|++..|...+++. .+.+.++...+-.|.++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34457789999999999999999997 7788899999999999999999988763 33455666666666654
No 27
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.64 E-value=0.0059 Score=38.10 Aligned_cols=54 Identities=7% Similarity=-0.001 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+-.-++..+.|+.|+-+-+|++.+.+ ++.-.+.+|.+|+..|++..|...+++
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444556779999999999999999997 677889999999999999999998876
No 28
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.55 E-value=0.011 Score=36.01 Aligned_cols=74 Identities=7% Similarity=-0.009 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
..+..-+...+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..+.++.
T Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 50 CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3445556789999999999999999987 5778899999999999999999988763 223445666666666654
No 29
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.54 E-value=0.0054 Score=40.13 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=54.9
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+-.-+...+.|+.|+-..+|++.+.+ ++...+.+|.||+..|+|..|...+++. .+.+.+...+.-.++|
T Consensus 53 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 53 RAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 34456678999999999999999987 6778889999999999999999988763 3334555555544544
No 30
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.54 E-value=0.016 Score=38.31 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+..+-.-++..+.|+.|+=++++++.+.+ ++...|.+|.+|+..|+|..|...+++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 3344455567789999999999999999987 677889999999999999999998876
No 31
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.53 E-value=0.012 Score=41.96 Aligned_cols=76 Identities=11% Similarity=-0.036 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+.+...-..++.++.|+.|+=..++++...+ ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4455666777888999999999999888886 6778888999999999999999887662 22344556666666655
No 32
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.52 E-value=0.0091 Score=36.08 Aligned_cols=52 Identities=6% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-Cch-hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPT-GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~-dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
...++..+.|+.|+-..++++.+.+ ++. -.+.+|.+++..|++..|...+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456779999999999999999987 667 788999999999999999998876
No 33
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.52 E-value=0.0077 Score=39.88 Aligned_cols=85 Identities=11% Similarity=-0.016 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhh------------------cC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAAL------------------TN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~al------------------s~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
..+.++..=..+..++.|+.|+=.-++.+.+ .+ .+.-.+-+|.||+..|+|..|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4667788888899999999999999999988 21 1234567899999999999999977663
Q ss_pred -CCCCCChhhHHHHhhcc-----hhHHHhh
Q 042077 82 -KIVPRDLRFRYLAEQKN-----FNEKYLE 105 (109)
Q Consensus 82 -~L~~~~~~crYLaA~c~-----~~~al~~ 105 (109)
.+...++...|..|.|+ |++|...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence 33456777778888776 5555543
No 34
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.50 E-value=0.029 Score=33.46 Aligned_cols=71 Identities=14% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHh
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAE 95 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA 95 (109)
+..+..-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..+
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 44445566789999999999999999987 5778899999999999999999988763 33334444444333
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.49 E-value=0.018 Score=39.86 Aligned_cols=77 Identities=10% Similarity=-0.095 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..-+..+..-+...+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 34455556667778888888888888888876 5667777888888888888888877652 22234455555555554
No 36
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.49 E-value=0.007 Score=37.34 Aligned_cols=75 Identities=9% Similarity=-0.035 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
+..+..-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...+....+..+.+++
T Consensus 53 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 33444556778999999999999999987 6778899999999999999999988763 222344555566666554
No 37
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.49 E-value=0.023 Score=34.31 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+..-+...+.++.|+-+.+++....+ ++.-.+.+|.+++..|++..|...+++. .....++...+..|.++
T Consensus 39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445556778899999999999888876 4556778999999999999999887652 11234455555556554
No 38
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.44 E-value=0.015 Score=40.12 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC--CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN--DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~--~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+...-..++.++.|+.|+=+-++++.+.+ ++...+.+|.|++..|+|..|...+++. .+.+.++...+..|.++
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 44455567788999999999999998884 5667888999999999999998877763 22344555555556554
No 39
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.39 E-value=0.026 Score=41.49 Aligned_cols=76 Identities=7% Similarity=-0.004 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+.+...-..+..++.|+.|+=..++++.+.+ ++.-.+.+|.||+..|+|..|...+++. .+...++...+..|.++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666777889999999999999999987 6677788999999999999999988763 44456666767666654
No 40
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.39 E-value=0.0019 Score=40.95 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=52.0
Q ss_pred HhCCchhHHHHHHHHHhhc---C-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHH
Q 042077 34 SKHLYSSAIFFADKIAALT---N-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKY 103 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als---~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al 103 (109)
.++.|+.|+-+-+|++.+. + ++.-.+.||.+|+..|+|..|...+++. .+.+.++...+..|.|+ +++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3578899999999999983 3 5567889999999999999999988763 23355677777778776 45555
Q ss_pred hh
Q 042077 104 LE 105 (109)
Q Consensus 104 ~~ 105 (109)
..
T Consensus 82 ~~ 83 (117)
T 3k9i_A 82 EL 83 (117)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 41
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.39 E-value=0.012 Score=38.99 Aligned_cols=56 Identities=11% Similarity=-0.069 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-++..+.|+.|+-+.+|++.+.+ ++.-.+.+|.+|+..|+|..|...+++
T Consensus 48 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33445556789999999999999999997 677889999999999999999998876
No 42
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.34 E-value=0.022 Score=36.59 Aligned_cols=51 Identities=10% Similarity=-0.043 Sum_probs=26.0
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
..-+...+.++.|+-+.++++...+ ++.-.+.+|.+++..|++..|...++
T Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 100 (186)
T 3as5_A 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3334445555555555555555544 33344445555555555555555444
No 43
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.32 E-value=0.025 Score=34.14 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN----- 98 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~----- 98 (109)
..+..-+...+.++.|+-+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 3455667788999999999999998876 5667788999999999999999988752 11234455555555543
Q ss_pred hhHHHhh
Q 042077 99 FNEKYLE 105 (109)
Q Consensus 99 ~~~al~~ 105 (109)
+++|...
T Consensus 85 ~~~A~~~ 91 (136)
T 2fo7_A 85 YDEAIEY 91 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 44
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.31 E-value=0.011 Score=38.61 Aligned_cols=68 Identities=13% Similarity=-0.012 Sum_probs=52.6
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ 96 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~ 96 (109)
-.-+...+.|+.|+-+.+|++.+.+ ++.-.+.+|.||+..|++..|...+++. .+...++....+..+
T Consensus 59 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 3446678999999999999999997 7888899999999999999999988763 222334444444443
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.28 E-value=0.026 Score=37.43 Aligned_cols=71 Identities=13% Similarity=-0.038 Sum_probs=50.2
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+-.-+...+.++.|+-..++...+.+ +++..+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 34455667788888888888888876 5667788888888888888888877652 22345555556566554
No 46
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.26 E-value=0.02 Score=35.58 Aligned_cols=54 Identities=7% Similarity=-0.037 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcC-C---chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTN-D---PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~---~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+-.-+...+.|+.|+-+-++++...+ + ++..+.+|.+++..|++..|...+++
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344456788999999999999999987 4 56689999999999999999998876
No 47
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.23 E-value=0.026 Score=36.25 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+..-+...+.++.|+-+.++++...+ ++.-.+.+|.+++..|++..|...+++. .....++...+..|.++
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 3445556778999999999999999886 6777888999999999999999988762 22234566666666654
No 48
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.023 Score=35.73 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+-.-+...+.|+.|+-..+|++.+.+ ++...+.+|.+++..|+|..|...+++
T Consensus 42 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 42 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3344456778999999999999999997 677889999999999999999998876
No 49
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.18 E-value=0.016 Score=44.09 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc-----
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN----- 98 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~----- 98 (109)
.+..-|-.+..-..|+||+|++-=+++ ..|+--.++.-++|.+|+|.||+.+|.+-+ .....|--+.|+
T Consensus 4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~--~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 4 KLIGKICKSIRYRDYETAIFLAACLLP--CKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESLCYKKKKD 77 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHcc--CChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHHHHHHHHH
Confidence 345566777888899999999976654 567999999999999999999999999865 233345555565
Q ss_pred hhHHHhhhh
Q 042077 99 FNEKYLEIE 107 (109)
Q Consensus 99 ~~~al~~~~ 107 (109)
|+.|+-.+|
T Consensus 78 YkkA~~~le 86 (242)
T 3kae_A 78 YKKAIKSLE 86 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 50
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.16 E-value=0.034 Score=33.37 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+..-+...+.|+.|+-+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++..++..+.++
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455666788999999999999999886 6677789999999999999999988762 22234555555555443
No 51
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.12 E-value=0.024 Score=37.60 Aligned_cols=75 Identities=8% Similarity=0.062 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHH-HhhcCCh--HHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQA-LFLGRHY--RRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~-~y~~gqy--~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
-+..+-.-+...+.|+.|+-+.+|++.+.+ ++.-.+.+|.+ ++..|++ ..|...+++. .+...++...+..|.++
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 344555667788899999999999988886 66777888999 7788998 8888877652 22345566666666654
No 52
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.12 E-value=0.019 Score=43.86 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+.+...-..+..++.|+.|+=+-++++...+ ++...+.+|.|++..|+|..|...+++. .+.+.++...+..|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 467788888899999999999999999999987 7778889999999999999999988763 23355677777777765
Q ss_pred -----hhHHHhh
Q 042077 99 -----FNEKYLE 105 (109)
Q Consensus 99 -----~~~al~~ 105 (109)
+++|+..
T Consensus 104 ~~~g~~~~A~~~ 115 (537)
T 3fp2_A 104 ESLGNFTDAMFD 115 (537)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 4555543
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.08 E-value=0.044 Score=37.74 Aligned_cols=77 Identities=8% Similarity=-0.152 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.+-+..+..-+...+.|+.|+=+.++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...+....+..|.++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 56666777778889999999999999988876 5667788899999999999998887652 12233445555555543
No 54
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.05 E-value=0.049 Score=38.42 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=39.1
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC-ChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR-HYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g-qy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
.-+...+.++.|+-+.++++...+ ++...+.+|.+++..| ++..|...+++. .+...++...+..|.+
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 134 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS 134 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 344556666666666666666665 5556666666777666 666666665542 2223344444444444
No 55
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.00 E-value=0.044 Score=34.31 Aligned_cols=56 Identities=20% Similarity=0.057 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+..-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus 68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 68 HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444556789999999999999999987 667788999999999999999998876
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.053 Score=36.84 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.-+..+..-+...+.|+.|+=+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3344555667788999999999999999887 6777889999999999999999988763 22244556666666654
No 57
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.96 E-value=0.027 Score=38.04 Aligned_cols=72 Identities=6% Similarity=-0.133 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+-..-..+...+.|+.|+-.-++++ .+++...+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556677888888888888874 446677788888888888888888877652 22244555555555554
No 58
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.96 E-value=0.034 Score=34.84 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 46 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444556778999999999999999987 677889999999999999999988775
No 59
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.92 E-value=0.032 Score=34.70 Aligned_cols=56 Identities=5% Similarity=-0.088 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.|+.|+-+.++++.+.+ ++...+.+|.++...|++..|...+++
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33445556789999999999999999987 567888999999999999999998876
No 60
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.89 E-value=0.018 Score=40.10 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHH
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRR 73 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~R 73 (109)
+..+-.-+...+.|+.|+=+-+|++.+.+ +++..+.+|.+|+..|+...
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence 33444556778999999999999999987 67778889999988876543
No 61
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.85 E-value=0.036 Score=43.02 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHh----------------hcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-C
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAA----------------LTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-K 82 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~a----------------ls~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~ 82 (109)
....++.+-..+..++.|+.|+-.-+|.+. +.+ ++.-.+.+|.||+..|+|..|+..+++. .
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344556666666777777777777777666 222 2345556777777777777777766552 2
Q ss_pred CCCCChhhHHHHhhcc
Q 042077 83 IVPRDLRFRYLAEQKN 98 (109)
Q Consensus 83 L~~~~~~crYLaA~c~ 98 (109)
+...++...|..|.|+
T Consensus 302 ~~p~~~~a~~~lg~~~ 317 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGW 317 (370)
T ss_dssp TCTTCHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHH
Confidence 3344555556556554
No 62
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.84 E-value=0.035 Score=38.87 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc---hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCCh---hhHHHHhh
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DP---TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDL---RFRYLAEQ 96 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~---~crYLaA~ 96 (109)
+-..-..++.++.|+.|+=.-++++...+ ++ +..+++|.+++..|+|..|+..+++- .+.+.++ ...|..|.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 34445668889999999999999999876 33 57899999999999999999987662 1122333 26677777
Q ss_pred cchh
Q 042077 97 KNFN 100 (109)
Q Consensus 97 c~~~ 100 (109)
|++.
T Consensus 87 ~~~~ 90 (225)
T 2yhc_A 87 TNMA 90 (225)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.79 E-value=0.053 Score=36.74 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
+...+.++.|+-+.+|++.+.+ ++.-.+.+|.+++..|++..|...++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3344444444444444444443 33334444444444444444444443
No 64
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.78 E-value=0.035 Score=37.77 Aligned_cols=74 Identities=18% Similarity=0.107 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+-.-++..+.|+.|+=+.++++.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+...+...+.|.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 33444556788999999999999999987 6778899999999999999999988763 23345666666666665
No 65
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.77 E-value=0.019 Score=36.63 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-------C-chhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-------D-PTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-------~-~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
-.+=..+.+++.|..|++|-++.+...+ + ++-...||.|+|..|++.+|....++.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3556778899999999999999887642 1 223458999999999999999988763
No 66
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.75 E-value=0.091 Score=37.27 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=57.0
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..-+...+.|+.|+-+-++++...+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5677889999999999999999887 6778889999999999999999988763 33455666767777665
No 67
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.75 E-value=0.027 Score=37.59 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=52.6
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ 96 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~ 96 (109)
.-+...+.|+.|+=+.+|++.+.+ ++...+.+|.||+..|++..|...+++. .+...++....+..+
T Consensus 63 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 445678999999999999999997 7888999999999999999999988763 222344555444433
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.69 E-value=0.087 Score=36.19 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=42.2
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+..-+...+.++.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .....++...+..+.+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 218 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34445566777777777777777665 4556667777777777777777766552 2223344444444443
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.68 E-value=0.069 Score=36.16 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+..-+...+.++.|+-..++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33444555667777777777777777765 4555666777777777777777766542 11233444445455443
No 70
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.67 E-value=0.044 Score=38.35 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcchh
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNFN 100 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~~ 100 (109)
..+-.-++..+.|+.|+=.-++++.+.+ +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.++..
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3445566789999999999999999987 7788999999999999999999988763 3345566666666665543
No 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.64 E-value=0.064 Score=36.13 Aligned_cols=56 Identities=5% Similarity=-0.081 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.|+.|+=+.++.+.+.+ ++...+.+|.+++..|+|..|...+++
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34455567789999999999999999986 667788899999999999999998875
No 72
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.64 E-value=0.063 Score=40.06 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+..+.+..+...+...+.|+.|+-+-++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3466677788888999999999999999998876 6778889999999999999999988762 1223445555555555
Q ss_pred c-----hhHHHhh
Q 042077 98 N-----FNEKYLE 105 (109)
Q Consensus 98 ~-----~~~al~~ 105 (109)
+ +++|...
T Consensus 104 ~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 104 LLKQGKLDEAEDD 116 (450)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 4 4555443
No 73
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.61 E-value=0.047 Score=39.49 Aligned_cols=72 Identities=4% Similarity=-0.102 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
....-+...+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345566779999999999999999886 6678888999999999999999988763 22344566666666654
No 74
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.61 E-value=0.091 Score=38.88 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc--C-CchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALT--N-DPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQK 97 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als--~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c 97 (109)
...-++.+..-+...+.++.|+=.-++++... + ++.-.+.+|.++...|++..|...+++ ..++.+.+..|++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 45677888888888899999999999998764 3 566778899999999999999999998 4677788877776
Q ss_pred c-----hhHHHhhh
Q 042077 98 N-----FNEKYLEI 106 (109)
Q Consensus 98 ~-----~~~al~~~ 106 (109)
+ +++|...+
T Consensus 140 ~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 140 LLKLDRLDLARKEL 153 (291)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHH
Confidence 4 45555443
No 75
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.60 E-value=0.049 Score=39.83 Aligned_cols=74 Identities=8% Similarity=-0.010 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+-.....+..++.|+.|+-+-++++.+.+ ++...+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33445667779999999999999999987 6778899999999999999999988763 22344556666666554
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.58 E-value=0.064 Score=35.65 Aligned_cols=51 Identities=6% Similarity=-0.015 Sum_probs=23.3
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
..-+...+.|+.|+-+.++++...+ ++.-.+.+|.+++..|++..|...++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 66 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3334444444444444444444443 23334444444444444444444443
No 77
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.54 E-value=0.087 Score=34.05 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-.+.+=..+..++.|+.|+-+-+|.+.+.+ ++.-.+-+|.||+..|+|..|+..+++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 345556678889999999999999999987 455666799999999999999987765
No 78
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.53 E-value=0.089 Score=37.08 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+..-+...+.|+.|+-+-++++.+.+ ++...+.+|.+++..|++..|...+++. .+.+.++...+..+.|+
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 33445556788999999999999999987 6778899999999999999999999874 44456777777777776
No 79
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.52 E-value=0.08 Score=40.00 Aligned_cols=77 Identities=8% Similarity=-0.018 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----------------hhHHHHHHHHhhcCChHHHHHHHhcC-CCC
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----------------TGVYMQAQALFLGRHYRRPFHLLNAS-KIV 84 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----------------~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~ 84 (109)
...+..+-.-+..++.|+.|+-.-+|.+.+.++. .-.+.+|.||+..|+|..|+..+++. .+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4445555555666777777777777777766532 45556677777777777777666542 222
Q ss_pred CCChhhHHHHhhcc
Q 042077 85 PRDLRFRYLAEQKN 98 (109)
Q Consensus 85 ~~~~~crYLaA~c~ 98 (109)
..++...|..|.++
T Consensus 227 p~~~~a~~~lg~~~ 240 (336)
T 1p5q_A 227 SNNEKGLSRRGEAH 240 (336)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 34444555555443
No 80
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.48 E-value=0.075 Score=35.14 Aligned_cols=56 Identities=11% Similarity=-0.189 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
...+-.-+...+.|+.|+-.-+|++.+.+ ++...+.+|.+|+..|++..|...+++
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444556788999999999999999987 677788999999999999999998876
No 81
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.48 E-value=0.066 Score=34.18 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+..-+...+.|+.|+-+.+|++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus 51 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 51 GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444556788999999999999999987 677889999999999999999998876
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.43 E-value=0.069 Score=37.67 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-C---chhHHHHHHHHhhcCChHHHHHHHhcC-CCCC---CChhhHHH
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-D---PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVP---RDLRFRYL 93 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~---~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~---~~~~crYL 93 (109)
.+.+-..-..++.++.|+.|+=+-++++...+ + ++..|.+|.|++..|+|..|...+++. .+.+ ..+...|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34456666778889999999999999999987 4 567899999999999999999988762 1111 22345666
Q ss_pred Hhhcchh
Q 042077 94 AEQKNFN 100 (109)
Q Consensus 94 aA~c~~~ 100 (109)
.|.|++.
T Consensus 95 lg~~~~~ 101 (261)
T 3qky_A 95 RAMCYYK 101 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6776643
No 83
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.39 E-value=0.045 Score=38.26 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=26.5
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhc-----------CChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLG-----------RHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~-----------gqy~RA~~LL~~ 80 (109)
+...+.++.|+=..+|++.+.+ +++..+.+|.++... |++..|...+++
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 109 (217)
T 2pl2_A 49 QLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence 3445555555555555555554 344445555555555 555555555443
No 84
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.11 Score=35.24 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+.+..+-.-+..++.|+.|+-+.++++.+.+++...+.+|.+++..|++..|...+++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 63 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLND 63 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 356677788888999999999999999998886778899999999999999999998876
No 85
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.34 E-value=0.09 Score=39.71 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
.-+..+-.-++..+.|+.|+-+.+|++.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+....+..+.|+.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3444455567789999999999999999997 7789999999999999999999988763 334556667777777653
No 86
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.32 E-value=0.09 Score=31.00 Aligned_cols=54 Identities=11% Similarity=-0.110 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcCC---chhHHHHHHHHhhc-CChHHHHHHHhc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTND---PTGVYMQAQALFLG-RHYRRPFHLLNA 80 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~~---~~dv~lLAq~~y~~-gqy~RA~~LL~~ 80 (109)
.+-.-+...+.|+.|+-+.+|.+.+.++ +...+.+|.+++.. |++..|...+++
T Consensus 45 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 45 MKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444567789999999999999998865 56778999999999 999999998876
No 87
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.29 E-value=0.079 Score=37.29 Aligned_cols=74 Identities=18% Similarity=0.064 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+..-+...+.++.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44455566788999999999999999886 5677889999999999999999988762 22234566666666654
No 88
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.29 E-value=0.16 Score=35.18 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=41.3
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHh
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAE 95 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA 95 (109)
+-.-+...+.|+.|+-+-+|++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 33445556677777777777777665 5556666777777777777777766653 22233444444444
No 89
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.27 E-value=0.048 Score=37.32 Aligned_cols=51 Identities=16% Similarity=0.011 Sum_probs=46.4
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+...+.|+.|+=.-+|.+.+.+ +|.-.+.+|.||+..|++..|...+++
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345678999999999999999997 788999999999999999999998876
No 90
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.24 E-value=0.086 Score=36.51 Aligned_cols=50 Identities=10% Similarity=-0.067 Sum_probs=29.9
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCchh----HHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPTG----VYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~d----v~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-+...+.|+.|+-+.++++...++++- .+.+|.+++..|++..|...+++
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 445566666666666666663333332 45666666666666666665554
No 91
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.23 E-value=0.11 Score=40.25 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+-.+-.-++..++|+.|+-+.+|++.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+...+...+.++
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33444556788999999999999999987 6778899999999999999999988763 33345666666666655
No 92
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.22 E-value=0.065 Score=32.46 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-C-------chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-D-------PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~-------~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+..-+...+.|+.|+-+.++.+.+.+ + +.-.+.+|.+++..|++..|...+++
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33445556789999999999999999875 3 55778899999999999999998876
No 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.20 E-value=0.082 Score=38.20 Aligned_cols=74 Identities=15% Similarity=0.019 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+..-+...+.|+.|+-+-++.+.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455566778999999999999998886 5677888999999999999999888763 22344556666666654
No 94
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.08 E-value=0.1 Score=36.75 Aligned_cols=72 Identities=7% Similarity=-0.048 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.....++.++.|+.|+=+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344556778999999999999888876 5667778899999999999999877752 22234555555556554
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.99 E-value=0.0096 Score=39.74 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=47.5
Q ss_pred hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 35 KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
++.++.|+=.-.+.....+ ++...|.||.+|+..|+|..|...+++. .+.+.++...+..|.|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY 75 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666666666665554 4567789999999999999999988763 34456778888888776
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.96 E-value=0.08 Score=42.12 Aligned_cols=74 Identities=11% Similarity=0.019 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+-.-+..++.|+.|+-..+|.+.+.+ +++-.+.+|.+|+..|++..|...+++. .+...+....+..|.++
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444455566777777777777777665 4555666777777777777776666542 12233444555555543
No 97
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.86 E-value=0.13 Score=40.59 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----------------hhHHHHHHHHhhcCChHHHHHHHhcC-CC
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----------------TGVYMQAQALFLGRHYRRPFHLLNAS-KI 83 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----------------~dv~lLAq~~y~~gqy~RA~~LL~~~-~L 83 (109)
....++..-..+..++.|+.|+-.-+|.+.+.++. .-.+.+|.||+..|+|..|+..+++. .+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34555666666777778888887777777776532 44556777888888887777766552 22
Q ss_pred CCCChhhHHHHhhcc
Q 042077 84 VPRDLRFRYLAEQKN 98 (109)
Q Consensus 84 ~~~~~~crYLaA~c~ 98 (109)
...++...|-.|.|+
T Consensus 347 ~p~~~~a~~~~g~a~ 361 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQ 361 (457)
T ss_dssp STTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 334555555555554
No 98
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.75 E-value=0.13 Score=39.24 Aligned_cols=74 Identities=11% Similarity=-0.055 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+..-+...+.|+.|+-+.+|++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34445556678888888888888888876 5677788888888888888888877652 22234455555555554
No 99
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.61 E-value=0.044 Score=35.29 Aligned_cols=50 Identities=14% Similarity=-0.047 Sum_probs=45.0
Q ss_pred HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-+...+.++.|+=.-+|++.+.+ +++..+.||.++...|++..|...+++
T Consensus 60 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 60 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678999999999999999997 677889999999999999999998876
No 100
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.56 E-value=0.07 Score=33.05 Aligned_cols=59 Identities=7% Similarity=-0.064 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 40 SAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 40 tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.|+=.-++++...+ ++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 63 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45566677777776 6778899999999999999999988763 22344556666666665
No 101
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.53 E-value=0.072 Score=40.36 Aligned_cols=29 Identities=7% Similarity=-0.103 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhc
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALT 52 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als 52 (109)
.++..-..+..++.|+.|+-.-++.+.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~ 209 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM 209 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 33344444444555555555555544444
No 102
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.48 E-value=0.058 Score=43.15 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
+..+-.-+..++.|+.|+=..+|.+.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+....+..+.|
T Consensus 43 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 43 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33444556778889999999999888876 5677888899999999999998887763 2234455666666666
No 103
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.44 E-value=0.1 Score=34.49 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=43.9
Q ss_pred HHHhCCc--hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLY--SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y--~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+...+.| +.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4567888 999999999999987 677888999999999999999998876
No 104
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.39 E-value=0.16 Score=37.03 Aligned_cols=73 Identities=16% Similarity=0.039 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+..-+...+.|+.|+=+-++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 3344556678999999999999999886 6778888999999999999999888763 22234455555555554
No 105
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.39 E-value=0.25 Score=39.03 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+-.-++..+.|+.|+-..+|++.+.+ ++...|.+|.+|+..|+|..|...+++. .+...+....+..+.++
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33444556788999999999999999987 7789999999999999999999988773 33445555555555554
No 106
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.26 E-value=0.091 Score=39.81 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=47.3
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
-.-++..+.|+.|+-..+|++.+.+ ++...|.+|.+|+..|+|..|...+++. .+...+...+...+.+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3445678999999999999999987 6778899999999999999999999874 3334445555544444
No 107
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.20 E-value=0.27 Score=33.79 Aligned_cols=56 Identities=16% Similarity=0.009 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+..-+...+.|+.|+-+-+|++.+.+ ++...+.+|.+++..|++..|...+++
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34455567789999999999999999987 678889999999999999999998876
No 108
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.16 E-value=0.24 Score=32.72 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=23.1
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
+...+.++.|+-+.++.+...+ ++...+.+|.+++..|++..|...++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555555555444443 33444445555555555555554443
No 109
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.13 E-value=0.36 Score=32.95 Aligned_cols=49 Identities=4% Similarity=-0.151 Sum_probs=24.8
Q ss_pred HHHhCCchhHHHHHHHHHhhcC-Cc-------hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN-DP-------TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~-~~-------~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+...+.|+.|+-+-++++.+.+ ++ +--+.+|.+++..|+|..|...+++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 3445555555555555555544 22 2234455555555555555555544
No 110
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.02 E-value=0.22 Score=38.69 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~ 99 (109)
.-+..+.+-+...+.++.|+-+.++++.+.+ ++...+.+|.+|...|++..|...+++- .+.+.++....+.++++-
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3455667777889999999999999999987 6778889999999999999999988763 334566777777777653
No 111
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.94 E-value=0.32 Score=36.18 Aligned_cols=71 Identities=4% Similarity=-0.005 Sum_probs=51.1
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcCC-c----hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTND-P----TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~~-~----~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
...-+...+.|+.|+-+-++++.+.++ + .-.+.+|.++...|++..|...+++. .+...++...+..|.++
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 366778889999999999998888764 2 24567889999999999999888763 22234555555555544
No 112
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.88 E-value=0.13 Score=32.68 Aligned_cols=45 Identities=7% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 36 HLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 36 h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
...+.|.-+-+|.+.+.+ ++...++||..+|..|+|..|+...++
T Consensus 23 ~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 23 AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 347899999999999997 789999999999999999999998776
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.72 E-value=0.065 Score=35.91 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
+-.....++..+.|+.|+=+.++++.+.+ +++-.+.+|.++...|++..|...+++-
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 44555667889999999999999999886 6778899999999999999999999874
No 114
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.65 E-value=0.44 Score=35.07 Aligned_cols=53 Identities=11% Similarity=-0.050 Sum_probs=35.6
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..-+...+.++.|+-+-++.+.+.+ +++..+.+|.++...|++..|...+++
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33345556777777777777777765 455566677777777777777777665
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.19 E-value=0.28 Score=38.93 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+..+-.-+..++.|+.|+-+.+|.+.+.+ +++..+.+|.+|+..|++..|...+++. .+...+....+..|.++
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33445566788999999999999999987 6778899999999999999999988763 22334555555555443
No 116
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.13 E-value=0.34 Score=35.66 Aligned_cols=50 Identities=2% Similarity=-0.138 Sum_probs=32.5
Q ss_pred HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-++..+.++.|+-+.++.+...+ ++...+.+|.+++..|++..|...+++
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34556667777777777666665 445566677777777777777666654
No 117
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.04 E-value=0.32 Score=36.55 Aligned_cols=56 Identities=14% Similarity=-0.022 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+..-++..+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44556677889999999999999999987 567889999999999999999988765
No 118
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.99 E-value=0.2 Score=35.25 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-C---chhHHHHHHHHhh--------cCChHHHHHHHhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-D---PTGVYMQAQALFL--------GRHYRRPFHLLNA 80 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~---~~dv~lLAq~~y~--------~gqy~RA~~LL~~ 80 (109)
+-.-+...+.|+.|+=+-+|++.+.+ + +...|.+|.|++. .|++..|...+++
T Consensus 58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 34446789999999999999999976 3 3467899999999 9999999998775
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.98 E-value=0.43 Score=34.85 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
+.+...-..++..+.++.|+=.-++++.+.+ +++-.+.||.++...|++..|..++++-
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3455566677899999999999999999997 6778899999999999999999999874
No 120
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.94 E-value=0.099 Score=38.68 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=34.1
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcCCc--hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTNDP--TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~~~--~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
|+.....|+|+.|+=+++++...++++ +-.++++++|...|++..|+.-+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~ 59 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP 59 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc
Confidence 455666777777777777765554422 2336667777777777777776655
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=92.91 E-value=0.18 Score=36.86 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+-.-++..+.|+.|+-..+|++.+.+ ++.-.+.+|.+|+..|+|..|...+++
T Consensus 43 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 43 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334456678999999999999999987 677889999999999999999988765
No 122
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.35 E-value=0.83 Score=31.57 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+...-..+...+.|+.|+-+.++++.+.+ ++ .-.+.+|.+++..|+|..|...+++
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455556677888999999999999988875 33 3456789999999999999887764
No 123
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.21 E-value=0.58 Score=28.76 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcC---C----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN---D----PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~----~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-+..+-.-+...+.|+.|+-+.++.+.+.+ + ..-.+.+|.+++..|+|..|...+++
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566667889999999999999888764 2 23567789999999999999887765
No 124
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.10 E-value=0.63 Score=28.62 Aligned_cols=58 Identities=7% Similarity=0.038 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC---Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN---DP----TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~~----~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+..+-.-+...+.|+.|+-+.++.+.+.+ ++ .-.+.+|.+++..|+|..|...+++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566677789999999999999998874 22 2567899999999999999998875
No 125
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.07 E-value=0.38 Score=37.94 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCc-hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLY-SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y-~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.| +.|+=+-+|.+.+.+ +++..+.||.+|+..|++..|...+++
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444556666 666666666666655 455556666666666666666665554
No 126
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=92.02 E-value=0.44 Score=32.41 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhc------CCc---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALT------NDP---TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als------~~~---~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-+..+-.-+...+.|+.|+-+.++.+.+. ++| ...+.+|.+++..|++..|...+++
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344555666788999999999999999882 133 3567899999999999999998875
No 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.98 E-value=0.45 Score=37.92 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=54.3
Q ss_pred HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
.+..++.|+.|+=..+|.+.+.+ ++...+.+|.+|+..|+|..|...+++. .+...++...+..|.++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34568899999999999999987 5778889999999999999999988763 33455666666666654
No 128
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.95 E-value=0.68 Score=40.43 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCC
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASK 82 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~ 82 (109)
.+-|-.-+.=+++++.|+-|+=.|.|.+...+ +...=+.||+||...|+|..|+-.|.+.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34466667778899999999999999999998 57899999999999999999999999865
No 129
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.67 E-value=0.19 Score=30.91 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 54 DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.|+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 51 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY 51 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 5667889999999999999999988763 22345566666667765
No 130
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.48 E-value=1.3 Score=30.54 Aligned_cols=52 Identities=4% Similarity=-0.050 Sum_probs=44.7
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcCC-c---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTND-P---TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~~-~---~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-.-+..++.|+.|+-.-++++...++ | +..+.+|.+++..|++..|...+++
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44567899999999999999998863 3 5689999999999999999998875
No 131
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=91.42 E-value=0.81 Score=39.06 Aligned_cols=51 Identities=8% Similarity=-0.111 Sum_probs=27.2
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+..+++|+.|+=.-+|.+.+.+ +++..+-||.+|...|++..|...+++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~ 68 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334455555555555555555554 334444555555555555555555443
No 132
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.26 E-value=0.89 Score=31.51 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc------C---CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALT------N---DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als------~---~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-+..+..-+..++.|+.|+-+.++++.+. . .+...+.+|.+++..|++..|...+++
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 346667788888999999999999999999873 1 234677899999999999999998876
No 133
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.05 E-value=1 Score=33.02 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
....+...-..+...+.|+.|+=+.++++.+.+ ++ .-.+.+|.+++..|+|..|...+++
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455566677788899999999999999999976 33 2467899999999999999998765
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.97 E-value=0.49 Score=39.31 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=53.7
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..-++..+.|+.|+=..++++.+.+ +++-.+.+|.+++..|+|..|...+++. .+...++...+-.|.|+
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456778999999999999999987 6677788999999999999999877763 23344556666566554
No 135
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=90.77 E-value=0.67 Score=32.14 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhc------CCc---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALT------NDP---TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als------~~~---~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+..-+...+.|+.|+-+.++.+.+. ++| .-.+.+|.+++..|++..|...+++
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445566778899999999999999882 233 3567789999999999999998876
No 136
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.94 E-value=1 Score=30.47 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhc-----C-Cc---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALT-----N-DP---TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als-----~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-+..+-.-+...+.|+.|+-+.++.+.+. + +| ...+.+|.+++..|++..|...+++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3445566677788999999999999999884 2 23 3667899999999999999998876
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=88.99 E-value=1.5 Score=31.47 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=28.3
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCch-------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPT-------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~-------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-+..++.|+.|+.+-+|++.+..+.. -...+|.+|+..|+|..|....++
T Consensus 124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 180 (293)
T 3u3w_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445566666666666666543111 245566666666666666655543
No 138
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=88.98 E-value=0.8 Score=39.12 Aligned_cols=46 Identities=4% Similarity=-0.026 Sum_probs=21.8
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
.++.|+.|+=.-+|.+.+.+ +++..+.||.+|...|++..|...++
T Consensus 55 ~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555555555444443 33344444555555555555444443
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=88.39 E-value=3.3 Score=29.64 Aligned_cols=61 Identities=11% Similarity=-0.029 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cchh-----HH-HHHHHHhhcCChHHHHHHHhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTG-----VY-MQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~d-----v~-lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+....+...+...+.++.|+.|+-.-+++....+ +|+. .+ .++.+++..|+|..|...+++
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~ 140 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 3456677778899999999999999999988765 3331 11 378889989999999987765
No 140
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=88.38 E-value=0.56 Score=36.66 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=29.0
Q ss_pred HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCC-hHHHHHHHhc
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRH-YRRPFHLLNA 80 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gq-y~RA~~LL~~ 80 (109)
..++.|+.|+=.-+|++.+.+ ++.--+.+|.++...|+ +..|+..+++
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 445666666666666666665 34444556666666665 6666665554
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=88.38 E-value=1 Score=28.83 Aligned_cols=56 Identities=5% Similarity=0.095 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cch-------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPT-------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~-------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-++..+.|+.|+=..+|.+.+.+ ++. ..+-+|.++...|+|..|+...++
T Consensus 45 ~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 45 YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344556789999999999999999876 332 344578888999999999988765
No 142
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=88.25 E-value=1.1 Score=35.28 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCCh-HHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 39 SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHY-RRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 39 ~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy-~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
+.|+-..+++....+ ++.-.+.+|.+++..|+| ..|...+++. .+...++...+..|.|+
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 147 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 334444455555554 567889999999999999 9999988763 33355667777777765
No 143
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.23 E-value=1.6 Score=30.09 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC---C----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN---D----PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~----~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-+..+..-+...+.|+.|+-+.++.+.+.. + +.-.+.+|.+++..|++..|...+++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34455667778889999999999999888742 2 23567889999999999999987765
No 144
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=88.22 E-value=2.3 Score=33.08 Aligned_cols=74 Identities=4% Similarity=-0.092 Sum_probs=58.0
Q ss_pred HHHhCC-chhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHH
Q 042077 32 CVSKHL-YSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKY 103 (109)
Q Consensus 32 ~L~~h~-Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al 103 (109)
+...+. |+.|+=+.+|++.+.+ ++.--+.+|.++...|+|..|+..+++. .+..++..+.+-.|.++ |++|+
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 345676 9999999999999997 6778889999999999999999988774 34456666666666654 56666
Q ss_pred hh
Q 042077 104 LE 105 (109)
Q Consensus 104 ~~ 105 (109)
..
T Consensus 221 ~~ 222 (382)
T 2h6f_A 221 QY 222 (382)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=87.99 E-value=4.4 Score=28.95 Aligned_cols=61 Identities=11% Similarity=-0.028 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch-------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT-------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~-------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.++.+...+..++.++.|+.|+=+.++.+...+... -.+.+|.++...|+|..|...+++
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 140 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456677788889999999999999999888765322 245678888999999999997654
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=87.90 E-value=1.2 Score=29.12 Aligned_cols=56 Identities=5% Similarity=-0.161 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC---Cch----hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN---DPT----GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~~~----dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.|+.|+-+.++.+.+.. ++. ....+|.+++..|++..|...+++
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 44445566778999999999999887753 222 236889999999999999887765
No 147
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=87.88 E-value=2.8 Score=30.16 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+...-..+...+.|+.|+=+.++++.+.+ ++ .-.+.+|.+++..|+|..|...+++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 72 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344555667788999999999999998876 33 3456789999999999999887654
No 148
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=87.55 E-value=0.73 Score=31.96 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=49.7
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcC----ChHHHHHHHhcCCCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGR----HYRRPFHLLNASKIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~g----qy~RA~~LL~~~~L~~~~~~crYLaA~c~ 98 (109)
+-.-+...+.++.|+-|-+|.... ++++..+.||.+|.. | ++.+|...+++. ....++...+-.|.++
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKA-VEAGSKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Confidence 334445578999999999997654 678889999999888 6 899999988774 2345566666666554
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=87.52 E-value=2.4 Score=29.56 Aligned_cols=50 Identities=6% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNA 80 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~ 80 (109)
..+...+.++.|+-+-+|.+. .+++...+.||.+|+. .|++..|...+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 67 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK 67 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 344455666666666666555 3345556666666666 6666666665554
No 150
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.75 E-value=3.3 Score=29.87 Aligned_cols=57 Identities=7% Similarity=-0.109 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCCchh--------HHHHHHHHhhcCChHHHHHHHhcC
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTG--------VYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~d--------v~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
+..+-.-+..++.|+.|+-+-++++.+.++..+ .+-++.|+...|++..|...+++.
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566677889999999999999998864332 356889999999999999998874
No 151
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.61 E-value=1.7 Score=36.05 Aligned_cols=64 Identities=8% Similarity=-0.107 Sum_probs=33.1
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
..+.|+. +=+-+|++.+.+ +++..+.+|.++...|++..|...+++. .+...+...++-.|.++
T Consensus 513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 3444444 444555555554 3445556666666666666666666553 22223334444444444
No 152
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.66 E-value=2.8 Score=33.32 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc----C--Cch---hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALT----N--DPT---GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als----~--~~~---dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..-+..+..-+.+++.|+.|+-+..|++.+. | .|+ ..+-||.+|...|+|..|..++++
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44556666777889999999999999999875 2 333 677899999999999999998876
No 153
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=85.45 E-value=3.4 Score=29.66 Aligned_cols=56 Identities=5% Similarity=-0.018 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cch------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPT------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.|+.|+=+.++.+.+.+ .++ ..+.+|.+++..|++..|...+++
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44455567778999999999999888864 222 667889999999999999888765
No 154
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=85.33 E-value=0.2 Score=29.94 Aligned_cols=53 Identities=13% Similarity=-0.004 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcCC-------chhHHHHHHHHhhcCChHHHHHHHh
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTND-------PTGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~~-------~~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
.+-.-+...+.|+.|+-+.+|.+.+.++ +.-.+.+|.++...|++..|...++
T Consensus 43 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 43 NKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 3444567789999999999999999875 3445666667666666665554443
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=85.26 E-value=1.6 Score=31.29 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCC-------chhHHHHHHHHhhcCChHHH-HHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTND-------PTGVYMQAQALFLGRHYRRP-FHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-------~~dv~lLAq~~y~~gqy~RA-~~LL~~ 80 (109)
+..+-.-+..++.|+.|+-+.+|.+.+..+ ..--+.+|.+|+..|++..| ...+++
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 444555677899999999999998887642 23457889999999999999 655554
No 156
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.10 E-value=4.7 Score=31.47 Aligned_cols=59 Identities=7% Similarity=-0.083 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.-+..++...+..+.+..|+-++.++++..+ +..-...|-.+|+++|+...|....++
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455666778889999999999999999998 555677788999999999888776553
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=84.74 E-value=3 Score=30.44 Aligned_cols=56 Identities=5% Similarity=-0.044 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCC-ch------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTND-PT------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~~------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.|+.|+-+.++.+.+.++ ++ ..+.+|.+|+..|++..|...+++
T Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 334455677889999999999999888752 22 567899999999999999988865
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=84.53 E-value=2.1 Score=27.87 Aligned_cols=58 Identities=5% Similarity=-0.129 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC---C----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN---D----PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~----~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+..+-.-+...+.|+.|+-+.++.+.+.. + ..-.+.+|.+++..|++..|...+++
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566667889999999999999888653 2 23567889999999999999887765
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=83.95 E-value=3.2 Score=23.46 Aligned_cols=44 Identities=16% Similarity=0.029 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR 69 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g 69 (109)
..+-.-+...+.|+.|+-+.+|++.+.+ ++...+.+|.++...|
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 3444556778999999999999999987 6677788888887654
No 160
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=83.81 E-value=2.8 Score=27.35 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=24.7
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077 36 HLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNA 80 (109)
Q Consensus 36 h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~ 80 (109)
..++.|+-|-.|.... +++...+.||.+|+. .+++.+|...+++
T Consensus 39 ~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 86 (138)
T 1klx_A 39 INKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86 (138)
T ss_dssp SCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 3344455555555443 455566666666665 5566666665554
No 161
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=83.76 E-value=4.1 Score=32.65 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhc----C--Cch---hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALT----N--DPT---GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als----~--~~~---dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..-+..+-.-+.+++.|+.|+-+.+|.+.+. | .|+ ..+-||.+|...|+|..|..++++
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3445556667788999999999999998875 2 233 567799999999999999998876
No 162
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=83.70 E-value=3.7 Score=30.39 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhc---CC---chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALT---ND---PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als---~~---~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+-.-+..++.|+.|+-+-++.+.+. ++ +...+.+|.+++..|++..|...+++
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445567899999999999998854 22 44688999999999999999998876
No 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=83.23 E-value=3.4 Score=30.46 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=24.3
Q ss_pred HHHhCCchhHHHHHHHHHhhcC---C-c---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTN---D-P---TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~---~-~---~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..++.|+.|+-+.++.+.+.. + | ...+.+|.+++..|++..|...+++
T Consensus 234 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 234 KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445555555555555555421 1 1 2344555555555555555554443
No 164
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=82.30 E-value=4.9 Score=32.72 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc----C--Cch---hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALT----N--DPT---GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als----~--~~~---dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..-+-.+..-+.+++.|+.|+-+.+|.+.+. | .|+ ...-||.+|...|+|..|..++++
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445556666778999999999999998885 2 233 567799999999999999988775
No 165
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=82.17 E-value=5.1 Score=27.83 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=22.8
Q ss_pred hCCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077 35 KHLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNA 80 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~ 80 (109)
.+.++.|+-|-+|.+.+. ++...+.||.+|+. .|++..|...+++
T Consensus 55 ~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 103 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSK 103 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHH
Confidence 445555555555544442 44455555555555 5555555554443
No 166
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=81.56 E-value=4.9 Score=29.57 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCC-c------hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTND-P------TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~------~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+..+-.-+...+.|+.|+-+-+|.+.+.+. + ...+-+|.+|+..|+|..|...+++
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334445567789999999999999988752 1 2567799999999999999987765
No 167
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=78.28 E-value=10 Score=24.80 Aligned_cols=45 Identities=11% Similarity=-0.137 Sum_probs=38.3
Q ss_pred CCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 36 HLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 36 h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+....|+=.-+|.+.+.+ +++-.+.+|.++...|++..|...+++
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 344557888899999987 678899999999999999999998876
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=77.79 E-value=4.1 Score=28.79 Aligned_cols=48 Identities=19% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHhCCchhHHHHHHHHHhh-------cCC-chhH----HHHHHHHhhcCChHHHHHHHhc
Q 042077 33 VSKHLYSSAIFFADKIAAL-------TND-PTGV----YMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~al-------s~~-~~dv----~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
...+.|+.|+=..||.+.+ .++ +..- |-.|.++...|+|..|+.-.++
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 4579999999999999999 653 3334 6889999999999999887765
No 169
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=77.09 E-value=2.2 Score=25.00 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh-hHHHHhhcc
Q 042077 58 VYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR-FRYLAEQKN 98 (109)
Q Consensus 58 v~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~-crYLaA~c~ 98 (109)
.+-.|.+++..|+|..|...+++. .+...++. ..+..|.|+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~ 45 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAY 45 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 467899999999999999988763 22345666 667777765
No 170
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=76.68 E-value=15 Score=25.03 Aligned_cols=46 Identities=7% Similarity=-0.058 Sum_probs=22.6
Q ss_pred hCCchhHHHHHHHHHhhcCC---chhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077 35 KHLYSSAIFFADKIAALTND---PTGVYMQAQALFL----GRHYRRPFHLLNA 80 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~~---~~dv~lLAq~~y~----~gqy~RA~~LL~~ 80 (109)
...++.|+-|-+|.....++ ++..+.||.+|.. .+++.+|...+++
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 44455555555555555543 4455555555554 4445555554444
No 171
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=76.33 E-value=2.7 Score=32.79 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=40.0
Q ss_pred HHHHHHhhc-CCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCC--CChhhHHHHhhcc
Q 042077 44 FADKIAALT-NDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVP--RDLRFRYLAEQKN 98 (109)
Q Consensus 44 ~ADKl~als-~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~--~~~~crYLaA~c~ 98 (109)
.-++++... +++..++.+|++++..|++..|+.++++. +... .++.|+.+.++++
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~ 146 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA 146 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH
Confidence 344444443 34556799999999999999999999875 2111 5788888888876
No 172
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.23 E-value=8.5 Score=27.63 Aligned_cols=62 Identities=10% Similarity=-0.113 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc---CCc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 19 KEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALT---NDP----TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 19 ~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als---~~~----~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
++.++.+.....-+...+.|+.|+-.-+|.+.+. +++ ....-+|.+|...|+|..|+..+++
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4567777888888889999999999999998885 343 2445789999999999999887765
No 173
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.18 E-value=2.1 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHhhcCC---hHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077 53 NDPTGVYMQAQALFLGRH---YRRPFHLLNAS-KIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 53 ~~~~dv~lLAq~~y~~gq---y~RA~~LL~~~-~L~~~~~~crYLaA~c~ 98 (109)
++|+..+-+|+++|..+. ...|..++++. .+...++.-+++.|.-.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~ 53 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDH 53 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHH
Confidence 377888999999976665 68888888764 45577888888888754
No 174
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=76.18 E-value=8.3 Score=30.95 Aligned_cols=51 Identities=6% Similarity=-0.100 Sum_probs=43.9
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
..+.++.++.|+=+.+|.+.+.++.....++|.++...|++..|...+.+.
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 355689999999999999999866556678899999999999999988763
No 175
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=75.86 E-value=2.8 Score=29.70 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=34.8
Q ss_pred CchhHHHHHHHHHhhc-C--CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 37 LYSSAIFFADKIAALT-N--DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 37 ~Y~tAiF~ADKl~als-~--~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+.||-+=++++..+ + ..+-.|.||-.+|+.|+|.+|...++.
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3456777777877766 3 356889999999999999999988776
No 176
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=75.34 E-value=2.5 Score=26.30 Aligned_cols=46 Identities=2% Similarity=0.030 Sum_probs=33.4
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHhcC-------C-CCCCChhhHHHHhhcch
Q 042077 54 DPTGVYMQAQALFLGRHYRRPFHLLNAS-------K-IVPRDLRFRYLAEQKNF 99 (109)
Q Consensus 54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~~-------~-L~~~~~~crYLaA~c~~ 99 (109)
+++|-|-+|+.+|..|+|.+|..-++.. + .....+.+.+..|.|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~ 57 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY 57 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH
Confidence 6789999999999999999999876541 0 11234556666677764
No 177
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=74.16 E-value=5 Score=26.06 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=39.6
Q ss_pred hCCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhcC
Q 042077 35 KHLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNAS 81 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~~ 81 (109)
...++.|+.|-+|.... ++++..+.||.+|.. .+++.+|...+++.
T Consensus 74 ~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 57888899999997765 788999999999999 89999999988764
No 178
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=73.03 E-value=12 Score=28.80 Aligned_cols=69 Identities=7% Similarity=-0.030 Sum_probs=49.9
Q ss_pred HHHHHHH----hCCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhcCCCCCCChhhHHHHhhcc
Q 042077 28 LVRDCVS----KHLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNASKIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 28 ~v~~~L~----~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~ 98 (109)
+=.-+.. ...++.|+-|-.|.... ++++..+.||.+|+. .+++.+|...+++.- ...++...+..|.++
T Consensus 45 lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y 121 (490)
T 2xm6_A 45 LGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGLPQAQQNLGVMY 121 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 3344555 68899999999998765 788889999999998 899999998887642 233555555555543
No 179
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=72.97 E-value=7.8 Score=28.12 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=35.5
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCch------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPT------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-++.++.++.|+=+.++.+...+..+ -...+|.+++..|++.+|...+++
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 78 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 78 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34567888888888888777664221 245677888888888888777654
No 180
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=71.82 E-value=7.2 Score=28.16 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=36.2
Q ss_pred HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.++.++.|+=.-++.+...+ +++-.+.||.+|...|++..|...+.+
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34455556555577777776 677889999999999999999988765
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.83 E-value=11 Score=27.59 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch------------------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT------------------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~------------------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+++-|.++ .++.|+.|+=.-.+++..+++.. .+.-||.+|+..|+|..|...+++
T Consensus 7 ~l~~a~~l~----~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 7 KLEEARRLV----NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp HHHHHHHHH----HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHH----HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555554 48999999988888887775322 378899999999999999998875
No 182
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=70.11 E-value=9 Score=27.78 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcC---Cch----hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTN---DPT----GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~---~~~----dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+-.-+..++.|+.|+=+.++.+.+.+ ++. ..+.+|.+++..|+|..|...+++
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 118 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334456678999999999999888874 221 246799999999999999887764
No 183
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=69.59 E-value=20 Score=26.27 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHHHhCCchhHHHHHHHHHhhcCC-c-------hhHHHHHHHHhhcCChHHHHHHHh
Q 042077 30 RDCVSKHLYSSAIFFADKIAALTND-P-------TGVYMQAQALFLGRHYRRPFHLLN 79 (109)
Q Consensus 30 ~~~L~~h~Y~tAiF~ADKl~als~~-~-------~dv~lLAq~~y~~gqy~RA~~LL~ 79 (109)
.-+...+.|+.|+-+.+|.+.+.+. + ...+.+|.++...|+|..|...++
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 206 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3344555666666666665555421 1 122345566666666655555443
No 184
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=69.47 E-value=20 Score=25.78 Aligned_cols=57 Identities=12% Similarity=0.034 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc------hhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DP------TGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~------~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
+..+-.-+...+.|+.|+=+-+|.+.+.+ ++ ...+-++.|++..|++..|...+++.
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444555667788888888888777753 11 13344566777778888887777663
No 185
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=68.59 E-value=4.4 Score=27.88 Aligned_cols=40 Identities=10% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhc-C--CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 41 AIFFADKIAALT-N--DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 41 AiF~ADKl~als-~--~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+|.+=+.++.-+ + .-+-+|.||..+|+.|+|.+|...+..
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445555555533 1 225799999999999999999997765
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.06 E-value=17 Score=26.62 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcCC----c---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTND----P---TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~~----~---~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
..+..-+.+++.|+.|+-.-+++...+.. + +-...++++|...|+|.+|..++++
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34566678899999999999998887641 1 2456778999999999999998765
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=64.94 E-value=33 Score=24.00 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC-c------h------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-P------T------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~------~------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.+.+-..=......+.|+.|+..-+|.+.+.++ | . --+-+|.|+...|+|..|+....+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555667799999999999999999975 1 1 345678899999999998887655
No 188
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=64.54 E-value=10 Score=28.17 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 37 LYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 37 ~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.++.|+..-+|...+.+ .+...+.+|.++...|+|..|....++
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 36677888888888776 566778889999999999998887765
No 189
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=64.41 E-value=9.9 Score=29.49 Aligned_cols=50 Identities=2% Similarity=-0.083 Sum_probs=41.9
Q ss_pred HHHHhCCchhHHHHHHHHHhhc---CCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALT---NDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als---~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-+...+.++.|+-|..+.+... ++.+-..+.++++...|+...|...+++
T Consensus 109 i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 109 AQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445799999999999987665 3556788999999999999999999975
No 190
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=63.39 E-value=6.9 Score=27.37 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhhcC--CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 40 SAIFFADKIAALTN--DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 40 tAiF~ADKl~als~--~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+|-+=+.++.-++ .-+-+|.||-.+|+.|+|.+|...+..
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45555566665443 234689999999999999999887775
No 191
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=62.93 E-value=10 Score=26.79 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcC--CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 41 AIFFADKIAALTN--DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 41 AiF~ADKl~als~--~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+|.+-+.++.-++ .-+-+|.||..+|+.|+|.+|...+..
T Consensus 61 GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4445555555443 234788888888888888888876654
No 192
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=60.73 E-value=36 Score=26.83 Aligned_cols=55 Identities=4% Similarity=-0.054 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcC---Cch------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTN---DPT------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~---~~~------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-..+..+-.++.|+.|+=..+|.+.... .|+ ...-||.+|...|+|.+|..+.++
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~ 354 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR 354 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3445556679999999999999998753 232 556688999999999999998775
No 193
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=60.72 E-value=14 Score=28.35 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=24.9
Q ss_pred hCCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077 35 KHLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNA 80 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~ 80 (109)
...++.|+-|-+|.... ++++..+.||.+|.. .+++..|...+++
T Consensus 236 ~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp CCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 34555555555554432 345555666666655 5666666665554
No 194
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=60.43 E-value=17 Score=27.02 Aligned_cols=63 Identities=6% Similarity=-0.035 Sum_probs=40.3
Q ss_pred hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077 35 KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK 97 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c 97 (109)
.+.++.|+=+-++.+.+.+ ++...+.+|.+|...|++..|...+++. ...+.+....+-.|.|
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3456677777777777776 5566778999999999999999987763 1223344444444444
No 195
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=58.05 E-value=23 Score=25.50 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=35.2
Q ss_pred CCchhHHHHHHHHHhhcC---C----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 36 HLYSSAIFFADKIAALTN---D----PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 36 h~Y~tAiF~ADKl~als~---~----~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.|+.|+=+-+|.+.+.+ + ..-..-+|.+|...|+|..|+..+++
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999999899888764 2 23445678999999999999887765
No 196
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=57.44 E-value=12 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch
Q 042077 21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT 56 (109)
Q Consensus 21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~ 56 (109)
.+--||..+..+..+..|.||..+|.|++.+.++++
T Consensus 206 ~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 206 RTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 356699999999999999999999999999988654
No 197
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=56.95 E-value=25 Score=27.15 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=18.7
Q ss_pred hCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcC-----ChHHHHHHHhc
Q 042077 35 KHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGR-----HYRRPFHLLNA 80 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~g-----qy~RA~~LL~~ 80 (109)
.+.++.|+-|-.|... .++++..+.||.+|+ .| ++.+|...+++
T Consensus 264 ~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp GCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 3344444444444331 124444444444444 22 44444444444
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=54.93 E-value=50 Score=26.24 Aligned_cols=47 Identities=4% Similarity=-0.002 Sum_probs=38.0
Q ss_pred HhCCchhHHHHHHHHHhhcC---Cch------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 34 SKHLYSSAIFFADKIAALTN---DPT------GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 34 ~~h~Y~tAiF~ADKl~als~---~~~------dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
+.+.|+.|+=+-+|.+.+.. .|+ ...-||.+|...|+|..|..+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~ 365 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK 365 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 45689999999999998753 222 455689999999999999998876
No 199
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.33 E-value=25 Score=30.79 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=38.5
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
++..++..++|+ ++-.+...-+ +|-..|++|.||...|+++.|....++.
T Consensus 816 l~~~L~~~~~~~----~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYN----ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHH----HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHH----HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666677665 3445555555 7778999999999999999999999874
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=53.12 E-value=19 Score=27.89 Aligned_cols=60 Identities=18% Similarity=0.070 Sum_probs=44.9
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHHHHH---hhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc
Q 042077 36 HLYSSAIFFADKIAALTNDPTGVYMQAQAL---FLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN 98 (109)
Q Consensus 36 h~Y~tAiF~ADKl~als~~~~dv~lLAq~~---y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~ 98 (109)
..++.|+-|-+|.. .+++...+.||.+| ...|++.+|...+++.- ...++...|-.|.++
T Consensus 231 ~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 231 PDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELLLGKLY 293 (452)
T ss_dssp CCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 47788899999977 67899999999994 47889999999888632 234566666666554
No 201
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=52.67 E-value=26 Score=24.51 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=37.4
Q ss_pred CchhHHHHHHHHhhcC---ChHHHHHHHhcC-CCC-C-CChhhHHHHhhcc-----hhHHHhhh
Q 042077 54 DPTGVYMQAQALFLGR---HYRRPFHLLNAS-KIV-P-RDLRFRYLAEQKN-----FNEKYLEI 106 (109)
Q Consensus 54 ~~~dv~lLAq~~y~~g---qy~RA~~LL~~~-~L~-~-~~~~crYLaA~c~-----~~~al~~~ 106 (109)
+++..|-+|-|+.+++ +..+++.+|+.- ... + .+.-|.|..|..+ |++|..-+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7789999999999999 666999888751 001 1 3457999888755 45555433
No 202
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=52.25 E-value=14 Score=29.26 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch
Q 042077 22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT 56 (109)
Q Consensus 22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~ 56 (109)
+--||..+..+..+..|.||..+|.|++.+.++++
T Consensus 198 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 198 ILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 56699999999999999999999999999977654
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=49.78 E-value=13 Score=26.21 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCCh
Q 042077 38 YSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHY 71 (109)
Q Consensus 38 Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy 71 (109)
|+.|+=.+++.+.+.+ +++..+.++.++...|++
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhccc
Confidence 3444445555555555 333333356666655554
No 204
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=48.08 E-value=45 Score=23.73 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.1
Q ss_pred HHhCCchhHHHHHHHHHhhcC-Cch-hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPT-GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~-dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
...+.++.|+-.-+|++.+.+ +++ --..++.++.+.|++..|..++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 346778888888888888776 444 455678888888889888888776
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=47.78 E-value=17 Score=25.48 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC-----------ChHHHHHHHhcC
Q 042077 38 YSSAIFFADKIAALTN-DPTGVYMQAQALFLGR-----------HYRRPFHLLNAS 81 (109)
Q Consensus 38 Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g-----------qy~RA~~LL~~~ 81 (109)
++.||=.-+|.+.+.+ .++..|-||.+|+..| +|..|+..+++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA 117 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA 117 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence 6788888899999987 5677888999999875 899999988763
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=46.46 E-value=82 Score=25.39 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=40.8
Q ss_pred HHHHhCCchhHHHHHHHHHhhcC---Cc------hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTN---DP------TGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~---~~------~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
....++.|+.|+=+.+|.+.+.. .+ ....-||.+|...|+|..|..+.++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~ 376 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR 376 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35579999999999999998863 22 2566789999999999999988775
No 207
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=46.34 E-value=45 Score=20.20 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc
Q 042077 19 KEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALT 52 (109)
Q Consensus 19 ~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als 52 (109)
...+..|+.....+..+-.|+.|.-+=|++-++.
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~ 56 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999998875
No 208
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=45.90 E-value=35 Score=24.37 Aligned_cols=47 Identities=13% Similarity=-0.155 Sum_probs=36.7
Q ss_pred hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 35 KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
.+.++.|+=.-++.+...+ +++-..-++..+...|++.+|..++++.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5778888888888887776 5556666788888889999999888763
No 209
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.99 E-value=45 Score=29.57 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
.++..++.+++|+-| -.+....+ +|-..|++|.|++..|++..|+...++.
T Consensus 817 ~l~~~l~~~~~~~~~----~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHH----HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHH----HHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455566777777654 33445554 7778999999999999999999999874
No 210
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=41.65 E-value=38 Score=24.34 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhh
Q 042077 56 TGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQ 96 (109)
Q Consensus 56 ~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~ 96 (109)
+=-|..|.||..-|++.-|+..|.+-+--.+++.=-.+.|+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 34599999999999999999999985544566654444443
No 211
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=39.88 E-value=85 Score=21.23 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCchhHHHHHHHHhhcCChHH---HHHHHhcCCCCCC-----ChhhHHHHhhcc-----hhHHHhhhh
Q 042077 53 NDPTGVYMQAQALFLGRHYRR---PFHLLNASKIVPR-----DLRFRYLAEQKN-----FNEKYLEIE 107 (109)
Q Consensus 53 ~~~~dv~lLAq~~y~~gqy~R---A~~LL~~~~L~~~-----~~~crYLaA~c~-----~~~al~~~~ 107 (109)
.+++..|-+|-|+..+++..- ++.+|.. +... .--|.|..|-.+ |++|..-++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~--l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE--LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHH--HTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 367899999999999998765 8888875 2222 346999998865 556655443
No 212
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=35.68 E-value=1.4e+02 Score=22.95 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=41.6
Q ss_pred HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077 33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS 81 (109)
Q Consensus 33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~ 81 (109)
..++.++.|.-.-+|++...| +++--..++..+...|++.+|..++++.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 558899999999999999887 4445567889999999999999999884
No 213
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=33.98 E-value=54 Score=24.88 Aligned_cols=49 Identities=6% Similarity=-0.075 Sum_probs=20.7
Q ss_pred HHHhCCchhHHHHHHHHHhhcCC---chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 32 CVSKHLYSSAIFFADKIAALTND---PTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 32 ~L~~h~Y~tAiF~ADKl~als~~---~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
++..+.|+.|+=.-++......+ .+--|+|+.++-..|++..|...+++
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~ 196 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTE 196 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444443333321 12334444444445555444444443
No 214
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=31.33 E-value=43 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHhCCch
Q 042077 2 LSREPNIPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYS 39 (109)
Q Consensus 2 ~~~~~~~~~d~~~~~~~~~~~~~LR~~v~~~L~~h~Y~ 39 (109)
.+.|..-..-+-..+|+++|.+..-....++++++.-.
T Consensus 6 ~~~~~~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~e 43 (97)
T 4ds1_A 6 MSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLE 43 (97)
T ss_dssp ------CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSH
T ss_pred cccccCCccEEEECCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34455555667788999999999999999999998743
No 215
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=29.40 E-value=1.4e+02 Score=20.39 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhcCCch-hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 26 RGLVRDCVSKHLYSSAIFFADKIAALTNDPT-GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 26 R~~v~~~L~~h~Y~tAiF~ADKl~als~~~~-dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-.+---.--+|.-+.|.=+||=+-...+ .+ -..+=...+...|.|..|..+++.
T Consensus 11 AE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~ 65 (116)
T 2p58_C 11 AEIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNK 65 (116)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCC
Confidence 3333334445666666666666555444 22 222223456666666666666655
No 216
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.22 E-value=1.4e+02 Score=20.35 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=24.5
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCch-hHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPT-GVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~-dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
-.--+|.-+.|.=+||=+-...+ .+ -..+=...+...|.|..|..+++.
T Consensus 15 ~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~ 64 (115)
T 2uwj_G 15 AGSGQHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHG 64 (115)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTT
T ss_pred HHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCC
Confidence 33445555566666665554444 22 122223455556666666555554
No 217
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=27.10 E-value=1e+02 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc---CCCCCCChhhHHHHhhcchhHHHhh
Q 042077 45 ADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA---SKIVPRDLRFRYLAEQKNFNEKYLE 105 (109)
Q Consensus 45 ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~---~~L~~~~~~crYLaA~c~~~~al~~ 105 (109)
|.|++.+-|..+.+.--|+..|..|+|+-|.+++.. .+ ..+..-|.|.|.++-+=++..
T Consensus 439 a~~~v~~~gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~--p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 439 AGRYVEYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAE--PDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhc
No 218
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=26.67 E-value=46 Score=18.72 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=13.6
Q ss_pred CCCCCcccccchhhhH
Q 042077 4 REPNIPLDLQFHNEKK 19 (109)
Q Consensus 4 ~~~~~~~d~~~~~~~~ 19 (109)
++|.+.+|+.||=+++
T Consensus 1 edPpiSiDLTFHlLR~ 16 (40)
T 2rmf_A 1 DNPSLSIDLTFHLLRT 16 (40)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHH
Confidence 5788999999998873
No 219
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=25.24 E-value=66 Score=26.27 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCC
Q 042077 24 KLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASK 82 (109)
Q Consensus 24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~ 82 (109)
-...+-..|-+.+.|+.|.-+=+++ ++-.-||.|+++.|+|..|+...++.+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 3445556677788888887776654 577789999999999999999888754
No 220
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=25.00 E-value=1e+02 Score=25.89 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=32.9
Q ss_pred HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+|..+.+++|.=|-+++-.-.. .+.-.||+|.++-..|+...|..++++
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36667777777777766544322 355678888777777777777666554
No 221
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=24.06 E-value=1.3e+02 Score=23.95 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhH-HHHHHHHhhc----CChHHHHHHHhcCCC
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGV-YMQAQALFLG----RHYRRPFHLLNASKI 83 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv-~lLAq~~y~~----gqy~RA~~LL~~~~L 83 (109)
+.+.|+-||+.+.+..|+.+| .+++++=. -.--+.||.. ..|.|.+..+-.+++
T Consensus 159 ~e~AV~~cl~~~r~adAllLA-----~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~ 217 (399)
T 2pm7_A 159 IKSAVKNSLENDLMMEAMVIA-----LDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREV 217 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCChHHHHHHH-----HhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCH
Confidence 678999999999999999876 34565544 4444456643 357777776666554
No 222
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=23.38 E-value=1.9e+02 Score=20.42 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 042077 19 KEEIEKLRGLVRDCVSK 35 (109)
Q Consensus 19 ~~~~~~LR~~v~~~L~~ 35 (109)
.+.++-||..+|+.+++
T Consensus 19 ~~~~~~LR~qrHdf~Nk 35 (192)
T 1ixm_A 19 NELIHLLGHSRHDWMNK 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 46789999999998775
No 223
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=23.23 E-value=1.6e+02 Score=22.63 Aligned_cols=46 Identities=13% Similarity=-0.151 Sum_probs=36.5
Q ss_pred hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 35 KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 35 ~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.+.++.|.=+-++.+...+ +++-...++..+...|++.+|..++++
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 6677778888888887776 555666778888899999999988876
No 224
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=21.39 E-value=20 Score=20.48 Aligned_cols=17 Identities=53% Similarity=0.860 Sum_probs=14.0
Q ss_pred CCCCCCcccccchhhhH
Q 042077 3 SREPNIPLDLQFHNEKK 19 (109)
Q Consensus 3 ~~~~~~~~d~~~~~~~~ 19 (109)
+++|-+.+|+.||=+++
T Consensus 1 sedPPiSiDLTFHlLR~ 17 (42)
T 1go9_A 1 SEEPPISLDLTFHLARE 17 (42)
T ss_dssp CCCCCHHHHHHHHC-CC
T ss_pred CCCCCcchhhHHHHHHH
Confidence 58999999999998873
No 225
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=20.75 E-value=1.4e+02 Score=24.26 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh
Q 042077 25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR 89 (109)
Q Consensus 25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~ 89 (109)
-+.++.-|.+.++++-|.=.+.+ +...|+..--+..+|-..|++..|+.++++. ++...+.+
T Consensus 180 Wk~v~~aCv~~~ef~lA~~~~l~---L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~ 242 (449)
T 1b89_A 180 WKEVCFACVDGKEFRLAQMCGLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 242 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHH---HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence 35666778888888888444443 3346776667888999999999999999874 55555644
No 226
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.42 E-value=90 Score=21.28 Aligned_cols=46 Identities=20% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077 31 DCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA 80 (109)
Q Consensus 31 ~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~ 80 (109)
.-+|++.|+.|.-+++.+. .|+=.-|+|.|=.+.|....+..-|.+
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3467899999998887655 788899999999999999988876633
Done!