BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042079
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
VL VDDS V RKIV LK +V AENG ALE L S T +L+
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-------------SEFTP-DLI 50
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLKPS 142
+ D MP M G+ +LKK++ + L GA+ M KP PS
Sbjct: 51 VLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPS 110
Query: 143 DVKKLTGHLIN 153
+ HL+N
Sbjct: 111 QFIEEVKHLLN 121
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P P+ +++
Sbjct: 109 PFTPATLEE 117
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
VL VDDS V RKIV LK +V AENG ALE L S T +L+
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-------------SEFTP-DLI 50
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLKPS 142
+ MP M G+ +LKK++ + L GA+ M KP PS
Sbjct: 51 VLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPS 110
Query: 143 DVKKLTGHLIN 153
+ HL+N
Sbjct: 111 QFIEEVKHLLN 121
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P P+ +++
Sbjct: 110 PFTPATLEE 118
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 5 KELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 51
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 52 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 110
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 111 PFTAATLEE 119
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNL 81
+L VDD R+IV+NLL++ T A++G+ AL L D +
Sbjct: 15 ILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--------------FDF 60
Query: 82 VITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLKP 141
V+TD+ MPGM G +LLK I+ +I E + G +++KP
Sbjct: 61 VVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTA 120
Query: 142 SDVKK 146
+ +K+
Sbjct: 121 ATLKE 125
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPS 142
P +
Sbjct: 109 PFTAA 113
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 53
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 54 -YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVK 112
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 113 PFTAATLEE 121
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 24 LAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
L VDD+ R+IV NLLK V AE+G+ AL N L + G V
Sbjct: 5 LVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG--YGFV 50
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLKPS 142
I+D+ MP M G ELLK I+ I + GA +++KP +
Sbjct: 51 ISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAA 110
Query: 143 DVKK 146
+++
Sbjct: 111 TLEE 114
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 53
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 54 -YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVK 112
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 113 PFTAATLEE 121
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
+I+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 53
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 54 -YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVK 112
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 113 PFTAATLEE 121
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 53
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 54 -YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVK 112
Query: 138 PLKPS 142
P +
Sbjct: 113 PFTAA 117
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
+I+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L V+DS + ++++L+ + + NG A+ FL L T+ +L+
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--------------TRPDLI 55
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK-- 140
I+D MP M GY L + +K + P + LE GA F+ KP K
Sbjct: 56 ISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDV 115
Query: 141 --PSDVKKL 147
S VK+L
Sbjct: 116 VLASHVKRL 124
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ + + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNG-TKVN 80
+L VDDS R+I++N L + V AE+G+ A E L++N TKV
Sbjct: 8 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWE------------KLDANADTKV- 54
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK 140
+ITD+ MP M G +L+KK++ + L+ G +++KP
Sbjct: 55 -LITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT 113
Query: 141 PSDVKK 146
P +K+
Sbjct: 114 PQVLKE 119
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNG-TKVN 80
+L VDDS R+I++N L + V AE+G+ A E L++N TKV
Sbjct: 8 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWE------------KLDANADTKV- 54
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK 140
+ITD+ MP M G +L+KK++ + L+ G +++KP
Sbjct: 55 -LITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
Query: 141 PSDVKK 146
P +K+
Sbjct: 114 PQVLKE 119
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
+I D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -FGFIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 24 LAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
L VDD+ R+I NLLK V AE+G+ AL N L + G V
Sbjct: 5 LVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG--YGFV 50
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLKPS 142
I+D+ MP M G ELLK I+ I + GA +++KP +
Sbjct: 51 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 110
Query: 143 DVKK 146
+++
Sbjct: 111 TLEE 114
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+ + MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 50
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+ + MP M G ELLK I+ I + GA +++K
Sbjct: 51 -YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 110 PFTAATLEE 118
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+ + MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L V D R+IV NLLK V AE+G+ AL N L + G
Sbjct: 5 KELKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 51
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 52 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 110
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 111 PFTAATLEE 119
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 2 KELKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 48
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 49 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 107
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 108 PFTAATLEE 116
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+ + MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VDD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+ + MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNG-TKVN 80
+L VDDS R+I++N L + V AE+G+ A E L++N TKV
Sbjct: 8 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWE------------KLDANADTKV- 54
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK 140
+IT + MP M G +L+KK++ + L+ G +++KP
Sbjct: 55 -LITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
Query: 141 PSDVKK 146
P +K+
Sbjct: 114 PQVLKE 119
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTK 78
+ PH+L V+D +V R ++++ + V A +G + L D
Sbjct: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEYD-------------- 47
Query: 79 VNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINEC-----LEEGAQM 133
+NLVI D +PG G L ++++ + R NE LE GA
Sbjct: 48 INLVIXDINLPGKNGLLLARELREQANVALXF--------LTGRDNEVDKILGLEIGADD 99
Query: 134 FMLKPLKPSDV 144
++ KP P ++
Sbjct: 100 YITKPFNPREL 110
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L VD R+IV NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ P G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVK 108
Query: 138 PLKPS 142
P +
Sbjct: 109 PFTAA 113
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 27/131 (20%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTK 78
+ PH+L V+D +V R ++++ + V A +G + L D
Sbjct: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-------------- 47
Query: 79 VNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINEC-----LEEGAQM 133
+NLVI D +PG G L ++++ + R NE LE GA
Sbjct: 48 INLVIMDINLPGKNGLLLARELREQANVALMF--------LTGRDNEVDKILGLEIGADD 99
Query: 134 FMLKPLKPSDV 144
++ KP P ++
Sbjct: 100 YITKPFNPREL 110
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L +DD V R+ + L++S KV A NG++ L+ E EQ +LV
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF----ESEQP----------DLV 53
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK 140
I D P + G EL+++I+ + + E L GA +++KPL+
Sbjct: 54 ICDLRXPQIDGLELIRRIR--QTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPLE 109
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD ++R+++ + L + + TA +G+ AL N L+ N +++V
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDAL------------NVLSKN--HIDIV 177
Query: 83 ITDYCMPGMTGYELLKKIK 101
++D MP M GY L ++I+
Sbjct: 178 LSDVNMPNMDGYRLTQRIR 196
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L DD +R +++ LL+ + KV + L+ + D + V
Sbjct: 17 MLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--------------YDAV 62
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXN--IPTRINECLEEGAQMFMLKPL 139
I D MPGM G ++LK+++ P I C + GA+ F+ KP+
Sbjct: 63 IVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD ++R+++ + L + + TA +G+ AL L + +++V
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--------------SKNHIDIV 56
Query: 83 ITDYCMPGMTGYELLKKIK 101
++D MP M GY L ++I+
Sbjct: 57 LSDVNMPNMDGYRLTQRIR 75
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L +DD V R+ + L++S KV A NG++ L+ E EQ +LV
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF----ESEQP----------DLV 53
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK 140
I D P + G EL+++I+ + + E L GA +++KPL+
Sbjct: 54 ICDLRXPQIDGLELIRRIR--QTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLE 109
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNL 81
+L V+D V R ++++ + A +G+ ALE LG G +L
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--------------GFTPDL 54
Query: 82 VITDYCMPGMTGYELLKKIK 101
+I D MP M G +LL+ I+
Sbjct: 55 MICDIAMPRMNGLKLLEHIR 74
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGT 77
K L V + + V NLLK V AE+G+ AL N L + G
Sbjct: 3 KELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDAL------------NKLQAGG- 49
Query: 78 KVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
VI+D+ MP M G ELLK I+ I + GA +++K
Sbjct: 50 -YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 138 PLKPSDVKK 146
P + +++
Sbjct: 109 PFTAATLEE 117
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 22 HVLAVDDSIVDRKIVENLLKN-SACKVTTAENGMRALEFL--GLVDEQEQQNNLNSNGTK 78
VL VDD+ + RK+ LK +V ++G AL + GL ++E+Q +++
Sbjct: 63 RVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLT-QREEQGSVDK--LP 119
Query: 79 VNLVITDYCMPGMTGYELLKKIK 101
+ + D MP M GYE ++I+
Sbjct: 120 FDYIFMDCQMPEMDGYEATREIR 142
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
V VDD R ++E L + TT ENG L L +++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA--------------SKTPDVL 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
++D MPGM G LLK+IK
Sbjct: 52 LSDIRMPGMDGLALLKQIK 70
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
V VDD R ++E L + TT ENG L L +++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA--------------SKTPDVL 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
++D MPGM G LLK+IK
Sbjct: 52 LSDIRMPGMDGLALLKQIK 70
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
V VDD R ++E L + TT ENG L L +++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA--------------SKTPDVL 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
++D MPGM G LLK+IK
Sbjct: 52 LSDIRMPGMDGLALLKQIK 70
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTK 78
KP +L VDD + +E +L+ + +V A +G AL Q+ NL
Sbjct: 3 KPHTLLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEAL--------QQIYKNLP----- 49
Query: 79 VNLVITDYCMPGMTGYELLKKIKXX-XXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLK 137
+ +I D +PG+ GY L K+++ +I +I E GA ++ K
Sbjct: 50 -DALICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIA-GFEAGANDYLAK 107
Query: 138 PLKPSDV 144
P +P ++
Sbjct: 108 PFEPQEL 114
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D +PGM G E+LK++K
Sbjct: 52 LLDMKIPGMDGIEILKRMK 70
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVN 80
VL VDD+ R ++++++ + +V A NG A+E K +
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE--------------KYKELKPD 48
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK 140
+V D MP M G + +K+I + E ++ GA+ F++KP +
Sbjct: 49 IVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQ--AMVIEAIKAGAKDFIVKPFQ 106
Query: 141 PSDV 144
PS V
Sbjct: 107 PSRV 110
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 8 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 53
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D +PGM G E+LK++K
Sbjct: 54 LLDMKIPGMDGIEILKRMK 72
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
VL +D++ V R + + LL + C+VTT V E+ + S+ KV V
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTT-------------VSSNEECLRVVSHEHKV--V 54
Query: 83 ITDYCMPGMTGYELLKKI--KXXXXXXXXXXXXXXXXNIPTRINE-CLEEGAQMFMLKPL 139
D CMPG+ Y++ +I K N E C+ G +LKP+
Sbjct: 55 FMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPV 114
Query: 140 KPSDVKKLTGHLI 152
+++ + L+
Sbjct: 115 SLDNIRDVLSDLL 127
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVN 80
VL VDD+ R ++++++ + +V A NG A+E K +
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE--------------KYKELKPD 49
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLK 140
+V D MP M G + +K+I + E ++ GA+ F++KP +
Sbjct: 50 IVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQ--AMVIEAIKAGAKDFIVKPFQ 107
Query: 141 PSDV 144
PS V
Sbjct: 108 PSRV 111
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D +PGM G E+LK++K
Sbjct: 52 LLDMKIPGMDGIEILKRMK 70
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNL 81
+L V+D+ V++++++ +L + + A +G A + + L S G N+
Sbjct: 5 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFD---------KVKELTSKGENYNM 55
Query: 82 VITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLKP 141
+ D MP + G K I+ + + I ECLE G F+ KP+K
Sbjct: 56 IFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFAD-DSNIKECLESGMNGFLSKPIKR 114
Query: 142 SDVKKL 147
+K +
Sbjct: 115 PKLKTI 120
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNL 81
+L V+D+ V++++++ +L + + A +G A + + L S G N+
Sbjct: 4 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFD---------KVKELTSKGENYNM 54
Query: 82 VITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPLKP 141
+ D MP + G K I+ + + I ECLE G F+ KP+K
Sbjct: 55 IFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFAD-DSNIKECLESGMNGFLSKPIKR 113
Query: 142 SDVKKL 147
+K +
Sbjct: 114 PKLKTI 119
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D +PGM G E+LK++K
Sbjct: 52 LLDMKIPGMDGIEILKRMK 70
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
V VDD R ++E L + TT ENG L L +++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA--------------SKTPDVL 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
++ MPGM G LLK+IK
Sbjct: 52 LSXIRMPGMDGLALLKQIK 70
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVN 80
P V +DD RK ++ L+ + V++ + AL L +
Sbjct: 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL--------------SADFAG 49
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPL 139
+VI+D MPGM G L +KI +IP + + +++GA F+ KP
Sbjct: 50 IVISDIRMPGMDGLALFRKI-LALDPDLPMILVTGHGDIPMAV-QAIQDGAYDFIAKPF 106
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVN 80
P V +DD RK ++ L+ + V++ + AL L +
Sbjct: 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL--------------SADFAG 49
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPL 139
+VI+D MPGM G L +KI +IP + + +++GA F+ KP
Sbjct: 50 IVISDIRMPGMDGLALFRKI-LALDPDLPMILVTGHGDIPMAV-QAIQDGAYDFIAKPF 106
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 4 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 49
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D +PGM G E+LK++K
Sbjct: 50 LLDMKIPGMDGIEILKRMK 68
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D +PGM G E+LK++K
Sbjct: 52 LLDMKIPGMDGIEILKRMK 70
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 17 NPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNG 76
N K V+ VDD ++ L+K C + T + + ALE L G
Sbjct: 4 NYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL--------------KG 49
Query: 77 TKVNLVITDYCMPGMTGYELLKKI 100
T V LVI+D MP M G L+++
Sbjct: 50 TSVQLVISDMRMPEMGGEVFLEQV 73
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 17 NPKPPHVLAV---DDSIVDRKIVENL-LKNSACKVTTAENGMRALEFLGLVDEQEQQNNL 72
NP+P V V D + +V L L S V A++G ALE + + +L
Sbjct: 10 NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELI--------KAHL 61
Query: 73 NSNGTKVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQ 132
++ + DY MPGM G ++ ++ + P + + L++GA
Sbjct: 62 P------DVALLDYRMPGMDGAQVAAAVR--SYELPTRVLLISAHDEPAIVYQALQQGAA 113
Query: 133 MFMLK 137
F+LK
Sbjct: 114 GFLLK 118
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNL 81
VL VDD +++ LK +V TA NG +AL+ + T+ +
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALD--------------RARETRPDA 70
Query: 82 VITDYCMPGMTGYELLKKIK 101
VI D PG G+ +L++++
Sbjct: 71 VILDVXXPGXDGFGVLRRLR 90
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D +PGM G E+ K++K
Sbjct: 52 LLDMKIPGMDGIEIAKRMK 70
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNL 81
+L VDD + +++E L +V+TA +G AL +L ++
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--------AARDLP------DI 48
Query: 82 VITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPL 139
++ D MPGM G+ + +K+K + + LE GA F+ KP+
Sbjct: 49 ILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVN 80
P V VDD + R+ + NLL+++ +V T + LE EQ L
Sbjct: 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEH----RRPEQHGCL-------- 52
Query: 81 LVITDYCMPGMTGYELLKKI 100
+ D MPGM+G EL +++
Sbjct: 53 --VLDMRMPGMSGIELQEQL 70
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD + +++E L +V+TA +G AL +L +++
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--------AARDLP------DII 50
Query: 83 ITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPL 139
+ D MPGM G+ + +K+K + + LE GA F+ KP+
Sbjct: 51 LLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVN 80
P +L V+D+ ++ + ++++K + A NG+ A+ + N + +
Sbjct: 9 PKILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI--------------NSSSYD 54
Query: 81 LVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINE 125
LV+ D CMP + G + + I+ +I T NE
Sbjct: 55 LVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENE 99
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
VL ++D V R ++E L KV +AE G A + L + N+V
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL--------------SEKHFNVV 48
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ +P + G E+LK IK
Sbjct: 49 LLXLLLPDVNGLEILKWIK 67
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 80 NLVITDYCMPGMTGYELLKKIK 101
N+VI D MPGMTG E+L +I+
Sbjct: 51 NVVILDIEMPGMTGLEVLAEIR 72
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDD R ++ + + A NG++AL+ + + +LV
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--------------TKERPDLV 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ +PGM G E+LK++K
Sbjct: 52 LLXMKIPGMDGIEILKRMK 70
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVN 80
P VL V+DS + + +K+ + E G A++F+ +K
Sbjct: 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI--------------ERSKPQ 50
Query: 81 LVITDYCMPGMTGYELLKKI 100
L+I D +P M+G ++L I
Sbjct: 51 LIILDLKLPDMSGEDVLDWI 70
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 18/82 (21%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALE--FLGLVDEQEQQNNLNSNGTKV 79
+L VDD R++++ L+ ++ TAENG AL+ F G D
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYD--------------- 47
Query: 80 NLVITDYCMPGMTGYELLKKIK 101
LVI D MPG++G E+ +I+
Sbjct: 48 -LVILDIEMPGISGLEVAGEIR 68
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 17 NPKPPHVLAVDDSIVDRKIVENLLKNS--ACKVTTAENGMRALEFLGLVDEQEQQNNLNS 74
N +P +L +DD + R V+ L+ + V A NG + +E +
Sbjct: 2 NQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIEL--------------A 47
Query: 75 NGTKVNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMF 134
+L++ D MPGM G E L K++ N + L+ GA +
Sbjct: 48 ESLDPDLILLDLNMPGMNGLETLDKLR--EKSLSGRIVVFSVSNHEEDVVTALKRGADGY 105
Query: 135 MLKPLKPSDVKK 146
+LK ++P D+ K
Sbjct: 106 LLKDMEPEDLLK 117
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 20 PPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTK 78
P +VL VDDS+ K + + + + TA +G A+ + N N
Sbjct: 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVI---------KYKNHYPNIDI 86
Query: 79 VNLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKP 138
V L IT MP M G L I + +CL +GA+ F++KP
Sbjct: 87 VTLXIT---MPKMDGITCLSNIMEFDKNARVIMISALGKE--QLVKDCLIKGAKTFIVKP 141
Query: 139 LKPSDV 144
L + V
Sbjct: 142 LDRAKV 147
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In
The Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In
The Inactive State
Length = 387
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFL 60
VL ++D V R ++E L KV +AE G A + L
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL 40
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLV 82
+L VDDS + L+ + TA +G LE L N T +LV
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEAL--------------NATPPDLV 51
Query: 83 ITDYCMPGMTGYELLKKIK 101
+ D G+E L++IK
Sbjct: 52 LLDIXXEPXDGWETLERIK 70
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNL 81
+L VDD I++ + +V TA NG ALE E EQ ++
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF----EAEQP----------DI 48
Query: 82 VITDYCMPGMTGYELLKKIK 101
+I D +P + G E+ K I+
Sbjct: 49 IILDLMLPEIDGLEVAKTIR 68
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 80 NLVITDYCMPGMTGYELLKKIKXXXXXXXXXXXXXXXXNIPTRINECLEEGAQMFMLKPL 139
+LV+ D +PGM G ++ + ++ + LE GA +++KP
Sbjct: 51 DLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDT---VDVVLGLESGADDYIMKPF 107
Query: 140 KP 141
KP
Sbjct: 108 KP 109
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 18/82 (21%)
Query: 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALE--FLGLVDEQEQQNNLNSNGTKV 79
+L VDD R++++ L+ ++ TAENG AL+ F G D
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYD--------------- 47
Query: 80 NLVITDYCMPGMTGYELLKKIK 101
LVI D PG++G E+ +I+
Sbjct: 48 -LVILDIEXPGISGLEVAGEIR 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,638,623
Number of Sequences: 62578
Number of extensions: 108182
Number of successful extensions: 413
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 99
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)