Query 042079
Match_columns 153
No_of_seqs 122 out of 1044
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 4.7E-23 1E-27 151.8 15.6 114 21-150 1-114 (229)
2 PF00072 Response_reg: Respons 99.9 9.7E-21 2.1E-25 124.0 13.6 111 23-149 1-112 (112)
3 COG2204 AtoC Response regulato 99.9 1.2E-20 2.5E-25 149.7 15.1 117 20-152 4-120 (464)
4 COG4566 TtrR Response regulato 99.9 3.6E-20 7.8E-25 129.9 14.0 117 19-151 3-119 (202)
5 COG4753 Response regulator con 99.8 2.6E-20 5.7E-25 147.6 13.0 115 22-152 3-120 (475)
6 COG4565 CitB Response regulato 99.8 2.6E-19 5.6E-24 127.8 13.1 114 21-150 1-116 (224)
7 COG3437 Response regulator con 99.8 6.1E-19 1.3E-23 134.4 13.9 117 18-148 12-129 (360)
8 KOG0519 Sensory transduction h 99.8 7.2E-19 1.6E-23 148.8 13.9 121 18-152 664-784 (786)
9 PLN03029 type-a response regul 99.8 1.1E-17 2.3E-22 123.0 15.6 134 18-151 6-145 (222)
10 COG2197 CitB Response regulato 99.8 2.3E-17 4.9E-22 120.4 15.1 114 22-151 2-117 (211)
11 COG0784 CheY FOG: CheY-like re 99.8 4.5E-17 9.8E-22 109.0 15.2 118 18-151 3-123 (130)
12 PRK10046 dpiA two-component re 99.8 3.2E-17 6.9E-22 120.4 15.4 117 19-151 3-121 (225)
13 COG3706 PleD Response regulato 99.8 2E-17 4.4E-22 130.5 14.2 118 19-150 131-248 (435)
14 PRK11107 hybrid sensory histid 99.7 7.4E-17 1.6E-21 138.4 16.6 119 19-151 666-784 (919)
15 PRK10161 transcriptional regul 99.7 1.5E-16 3.2E-21 116.1 15.8 118 20-151 2-119 (229)
16 PRK11173 two-component respons 99.7 1.3E-16 2.8E-21 117.3 15.5 115 20-151 3-117 (237)
17 PRK10816 DNA-binding transcrip 99.7 1.4E-16 3E-21 115.8 15.5 115 21-151 1-115 (223)
18 PRK09836 DNA-binding transcrip 99.7 1.8E-16 3.9E-21 115.5 15.6 115 21-151 1-115 (227)
19 TIGR02154 PhoB phosphate regul 99.7 2.4E-16 5.1E-21 114.1 15.7 118 20-151 2-119 (226)
20 PRK10529 DNA-binding transcrip 99.7 2.2E-16 4.8E-21 114.8 15.6 114 21-151 2-115 (225)
21 COG3947 Response regulator con 99.7 2.1E-17 4.6E-22 122.9 9.9 113 21-151 1-113 (361)
22 PRK10841 hybrid sensory kinase 99.7 1.8E-16 3.9E-21 136.7 16.8 117 19-151 800-916 (924)
23 PRK10840 transcriptional regul 99.7 2.4E-16 5.2E-21 114.8 14.8 117 19-151 2-123 (216)
24 PRK10643 DNA-binding transcrip 99.7 3.9E-16 8.5E-21 112.8 15.5 115 21-151 1-115 (222)
25 PRK09468 ompR osmolarity respo 99.7 5E-16 1.1E-20 114.0 16.0 116 20-151 5-120 (239)
26 PRK10336 DNA-binding transcrip 99.7 4.6E-16 1E-20 112.3 15.4 115 21-151 1-115 (219)
27 PRK10766 DNA-binding transcrip 99.7 5.4E-16 1.2E-20 112.4 15.6 114 20-150 2-115 (221)
28 PRK11083 DNA-binding response 99.7 5.8E-16 1.3E-20 112.3 15.8 116 20-151 3-118 (228)
29 PRK15347 two component system 99.7 2.7E-16 5.9E-21 135.1 16.2 118 20-151 690-809 (921)
30 PRK11466 hybrid sensory histid 99.7 3.8E-16 8.3E-21 134.3 16.2 118 19-151 680-797 (914)
31 COG4567 Response regulator con 99.7 4.8E-16 1E-20 105.6 12.8 114 20-149 9-122 (182)
32 TIGR02956 TMAO_torS TMAO reduc 99.7 3.8E-16 8.3E-21 134.8 15.4 120 19-152 701-821 (968)
33 TIGR03787 marine_sort_RR prote 99.7 1.1E-15 2.5E-20 111.2 15.1 114 22-151 2-117 (227)
34 PRK10955 DNA-binding transcrip 99.7 1.3E-15 2.9E-20 110.9 15.4 113 21-151 2-114 (232)
35 PRK13856 two-component respons 99.7 1.2E-15 2.7E-20 112.5 15.1 113 22-151 3-116 (241)
36 PRK10701 DNA-binding transcrip 99.7 1.4E-15 3.1E-20 111.8 15.3 113 21-150 2-114 (240)
37 PRK11517 transcriptional regul 99.7 1.7E-15 3.8E-20 109.7 15.5 114 21-151 1-114 (223)
38 CHL00148 orf27 Ycf27; Reviewed 99.7 2.3E-15 5E-20 110.2 15.8 116 19-151 5-120 (240)
39 PRK09958 DNA-binding transcrip 99.7 1.9E-15 4.1E-20 108.2 15.0 115 21-151 1-116 (204)
40 PRK10430 DNA-binding transcrip 99.7 1.5E-15 3.3E-20 112.3 14.8 116 21-150 2-119 (239)
41 PRK11091 aerobic respiration c 99.7 1.2E-15 2.7E-20 129.4 15.9 119 19-152 524-643 (779)
42 TIGR02875 spore_0_A sporulatio 99.7 2E-15 4.4E-20 112.9 15.2 118 20-151 2-121 (262)
43 TIGR01387 cztR_silR_copR heavy 99.7 2.7E-15 5.8E-20 108.1 14.8 113 23-151 1-113 (218)
44 PRK10923 glnG nitrogen regulat 99.7 2.4E-15 5.2E-20 121.2 15.5 116 20-151 3-118 (469)
45 PRK15115 response regulator Gl 99.7 2.3E-15 5E-20 120.5 15.2 116 20-151 5-120 (444)
46 PRK11361 acetoacetate metaboli 99.7 3.4E-15 7.3E-20 119.9 15.9 117 19-151 3-119 (457)
47 PRK09935 transcriptional regul 99.7 6.5E-15 1.4E-19 105.5 15.4 117 19-151 2-120 (210)
48 PRK09581 pleD response regulat 99.7 1.6E-15 3.6E-20 120.5 13.3 117 19-150 154-270 (457)
49 PRK09483 response regulator; P 99.7 5.9E-15 1.3E-19 106.6 14.7 115 21-151 2-118 (217)
50 PRK10365 transcriptional regul 99.7 4.1E-15 8.8E-20 118.8 15.0 116 20-151 5-120 (441)
51 PRK14084 two-component respons 99.6 6.4E-15 1.4E-19 109.1 14.0 113 21-151 1-115 (246)
52 PRK09959 hybrid sensory histid 99.6 5.6E-15 1.2E-19 130.2 16.0 116 20-151 958-1073(1197)
53 TIGR02915 PEP_resp_reg putativ 99.6 6.6E-15 1.4E-19 117.9 14.1 111 23-151 1-116 (445)
54 PRK10710 DNA-binding transcrip 99.6 3.2E-14 7E-19 104.1 16.3 114 21-151 11-124 (240)
55 PRK10360 DNA-binding transcrip 99.6 1.9E-14 4.1E-19 102.4 14.5 113 21-152 2-116 (196)
56 PRK09581 pleD response regulat 99.6 1.7E-14 3.7E-19 114.7 15.8 117 21-151 3-119 (457)
57 PRK09390 fixJ response regulat 99.6 2.5E-14 5.5E-19 101.3 15.0 116 19-150 2-117 (202)
58 TIGR01818 ntrC nitrogen regula 99.6 1.1E-14 2.3E-19 117.2 14.1 113 23-151 1-113 (463)
59 PRK15479 transcriptional regul 99.6 4E-14 8.7E-19 102.2 15.3 115 21-151 1-115 (221)
60 PRK11697 putative two-componen 99.6 2.4E-14 5.2E-19 105.3 13.3 112 21-151 2-115 (238)
61 PRK10610 chemotaxis regulatory 99.6 1.3E-13 2.8E-18 90.0 15.5 119 19-151 4-123 (129)
62 PRK13558 bacterio-opsin activa 99.6 6.5E-14 1.4E-18 117.1 14.1 107 19-141 6-112 (665)
63 PRK10100 DNA-binding transcrip 99.6 1.2E-13 2.6E-18 101.1 13.5 114 18-151 8-124 (216)
64 PRK12555 chemotaxis-specific m 99.6 1.4E-13 3E-18 106.9 14.3 102 21-139 1-106 (337)
65 PRK10403 transcriptional regul 99.6 3.1E-13 6.7E-18 96.8 15.1 116 20-151 6-123 (215)
66 PRK13435 response regulator; P 99.6 3E-13 6.6E-18 92.4 13.6 113 19-151 4-118 (145)
67 PRK10651 transcriptional regul 99.5 4.9E-13 1.1E-17 95.9 15.2 117 19-151 5-123 (216)
68 PRK15369 two component system 99.5 5.7E-13 1.2E-17 94.8 15.2 117 19-151 2-120 (211)
69 PRK11475 DNA-binding transcrip 99.5 3.4E-13 7.5E-18 98.1 12.5 103 33-151 3-112 (207)
70 PRK00742 chemotaxis-specific m 99.5 7E-13 1.5E-17 103.5 14.8 105 19-140 2-110 (354)
71 PRK09191 two-component respons 99.5 2.1E-12 4.5E-17 96.2 14.8 113 20-151 137-251 (261)
72 PRK15411 rcsA colanic acid cap 99.5 1.9E-12 4.1E-17 94.2 14.1 114 21-151 1-120 (207)
73 PRK13837 two-component VirA-li 99.5 2.4E-12 5.2E-17 110.3 16.3 116 20-152 697-812 (828)
74 COG2201 CheB Chemotaxis respon 99.5 9.8E-13 2.1E-17 101.4 11.8 103 21-140 2-108 (350)
75 cd00156 REC Signal receiver do 99.4 9.7E-12 2.1E-16 77.9 13.1 112 24-151 1-112 (113)
76 COG3707 AmiR Response regulato 99.4 3E-12 6.5E-17 90.5 10.2 114 19-149 4-118 (194)
77 PRK13557 histidine kinase; Pro 99.4 1.5E-11 3.2E-16 99.8 15.8 118 20-152 415-533 (540)
78 PRK10693 response regulator of 99.4 8.8E-12 1.9E-16 95.6 10.7 86 49-150 2-88 (303)
79 PRK15029 arginine decarboxylas 99.2 1.9E-10 4.1E-15 97.0 10.8 104 21-140 1-118 (755)
80 COG3279 LytT Response regulato 99.1 2.4E-09 5.2E-14 79.8 10.9 113 21-151 2-116 (244)
81 PRK11107 hybrid sensory histid 98.7 3.9E-07 8.4E-12 78.8 14.7 114 18-149 534-647 (919)
82 PF06490 FleQ: Flagellar regul 98.3 9.4E-06 2E-10 53.2 9.6 108 22-152 1-108 (109)
83 COG3706 PleD Response regulato 98.2 2.3E-06 5E-11 68.3 6.0 85 46-148 14-98 (435)
84 smart00448 REC cheY-homologous 97.8 0.00028 6.1E-09 37.4 7.5 54 22-89 2-55 (55)
85 cd02071 MM_CoA_mut_B12_BD meth 97.6 0.0046 1E-07 41.2 12.4 106 27-148 10-120 (122)
86 PRK02261 methylaspartate mutas 97.6 0.01 2.2E-07 40.4 13.9 117 19-151 2-133 (137)
87 PF03709 OKR_DC_1_N: Orn/Lys/A 97.2 0.0044 9.6E-08 40.9 8.0 93 33-141 6-100 (115)
88 TIGR00640 acid_CoA_mut_C methy 97.1 0.025 5.5E-07 38.3 11.2 108 27-150 13-125 (132)
89 COG4999 Uncharacterized domain 96.9 0.011 2.4E-07 39.1 7.9 109 19-146 10-119 (140)
90 cd02067 B12-binding B12 bindin 96.8 0.052 1.1E-06 35.7 10.6 95 27-137 10-109 (119)
91 PRK10618 phosphotransfer inter 96.4 0.0065 1.4E-07 53.3 5.6 51 18-88 687-737 (894)
92 TIGR01501 MthylAspMutase methy 96.4 0.18 3.8E-06 34.3 11.2 110 27-152 12-132 (134)
93 PRK15399 lysine decarboxylase 96.1 0.06 1.3E-06 46.1 9.6 80 21-118 1-86 (713)
94 cd02070 corrinoid_protein_B12- 96.1 0.17 3.8E-06 36.5 10.7 100 20-136 82-190 (201)
95 PRK15400 lysine decarboxylase 95.8 0.087 1.9E-06 45.2 9.2 80 21-118 1-86 (714)
96 TIGR03815 CpaE_hom_Actino heli 95.4 0.093 2E-06 40.6 7.6 67 77-151 18-85 (322)
97 cd02069 methionine_synthase_B1 95.3 0.41 8.8E-06 35.1 10.2 101 20-136 88-200 (213)
98 PF10087 DUF2325: Uncharacteri 95.2 0.44 9.4E-06 30.2 10.5 88 22-128 1-94 (97)
99 cd02072 Glm_B12_BD B12 binding 95.2 0.57 1.2E-05 31.5 11.4 106 27-148 10-126 (128)
100 PF02310 B12-binding: B12 bind 95.1 0.33 7.1E-06 31.6 8.5 92 29-137 13-111 (121)
101 TIGR02370 pyl_corrinoid methyl 94.7 0.54 1.2E-05 33.9 9.4 92 28-136 96-192 (197)
102 PRK10558 alpha-dehydro-beta-de 94.3 0.84 1.8E-05 34.4 9.9 103 34-151 8-113 (256)
103 cd04728 ThiG Thiazole synthase 94.0 0.86 1.9E-05 34.1 9.2 40 94-136 164-203 (248)
104 TIGR02311 HpaI 2,4-dihydroxyhe 93.9 1.2 2.6E-05 33.4 10.0 74 77-151 32-106 (249)
105 PRK00208 thiG thiazole synthas 93.3 1.2 2.6E-05 33.4 9.0 51 94-147 164-219 (250)
106 COG0512 PabA Anthranilate/para 93.1 0.57 1.2E-05 33.7 6.7 77 21-116 2-82 (191)
107 TIGR03239 GarL 2-dehydro-3-deo 92.2 3.3 7.2E-05 31.1 10.2 73 77-150 32-105 (249)
108 PRK09426 methylmalonyl-CoA mut 92.0 3.3 7.2E-05 35.9 11.1 106 27-148 593-703 (714)
109 PRK10128 2-keto-3-deoxy-L-rham 90.9 3.8 8.1E-05 31.2 9.3 73 77-150 38-111 (267)
110 PLN02591 tryptophan synthase 90.7 0.82 1.8E-05 34.4 5.6 57 92-151 65-127 (250)
111 PRK13111 trpA tryptophan synth 90.6 1.3 2.9E-05 33.4 6.7 58 92-151 75-138 (258)
112 PRK05749 3-deoxy-D-manno-octul 90.6 7.1 0.00015 31.1 11.3 67 79-152 320-386 (425)
113 PRK00043 thiE thiamine-phospha 90.5 5 0.00011 28.7 9.6 56 77-135 123-186 (212)
114 PF02581 TMP-TENI: Thiamine mo 90.3 4.8 0.0001 28.4 9.0 78 38-134 90-174 (180)
115 COG2185 Sbm Methylmalonyl-CoA 90.3 4.4 9.6E-05 27.8 10.1 111 19-145 11-130 (143)
116 TIGR00262 trpA tryptophan synt 90.2 1.2 2.7E-05 33.5 6.3 58 92-151 73-136 (256)
117 cd04724 Tryptophan_synthase_al 89.9 1.4 2.9E-05 32.9 6.2 57 92-151 63-125 (242)
118 PRK07896 nicotinate-nucleotide 89.6 2.1 4.6E-05 32.9 7.1 94 22-134 172-271 (289)
119 TIGR01334 modD putative molybd 89.5 3.1 6.8E-05 31.8 7.9 95 22-135 158-261 (277)
120 PF07688 KaiA: KaiA domain; I 88.7 8.5 0.00018 29.1 9.4 77 23-116 3-79 (283)
121 TIGR00693 thiE thiamine-phosph 88.4 7.1 0.00015 27.7 9.2 55 77-134 115-177 (196)
122 cd02068 radical_SAM_B12_BD B12 88.4 5.3 0.00012 26.3 8.8 103 33-151 5-110 (127)
123 PRK01130 N-acetylmannosamine-6 87.3 9.3 0.0002 27.8 10.6 82 37-136 111-201 (221)
124 PRK08007 para-aminobenzoate sy 87.2 1.7 3.8E-05 30.9 5.1 76 23-115 2-79 (187)
125 PRK07428 nicotinate-nucleotide 87.2 4.8 0.0001 31.0 7.7 94 22-134 168-268 (288)
126 TIGR03151 enACPred_II putative 87.2 12 0.00026 28.9 10.1 82 36-135 101-188 (307)
127 CHL00200 trpA tryptophan synth 86.7 2.1 4.5E-05 32.4 5.5 56 93-151 79-140 (263)
128 cd05212 NAD_bind_m-THF_DH_Cycl 86.7 6.7 0.00015 26.7 7.5 54 18-90 26-83 (140)
129 TIGR00138 gidB 16S rRNA methyl 86.5 9.3 0.0002 27.0 8.5 102 19-141 65-172 (181)
130 cd00452 KDPG_aldolase KDPG and 86.2 4.8 0.0001 28.6 7.0 67 48-134 102-168 (190)
131 cd02065 B12-binding_like B12 b 85.4 6.9 0.00015 25.3 7.0 73 27-115 10-87 (125)
132 PRK03659 glutathione-regulated 85.3 11 0.00025 31.9 9.7 55 77-136 463-517 (601)
133 PRK03958 tRNA 2'-O-methylase; 85.3 11 0.00024 26.8 9.8 58 21-90 32-91 (176)
134 TIGR00566 trpG_papA glutamine 85.0 4.9 0.00011 28.6 6.5 30 23-52 2-31 (188)
135 PRK05848 nicotinate-nucleotide 84.9 13 0.00028 28.4 9.0 95 22-135 154-255 (273)
136 PF03602 Cons_hypoth95: Conser 84.8 7.9 0.00017 27.6 7.4 70 21-104 66-141 (183)
137 cd01573 modD_like ModD; Quinol 84.7 12 0.00027 28.4 8.8 94 23-135 155-256 (272)
138 PRK08385 nicotinate-nucleotide 84.6 16 0.00034 28.0 10.3 94 23-134 157-256 (278)
139 TIGR02026 BchE magnesium-proto 84.3 22 0.00048 29.4 11.1 105 29-150 21-134 (497)
140 PF03328 HpcH_HpaI: HpcH/HpaI 84.2 14 0.0003 26.9 8.9 75 76-151 19-106 (221)
141 PF01081 Aldolase: KDPG and KH 84.2 6 0.00013 28.7 6.6 63 82-148 35-97 (196)
142 cd04727 pdxS PdxS is a subunit 84.1 7.2 0.00016 29.9 7.2 41 92-135 181-223 (283)
143 COG0352 ThiE Thiamine monophos 83.6 15 0.00033 26.9 9.0 68 48-134 109-183 (211)
144 PRK07649 para-aminobenzoate/an 83.3 1.8 4E-05 31.1 3.7 31 23-53 2-32 (195)
145 PRK06843 inosine 5-monophospha 83.2 5.1 0.00011 32.3 6.4 56 77-135 164-220 (404)
146 COG0159 TrpA Tryptophan syntha 83.0 5.4 0.00012 30.3 6.2 53 92-146 80-138 (265)
147 PRK06774 para-aminobenzoate sy 82.9 3.4 7.4E-05 29.4 5.0 31 23-53 2-32 (191)
148 KOG1562 Spermidine synthase [A 82.9 11 0.00024 29.3 7.7 64 21-98 146-215 (337)
149 PF01729 QRPTase_C: Quinolinat 82.7 14 0.00031 26.0 8.1 95 21-134 51-152 (169)
150 KOG4175 Tryptophan synthase al 82.6 4.8 0.0001 29.5 5.4 43 107-149 94-142 (268)
151 PRK06015 keto-hydroxyglutarate 82.1 11 0.00025 27.3 7.4 61 83-147 32-92 (201)
152 cd04729 NanE N-acetylmannosami 82.1 17 0.00037 26.4 10.7 71 48-136 128-205 (219)
153 TIGR00343 pyridoxal 5'-phospha 81.9 9.1 0.0002 29.4 7.0 51 92-145 184-241 (287)
154 PRK05458 guanosine 5'-monophos 81.9 5.1 0.00011 31.4 5.9 55 78-135 111-166 (326)
155 PRK06096 molybdenum transport 81.8 11 0.00023 29.0 7.4 95 22-135 159-262 (284)
156 PF00290 Trp_syntA: Tryptophan 81.2 3.6 7.9E-05 31.1 4.7 55 93-149 74-134 (259)
157 TIGR01579 MiaB-like-C MiaB-lik 81.1 23 0.00049 28.5 9.5 70 78-150 33-106 (414)
158 PLN02335 anthranilate synthase 81.0 12 0.00026 27.5 7.3 81 19-116 17-99 (222)
159 PRK09490 metH B12-dependent me 80.5 21 0.00046 33.1 9.9 85 20-120 751-844 (1229)
160 cd00564 TMP_TenI Thiamine mono 80.1 17 0.00037 25.3 9.5 55 77-135 114-176 (196)
161 TIGR02082 metH 5-methyltetrahy 80.0 31 0.00068 31.9 10.8 100 20-135 732-843 (1178)
162 PLN02274 inosine-5'-monophosph 79.9 7.6 0.00016 32.3 6.5 56 77-135 259-315 (505)
163 PRK05718 keto-hydroxyglutarate 79.7 22 0.00047 26.1 10.8 95 37-148 9-104 (212)
164 PRK00278 trpC indole-3-glycero 79.6 24 0.00052 26.6 12.3 88 32-136 148-239 (260)
165 CHL00101 trpG anthranilate syn 79.5 7.2 0.00016 27.8 5.6 31 23-53 2-32 (190)
166 PRK03562 glutathione-regulated 79.1 28 0.0006 29.8 9.8 54 77-135 463-516 (621)
167 TIGR01182 eda Entner-Doudoroff 78.8 18 0.00039 26.4 7.5 85 47-148 13-97 (204)
168 PF03102 NeuB: NeuB family; I 78.7 11 0.00023 28.3 6.4 78 31-128 56-133 (241)
169 PRK07695 transcriptional regul 78.4 22 0.00047 25.4 8.1 54 77-134 114-174 (201)
170 TIGR03088 stp2 sugar transfera 78.3 27 0.00059 27.0 9.0 64 79-152 273-336 (374)
171 PRK06895 putative anthranilate 78.2 17 0.00038 25.7 7.3 31 21-51 2-32 (190)
172 PLN02871 UDP-sulfoquinovose:DA 78.2 35 0.00076 27.7 10.0 64 79-152 332-398 (465)
173 COG4122 Predicted O-methyltran 78.0 18 0.00038 26.7 7.3 59 20-90 84-144 (219)
174 PF01564 Spermine_synth: Sperm 77.9 23 0.00049 26.5 8.1 69 19-103 99-180 (246)
175 PF05690 ThiG: Thiazole biosyn 77.9 3.9 8.5E-05 30.5 3.8 66 82-150 147-222 (247)
176 PRK05637 anthranilate synthase 77.9 22 0.00047 25.9 7.8 33 21-53 2-34 (208)
177 cd01948 EAL EAL domain. This d 77.8 12 0.00026 26.9 6.5 92 36-142 137-239 (240)
178 TIGR01302 IMP_dehydrog inosine 77.6 12 0.00027 30.5 7.1 55 77-134 235-290 (450)
179 PF01596 Methyltransf_3: O-met 77.5 25 0.00054 25.6 8.1 71 19-101 69-142 (205)
180 PF02254 TrkA_N: TrkA-N domain 77.3 16 0.00034 23.3 8.6 92 21-135 22-114 (116)
181 COG0421 SpeE Spermidine syntha 77.0 31 0.00067 26.5 9.5 69 20-103 100-179 (282)
182 PRK02615 thiamine-phosphate py 76.9 34 0.00074 27.1 9.1 68 48-134 245-319 (347)
183 PF01408 GFO_IDH_MocA: Oxidore 76.6 17 0.00037 23.2 7.8 101 22-150 2-108 (120)
184 PRK05670 anthranilate synthase 76.6 11 0.00024 26.7 5.9 30 23-52 2-31 (189)
185 TIGR01305 GMP_reduct_1 guanosi 76.4 10 0.00022 29.9 5.9 58 77-137 120-178 (343)
186 PRK07455 keto-hydroxyglutarate 76.3 22 0.00048 25.3 7.4 64 50-134 112-177 (187)
187 PF04131 NanE: Putative N-acet 75.6 28 0.0006 25.2 9.2 80 38-136 86-172 (192)
188 PRK13566 anthranilate synthase 75.3 25 0.00054 30.7 8.5 87 19-126 525-614 (720)
189 PF07652 Flavi_DEAD: Flaviviru 75.1 25 0.00053 24.3 7.9 89 19-117 32-135 (148)
190 cd00331 IGPS Indole-3-glycerol 75.0 21 0.00045 25.8 7.1 65 83-150 50-116 (217)
191 PRK15320 transcriptional activ 74.8 22 0.00048 26.1 6.9 99 21-137 2-102 (251)
192 PRK11359 cyclic-di-GMP phospho 74.5 43 0.00093 28.9 9.9 100 36-150 683-793 (799)
193 COG2022 ThiG Uncharacterized e 74.5 7.1 0.00015 29.2 4.4 53 82-137 154-211 (262)
194 TIGR01303 IMP_DH_rel_1 IMP deh 73.8 16 0.00035 30.1 6.8 56 77-135 236-292 (475)
195 COG3836 HpcH 2,4-dihydroxyhept 73.2 37 0.0008 25.5 9.1 73 76-149 36-109 (255)
196 COG0157 NadC Nicotinate-nucleo 73.1 40 0.00087 25.9 9.9 93 22-134 160-259 (280)
197 cd01572 QPRTase Quinolinate ph 72.9 39 0.00085 25.7 9.7 91 22-134 154-251 (268)
198 PRK06552 keto-hydroxyglutarate 72.3 35 0.00077 24.9 10.7 96 38-149 8-106 (213)
199 TIGR01306 GMP_reduct_2 guanosi 72.3 13 0.00029 29.0 5.7 55 79-136 109-164 (321)
200 TIGR00078 nadC nicotinate-nucl 72.2 40 0.00087 25.5 8.8 91 22-134 150-247 (265)
201 PRK10060 RNase II stability mo 72.1 59 0.0013 27.9 10.1 101 35-150 545-656 (663)
202 PRK00748 1-(5-phosphoribosyl)- 72.0 26 0.00055 25.5 7.0 55 79-136 160-219 (233)
203 cd04824 eu_ALAD_PBGS_cysteine_ 71.7 21 0.00045 27.8 6.5 52 77-133 237-288 (320)
204 PRK08072 nicotinate-nucleotide 71.7 43 0.00093 25.6 9.7 92 21-134 159-257 (277)
205 PRK05096 guanosine 5'-monophos 71.6 14 0.0003 29.2 5.6 55 77-134 121-176 (346)
206 PRK00811 spermidine synthase; 71.2 43 0.00094 25.5 10.5 69 20-103 100-180 (283)
207 PRK14329 (dimethylallyl)adenos 70.9 47 0.001 27.3 8.9 97 27-151 34-138 (467)
208 PRK10669 putative cation:proto 70.9 58 0.0012 27.3 9.6 54 77-135 480-533 (558)
209 PRK13125 trpA tryptophan synth 70.7 41 0.00089 25.0 9.5 89 33-138 118-215 (244)
210 TIGR00262 trpA tryptophan synt 70.6 43 0.00093 25.2 9.5 43 93-138 186-228 (256)
211 PRK04180 pyridoxal biosynthesi 70.3 9.8 0.00021 29.3 4.5 52 92-146 190-248 (293)
212 TIGR00736 nifR3_rel_arch TIM-b 70.0 25 0.00054 26.2 6.5 56 77-134 160-217 (231)
213 PLN02716 nicotinate-nucleotide 69.9 51 0.0011 25.7 8.9 101 22-134 172-287 (308)
214 PRK06512 thiamine-phosphate py 69.8 41 0.0009 24.7 7.6 54 77-134 130-189 (221)
215 smart00052 EAL Putative diguan 69.6 36 0.00079 24.4 7.4 91 37-142 139-240 (241)
216 PF14097 SpoVAE: Stage V sporu 69.6 37 0.00081 24.1 8.9 84 22-117 2-94 (180)
217 PRK06106 nicotinate-nucleotide 69.3 42 0.00091 25.8 7.8 91 22-134 166-263 (281)
218 PRK09283 delta-aminolevulinic 69.3 24 0.00052 27.6 6.4 51 77-133 240-290 (323)
219 PLN02889 oxo-acid-lyase/anthra 69.0 40 0.00087 30.4 8.4 84 21-116 82-170 (918)
220 PRK07114 keto-hydroxyglutarate 69.0 44 0.00096 24.7 9.3 97 38-149 10-109 (222)
221 PRK08999 hypothetical protein; 68.9 45 0.00097 25.5 8.0 54 77-134 245-305 (312)
222 PRK09016 quinolinate phosphori 68.6 53 0.0012 25.4 8.2 91 22-134 181-277 (296)
223 PF01729 QRPTase_C: Quinolinat 68.4 21 0.00045 25.2 5.6 55 93-151 66-121 (169)
224 COG5012 Predicted cobalamin bi 68.3 38 0.00081 25.2 7.0 93 29-138 117-214 (227)
225 TIGR00734 hisAF_rel hisA/hisF 68.2 25 0.00055 25.8 6.2 54 80-136 156-212 (221)
226 PRK07764 DNA polymerase III su 68.1 17 0.00036 32.2 6.0 72 76-151 118-191 (824)
227 PRK05567 inosine 5'-monophosph 68.1 27 0.00058 28.9 7.0 56 77-135 239-295 (486)
228 TIGR01859 fruc_bis_ald_ fructo 68.0 28 0.0006 26.7 6.6 68 50-134 152-227 (282)
229 PRK05742 nicotinate-nucleotide 67.8 53 0.0011 25.1 8.2 91 22-134 162-258 (277)
230 PRK13125 trpA tryptophan synth 67.7 20 0.00044 26.6 5.7 53 95-150 64-124 (244)
231 cd06533 Glyco_transf_WecG_TagA 67.5 40 0.00086 23.6 8.9 76 20-114 46-130 (171)
232 PF00478 IMPDH: IMP dehydrogen 66.7 19 0.0004 28.6 5.5 56 78-136 120-176 (352)
233 PF04131 NanE: Putative N-acet 66.1 32 0.0007 24.9 6.1 68 44-132 45-114 (192)
234 cd01840 SGNH_hydrolase_yrhL_li 65.8 38 0.00083 22.8 8.1 85 23-117 2-88 (150)
235 cd00331 IGPS Indole-3-glycerol 65.7 48 0.001 23.9 10.4 79 41-135 118-199 (217)
236 PRK13143 hisH imidazole glycer 64.9 29 0.00063 24.9 5.9 33 21-53 1-33 (200)
237 PRK06806 fructose-bisphosphate 64.8 48 0.001 25.4 7.3 68 50-134 152-227 (281)
238 cd04723 HisA_HisF Phosphoribos 64.6 13 0.00027 27.5 4.1 54 80-136 161-217 (233)
239 TIGR00007 phosphoribosylformim 64.5 19 0.00041 26.2 5.0 56 78-136 158-217 (230)
240 cd04823 ALAD_PBGS_aspartate_ri 64.3 38 0.00082 26.5 6.6 52 77-134 237-288 (320)
241 PRK05282 (alpha)-aspartyl dipe 64.2 57 0.0012 24.3 8.1 63 20-102 31-99 (233)
242 PLN02274 inosine-5'-monophosph 64.2 85 0.0018 26.2 10.3 97 21-135 261-378 (505)
243 PRK11840 bifunctional sulfur c 64.1 69 0.0015 25.2 9.7 55 93-150 237-296 (326)
244 COG0157 NadC Nicotinate-nucleo 64.0 35 0.00076 26.2 6.3 69 79-150 158-228 (280)
245 PRK07807 inosine 5-monophospha 64.0 24 0.00051 29.2 5.9 56 77-135 238-294 (479)
246 TIGR03569 NeuB_NnaB N-acetylne 63.9 68 0.0015 25.2 8.1 75 33-127 78-152 (329)
247 PRK13170 hisH imidazole glycer 63.7 33 0.00072 24.5 6.0 35 21-55 1-35 (196)
248 COG1105 FruK Fructose-1-phosph 63.7 31 0.00067 26.9 6.1 68 77-150 128-195 (310)
249 KOG2550 IMP dehydrogenase/GMP 63.7 29 0.00062 28.3 6.0 55 77-134 262-317 (503)
250 TIGR01815 TrpE-clade3 anthrani 63.6 76 0.0016 27.8 9.0 35 19-53 515-549 (717)
251 PRK07003 DNA polymerase III su 63.4 19 0.00041 31.8 5.3 72 76-151 117-190 (830)
252 PRK08857 para-aminobenzoate sy 63.4 28 0.0006 24.8 5.6 30 23-52 2-31 (193)
253 PRK05703 flhF flagellar biosyn 62.7 83 0.0018 25.6 10.9 94 20-126 251-350 (424)
254 PRK00994 F420-dependent methyl 62.6 29 0.00062 26.1 5.4 60 76-139 58-117 (277)
255 PRK06978 nicotinate-nucleotide 62.5 71 0.0015 24.8 9.8 91 22-134 178-274 (294)
256 PLN02591 tryptophan synthase 62.5 64 0.0014 24.3 9.2 101 23-138 110-219 (250)
257 cd03813 GT1_like_3 This family 62.2 86 0.0019 25.6 10.1 64 79-152 371-440 (475)
258 cd00384 ALAD_PBGS Porphobilino 61.9 41 0.00089 26.2 6.4 50 77-132 232-281 (314)
259 cd00381 IMPDH IMPDH: The catal 61.9 35 0.00075 26.7 6.2 58 76-136 104-162 (325)
260 PRK13384 delta-aminolevulinic 61.8 39 0.00086 26.4 6.3 51 77-133 241-291 (322)
261 COG2265 TrmA SAM-dependent met 61.8 88 0.0019 25.6 10.1 96 19-134 314-413 (432)
262 PRK14958 DNA polymerase III su 61.8 29 0.00063 28.9 6.0 72 75-150 116-189 (509)
263 PRK06543 nicotinate-nucleotide 61.6 72 0.0016 24.5 11.3 91 22-134 161-262 (281)
264 PRK14330 (dimethylallyl)adenos 61.3 62 0.0014 26.2 7.8 72 78-151 37-112 (434)
265 cd01568 QPRTase_NadC Quinolina 61.1 65 0.0014 24.4 7.5 93 22-134 153-252 (269)
266 TIGR00089 RNA modification enz 61.1 85 0.0018 25.3 8.5 70 78-150 36-111 (429)
267 PRK13587 1-(5-phosphoribosyl)- 60.7 17 0.00037 26.9 4.2 54 80-136 164-220 (234)
268 PRK14326 (dimethylallyl)adenos 60.6 99 0.0021 25.8 10.0 97 27-151 24-128 (502)
269 PTZ00314 inosine-5'-monophosph 60.5 33 0.00071 28.5 6.1 56 77-135 252-308 (495)
270 PLN02823 spermine synthase 60.5 58 0.0013 25.6 7.2 69 19-102 126-208 (336)
271 cd04731 HisF The cyclase subun 60.4 65 0.0014 23.7 7.4 52 81-135 44-98 (243)
272 PRK07896 nicotinate-nucleotide 60.1 47 0.001 25.6 6.5 53 94-150 187-239 (289)
273 cd01748 GATase1_IGP_Synthase T 60.0 54 0.0012 23.3 6.6 32 23-54 1-32 (198)
274 TIGR01684 viral_ppase viral ph 59.8 52 0.0011 25.5 6.7 56 76-135 123-189 (301)
275 COG0113 HemB Delta-aminolevuli 59.8 51 0.0011 25.7 6.5 63 52-131 231-293 (330)
276 TIGR00308 TRM1 tRNA(guanine-26 59.6 90 0.0019 25.0 9.5 80 21-119 70-150 (374)
277 PF00490 ALAD: Delta-aminolevu 59.5 30 0.00065 27.1 5.3 65 52-133 228-292 (324)
278 PF00117 GATase: Glutamine ami 59.5 53 0.0011 23.0 6.4 76 24-116 1-80 (192)
279 PRK08185 hypothetical protein; 59.5 68 0.0015 24.7 7.3 65 50-132 148-223 (283)
280 cd04726 KGPDC_HPS 3-Keto-L-gul 59.4 60 0.0013 22.9 11.1 83 34-135 93-184 (202)
281 TIGR01037 pyrD_sub1_fam dihydr 59.4 36 0.00078 26.0 5.9 50 94-146 223-278 (300)
282 PRK09016 quinolinate phosphori 59.2 50 0.0011 25.6 6.5 53 94-150 196-248 (296)
283 CHL00162 thiG thiamin biosynth 59.1 78 0.0017 24.1 9.3 66 82-150 161-236 (267)
284 PRK06559 nicotinate-nucleotide 59.1 82 0.0018 24.4 9.7 91 22-134 169-266 (290)
285 COG0107 HisF Imidazoleglycerol 59.0 43 0.00094 25.1 5.9 53 94-149 188-247 (256)
286 PLN02781 Probable caffeoyl-CoA 58.8 28 0.00062 25.7 5.1 59 20-88 93-154 (234)
287 PRK09522 bifunctional glutamin 58.7 29 0.00063 29.1 5.6 32 21-52 2-33 (531)
288 cd01743 GATase1_Anthranilate_S 58.5 35 0.00075 23.9 5.3 31 23-53 1-31 (184)
289 PRK14191 bifunctional 5,10-met 58.2 41 0.00088 25.9 5.9 62 19-95 156-217 (285)
290 PF03060 NMO: Nitronate monoox 58.2 87 0.0019 24.4 9.0 80 38-135 130-217 (330)
291 PRK08005 epimerase; Validated 57.9 37 0.00081 24.8 5.5 57 78-135 128-189 (210)
292 PRK03612 spermidine synthase; 57.8 1.1E+02 0.0023 25.7 8.7 68 21-103 322-404 (521)
293 TIGR01163 rpe ribulose-phospha 57.8 65 0.0014 22.8 7.6 54 92-148 43-97 (210)
294 PF03808 Glyco_tran_WecB: Glyc 57.4 63 0.0014 22.5 9.6 68 20-103 48-124 (172)
295 PRK12704 phosphodiesterase; Pr 56.9 19 0.00041 30.1 4.2 40 110-149 251-292 (520)
296 PF04321 RmlD_sub_bind: RmlD s 56.8 19 0.00041 27.3 3.9 30 21-50 1-30 (286)
297 cd04730 NPD_like 2-Nitropropan 56.7 74 0.0016 23.1 11.1 56 78-136 122-184 (236)
298 PF06283 ThuA: Trehalose utili 56.6 59 0.0013 23.4 6.4 76 22-115 1-88 (217)
299 PRK14956 DNA polymerase III su 56.6 33 0.00071 28.5 5.4 71 77-151 120-192 (484)
300 COG0118 HisH Glutamine amidotr 56.3 52 0.0011 24.0 5.8 36 21-56 2-37 (204)
301 PF05582 Peptidase_U57: YabG p 56.2 92 0.002 24.0 8.2 104 18-138 103-227 (287)
302 COG0647 NagD Predicted sugar p 56.2 42 0.00092 25.6 5.7 41 77-121 6-53 (269)
303 PF02882 THF_DHG_CYH_C: Tetrah 56.1 27 0.00058 24.4 4.3 59 18-91 34-92 (160)
304 PLN02366 spermidine synthase 55.6 96 0.0021 24.1 9.5 70 20-103 115-195 (308)
305 PRK14960 DNA polymerase III su 55.1 45 0.00097 29.0 6.1 72 76-151 116-189 (702)
306 PRK14089 ipid-A-disaccharide s 54.9 34 0.00073 27.1 5.1 39 77-119 75-113 (347)
307 PLN02589 caffeoyl-CoA O-methyl 54.6 90 0.0019 23.4 7.5 59 20-87 104-165 (247)
308 PRK04302 triosephosphate isome 54.5 82 0.0018 22.9 10.4 41 94-136 161-201 (223)
309 cd04732 HisA HisA. Phosphorib 54.5 22 0.00048 25.9 3.9 52 81-135 163-217 (234)
310 TIGR01823 PabB-fungal aminodeo 54.3 1.5E+02 0.0033 26.1 9.6 82 19-116 4-94 (742)
311 COG3010 NanE Putative N-acetyl 54.2 87 0.0019 23.1 7.1 72 47-137 131-209 (229)
312 PRK07315 fructose-bisphosphate 54.1 1E+02 0.0022 23.8 7.5 67 51-134 154-229 (293)
313 PRK12724 flagellar biosynthesi 54.1 1.2E+02 0.0027 24.9 9.9 95 20-128 252-354 (432)
314 cd03823 GT1_ExpE7_like This fa 54.0 89 0.0019 23.2 10.0 65 79-152 263-327 (359)
315 cd04962 GT1_like_5 This family 53.6 98 0.0021 23.6 9.2 63 79-151 271-333 (371)
316 PF13649 Methyltransf_25: Meth 53.5 35 0.00076 21.1 4.3 66 20-101 24-94 (101)
317 PRK04128 1-(5-phosphoribosyl)- 53.4 89 0.0019 23.0 7.8 67 81-150 46-117 (228)
318 TIGR01125 MiaB-like tRNA modif 53.4 1.2E+02 0.0026 24.5 8.2 66 78-149 36-107 (430)
319 TIGR00096 probable S-adenosylm 53.2 1E+02 0.0022 23.6 9.2 91 21-128 26-118 (276)
320 PRK08385 nicotinate-nucleotide 53.1 60 0.0013 24.9 6.1 66 82-151 158-223 (278)
321 cd01573 modD_like ModD; Quinol 53.1 58 0.0013 24.8 6.0 53 94-150 171-223 (272)
322 PRK10742 putative methyltransf 52.9 98 0.0021 23.4 7.5 98 21-139 111-221 (250)
323 PRK01033 imidazole glycerol ph 52.9 61 0.0013 24.3 6.1 52 80-134 168-223 (258)
324 PF00977 His_biosynth: Histidi 52.9 53 0.0011 24.1 5.7 55 79-136 162-219 (229)
325 PRK12323 DNA polymerase III su 52.7 35 0.00076 29.6 5.1 71 76-150 122-194 (700)
326 COG4148 ModC ABC-type molybdat 52.5 41 0.00088 26.3 5.0 37 77-116 145-187 (352)
327 COG0313 Predicted methyltransf 52.4 1.1E+02 0.0023 23.6 9.8 96 20-131 30-127 (275)
328 PLN02898 HMP-P kinase/thiamin- 52.3 96 0.0021 25.7 7.6 52 77-132 409-467 (502)
329 COG0036 Rpe Pentose-5-phosphat 52.2 86 0.0019 23.2 6.5 60 78-137 131-197 (220)
330 PRK07471 DNA polymerase III su 52.0 58 0.0012 25.9 6.1 71 76-150 139-211 (365)
331 COG1224 TIP49 DNA helicase TIP 52.0 35 0.00075 27.5 4.7 68 79-150 292-372 (450)
332 cd01844 SGNH_hydrolase_like_6 51.8 41 0.00089 23.2 4.8 39 77-117 56-102 (177)
333 TIGR01459 HAD-SF-IIA-hyp4 HAD- 51.7 81 0.0017 23.1 6.5 51 78-132 7-66 (242)
334 PRK09140 2-dehydro-3-deoxy-6-p 51.5 91 0.002 22.6 10.4 94 38-148 5-100 (206)
335 PRK06552 keto-hydroxyglutarate 51.4 94 0.002 22.7 8.0 76 38-134 103-180 (213)
336 cd00532 MGS-like MGS-like doma 51.3 63 0.0014 20.7 5.9 26 29-54 10-35 (112)
337 PRK13398 3-deoxy-7-phosphohept 51.3 99 0.0022 23.5 7.0 72 77-151 161-259 (266)
338 PRK00050 16S rRNA m(4)C1402 me 50.6 23 0.00049 27.4 3.5 58 19-89 43-101 (296)
339 PRK13288 pyrophosphatase PpaX; 50.4 71 0.0015 22.7 6.0 40 92-135 86-125 (214)
340 PF00563 EAL: EAL domain; Int 50.3 39 0.00085 24.1 4.6 83 34-132 138-226 (236)
341 PRK14951 DNA polymerase III su 50.2 59 0.0013 27.9 6.2 72 76-150 122-194 (618)
342 TIGR01452 PGP_euk phosphoglyco 50.1 88 0.0019 23.5 6.6 60 79-142 2-71 (279)
343 PRK09112 DNA polymerase III su 50.1 65 0.0014 25.5 6.0 71 76-150 139-211 (351)
344 cd03422 YedF YedF is a bacteri 50.1 51 0.0011 19.2 4.9 33 19-51 25-57 (69)
345 PF08415 NRPS: Nonribosomal pe 49.7 31 0.00067 19.5 3.2 28 90-117 3-32 (58)
346 PLN02645 phosphoglycolate phos 49.7 71 0.0015 24.6 6.2 50 78-131 27-86 (311)
347 PRK14183 bifunctional 5,10-met 49.7 40 0.00086 25.9 4.6 62 19-95 156-217 (281)
348 COG0626 MetC Cystathionine bet 49.7 1.4E+02 0.003 24.2 8.6 100 19-136 101-206 (396)
349 PRK07765 para-aminobenzoate sy 49.6 99 0.0021 22.5 7.8 33 21-53 1-33 (214)
350 PRK14340 (dimethylallyl)adenos 49.6 1.4E+02 0.0031 24.3 8.3 20 28-47 18-37 (445)
351 PRK13585 1-(5-phosphoribosyl)- 49.5 74 0.0016 23.3 6.0 52 92-146 180-237 (241)
352 PRK07428 nicotinate-nucleotide 49.2 79 0.0017 24.4 6.2 54 94-150 183-236 (288)
353 TIGR00696 wecB_tagA_cpsF bacte 49.1 73 0.0016 22.5 5.7 67 20-102 48-122 (177)
354 PRK05986 cob(I)alamin adenolsy 49.0 88 0.0019 22.6 6.1 47 76-125 113-164 (191)
355 cd01568 QPRTase_NadC Quinolina 48.9 99 0.0021 23.4 6.7 54 95-151 169-222 (269)
356 PRK06106 nicotinate-nucleotide 48.9 1E+02 0.0022 23.7 6.7 55 94-151 181-235 (281)
357 cd01572 QPRTase Quinolinate ph 48.6 90 0.002 23.7 6.4 54 95-151 170-223 (268)
358 TIGR00735 hisF imidazoleglycer 48.5 98 0.0021 23.0 6.6 53 94-149 188-247 (254)
359 PRK14949 DNA polymerase III su 48.3 50 0.0011 29.8 5.5 72 77-151 118-190 (944)
360 PRK06978 nicotinate-nucleotide 48.3 93 0.002 24.1 6.4 68 79-150 176-245 (294)
361 PRK13146 hisH imidazole glycer 48.1 81 0.0017 22.8 5.9 35 21-55 2-38 (209)
362 PRK14952 DNA polymerase III su 48.1 86 0.0019 26.7 6.8 71 77-150 117-188 (584)
363 PRK04457 spermidine synthase; 48.0 1.2E+02 0.0025 22.8 12.2 70 19-103 89-166 (262)
364 PRK05848 nicotinate-nucleotide 47.8 71 0.0015 24.4 5.7 53 94-150 169-222 (273)
365 COG0742 N6-adenine-specific me 47.6 1E+02 0.0023 22.2 10.3 53 21-86 67-122 (187)
366 PRK02290 3-dehydroquinate synt 47.6 80 0.0017 25.0 6.0 69 78-151 88-158 (344)
367 TIGR02253 CTE7 HAD superfamily 47.5 98 0.0021 21.9 6.4 54 92-150 98-162 (221)
368 PRK11018 hypothetical protein; 47.4 62 0.0013 19.5 4.8 33 19-51 34-66 (78)
369 cd01833 XynB_like SGNH_hydrola 47.3 26 0.00056 23.5 3.1 39 76-116 38-87 (157)
370 PRK04132 replication factor C 47.2 68 0.0015 28.7 6.2 71 78-151 630-701 (846)
371 PRK15484 lipopolysaccharide 1, 47.0 1.4E+02 0.003 23.5 11.8 65 79-152 277-342 (380)
372 COG0621 MiaB 2-methylthioadeni 47.0 1.1E+02 0.0024 25.1 7.0 70 78-150 40-113 (437)
373 PTZ00314 inosine-5'-monophosph 46.9 1.7E+02 0.0037 24.4 10.1 28 108-135 344-371 (495)
374 PRK06843 inosine 5-monophospha 46.9 1.6E+02 0.0034 24.0 10.9 72 49-135 201-283 (404)
375 cd04722 TIM_phosphate_binding 46.9 59 0.0013 22.2 5.0 55 78-135 136-197 (200)
376 PF01993 MTD: methylene-5,6,7, 46.9 37 0.00081 25.6 3.9 60 77-140 58-117 (276)
377 TIGR01428 HAD_type_II 2-haloal 46.8 98 0.0021 21.6 6.6 40 92-135 96-135 (198)
378 PRK14172 bifunctional 5,10-met 46.7 51 0.0011 25.3 4.8 61 19-94 157-217 (278)
379 PRK06801 hypothetical protein; 46.5 1.2E+02 0.0026 23.3 6.8 55 77-134 168-230 (286)
380 PRK14331 (dimethylallyl)adenos 46.4 1.6E+02 0.0034 23.9 9.4 70 78-150 37-114 (437)
381 PRK02083 imidazole glycerol ph 46.4 1.2E+02 0.0026 22.5 9.1 54 94-150 186-246 (253)
382 PRK14176 bifunctional 5,10-met 46.2 58 0.0013 25.1 5.1 60 19-93 163-222 (287)
383 PRK06543 nicotinate-nucleotide 46.1 1.2E+02 0.0025 23.4 6.7 55 94-151 180-234 (281)
384 PF01206 TusA: Sulfurtransfera 46.0 52 0.0011 19.0 3.9 33 19-51 26-58 (70)
385 cd04726 KGPDC_HPS 3-Keto-L-gul 45.8 71 0.0015 22.5 5.3 24 123-146 96-121 (202)
386 cd00291 SirA_YedF_YeeD SirA, Y 45.7 57 0.0012 18.6 4.4 33 19-51 25-57 (69)
387 COG1927 Mtd Coenzyme F420-depe 45.7 93 0.002 23.1 5.7 60 76-138 58-117 (277)
388 PF07279 DUF1442: Protein of u 45.7 1.2E+02 0.0027 22.4 8.9 65 19-101 68-137 (218)
389 TIGR00078 nadC nicotinate-nucl 45.5 1.2E+02 0.0026 23.0 6.6 54 95-151 166-219 (265)
390 PRK07414 cob(I)yrinic acid a,c 45.5 1.1E+02 0.0024 21.8 6.6 47 76-125 113-164 (178)
391 PRK08883 ribulose-phosphate 3- 45.4 1E+02 0.0022 22.6 6.2 55 79-134 129-192 (220)
392 PF01959 DHQS: 3-dehydroquinat 45.4 88 0.0019 24.9 6.0 68 79-150 97-166 (354)
393 PRK06559 nicotinate-nucleotide 45.4 1.1E+02 0.0024 23.6 6.5 54 94-150 184-237 (290)
394 TIGR03471 HpnJ hopanoid biosyn 45.3 1.6E+02 0.0034 24.2 7.8 59 77-138 67-127 (472)
395 PRK14177 bifunctional 5,10-met 45.2 46 0.001 25.6 4.4 60 19-93 158-217 (284)
396 COG0107 HisF Imidazoleglycerol 44.9 62 0.0013 24.3 4.8 55 80-134 46-100 (256)
397 TIGR00678 holB DNA polymerase 44.8 86 0.0019 21.9 5.6 70 77-150 95-166 (188)
398 COG2256 MGS1 ATPase related to 44.7 41 0.00088 27.4 4.1 40 111-150 133-174 (436)
399 PRK14607 bifunctional glutamin 44.7 39 0.00085 28.3 4.3 29 22-50 1-30 (534)
400 PRK06096 molybdenum transport 44.6 1E+02 0.0023 23.7 6.2 54 94-151 177-230 (284)
401 PRK14186 bifunctional 5,10-met 44.6 56 0.0012 25.3 4.8 59 19-92 157-215 (297)
402 TIGR00095 RNA methyltransferas 44.5 1.1E+02 0.0024 21.7 10.7 83 21-115 73-158 (189)
403 cd04949 GT1_gtfA_like This fam 44.5 84 0.0018 24.2 5.9 54 91-152 290-343 (372)
404 PRK14169 bifunctional 5,10-met 44.4 50 0.0011 25.4 4.5 62 19-95 155-216 (282)
405 PRK14180 bifunctional 5,10-met 44.4 55 0.0012 25.2 4.7 61 19-94 157-217 (282)
406 COG2518 Pcm Protein-L-isoaspar 44.4 82 0.0018 23.1 5.4 64 22-102 96-161 (209)
407 PRK14171 bifunctional 5,10-met 44.3 49 0.0011 25.5 4.4 62 19-95 158-219 (288)
408 PLN02476 O-methyltransferase 44.3 1.4E+02 0.0031 22.8 7.7 58 20-87 143-203 (278)
409 PLN02516 methylenetetrahydrofo 44.2 62 0.0013 25.1 5.0 60 19-93 166-225 (299)
410 PRK05742 nicotinate-nucleotide 44.2 1.2E+02 0.0026 23.2 6.5 52 95-150 178-229 (277)
411 PRK06849 hypothetical protein; 44.1 1.6E+02 0.0035 23.3 9.2 37 19-55 3-39 (389)
412 COG2200 Rtn c-di-GMP phosphodi 43.8 1.3E+02 0.0029 22.3 10.7 100 36-150 141-251 (256)
413 TIGR00708 cobA cob(I)alamin ad 43.8 1.2E+02 0.0025 21.6 6.3 47 76-125 95-146 (173)
414 PRK14190 bifunctional 5,10-met 43.5 73 0.0016 24.5 5.3 60 19-93 157-216 (284)
415 cd04740 DHOD_1B_like Dihydroor 43.4 60 0.0013 24.6 4.9 49 94-145 220-274 (296)
416 PRK14166 bifunctional 5,10-met 43.3 54 0.0012 25.2 4.5 62 19-95 156-217 (282)
417 PRK14961 DNA polymerase III su 43.3 87 0.0019 24.7 5.9 70 77-150 118-189 (363)
418 PRK14333 (dimethylallyl)adenos 43.3 1.8E+02 0.0039 23.7 7.8 97 28-150 18-120 (448)
419 PRK13944 protein-L-isoaspartat 43.2 31 0.00067 24.7 3.1 64 21-101 98-164 (205)
420 PRK14187 bifunctional 5,10-met 42.8 67 0.0014 24.9 4.9 61 19-94 159-219 (294)
421 PRK03512 thiamine-phosphate py 42.7 1.3E+02 0.0028 21.8 9.2 55 77-134 121-183 (211)
422 TIGR00064 ftsY signal recognit 42.6 1.5E+02 0.0032 22.5 9.7 30 20-49 100-132 (272)
423 PRK14188 bifunctional 5,10-met 42.6 1.4E+02 0.0031 23.1 6.7 34 18-51 156-189 (296)
424 TIGR01334 modD putative molybd 42.5 1.3E+02 0.0028 23.1 6.4 54 94-151 176-229 (277)
425 cd02812 PcrB_like PcrB_like pr 42.3 1.3E+02 0.0029 22.2 6.3 57 79-138 149-205 (219)
426 PF00534 Glycos_transf_1: Glyc 42.2 1E+02 0.0023 20.6 7.8 64 79-152 93-156 (172)
427 PRK14098 glycogen synthase; Pr 42.2 2E+02 0.0043 23.8 10.1 67 79-151 382-448 (489)
428 PRK14175 bifunctional 5,10-met 42.2 1.2E+02 0.0026 23.4 6.2 59 18-91 156-214 (286)
429 PRK13942 protein-L-isoaspartat 41.7 19 0.00042 26.0 1.8 65 20-101 101-167 (212)
430 PRK14182 bifunctional 5,10-met 41.6 62 0.0013 24.9 4.6 60 19-93 156-215 (282)
431 PRK05458 guanosine 5'-monophos 41.5 1.7E+02 0.0038 23.0 11.9 96 22-135 113-228 (326)
432 PRK14170 bifunctional 5,10-met 41.4 59 0.0013 25.1 4.4 60 19-93 156-215 (284)
433 PRK14325 (dimethylallyl)adenos 41.4 1.9E+02 0.0042 23.5 9.5 94 29-150 16-117 (444)
434 KOG4175 Tryptophan synthase al 41.4 71 0.0015 23.6 4.6 28 108-135 148-175 (268)
435 PF07194 P2: P2 response regul 41.3 8.1 0.00018 23.7 -0.2 65 80-150 6-71 (84)
436 TIGR03586 PseI pseudaminic aci 41.3 1.7E+02 0.0038 22.9 7.9 74 34-127 80-153 (327)
437 CHL00200 trpA tryptophan synth 41.1 1.6E+02 0.0034 22.3 9.1 101 23-138 123-232 (263)
438 TIGR00735 hisF imidazoleglycer 41.1 75 0.0016 23.7 5.0 54 80-136 46-102 (254)
439 PF13380 CoA_binding_2: CoA bi 41.1 73 0.0016 20.7 4.4 87 33-131 17-103 (116)
440 cd03804 GT1_wbaZ_like This fam 41.1 1.6E+02 0.0035 22.4 9.0 63 79-152 262-324 (351)
441 PRK14178 bifunctional 5,10-met 41.0 86 0.0019 24.1 5.3 58 18-90 150-207 (279)
442 TIGR02752 MenG_heptapren 2-hep 41.0 1.1E+02 0.0024 21.9 5.8 79 20-115 70-151 (231)
443 TIGR01855 IMP_synth_hisH imida 41.0 83 0.0018 22.4 5.0 32 23-54 1-32 (196)
444 TIGR01361 DAHP_synth_Bsub phos 41.0 1.4E+02 0.003 22.6 6.4 73 77-152 159-258 (260)
445 PRK09140 2-dehydro-3-deoxy-6-p 40.9 1.4E+02 0.003 21.7 9.2 68 47-134 108-176 (206)
446 TIGR03572 WbuZ glycosyl amidat 40.8 72 0.0016 23.2 4.8 39 94-135 186-225 (232)
447 PRK08745 ribulose-phosphate 3- 40.7 1.3E+02 0.0029 22.1 6.1 57 78-134 132-196 (223)
448 PRK14173 bifunctional 5,10-met 40.7 66 0.0014 24.8 4.6 61 19-94 154-214 (287)
449 cd05014 SIS_Kpsf KpsF-like pro 40.3 99 0.0022 19.8 7.3 74 32-122 14-88 (128)
450 PRK05567 inosine 5'-monophosph 40.3 2.1E+02 0.0046 23.6 11.6 100 21-135 241-358 (486)
451 cd02810 DHOD_DHPD_FMN Dihydroo 40.2 71 0.0015 24.1 4.8 40 94-134 230-269 (289)
452 TIGR01769 GGGP geranylgeranylg 40.2 1.4E+02 0.0031 21.7 6.3 57 77-136 146-204 (205)
453 PRK15427 colanic acid biosynth 40.0 1.9E+02 0.0042 23.0 11.3 51 93-152 318-368 (406)
454 PRK01021 lpxB lipid-A-disaccha 40.0 94 0.002 26.7 5.7 40 76-119 308-347 (608)
455 TIGR01588 citE citrate lyase, 39.9 1.7E+02 0.0037 22.4 8.5 72 77-149 23-105 (288)
456 PRK10792 bifunctional 5,10-met 39.7 69 0.0015 24.7 4.6 58 19-91 158-215 (285)
457 COG0190 FolD 5,10-methylene-te 39.7 68 0.0015 24.7 4.5 59 19-92 155-213 (283)
458 TIGR00417 speE spermidine synt 39.5 1.6E+02 0.0035 22.1 10.6 68 20-102 96-174 (270)
459 PF02593 dTMP_synthase: Thymid 39.2 1.4E+02 0.003 22.0 6.0 58 77-139 50-112 (217)
460 PRK14964 DNA polymerase III su 39.1 1.2E+02 0.0026 25.3 6.2 71 76-150 114-186 (491)
461 PF03437 BtpA: BtpA family; I 39.1 1.7E+02 0.0037 22.1 7.2 72 77-152 171-253 (254)
462 PRK13181 hisH imidazole glycer 39.1 1.1E+02 0.0023 21.8 5.3 32 23-54 2-33 (199)
463 PRK07998 gatY putative fructos 39.0 1.5E+02 0.0033 22.8 6.4 66 50-133 152-225 (283)
464 PF00218 IGPS: Indole-3-glycer 39.0 1.7E+02 0.0037 22.1 9.0 88 34-137 148-238 (254)
465 COG1411 Uncharacterized protei 38.9 1.6E+02 0.0034 21.7 6.6 58 76-136 149-209 (229)
466 PRK13141 hisH imidazole glycer 38.7 1.4E+02 0.0031 21.2 7.5 31 23-53 2-32 (205)
467 PRK00536 speE spermidine synth 38.7 1.7E+02 0.0038 22.2 10.4 22 77-102 138-159 (262)
468 TIGR03499 FlhF flagellar biosy 38.6 1.4E+02 0.0031 22.6 6.2 7 79-85 273-279 (282)
469 PF00448 SRP54: SRP54-type pro 38.6 1.4E+02 0.0031 21.3 5.9 45 31-86 43-91 (196)
470 PRK03522 rumB 23S rRNA methylu 38.5 1.8E+02 0.004 22.4 11.0 66 20-103 195-264 (315)
471 PRK11889 flhF flagellar biosyn 38.3 2.3E+02 0.0049 23.4 10.9 57 20-86 269-328 (436)
472 cd03423 SirA SirA (also known 38.1 82 0.0018 18.3 4.5 33 20-52 26-58 (69)
473 cd04731 HisF The cyclase subun 38.1 81 0.0018 23.1 4.7 41 93-136 181-222 (243)
474 PRK14965 DNA polymerase III su 38.0 1.2E+02 0.0027 25.7 6.3 71 76-150 117-189 (576)
475 cd03820 GT1_amsD_like This fam 38.0 1.6E+02 0.0034 21.5 10.3 65 79-152 253-317 (348)
476 cd03825 GT1_wcfI_like This fam 38.0 1.7E+02 0.0038 21.9 7.4 75 21-114 1-82 (365)
477 cd03421 SirA_like_N SirA_like_ 38.0 80 0.0017 18.0 5.1 31 19-49 24-54 (67)
478 COG0327 Uncharacterized conser 37.9 1.7E+02 0.0037 21.9 7.2 61 88-148 137-207 (250)
479 PRK06444 prephenate dehydrogen 37.8 93 0.002 22.4 4.9 28 21-48 1-28 (197)
480 TIGR00888 guaA_Nterm GMP synth 37.7 1.4E+02 0.0031 20.9 7.0 29 23-51 1-29 (188)
481 PLN02778 3,5-epimerase/4-reduc 37.6 1.8E+02 0.0039 22.0 7.0 32 18-49 7-38 (298)
482 PLN02979 glycolate oxidase 37.6 74 0.0016 25.5 4.6 39 94-136 212-250 (366)
483 PRK01581 speE spermidine synth 37.6 2.2E+02 0.0047 23.0 10.7 69 20-103 174-257 (374)
484 cd03332 LMO_FMN L-Lactate 2-mo 37.5 2.2E+02 0.0048 23.0 9.4 93 31-139 240-340 (383)
485 PF01784 NIF3: NIF3 (NGG1p int 37.4 1.5E+02 0.0033 21.9 6.1 58 91-148 142-209 (241)
486 COG2089 SpsE Sialic acid synth 37.2 2.1E+02 0.0046 22.7 8.0 80 35-134 94-177 (347)
487 PRK01362 putative translaldola 37.2 1.7E+02 0.0036 21.5 8.6 48 88-135 135-183 (214)
488 PRK08072 nicotinate-nucleotide 37.1 1.8E+02 0.0039 22.2 6.5 54 94-150 175-228 (277)
489 cd00429 RPE Ribulose-5-phospha 36.9 1.5E+02 0.0032 20.9 8.5 57 79-136 128-193 (211)
490 COG1908 FrhD Coenzyme F420-red 36.9 88 0.0019 21.0 4.1 31 107-137 28-60 (132)
491 PRK12656 fructose-6-phosphate 36.6 1.7E+02 0.0038 21.6 8.2 49 89-138 140-190 (222)
492 PRK04128 1-(5-phosphoribosyl)- 36.3 1.2E+02 0.0027 22.3 5.4 51 80-135 158-209 (228)
493 PF01180 DHO_dh: Dihydroorotat 36.3 81 0.0018 24.0 4.6 41 93-134 230-270 (295)
494 PRK06964 DNA polymerase III su 36.3 1.3E+02 0.0028 23.8 5.7 70 76-149 130-201 (342)
495 PLN02493 probable peroxisomal 36.2 80 0.0017 25.3 4.6 40 94-137 213-252 (367)
496 PRK07940 DNA polymerase III su 36.0 1.5E+02 0.0032 24.0 6.1 70 76-149 115-186 (394)
497 PF02572 CobA_CobO_BtuR: ATP:c 36.0 1.6E+02 0.0034 20.9 6.2 47 76-125 94-145 (172)
498 PRK14723 flhF flagellar biosyn 36.0 3.2E+02 0.0069 24.4 9.5 53 21-86 216-271 (767)
499 PRK07107 inosine 5-monophospha 35.9 2.6E+02 0.0057 23.4 8.2 55 77-135 253-310 (502)
500 CHL00197 carA carbamoyl-phosph 35.8 2.3E+02 0.0051 22.8 7.7 79 20-116 192-271 (382)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.91 E-value=4.7e-23 Score=151.80 Aligned_cols=114 Identities=23% Similarity=0.381 Sum_probs=104.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++||+|||++.....+...|+..||.+..+.++.+++..+. .. ||+|++|+.||+++|+++++++
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--------------~~-~dlviLD~~lP~~dG~~~~~~i 65 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR--------------EQ-PDLVLLDLMLPDLDGLELCRRL 65 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------cC-CCEEEEECCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999883 45 9999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
|+. ....+|||++|+..+......+++.|||||++|||++.||...+.-
T Consensus 66 R~~-~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a 114 (229)
T COG0745 66 RAK-KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRA 114 (229)
T ss_pred Hhh-cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHH
Confidence 965 4467899999999999999999999999999999999999865554
No 2
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.87 E-value=9.7e-21 Score=123.95 Aligned_cols=111 Identities=33% Similarity=0.586 Sum_probs=103.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIK 101 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr 101 (153)
|||+|+++..+..++..|+..|+ .+..+.+..+++..+. .+.||++++|+.+++.+|.++++.|+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~--------------~~~~d~iiid~~~~~~~~~~~~~~i~ 66 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK--------------KHPPDLIIIDLELPDGDGLELLEQIR 66 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH--------------HSTESEEEEESSSSSSBHHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc--------------ccCceEEEEEeeeccccccccccccc
Confidence 79999999999999999999999 9999999999999884 35699999999999999999999999
Q ss_pred hccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 102 ESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
+.. +.+|+|+++...+.....++++.|+++|+.||++.+++.+.++
T Consensus 67 ~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 67 QIN--PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHT--TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ccc--ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 866 6899999999999999999999999999999999999998764
No 3
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-20 Score=149.71 Aligned_cols=117 Identities=33% Similarity=0.470 Sum_probs=108.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||||||+...+..+...|+..||.|..+.++.+++..+. ...||+|++|+.||+++|+++++.
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~--------------~~~~~lvl~Di~mp~~~Gl~ll~~ 69 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS--------------ESPFDLVLLDIRMPGMDGLELLKE 69 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--------------cCCCCEEEEecCCCCCchHHHHHH
Confidence 456999999999999999999999999999999999999984 336999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++.. +.+|+|++|++.+.+.+.+|++.||.||+.||++++++...+.+.+
T Consensus 70 i~~~~--~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral 120 (464)
T COG2204 70 IKSRD--PDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERAL 120 (464)
T ss_pred HHhhC--CCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHH
Confidence 99865 7899999999999999999999999999999999999998888753
No 4
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-20 Score=129.88 Aligned_cols=117 Identities=23% Similarity=0.333 Sum_probs=106.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+.|.|+|||...++.+..+|+..||.+..+.++.+.+... ....+-++++|+.||+++|+++.+
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~--------------~~~~pGclllDvrMPg~sGlelq~ 68 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA--------------PLDRPGCLLLDVRMPGMSGLELQD 68 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc--------------cCCCCCeEEEecCCCCCchHHHHH
Confidence 457799999999999999999999999999999999887764 235688999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+|.+.. ...|||++|+..+.....+|++.||.|||.||++.+.+.+.+.+.
T Consensus 69 ~L~~~~--~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~A 119 (202)
T COG4566 69 RLAERG--IRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERA 119 (202)
T ss_pred HHHhcC--CCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHH
Confidence 999866 689999999999999999999999999999999999999887764
No 5
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-20 Score=147.62 Aligned_cols=115 Identities=32% Similarity=0.507 Sum_probs=105.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHh--cCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKN--SACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~--~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+||||||.+..++.|+.++.. .|++ |..+.+|.+|++.+. ..+||++|+|+.||.++|+++++
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~--------------e~~pDiviTDI~MP~mdGLdLI~ 68 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ--------------ETQPDIVITDINMPGMDGLDLIK 68 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH--------------hcCCCEEEEecCCCCCcHHHHHH
Confidence 699999999999999999885 4665 568999999999983 56899999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+++.. |.+.+|++|+.++-+.+.+|++.|+.+||.||++.++|.+++.++.
T Consensus 69 ~ike~~--p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 69 AIKEQS--PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred HHHHhC--CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHH
Confidence 999854 7899999999999999999999999999999999999999888753
No 6
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-19 Score=127.79 Aligned_cols=114 Identities=24% Similarity=0.327 Sum_probs=101.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS-ACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.++|||+|++...+.-+.++++. ||. |..+.+..+|...+. ..+||+|++|+.||+.+|++++.
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~--------------~~~pDLILLDiYmPd~~Gi~lL~ 66 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE--------------EFKPDLILLDIYMPDGNGIELLP 66 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH--------------hhCCCEEEEeeccCCCccHHHHH
Confidence 36999999999999999999975 665 568999999998883 45689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+|+.. ..+-||++|+..+.+-+.++++.|+.|||.|||..+.+.+.+.+
T Consensus 67 ~ir~~~--~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~ 116 (224)
T COG4565 67 ELRSQH--YPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTR 116 (224)
T ss_pred HHHhcC--CCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHH
Confidence 999865 47788999998899999999999999999999999999988765
No 7
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=6.1e-19 Score=134.39 Aligned_cols=117 Identities=31% Similarity=0.468 Sum_probs=106.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
....++|++||++..+..++.+|+..+|.+..++++.++++... +.++|++++|+.||.|+|.+++
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~--------------~~~~dlvllD~~mp~mdg~ev~ 77 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ--------------EEPPDLVLLDVRMPEMDGAEVL 77 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc--------------ccCCceEEeeccCCCccHHHHH
Confidence 35578999999999999999999999999999999999988773 4569999999999999999999
Q ss_pred HHHHh-ccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 98 KKIKE-SSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 98 ~~lr~-~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
++|+. .+...++|++++|+..+.+...+++..|+++|+.||+++.++....
T Consensus 78 ~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 78 NKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARV 129 (360)
T ss_pred HHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHH
Confidence 99998 5555678999999999999999999999999999999999988655
No 8
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.80 E-value=7.2e-19 Score=148.77 Aligned_cols=121 Identities=29% Similarity=0.529 Sum_probs=111.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+..+||++||+...+++...+|+..|.++..+.++.+|+..+. ..+.||+||||++||.+||+++.
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-------------~~~~y~~ifmD~qMP~mDG~e~~ 730 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-------------PPHSYDVIFMDLQMPEMDGYEAT 730 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-------------CCCcccEEEEEcCCcccchHHHH
Confidence 35689999999999999999999999999999999999999984 35789999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++|+... .++|||++|+...++...+|++.|.|+||.||++.+.+...+.+.+
T Consensus 731 ~~irk~~~-~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 731 REIRKKER-WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred HHHHHhhc-CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 99998654 7899999999999999999999999999999999999998887754
No 9
>PLN03029 type-a response regulator protein; Provisional
Probab=99.79 E-value=1.1e-17 Score=123.00 Aligned_cols=134 Identities=55% Similarity=0.944 Sum_probs=108.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHh------hhhcccCCCcccEEEEeCCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQ------QNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~------~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
....+||++||+...+..+..+|+..||.+..+.++.+++..+........ ...-......+|+||+|+.||++
T Consensus 6 ~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~ 85 (222)
T PLN03029 6 ESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGM 85 (222)
T ss_pred CCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCC
Confidence 356889999999999999999999999999999999999988742110000 00000012357899999999999
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+|+++++.+++......+|+|++++........++++.|+++|+.||++..+|..+..++
T Consensus 86 ~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 86 TGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred CHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHH
Confidence 999999999976544578999999988888889999999999999999999998877664
No 10
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.77 E-value=2.3e-17 Score=120.37 Aligned_cols=114 Identities=31% Similarity=0.496 Sum_probs=102.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcC-cE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSA-CK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~-~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
+|+|+||++..+..++.+|+..+ ++ +..+.++.+++..+ ...+||++++|+.||+++|++++++
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~--------------~~~~pdvvl~Dl~mP~~~G~e~~~~ 67 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA--------------RELKPDVVLLDLSMPGMDGLEALKQ 67 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh--------------hhcCCCEEEEcCCCCCCChHHHHHH
Confidence 69999999999999999998765 66 45677799999876 3567999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
|++.. ++++++++|...+.....++++.|+++|+.|..+++++.+.+...
T Consensus 68 l~~~~--p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v 117 (211)
T COG2197 68 LRARG--PDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAV 117 (211)
T ss_pred HHHHC--CCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 99654 688999999999999999999999999999999999999888765
No 11
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.77 E-value=4.5e-17 Score=109.02 Aligned_cols=118 Identities=29% Similarity=0.489 Sum_probs=100.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHH-HHHHHhchhhhHHhhhhcccCCC-cccEEEEeCCCCCCCHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGM-RALEFLGLVDEQEQQNNLNSNGT-KVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~-~~dlii~D~~~~~~~g~~ 95 (153)
.+..+||++||++..+..++..|...|+.+..+.++. +++..+. .. .||++++|+.||.++|++
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~--------------~~~~~dlii~D~~mp~~~G~~ 68 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR--------------ELPQPDLILLDINMPGMDGIE 68 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH--------------hCCCCCEEEEeCCCCCCCHHH
Confidence 3568899999999999999999999999999999995 9999883 34 499999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhH-HHHHHhhh
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSD-VKKLTGHL 151 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~-l~~~~~~~ 151 (153)
+++++++. .+.+|++++|+.........+++.|+++|+.||+...+ +...+.+.
T Consensus 69 ~~~~l~~~--~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~ 123 (130)
T COG0784 69 LLRRLRAR--GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRL 123 (130)
T ss_pred HHHHHHhC--CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHH
Confidence 99999986 24678888888777766677899999999999977776 66665543
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.77 E-value=3.2e-17 Score=120.37 Aligned_cols=117 Identities=17% Similarity=0.267 Sum_probs=102.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN-SAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~-~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..+...|+. .++ .+..+.++.+++..+. ...||++++|+.||+++|+++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~--------------~~~pdlvllD~~mp~~~gle~ 68 (225)
T PRK10046 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE--------------RFKPGLILLDNYLPDGRGINL 68 (225)
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH--------------hcCCCEEEEeCCCCCCcHHHH
Confidence 347899999999999999999986 467 4778999999998873 457999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.+++.. +..++|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~~~l~~~~--~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 69 LHELVQAH--YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred HHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 99998743 467899999988888899999999999999999999998877653
No 13
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.76 E-value=2e-17 Score=130.49 Aligned_cols=118 Identities=25% Similarity=0.460 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
...+||++||+...+..++++|...|+.+..+.++.+|+..+. +.+||+||.|+.||+++|+++++
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~--------------e~~~dlil~d~~mp~~dg~el~~ 196 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLA--------------ELPPDLVLLDANMPDMDGLELCT 196 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHh--------------cCCCcEEEEecCCCccCHHHHHH
Confidence 4578999999999999999999999999999999999999883 45899999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
++|+......+|+|++++..+.....+|++.|++||+.||+++.++..-+.+
T Consensus 197 ~lr~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~ 248 (435)
T COG3706 197 RLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRR 248 (435)
T ss_pred HHhcccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHH
Confidence 9998776678999999999999999999999999999999998888755544
No 14
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.75 E-value=7.4e-17 Score=138.45 Aligned_cols=119 Identities=24% Similarity=0.409 Sum_probs=108.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
...+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~--------------~~~~dlil~D~~mp~~~g~~~~~ 731 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAK--------------QRPFDLILMDIQMPGMDGIRACE 731 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCcHHHHHH
Confidence 3578999999999999999999999999999999999999873 46799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.||+....+.+|+|++|+........++++.|+++|+.||++..++...+.+.
T Consensus 732 ~lr~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 784 (919)
T PRK11107 732 LIRQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRY 784 (919)
T ss_pred HHHhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHH
Confidence 99975444678999999998899999999999999999999999999888765
No 15
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.74 E-value=1.5e-16 Score=116.09 Aligned_cols=118 Identities=24% Similarity=0.418 Sum_probs=104.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||++||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.+++.+|.++++.
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~g~~~~~~ 67 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--------------EPWPDLILLDWMLPGGSGIQFIKH 67 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------ccCCCEEEEeCCCCCCCHHHHHHH
Confidence 367999999999999999999988999999999999988772 456999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++....+.+|+|+++...+.....++++.|+++|+.||++..++...+..+
T Consensus 68 l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~ 119 (229)
T PRK10161 68 LKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 (229)
T ss_pred HHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 9875433578999999988888889999999999999999999998776654
No 16
>PRK11173 two-component response regulator; Provisional
Probab=99.74 E-value=1.3e-16 Score=117.29 Aligned_cols=115 Identities=26% Similarity=0.493 Sum_probs=102.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||+++|++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.||+++|+++++.
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~g~~~~~~ 68 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--------------ENDINLVIMDINLPGKNGLLLARE 68 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--------------hCCCCEEEEcCCCCCCCHHHHHHH
Confidence 468999999999999999999999999999999999988773 356999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++. +.+|+|++++..+......+++.|+++|+.||++..++...+..+
T Consensus 69 lr~~---~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~ 117 (237)
T PRK11173 69 LREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 (237)
T ss_pred HhcC---CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 9864 368999999988888888999999999999999999997655543
No 17
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.74 E-value=1.4e-16 Score=115.79 Aligned_cols=115 Identities=23% Similarity=0.364 Sum_probs=103.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++||++++++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.+|+++|+++++.+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~--------------~~~~dlvild~~l~~~~g~~l~~~l 66 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN--------------EHLPDIAIVDLGLPDEDGLSLIRRW 66 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------hCCCCEEEEECCCCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999988762 4569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|++++..+.....++++.|+++|+.||++..++...+..+
T Consensus 67 r~~~--~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~ 115 (223)
T PRK10816 67 RSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 (223)
T ss_pred HhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Confidence 8754 578999999998888889999999999999999999998766553
No 18
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.74 E-value=1.8e-16 Score=115.46 Aligned_cols=115 Identities=19% Similarity=0.374 Sum_probs=102.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++||++++++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.+|+.+|+++++.+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~~~~~~g~~~~~~l 66 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM--------------TGDYDLIILDIMLPDVNGWDIVRML 66 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------hCCCCEEEEECCCCCCCHHHHHHHH
Confidence 37999999999999999999988999999999999988662 3569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|+++...+.....++++.|+++|+.||++..++...+..+
T Consensus 67 r~~~--~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 115 (227)
T PRK09836 67 RSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTL 115 (227)
T ss_pred HhcC--CCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 9754 578999999988889899999999999999999999998766553
No 19
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.74 E-value=2.4e-16 Score=114.09 Aligned_cols=118 Identities=21% Similarity=0.452 Sum_probs=103.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||++||++..+..+...|+..++.+..+.+..+++..+. ...||++++|+.+|+.+|+++++.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--------------~~~~d~vi~d~~~~~~~g~~~~~~ 67 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN--------------ERGPDLILLDWMLPGTSGIELCRR 67 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH--------------hcCCCEEEEECCCCCCcHHHHHHH
Confidence 367999999999999999999988999989999999988762 356999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.....+.+|+|++++..+.....++++.|+++|+.||++.+++...+..+
T Consensus 68 l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 119 (226)
T TIGR02154 68 LRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAV 119 (226)
T ss_pred HHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 9875433578999999988888888999999999999999999998777654
No 20
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.74 E-value=2.2e-16 Score=114.78 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=101.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+||++||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.+
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~g~~~~~~l 67 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA--------------TRKPDLIILDLGLPDGDGIEFIRDL 67 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999989999999999999887662 3569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++. +.+|+|++++..+.....++++.|+++|+.||++..++...+..+
T Consensus 68 r~~---~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~ 115 (225)
T PRK10529 68 RQW---SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 (225)
T ss_pred HcC---CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 863 468999999988888889999999999999999999998776653
No 21
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-17 Score=122.94 Aligned_cols=113 Identities=22% Similarity=0.442 Sum_probs=101.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++++|+||+......+..+|++.|..+..++...+++.++. ..+||+||+|+.||+++|.+|++++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le--------------~~kpDLifldI~mp~~ngiefaeQv 66 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE--------------VFKPDLIFLDIVMPYMNGIEFAEQV 66 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH--------------hcCCCEEEEEeecCCccHHHHHHHH
Confidence 47999999999999999999999988899999999999983 5789999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
|... +.+|||++|++. +.....+....++|+.||++++.|-+++.+.
T Consensus 67 r~i~--~~v~iifIssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~ 113 (361)
T COG3947 67 RDIE--SAVPIIFISSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRR 113 (361)
T ss_pred HHhh--ccCcEEEEecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHH
Confidence 9865 689999999864 4555677777899999999999999888875
No 22
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.73 E-value=1.8e-16 Score=136.65 Aligned_cols=117 Identities=26% Similarity=0.506 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
...+||++||++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~--------------~~~~DlVl~D~~mP~mdG~el~~ 865 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--------------KNHIDIVLTDVNMPNMDGYRLTQ 865 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--------------hCCCCEEEEcCCCCCCCHHHHHH
Confidence 4468999999999999999999999999999999999999883 45799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+|+.. +.+|||++|+....+...++++.|+++|+.||++.+++.+.+.+.
T Consensus 866 ~ir~~~--~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~ 916 (924)
T PRK10841 866 RLRQLG--LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVY 916 (924)
T ss_pred HHHhcC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 999864 578999999998888899999999999999999999999888764
No 23
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.73 E-value=2.4e-16 Score=114.80 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=101.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc-E-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC---CCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC-K-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG---MTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~-~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~---~~g 93 (153)
++.+|+|+||++..+..++..|+..++ . +..+.++.+++..+. ...||++++|+.+|+ .+|
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~--------------~~~~DlvllD~~l~~~~~~~g 67 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP--------------KLDAHVLITDLSMPGDKYGDG 67 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH--------------hCCCCEEEEeCcCCCCCCCCH
Confidence 347899999999999999999987554 3 667899999988762 356999999999999 499
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++++++++.. +.+|+|+++...+.....++++.|+++|+.||.+++++.+.+..+
T Consensus 68 ~~~~~~l~~~~--~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v 123 (216)
T PRK10840 68 ITLIKYIKRHF--PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAAL 123 (216)
T ss_pred HHHHHHHHHHC--CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHH
Confidence 99999998753 678999999988888889999999999999999999999887764
No 24
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.73 E-value=3.9e-16 Score=112.78 Aligned_cols=115 Identities=19% Similarity=0.311 Sum_probs=102.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++|+++||++..+..+...|+..|+.+..+.+..+++..+. ...||++++|+.+|+++|+++++.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--------------~~~~d~illd~~~~~~~g~~~~~~l 66 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE--------------SGHYSLVVLDLGLPDEDGLHLLRRW 66 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--------------hCCCCEEEEECCCCCCCHHHHHHHH
Confidence 36999999999999999999988999989999999888762 3568999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+... +.+|+|+++...+.....++++.|+++|+.||++.+++...+..+
T Consensus 67 ~~~~--~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 115 (222)
T PRK10643 67 RQKK--YTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRAL 115 (222)
T ss_pred HhcC--CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 8754 578999999988888889999999999999999999998766653
No 25
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.72 E-value=5e-16 Score=114.05 Aligned_cols=116 Identities=21% Similarity=0.397 Sum_probs=103.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||++++++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.+|+++|+++++.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~g~~~~~~ 70 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT--------------RESFHLMVLDLMLPGEDGLSICRR 70 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 467999999999999999999999999999999999888762 457999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++++..+......+++.|+++|+.||++.+++...+..+
T Consensus 71 lr~~~--~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~ 120 (239)
T PRK09468 71 LRSQN--NPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAV 120 (239)
T ss_pred HHhcC--CCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 99753 578999999988888888999999999999999999998776654
No 26
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.72 E-value=4.6e-16 Score=112.32 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=101.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++|+++||++..+..+...|+..++.+..+.+..+++..+. ...||++++|+.+++.+|.++++.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~g~~~~~~i 66 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY--------------SAPYDAVILDLTLPGMDGRDILREW 66 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------hCCCCEEEEECCCCCCCHHHHHHHH
Confidence 36999999999999999999988999989999998888762 3568999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|+++...+.....++++.|+++|+.||++..++...+..+
T Consensus 67 ~~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 115 (219)
T PRK10336 67 REKG--QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL 115 (219)
T ss_pred HhcC--CCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHH
Confidence 9743 578999999988888888999999999999999999998766553
No 27
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.72 E-value=5.4e-16 Score=112.43 Aligned_cols=114 Identities=23% Similarity=0.383 Sum_probs=101.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||++++++.....+...|...|+.+..+.++.+++..+. ...||++++|+.+|+++|.++++.
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~g~~~~~~ 67 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ--------------NQHVDLILLDINLPGEDGLMLTRE 67 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 357999999999999999999999999999999999988762 356999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
+++. +.+|+|++++..+.....++++.|+++|+.||++..++...+..
T Consensus 68 lr~~---~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~ 115 (221)
T PRK10766 68 LRSR---STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKN 115 (221)
T ss_pred HHhC---CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHH
Confidence 9874 36899999998888888899999999999999999999766554
No 28
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.72 E-value=5.8e-16 Score=112.32 Aligned_cols=116 Identities=25% Similarity=0.387 Sum_probs=102.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
.++||++||++..+..+...|...++.+..+.+..+++..+. ...||++++|+.+|+.+|+++++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvl~d~~~~~~~g~~~~~~ 68 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR--------------QQPPDLVILDVGLPDISGFELCRQ 68 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 468999999999999999999988999988999998887762 456999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|+++...+......+++.|+++|+.||++..++...+...
T Consensus 69 l~~~~--~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~ 118 (228)
T PRK11083 69 LLAFH--PALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTI 118 (228)
T ss_pred HHhhC--CCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHH
Confidence 99754 578999999988888888999999999999999999998776653
No 29
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.72 E-value=2.7e-16 Score=135.08 Aligned_cols=118 Identities=25% Similarity=0.444 Sum_probs=106.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
.++|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~--------------~~~~dlil~D~~mp~~~G~~~~~~ 755 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR--------------QHRFDLVLMDIRMPGLDGLETTQL 755 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 468999999999999999999999999999999999998873 467999999999999999999999
Q ss_pred HHhcc--CCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESS--VMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~--~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+|+.. ..+.+|||++|+..+.....++++.|+++|+.||++..+|...+.++
T Consensus 756 ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 809 (921)
T PRK15347 756 WRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELA 809 (921)
T ss_pred HHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 98632 22578999999998888899999999999999999999999887653
No 30
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.71 E-value=3.8e-16 Score=134.26 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=106.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...+||+||+|+.||+++|+++++
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-------------~~~~~Dlvl~D~~mp~~~G~~~~~ 746 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQ-------------NSEPFAAALVDFDLPDYDGITLAR 746 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHH-------------cCCCCCEEEEeCCCCCCCHHHHHH
Confidence 3568999999999999999999999999999999999998773 234689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|++|.........++++.|+++|+.||++.+++...+.++
T Consensus 747 ~lr~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 797 (914)
T PRK11466 747 QLAQQY--PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHY 797 (914)
T ss_pred HHHhhC--CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHH
Confidence 999754 689999999998888888999999999999999999999888775
No 31
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.71 E-value=4.8e-16 Score=105.55 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=104.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
...+||+|||..+...+...++..||.+..+.+..+++..+. ...|...++|+.+.+.+|+.+++.
T Consensus 9 d~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar--------------t~~PayAvvDlkL~~gsGL~~i~~ 74 (182)
T COG4567 9 DKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR--------------TAPPAYAVVDLKLGDGSGLAVIEA 74 (182)
T ss_pred CceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh--------------cCCCceEEEEeeecCCCchHHHHH
Confidence 347999999999999999999999999999999999999883 567999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
|++.. +...+|++|++.+-.-..+|.+.|+++||.||-+.+.+...+.
T Consensus 75 lr~~~--~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 75 LRERR--ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred HHhcC--CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 99865 6889999999999999999999999999999999999876654
No 32
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.71 E-value=3.8e-16 Score=134.84 Aligned_cols=120 Identities=25% Similarity=0.406 Sum_probs=107.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvl~D~~mp~~~g~~~~~ 766 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH--------------QHAFDLALLDINLPDGDGVTLLQ 766 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--------------CCCCCEEEECCCCCCCCHHHHHH
Confidence 3457999999999999999999999999999999999999883 46799999999999999999999
Q ss_pred HHHhccCCCC-CcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKE-VPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~-~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+++...... +|+|++|+.........+++.|+++|+.||++..+|...+.+++
T Consensus 767 ~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 821 (968)
T TIGR02956 767 QLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVIL 821 (968)
T ss_pred HHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 9997543223 89999999988998999999999999999999999999887753
No 33
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.70 E-value=1.1e-15 Score=111.15 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=100.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHHHHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYELLKK 99 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~~~~~ 99 (153)
+||++||+...+..+...|+..|+.+..+.++.+++..+. ...||++++|+.+|+ .+|+++++.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~~~g~~~~~~ 67 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR--------------QRLPDLAIIDIGLGEEIDGGFMLCQD 67 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH--------------hCCCCEEEEECCCCCCCCCHHHHHHH
Confidence 6999999999999999999988999988999999888762 356999999999997 489999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++... +.+|+|++++..+......+++.|+++|+.||++..++...+..+
T Consensus 68 i~~~~--~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 117 (227)
T TIGR03787 68 LRSLS--ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITAL 117 (227)
T ss_pred HHhcC--CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 98753 568999999988888889999999999999999999998766553
No 34
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.70 E-value=1.3e-15 Score=110.90 Aligned_cols=113 Identities=24% Similarity=0.424 Sum_probs=100.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+||++||++..+..+...|+..|+.+..+.++.+++..+. ..||++++|+.+|+++|+++++.+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~---------------~~~d~vl~d~~~~~~~g~~~~~~l 66 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---------------DSIDLLLLDVMMPKKNGIDTLKEL 66 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh---------------cCCCEEEEeCCCCCCcHHHHHHHH
Confidence 37999999999999999999988999999999999988662 358999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. .+|+|+++...+.....++++.|+++|+.||++.+++...+..+
T Consensus 67 ~~~~---~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 114 (232)
T PRK10955 67 RQTH---QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 (232)
T ss_pred HhcC---CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHH
Confidence 9754 38999999988888888999999999999999999998766653
No 35
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.70 E-value=1.2e-15 Score=112.48 Aligned_cols=113 Identities=24% Similarity=0.389 Sum_probs=98.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIK 101 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr 101 (153)
+||+++|++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.+|+.+|+++++.++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvi~d~~l~~~~g~~l~~~i~ 68 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA--------------SETVDVVVVDLNLGREDGLEIVRSLA 68 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--------------hCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 7999999999999999999989999999999999988762 45799999999999999999999998
Q ss_pred hccCCCCCcEEEEeCC-CChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 102 ESSVMKEVPVVVVSSE-NIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~-~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+. ..+|+|++++. ........+++.|+++|+.||++..++...+..+
T Consensus 69 ~~---~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~ 116 (241)
T PRK13856 69 TK---SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVA 116 (241)
T ss_pred hc---CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHH
Confidence 64 36899999974 3556677899999999999999999998766543
No 36
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.70 E-value=1.4e-15 Score=111.77 Aligned_cols=113 Identities=21% Similarity=0.287 Sum_probs=100.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+||+++|++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.+|+.+|+++++.+
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~--------------~~~~dlvild~~l~~~~g~~~~~~i 67 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL--------------REQPDLVLLDIMLPGKDGMTICRDL 67 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh--------------hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999988773 4569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
++. ...|+|+++...+.....++++.|+++|+.||++..++...+..
T Consensus 68 r~~---~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~ 114 (240)
T PRK10701 68 RPK---WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRL 114 (240)
T ss_pred Hhc---CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 973 35799999988888878899999999999999999999876654
No 37
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.70 E-value=1.7e-15 Score=109.69 Aligned_cols=114 Identities=20% Similarity=0.387 Sum_probs=101.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++||++++++..+..+...|+..|+.+..+.+..+++..+. ...||++++|+.+|+++|+++++.+
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~--------------~~~~dlvi~d~~~~~~~g~~~~~~l 66 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL--------------KDDYALIILDIMLPGMDGWQILQTL 66 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------cCCCCEEEEECCCCCCCHHHHHHHH
Confidence 36999999999999999999988999999999999988762 4569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.. +.+|+|+++...+.....++++.|+++|+.||++..++...+...
T Consensus 67 ~~~---~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~ 114 (223)
T PRK11517 67 RTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114 (223)
T ss_pred HcC---CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 864 368999999988888899999999999999999999998776653
No 38
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.69 E-value=2.3e-15 Score=110.17 Aligned_cols=116 Identities=28% Similarity=0.471 Sum_probs=102.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+.++|+++||++.....+...|...++.+..+.+..+++..+. ...||++++|+.+|+.+|+++++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~--------------~~~~d~illd~~~~~~~g~~~~~ 70 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR--------------KEQPDLVILDVMMPKLDGYGVCQ 70 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 4568999999999999999999988999988899999888762 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++.. +.+|+|++++..+.....++++.|+++|+.||++..++...+..+
T Consensus 71 ~l~~~---~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~ 120 (240)
T CHL00148 71 EIRKE---SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSV 120 (240)
T ss_pred HHHhc---CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 99863 478999999988888888999999999999999999998776553
No 39
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.69 E-value=1.9e-15 Score=108.20 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=101.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
++|+++|+++..+..+...|+..|+.+. .+.+..+++..+. ...||++++|+.+|+.+|.++++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--------------~~~~dlvi~d~~~~~~~g~~~~~~ 66 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE--------------TLKPDIVIIDVDIPGVNGIQVLET 66 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH--------------ccCCCEEEEeCCCCCCCHHHHHHH
Confidence 4799999999999999999998899886 6899999988773 456999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++... +..|+|++++..+.....++++.|+++|+.||++.+++...+...
T Consensus 67 l~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 116 (204)
T PRK09958 67 LRKRQ--YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 (204)
T ss_pred HHhhC--CCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHH
Confidence 98753 467899999988888888999999999999999999999887764
No 40
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.69 E-value=1.5e-15 Score=112.32 Aligned_cols=116 Identities=23% Similarity=0.327 Sum_probs=99.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-cCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKN-SACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~-~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+|||+||++..+..+..+|.. .++. +..+.++.+++..+.. ....||++|+|+.||+++|+++++
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~DlvilD~~~p~~~G~eli~ 69 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN------------SDTPIDLILLDIYMQQENGLDLLP 69 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh------------cCCCCCEEEEecCCCCCCcHHHHH
Confidence 4799999999999999999976 3565 4477888888776621 124689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+++.. +.+|+|++++..+.....++++.|+++|+.||++.+++.+.+.+
T Consensus 70 ~l~~~~--~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~ 119 (239)
T PRK10430 70 VLHEAG--CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 (239)
T ss_pred HHHhhC--CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 998754 57899999999888889999999999999999999999887764
No 41
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.69 E-value=1.2e-15 Score=129.41 Aligned_cols=119 Identities=22% Similarity=0.393 Sum_probs=102.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~--------------~~~~Dlvl~D~~mp~~~G~e~~~ 589 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD--------------PDEYDLVLLDIQLPDMTGLDIAR 589 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh--------------cCCCCEEEEcCCCCCCCHHHHHH
Confidence 3478999999999999999999999999999999999999873 45799999999999999999999
Q ss_pred HHHhccCCCC-CcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKE-VPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~-~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.||+....+. .|+|++++.... ...++++.|+++|+.||++..++...+.+++
T Consensus 590 ~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 643 (779)
T PRK11091 590 ELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFW 643 (779)
T ss_pred HHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHh
Confidence 9997543234 488888886544 4578899999999999999999999887753
No 42
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.69 E-value=2e-15 Score=112.89 Aligned_cols=118 Identities=22% Similarity=0.343 Sum_probs=101.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS-ACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+||++||++..+..+...|... ++. +..+.++.+++..+. ...||+|++|+.||+++|++++
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~--------------~~~~DlvllD~~mp~~dG~~~l 67 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK--------------EQQPDVVVLDIIMPHLDGIGVL 67 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHH
Confidence 468999999999999999999853 444 447899999998873 4569999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++......+|+|++++........++++.|+++|+.||++.+++...+.++
T Consensus 68 ~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~ 121 (262)
T TIGR02875 68 EKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQL 121 (262)
T ss_pred HHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 999975533347899999988888889999999999999999999998877765
No 43
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.68 E-value=2.7e-15 Score=108.12 Aligned_cols=113 Identities=26% Similarity=0.445 Sum_probs=100.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHh
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKE 102 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~ 102 (153)
|+++|+++..+..+...|...|+.+..+.+..+++..+. ...||++++|+.+|+.+|.++++.++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvl~d~~~~~~~g~~~~~~l~~ 66 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL--------------KDDYDLIILDVMLPGMDGWQILQTLRR 66 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 589999999999999999988999999999999988762 456999999999999999999999986
Q ss_pred ccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 103 SSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 103 ~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.. +.+|+|+++...+.....++++.|+++|+.||++..++...+..+
T Consensus 67 ~~--~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 113 (218)
T TIGR01387 67 SG--KQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTL 113 (218)
T ss_pred cC--CCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Confidence 53 578999999988888889999999999999999999998776653
No 44
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.67 E-value=2.4e-15 Score=121.22 Aligned_cols=116 Identities=28% Similarity=0.414 Sum_probs=104.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~--------------~~~~DlvllD~~lp~~dgl~~l~~ 68 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA--------------SKTPDVLLSDIRMPGMDGLALLKQ 68 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--------------cCCCCEEEECCCCCCCCHHHHHHH
Confidence 368999999999999999999999999999999999998873 457999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++... +.+|+|++++..+......+++.|+++|+.||++..++...+.+.
T Consensus 69 ir~~~--~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 118 (469)
T PRK10923 69 IKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 (469)
T ss_pred HHhhC--CCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHH
Confidence 98754 578999999988888889999999999999999999998877654
No 45
>PRK15115 response regulator GlrR; Provisional
Probab=99.67 E-value=2.3e-15 Score=120.51 Aligned_cols=116 Identities=29% Similarity=0.433 Sum_probs=104.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+...++..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~--------------~~~~dlvilD~~lp~~~g~~ll~~ 70 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN--------------REKVDLVISDLRMDEMDGMQLFAE 70 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------cCCCCEEEEcCCCCCCCHHHHHHH
Confidence 478999999999999999999999999999999999988773 456999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++++..+.....++++.|+++|+.||++..++...+.++
T Consensus 71 l~~~~--~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~ 120 (444)
T PRK15115 71 IQKVQ--PGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDA 120 (444)
T ss_pred HHhcC--CCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHH
Confidence 98753 678999999988888889999999999999999999998877654
No 46
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.67 E-value=3.4e-15 Score=119.86 Aligned_cols=117 Identities=22% Similarity=0.369 Sum_probs=105.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+...|+..|+.+..+.+..+++..+. ...||+|++|+.||+++|+++++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~dlillD~~~p~~~g~~ll~ 68 (457)
T PRK11361 3 AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA--------------DIHPDVVLMDIRMPEMDGIKALK 68 (457)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHH
Confidence 3568999999999999999999999999999999999988773 45699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++... +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.+.
T Consensus 69 ~i~~~~--~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~ 119 (457)
T PRK11361 69 EMRSHE--TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRA 119 (457)
T ss_pred HHHhcC--CCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhh
Confidence 998754 578999999988888899999999999999999999998877654
No 47
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.67 E-value=6.5e-15 Score=105.54 Aligned_cols=117 Identities=25% Similarity=0.401 Sum_probs=100.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|+++++++..+..+...+... ++.+. .+.++.+++..+. ...||++++|+.+|+.+|.++
T Consensus 2 ~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~dlvild~~l~~~~g~~~ 67 (210)
T PRK09935 2 KPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR--------------TRPVDLIIMDIDLPGTDGFTF 67 (210)
T ss_pred CcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHH
Confidence 4567999999999999999999865 56664 6788888877662 356999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.++... +.+|+|++++..+.....++++.|+++|+.||++.+++...+..+
T Consensus 68 ~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 120 (210)
T PRK09935 68 LKRIKQIQ--STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI 120 (210)
T ss_pred HHHHHHhC--CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 99999743 578999999988888888999999999999999999999877664
No 48
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.67 E-value=1.6e-15 Score=120.47 Aligned_cols=117 Identities=20% Similarity=0.342 Sum_probs=102.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
...+||++||++..+..+...+.. .+.+..+.++.+++..+ ...+||+|++|+.||.++|+++++
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~--------------~~~~~d~vi~d~~~p~~~g~~l~~ 218 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNA--------------AETNYDLVIVSANFENYDPLRLCS 218 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhc--------------ccCCCCEEEecCCCCCchHhHHHH
Confidence 457899999999999999999965 46677889999998876 346799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+++....+.+|+|++|+..+.....++++.|+++|+.||++++++...+..
T Consensus 219 ~i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~ 270 (457)
T PRK09581 219 QLRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270 (457)
T ss_pred HHHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHH
Confidence 9997544468999999999999999999999999999999999999866543
No 49
>PRK09483 response regulator; Provisional
Probab=99.66 E-value=5.9e-15 Score=106.57 Aligned_cols=115 Identities=24% Similarity=0.364 Sum_probs=100.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS-ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+|+|+|+++..+..+..+|+.. ++.+. .+.+..+++..+. ...||++++|+.+++.+|.++++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvi~d~~~~~~~g~~~~~ 67 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR--------------TNAVDVVLMDMNMPGIGGLEATR 67 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 47999999999999999999864 77765 7889998888763 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|+++...+......++..|+++|+.||++.+++...+.++
T Consensus 68 ~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~ 118 (217)
T PRK09483 68 KILRYT--PDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSV 118 (217)
T ss_pred HHHHHC--CCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 998754 578999999988888888999999999999999999999887764
No 50
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.66 E-value=4.1e-15 Score=118.84 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=104.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|+||||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~DlvilD~~m~~~~G~~~~~~ 70 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR--------------EQVFDLVLCDVRMAEMDGIATLKE 70 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 478999999999999999999999999999999999988773 456899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++|+..+.....++++.|+.+|+.||++.+++...+.+.
T Consensus 71 ir~~~--~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~ 120 (441)
T PRK10365 71 IKALN--PAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 (441)
T ss_pred HHhhC--CCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHH
Confidence 98754 678999999988888899999999999999999999998777653
No 51
>PRK14084 two-component response regulator; Provisional
Probab=99.65 E-value=6.4e-15 Score=109.06 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=94.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSA-C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~-~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
++|+|+||++..+..+...|...+ + .+..+.++.+++..+. ...||++++|+.||+++|+++++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~--------------~~~~dlv~lDi~m~~~~G~~~~~ 66 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL--------------INQYDIIFLDINLMDESGIELAA 66 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 469999999999999999998754 4 4677899999888763 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +..++|++|+.. ....++++.|+.+|+.||++.+++.+.+.++
T Consensus 67 ~i~~~~--~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~ 115 (246)
T PRK14084 67 KIQKMK--EPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKV 115 (246)
T ss_pred HHHhcC--CCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence 999754 456777777653 4567899999999999999999999888775
No 52
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.65 E-value=5.6e-15 Score=130.24 Aligned_cols=116 Identities=26% Similarity=0.423 Sum_probs=105.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlil~D~~mp~~~g~~~~~~ 1023 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS--------------MQHYDLLITDVNMPNMDGFELTRK 1023 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh--------------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 468999999999999999999999999999999999998873 467999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++|+........++++.|+++|+.||++.++|...+.++
T Consensus 1024 i~~~~--~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 1073 (1197)
T PRK09959 1024 LREQN--SSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073 (1197)
T ss_pred HHhcC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 99754 578999999998888889999999999999999999998877653
No 53
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.64 E-value=6.6e-15 Score=117.91 Aligned_cols=111 Identities=19% Similarity=0.298 Sum_probs=98.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-----CCHHHHH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-----MTGYELL 97 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-----~~g~~~~ 97 (153)
|||+||++..+..+...+ .+|.+..+.++.+++..+. ...||+|++|+.||+ ++|++++
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~--------------~~~~dlvllD~~mp~~~~~~~~g~~~l 64 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR--------------RHEPAVVTLDLGLPPDADGASEGLAAL 64 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh--------------hCCCCEEEEeCCCCCCcCCCCCHHHHH
Confidence 589999999999999888 6899999999999999873 357999999999996 7999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++.. +.+|+|++|+..+.+...++++.|+++|+.||++.+++...+.+.
T Consensus 65 ~~i~~~~--~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 116 (445)
T TIGR02915 65 QQILAIA--PDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRA 116 (445)
T ss_pred HHHHhhC--CCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhh
Confidence 9998754 678999999998889999999999999999999999998777553
No 54
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.63 E-value=3.2e-14 Score=104.10 Aligned_cols=114 Identities=24% Similarity=0.415 Sum_probs=100.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|+++|+++.....+...|...++.+..+.++.+++..+. ...||++++|+.+|+.+|.++++.+
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvl~d~~~~~~~g~~~~~~l 76 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR--------------QTPPDLILLDLMLPGTDGLTLCREI 76 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 48999999999999999999988999999999999988773 3568999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.. +.+|+++++..........+++.|+++|+.||++..++...+..+
T Consensus 77 ~~~---~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~ 124 (240)
T PRK10710 77 RRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 (240)
T ss_pred Hhc---CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 863 468999999888888888899999999999999999998766553
No 55
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.63 E-value=1.9e-14 Score=102.38 Aligned_cols=113 Identities=26% Similarity=0.406 Sum_probs=97.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS-ACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+|+|+|+++..+..+...|... ++. +..+.++.+++..+. ...||++++|+.+++.+|.++++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~dlvi~d~~~~~~~g~~~~~ 67 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP--------------GRGVQVCICDISMPDISGLELLS 67 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHH
Confidence 47999999999999999999754 554 567889999988772 45699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.++. ..|+++++...+......+++.|+++|+.||++.+++...+.++.
T Consensus 68 ~l~~-----~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~ 116 (196)
T PRK10360 68 QLPK-----GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVA 116 (196)
T ss_pred HHcc-----CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 8863 468999999888888899999999999999999999998887653
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.63 E-value=1.7e-14 Score=114.66 Aligned_cols=117 Identities=28% Similarity=0.459 Sum_probs=104.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+||++++++..+..+...|...++.+..+.+..+++..+. ...||+|++|+.+|+.+|.++++.+
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvi~d~~~~~~~g~~l~~~i 68 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE--------------REQPDIILLDVMMPGMDGFEVCRRL 68 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh--------------hcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999888999999999999998873 3569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++....+.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 119 (457)
T PRK09581 69 KSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSL 119 (457)
T ss_pred HcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 875433578999999988888899999999999999999999998777654
No 57
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.63 E-value=2.5e-14 Score=101.26 Aligned_cols=116 Identities=28% Similarity=0.383 Sum_probs=102.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|+++++++.....+...|...++.+..+.++.+++..+. ...||++++|+.+++++|+++++
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~d~ii~d~~~~~~~~~~~~~ 67 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP--------------GLRFGCVVTDVRMPGIDGIELLR 67 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc--------------cCCCCEEEEeCCCCCCcHHHHHH
Confidence 3478999999999999999999988999999999998887762 45699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+++.. +.+|+|+++...+......+++.|+.+|+.||++..++...+..
T Consensus 68 ~l~~~~--~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~ 117 (202)
T PRK09390 68 RLKARG--SPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIER 117 (202)
T ss_pred HHHhcC--CCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHH
Confidence 998754 57899999998888888899999999999999999988766554
No 58
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.63 E-value=1.1e-14 Score=117.20 Aligned_cols=113 Identities=28% Similarity=0.409 Sum_probs=101.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHh
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKE 102 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~ 102 (153)
|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~DlVllD~~~p~~~g~~ll~~l~~ 66 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA--------------RGQPDLLITDVRMPGEDGLDLLPQIKK 66 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--------------cCCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999988773 356999999999999999999999987
Q ss_pred ccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 103 SSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 103 ~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.+.
T Consensus 67 ~~--~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 113 (463)
T TIGR01818 67 RH--PQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERA 113 (463)
T ss_pred hC--CCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHH
Confidence 53 578999999988888889999999999999999999998877664
No 59
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.62 E-value=4e-14 Score=102.15 Aligned_cols=115 Identities=22% Similarity=0.364 Sum_probs=100.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++|+++|+++.....+...+...++.+..+.++.+++..+. ...||++++|+.+|+.+|+++++.+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~d~vild~~~~~~~~~~~~~~i 66 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ--------------SEMYALAVLDINMPGMDGLEVLQRL 66 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------hCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 36999999999999999999988998888999998877662 3569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+... +.+|+|+++...+.....++++.|+++|+.||++..++...+..+
T Consensus 67 ~~~~--~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~ 115 (221)
T PRK15479 67 RKRG--QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRAL 115 (221)
T ss_pred HhcC--CCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Confidence 8754 578999999888888888999999999999999999998766553
No 60
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.61 E-value=2.4e-14 Score=105.32 Aligned_cols=112 Identities=27% Similarity=0.399 Sum_probs=92.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-cE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSA-CK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~-~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+|+|+||++..+..+...|+..+ +. +..+.++.+++..+. ...||++|+|+.||+++|+++++
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~dlv~lDi~~~~~~G~~~~~ 67 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH--------------RLKPDVVFLDIQMPRISGLELVG 67 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 579999999999999999998776 33 456889998887762 34689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++.. ...++|++|+.. +...++++.|+.+|+.||++.+++...+.++
T Consensus 68 ~l~~~---~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~ 115 (238)
T PRK11697 68 MLDPE---HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARL 115 (238)
T ss_pred Hhccc---CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence 98642 234677777653 4567899999999999999999998887765
No 61
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.61 E-value=1.3e-13 Score=89.97 Aligned_cols=119 Identities=34% Similarity=0.537 Sum_probs=101.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
+..+++++++++.....+...+...++. +..+.+..+++..+. ...+|++++|..+++.+|++++
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~di~l~d~~~~~~~~~~~~ 69 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--------------AGGFGFVISDWNMPNMDGLELL 69 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh--------------ccCCCEEEEcCCCCCCCHHHHH
Confidence 4578999999999999999999988884 777888888877662 3568999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++....+.+|+++++..........+++.|+++|+.||++..++...+.++
T Consensus 70 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~ 123 (129)
T PRK10610 70 KTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123 (129)
T ss_pred HHHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHH
Confidence 999875444568899998877778888899999999999999999998777664
No 62
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.57 E-value=6.5e-14 Score=117.10 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=95.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+.++||++||++..+..+..+|...++.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~--------------~~~~Dlvl~d~~lp~~~g~~~l~ 71 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE--------------AGEIDCVVADHEPDGFDGLALLE 71 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh--------------ccCCCEEEEeccCCCCcHHHHHH
Confidence 4578999999999999999999888999999999999988773 45699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCCh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKP 141 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~ 141 (153)
.++... +.+|+|++++..+.....+++..|+.+|+.||.+.
T Consensus 72 ~l~~~~--~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~ 112 (665)
T PRK13558 72 AVRQTT--AVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDD 112 (665)
T ss_pred HHHhcC--CCCCEEEEECCCCHHHHHHHHhcCcceEEeccchh
Confidence 998744 57899999999888899999999999999999764
No 63
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.57 E-value=1.2e-13 Score=101.15 Aligned_cols=114 Identities=9% Similarity=0.067 Sum_probs=90.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
+...+++++||++.....++.+|+..--.+..+.++.+++..+ .+||++++|+.||+.+|++++
T Consensus 8 ~~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~----------------~~~DvvllDi~~p~~~G~~~~ 71 (216)
T PRK10100 8 SHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI----------------SSGSIILLDMMEADKKLIHYW 71 (216)
T ss_pred ccCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccC----------------CCCCEEEEECCCCCccHHHHH
Confidence 3456799999999999999999984333355677888887654 248999999999999999997
Q ss_pred -HHHHhccCCCCCcEEEEeCCCChhhHHHHHH--hcCcccccCCCChhHHHHHHhhh
Q 042079 98 -KKIKESSVMKEVPVVVVSSENIPTRINECLE--EGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 -~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~--~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.++... +.++||++|...+ ....++. .|+.+|+.|+.+.++|.+.+...
T Consensus 72 ~~~i~~~~--p~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v 124 (216)
T PRK10100 72 QDTLSRKN--NNIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGV 124 (216)
T ss_pred HHHHHHhC--CCCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHH
Confidence 5577644 5789999998765 3344555 49999999999999999887654
No 64
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.56 E-value=1.4e-13 Score=106.87 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=86.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHH-hcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLK-NSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~-~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
++||++||++..+..+..+|. ..++.+. .+.++.+++..+. ...||+|++|+.||+++|+++++
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~--------------~~~pDlVllD~~mp~~~G~e~l~ 66 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA--------------AQPPDVILMDLEMPRMDGVEATR 66 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh--------------ccCCCEEEEcCCCCCCCHHHHHH
Confidence 379999999999999999994 5677765 7899999998873 45799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCC--hhhHHHHHHhcCcccccCCC
Q 042079 99 KIKESSVMKEVPVVVVSSENI--PTRINECLEEGAQMFMLKPL 139 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~--~~~~~~a~~~ga~~~l~KP~ 139 (153)
++++.. .+|+++++.... .....++++.|+++|+.||+
T Consensus 67 ~l~~~~---~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 67 RIMAER---PCPILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred HHHHHC---CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 998743 579999987643 45566899999999999999
No 65
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.56 E-value=3.1e-13 Score=96.78 Aligned_cols=116 Identities=22% Similarity=0.387 Sum_probs=98.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKN-SACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~-~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+||++++++.....+...++. .++.+. .+.+..+++..+. ...||++++|+.+++++|.+++
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~dlvi~d~~~~~~~~~~~~ 71 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN--------------RLDPDVILLDLNMKGMSGLDTL 71 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH--------------hcCCCEEEEecCCCCCcHHHHH
Confidence 46899999999999999999975 466664 6888888887662 3569999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++.. +..|+++++..........+++.|+++|+.||++..++...+.+.
T Consensus 72 ~~l~~~~--~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~ 123 (215)
T PRK10403 72 NALRRDG--VTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAG 123 (215)
T ss_pred HHHHHhC--CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHH
Confidence 9998754 467899999888888888899999999999999999998777653
No 66
>PRK13435 response regulator; Provisional
Probab=99.55 E-value=3e-13 Score=92.36 Aligned_cols=113 Identities=21% Similarity=0.270 Sum_probs=94.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~~g~~~ 96 (153)
...+||+++++......+...++..++.+. .+.+..+++..+. ...||++++|+.++ +.+|.++
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~dliivd~~~~~~~~~~~~ 69 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR--------------RRQPDVALVDVHLADGPTGVEV 69 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh--------------hcCCCEEEEeeecCCCCcHHHH
Confidence 457899999999999999999998888876 6888888887662 34689999999998 4799999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.+++. +.+|+|+++...+ ...+...|+++|+.||++..++.+.+.++
T Consensus 70 ~~~l~~~---~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 118 (145)
T PRK13435 70 ARRLSAD---GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYL 118 (145)
T ss_pred HHHHHhC---CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHH
Confidence 9998763 3689999987532 24677899999999999999999988775
No 67
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.55 E-value=4.9e-13 Score=95.90 Aligned_cols=117 Identities=31% Similarity=0.474 Sum_probs=99.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-ACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
...+|+++++++..+..+..+|... ++. +..+.+..+++..+. ...||++++|+.+++.+|+++
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~dlvl~d~~l~~~~~~~~ 70 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE--------------SLDPDLILLDLNMPGMNGLET 70 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH--------------hCCCCEEEEeCCCCCCcHHHH
Confidence 4478999999999999999999764 454 446889898888762 356999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.+++.. +..|+++++...+......+++.|+++|+.||++..++...+.++
T Consensus 71 ~~~l~~~~--~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~ 123 (216)
T PRK10651 71 LDKLREKS--LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQA 123 (216)
T ss_pred HHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 99998754 567999999888888888999999999999999999998877664
No 68
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.54 E-value=5.7e-13 Score=94.76 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=98.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-ACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+||++++++..+..+...|... ++.+ ..+.+..+++..+. ...||++++|+.+++.+|+++
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~dlvl~d~~~~~~~~~~~ 67 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR--------------QLEPDIVILDLGLPGMNGLDV 67 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHH
Confidence 4578999999999999999999865 4554 47788888877652 356999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.+++.. +..|+++++...+......+++.|+++|+.||++..++...+...
T Consensus 68 ~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 120 (211)
T PRK15369 68 IPQLHQRW--PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTV 120 (211)
T ss_pred HHHHHHHC--CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHH
Confidence 99998754 568999999888888888999999999999999999998777653
No 69
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.52 E-value=3.4e-13 Score=98.08 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=83.9
Q ss_pred HHHHHHHHHh---cCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEE---EeCCCCCCCHHHHHHHHHhccCC
Q 042079 33 RKIVENLLKN---SACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVI---TDYCMPGMTGYELLKKIKESSVM 106 (153)
Q Consensus 33 ~~~l~~~l~~---~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii---~D~~~~~~~g~~~~~~lr~~~~~ 106 (153)
+..++.+|.. .++.+..+.++.+++..+. ...||+++ +|+.||+++|++++++|++..
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~--------------~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~-- 66 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS--------------RISFSAVIFSLSAMRSERREGLSCLTELAIKF-- 66 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc--------------cCCCCEEEeeccccCCCCCCHHHHHHHHHHHC--
Confidence 5677788864 3566778999999988772 45689998 688889999999999998754
Q ss_pred CCCcEEEEeCCCChhhHHHHH-HhcCcccccCCCChhHHHHHHhhh
Q 042079 107 KEVPVVVVSSENIPTRINECL-EEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 107 ~~~pii~~t~~~~~~~~~~a~-~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+|||++|...++.....++ +.|+++|+.||.+++++.+.+...
T Consensus 67 p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v 112 (207)
T PRK11475 67 PRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLS 112 (207)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 689999999876665555554 799999999999999999888764
No 70
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.52 E-value=7e-13 Score=103.51 Aligned_cols=105 Identities=33% Similarity=0.418 Sum_probs=88.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+||++||+...+..+...|... ++.+. .+.++.+++..+. ...||++++|+.||+++|+++
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~--------------~~~~DlVllD~~mp~~dgle~ 67 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK--------------KLNPDVITLDVEMPVMDGLDA 67 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh--------------hhCCCEEEEeCCCCCCChHHH
Confidence 3578999999999999999999865 77766 7899999988772 456999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCC--ChhhHHHHHHhcCcccccCCCC
Q 042079 97 LKKIKESSVMKEVPVVVVSSEN--IPTRINECLEEGAQMFMLKPLK 140 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~~ 140 (153)
++.+++.. + +|+|+++... ......++++.|+++|+.||+.
T Consensus 68 l~~i~~~~--~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 68 LEKIMRLR--P-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHHHHHhC--C-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 99998754 3 8999998753 3355678999999999999994
No 71
>PRK09191 two-component response regulator; Provisional
Probab=99.49 E-value=2.1e-12 Score=96.23 Aligned_cols=113 Identities=19% Similarity=0.311 Sum_probs=94.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~g~~~~ 97 (153)
..+++|+|+++..+..+...|+..|+.+. .+.++.+++..+. ...||++|+|+.+|+ .+|++++
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~--------------~~~~dlvi~d~~~~~~~~g~e~l 202 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK--------------KTRPGLILADIQLADGSSGIDAV 202 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh--------------ccCCCEEEEecCCCCCCCHHHHH
Confidence 46799999999999999999998888877 6888888888772 356999999999995 7999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.++... .+|+|++++..+... .+...++.+|+.||++.+++...+.++
T Consensus 203 ~~l~~~~---~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~ 251 (261)
T PRK09191 203 NDILKTF---DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQA 251 (261)
T ss_pred HHHHHhC---CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHH
Confidence 9998743 689999998655443 344567889999999999999988875
No 72
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.48 E-value=1.9e-12 Score=94.18 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=90.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc---EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC--CCCCCHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSAC---KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC--MPGMTGYE 95 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~---~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~--~~~~~g~~ 95 (153)
+.|+|+||++..+..++.+|+..++ .+..+.++.+++..+. ..+||++++|+. ++..+|.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~--------------~~~pDlvLlDl~~~l~~~~g~~ 66 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD--------------SLRPSVVFINEDCFIHDASNSQ 66 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh--------------ccCCCEEEEeCcccCCCCChHH
Confidence 3589999999999999999986542 4567899999888762 356899999965 88889999
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc-cccCCCChhHHHHHHhhh
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM-FMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~-~l~KP~~~~~l~~~~~~~ 151 (153)
+++.|++.. +.+++|++|...+.... .++..|+.. |+.|+.+++++.+.++..
T Consensus 67 ~i~~i~~~~--p~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v 120 (207)
T PRK15411 67 RIKQIINQH--PNTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDI 120 (207)
T ss_pred HHHHHHHHC--CCCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHH
Confidence 999998754 57899999987665543 355555544 889999999999888764
No 73
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.48 E-value=2.4e-12 Score=110.33 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=101.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||++||++..+..+...|...||.+..+.++.+++..+.. ....||+||+ .+|.++|.++++.
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~------------~~~~~DlVll--~~~~~~g~~l~~~ 762 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISK------------GPERFDLVLV--DDRLLDEEQAAAA 762 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh------------CCCCceEEEE--CCCCCCHHHHHHH
Confidence 4589999999999999999999999999999999999987731 1234899999 6999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++... +.+|||+++.........+++..| ++|+.||++..++..++.+.+
T Consensus 763 l~~~~--~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l 812 (828)
T PRK13837 763 LHAAA--PTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTAL 812 (828)
T ss_pred HHhhC--CCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHH
Confidence 98754 678999999988888888999999 999999999999998887753
No 74
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.47 E-value=9.8e-13 Score=101.36 Aligned_cols=103 Identities=37% Similarity=0.476 Sum_probs=90.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
++||+|||....|..++.+|...+ ..+..+.++.++++.+. ...||+|.+|+.||.++|+++++
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~--------------~~~PDVi~ld~emp~mdgl~~l~ 67 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK--------------KLKPDVITLDVEMPVMDGLEALR 67 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH--------------hcCCCEEEEecccccccHHHHHH
Confidence 689999999999999999999887 56778999999999883 56799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCC--hhhHHHHHHhcCcccccCCCC
Q 042079 99 KIKESSVMKEVPVVVVSSENI--PTRINECLEEGAQMFMLKPLK 140 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~--~~~~~~a~~~ga~~~l~KP~~ 140 (153)
.+.+. ..+|||++++... .+...++++.|+.||+.||..
T Consensus 68 ~im~~---~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 68 KIMRL---RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred HHhcC---CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 98764 4789999987543 566688999999999999974
No 75
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.43 E-value=9.7e-12 Score=77.87 Aligned_cols=112 Identities=31% Similarity=0.578 Sum_probs=95.8
Q ss_pred EEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhc
Q 042079 24 LAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKES 103 (153)
Q Consensus 24 Liidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~ 103 (153)
+++++++..+..+...+...++.+..+.+..+++..+. ...+|++++|..++..++.++++.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ii~~~~~~~~~~~~~~~~l~~~ 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA--------------EEKPDLILLDIMMPGMDGLELLRRIRKR 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH--------------hCCCCEEEEecCCCCCchHHHHHHHHHh
Confidence 47899999999999999888988888888888877662 3568999999999999999999999875
Q ss_pred cCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 104 SVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 104 ~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
. +.+|+++++..........++..|+.+|+.||++..++...+.+.
T Consensus 67 ~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 G--PDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred C--CCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2 568999888776677778889999999999999999998887654
No 76
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.41 E-value=3e-12 Score=90.53 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=92.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
...++|+++|.+..+..+...|...||.+ ..+.++.++.... ..+.||+||+|+.+|..+-.+-+
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~--------------~~~~pDvVildie~p~rd~~e~~ 69 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC--------------ERLQPDVVILDIEMPRRDIIEAL 69 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH--------------HhcCCCEEEEecCCCCccHHHHH
Confidence 45789999999999999999999899864 4566666655544 35789999999999999844444
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
.+..+ . ...|+|++|.+.++..+..+.+.|+.+|+.||+++..+...+.
T Consensus 70 ~~~~~-~--~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 70 LLASE-N--VARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred HHhhc-C--CCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 33333 2 4679999999999999999999999999999999999886553
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.41 E-value=1.5e-11 Score=99.76 Aligned_cols=118 Identities=21% Similarity=0.328 Sum_probs=102.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~g~~~~~ 98 (153)
..+||++++++..+..+...|+..++.+..+.+..+++..+. ....||++++|..+++ ++|+++++
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------~~~~~d~vi~d~~~~~~~~~~~~~~ 481 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILD-------------SHPEVDLLFTDLIMPGGMNGVMLAR 481 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHh-------------cCCCceEEEEeccCCCCCCHHHHHH
Confidence 468999999999999999999989999999999999988762 1235999999999997 89999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.++... +.+|+++++..........++..|+.+|+.||++.+++...+.++.
T Consensus 482 ~l~~~~--~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 533 (540)
T PRK13557 482 EARRRQ--PKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVL 533 (540)
T ss_pred HHHHhC--CCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHh
Confidence 999754 5789999998877777778889999999999999999998887753
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.36 E-value=8.8e-12 Score=95.57 Aligned_cols=86 Identities=33% Similarity=0.576 Sum_probs=73.4
Q ss_pred EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHH
Q 042079 49 TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLE 128 (153)
Q Consensus 49 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~ 128 (153)
.+.++.+++..+. ...||+|++|+.||+++|+++++.+++.. +.+|+|++++..+.+...++++
T Consensus 2 ~a~~g~~al~~l~--------------~~~pDlVL~D~~mp~~~Gle~~~~ir~~~--~~ipiI~lt~~~~~~~~~~al~ 65 (303)
T PRK10693 2 LAANGVDALELLG--------------GFTPDLIICDLAMPRMNGIEFVEHLRNRG--DQTPVLVISATENMADIAKALR 65 (303)
T ss_pred EeCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHH
Confidence 3567788877762 35699999999999999999999999754 5789999999988888999999
Q ss_pred hcCcccccCCC-ChhHHHHHHhh
Q 042079 129 EGAQMFMLKPL-KPSDVKKLTGH 150 (153)
Q Consensus 129 ~ga~~~l~KP~-~~~~l~~~~~~ 150 (153)
.|+++|+.||+ +.+++...+.+
T Consensus 66 ~Ga~dyl~KP~~~~~~L~~~i~~ 88 (303)
T PRK10693 66 LGVQDVLLKPVKDLNRLREMVFA 88 (303)
T ss_pred CCCcEEEECCCCcHHHHHHHHHH
Confidence 99999999999 48888776554
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.19 E-value=1.9e-10 Score=97.01 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=81.7
Q ss_pred CeEEEEeCCHH--------HHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 21 PHVLAVDDSIV--------DRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 21 ~~iLiidd~~~--------~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
++||||||+.. ..+.+...|+..||++..+.++.+++..+. ....||+||+|+.||+++
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~-------------~~~~~DlVLLD~~LPd~d 67 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILS-------------SNEAIDCLMFSYQMEHPD 67 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-------------hcCCCcEEEEECCCCCCc
Confidence 36999999995 688999999999999999999999999883 124799999999999999
Q ss_pred HH----HHHHHHHhccCCCCCcEEEEeCCCC--hhhHHHHHHhcCcccccCCCC
Q 042079 93 GY----ELLKKIKESSVMKEVPVVVVSSENI--PTRINECLEEGAQMFMLKPLK 140 (153)
Q Consensus 93 g~----~~~~~lr~~~~~~~~pii~~t~~~~--~~~~~~a~~~ga~~~l~KP~~ 140 (153)
|+ ++++++|+.. .++|||++|+..+ .......+ .-++.|+.+--+
T Consensus 68 G~~~~~ell~~IR~~~--~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~ 118 (755)
T PRK15029 68 EHQNVRQLIGKLHERQ--QNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILED 118 (755)
T ss_pred cchhHHHHHHHHHhhC--CCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCC
Confidence 97 8999999743 5899999998875 33323322 235666666433
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=2.4e-09 Score=79.81 Aligned_cols=113 Identities=30% Similarity=0.461 Sum_probs=91.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-cE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSA-CK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~-~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
++++++||++..+..+..++.... .+ +..+.+..++++.+. ...+|++|+|+.||+++|+++.+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~fldI~~~~~~G~ela~ 67 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ--------------GLRPDLVFLDIAMPDINGIELAA 67 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh--------------ccCCCeEEEeeccCccchHHHHH
Confidence 579999999999999999988322 22 236888888888773 34799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++... +..+|+++|+. .+....+++..+.+|+.||++.+++...+.++
T Consensus 68 ~i~~~~--~~~~Ivfvt~~--~~~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 68 RIRKGD--PRPAIVFVTAH--DEYAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred HhcccC--CCCeEEEEEeh--HHHHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 999753 46678888865 45666788999999999999999999887653
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.75 E-value=3.9e-07 Score=78.79 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=90.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+.+|+++|+++..+..+..+|+..|+.+..+.+..+ + ....||++++|..+|+..+...+
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l--------------~~~~~d~il~~~~~~~~~~~~~~ 595 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L--------------PEAHYDILLLGLPVTFREPLTML 595 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h--------------ccCCCCEEEecccCCCCCCHHHH
Confidence 35678999999999999999999999999998888776 2 13469999999999987766554
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
............+++++++.........+.+.|+++|+.||++..++...+.
T Consensus 596 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~ 647 (919)
T PRK11107 596 HERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALL 647 (919)
T ss_pred HHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHH
Confidence 4433222223456777787777888888999999999999999999877664
No 82
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.34 E-value=9.4e-06 Score=53.22 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=76.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIK 101 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr 101 (153)
+|||||||...+..+..+|+-.|+.+..+.+..- .... .....+.+++-..-.. ...+.++.+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~--------------~~~~~~~~~v~~g~~~-~~~~~l~~l~ 64 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQAD--------------WSSPWEACAVILGSCS-KLAELLKELL 64 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhh--------------hhcCCcEEEEEecCch-hHHHHHHHHH
Confidence 5899999999999999999999998888776443 1211 1233455544433333 5567778776
Q ss_pred hccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 102 ESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.. +.+|++++......... ..+.+-|..|++..+|.+++.|+.
T Consensus 65 ~~~--~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~cQ 108 (109)
T PF06490_consen 65 KWA--PHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRCQ 108 (109)
T ss_pred hhC--CCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHhc
Confidence 644 68999999876555111 126667899999999999998864
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.25 E-value=2.3e-06 Score=68.31 Aligned_cols=85 Identities=32% Similarity=0.477 Sum_probs=70.9
Q ss_pred EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH
Q 042079 46 KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE 125 (153)
Q Consensus 46 ~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 125 (153)
++..+..+..++..+ ..+++|++++|..||+++|++++++++.... ++++++.........+
T Consensus 14 ~v~~a~~g~~~l~~~--------------~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~~~~~~ 75 (435)
T COG3706 14 EVATAKKGLIALAIL--------------LDHKPDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVR 75 (435)
T ss_pred hhhhccchHHHHHHH--------------hcCCCCeEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCCCcchh
Confidence 455577788877766 3678999999999999999999999997542 3788888888888889
Q ss_pred HHHhcCcccccCCCChhHHHHHH
Q 042079 126 CLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 126 a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
..+.|++.|++||++...+....
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~r~ 98 (435)
T COG3706 76 GLKAGADDFLTKPVNDSQLFLRA 98 (435)
T ss_pred HHhhhhhhhccCCCChHHHHHhh
Confidence 99999999999999998887543
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.80 E-value=0.00028 Score=37.41 Aligned_cols=54 Identities=35% Similarity=0.572 Sum_probs=45.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
+++++++++.....+...+...++.+..+.+...+...+. ...++++++|+.++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK--------------EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH--------------hcCCCEEEEeccCC
Confidence 6899999999999999999888999888888888877662 34689999997653
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.61 E-value=0.0046 Score=41.15 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=72.5
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEecC---HHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTAEN---GMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIK 101 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr 101 (153)
|.|..-...+..+|+..||++..... .++.++.+. ..++|+|.+...++.. ..-++++.|+
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~--------------~~~~d~V~iS~~~~~~~~~~~~~~~~L~ 75 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI--------------QEDVDVIGLSSLSGGHMTLFPEVIELLR 75 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEcccchhhHHHHHHHHHHHH
Confidence 55667777888889999999876443 445555542 4679999998877643 3456677787
Q ss_pred hccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 102 ESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
+... +. +.+++.+....+...++.+.|++.|+..=-+.+++..-+
T Consensus 76 ~~~~-~~-i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 76 ELGA-GD-ILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred hcCC-CC-CEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 7542 23 445566555566677888999999998777776665433
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.57 E-value=0.01 Score=40.44 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=82.4
Q ss_pred CCCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
+.+++++. |.|..-...+..+|+..||++.... ..++.++.+. ...+|+|.+.+.+...
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~--------------~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI--------------ETDADAILVSSLYGHG 67 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEcCccccC
Confidence 45677777 7788888888999999999987644 3455555542 4579999999877753
Q ss_pred --CHHHHHHHHHhccCCCCCcEEEEeCCC------ChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 --TGYELLKKIKESSVMKEVPVVVVSSEN------IPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 --~g~~~~~~lr~~~~~~~~pii~~t~~~------~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
...++++.|++... +.++++ +.+.. ......++.+.|++.++....+.+++..-+.+.
T Consensus 68 ~~~~~~~~~~L~~~~~-~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 68 EIDCRGLREKCIEAGL-GDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred HHHHHHHHHHHHhcCC-CCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 35677788887542 355544 44432 234456788999999988888888887766653
No 87
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=97.17 E-value=0.0044 Score=40.88 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHHHHHHHHhccCCCCCc
Q 042079 33 RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~~~~~lr~~~~~~~~p 110 (153)
...+...|++.|+++..+.+..+++..+. ....+.+|+++|. +. ....++++.++.++ ..+|
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~-------------~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iP 69 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIE-------------SFTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIP 69 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHH-------------CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-E
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHH-------------hCCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCC
Confidence 45677778888999999999999999885 3467899999986 21 23567889998876 6899
Q ss_pred EEEEeCCCChhhHHHHHHhcCcccccCCCCh
Q 042079 111 VVVVSSENIPTRINECLEEGAQMFMLKPLKP 141 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~ 141 (153)
|++++.....+..-.-.-..+++|+-..-+.
T Consensus 70 VFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t 100 (115)
T PF03709_consen 70 VFLLAERDTTEDLPAEVLGEVDGFIWLFEDT 100 (115)
T ss_dssp EEEEESCCHHHCCCHHHHCCESEEEETTTTT
T ss_pred EEEEecCCCcccCCHHHHhhccEEEEecCCC
Confidence 9999986544433333334466676554433
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.07 E-value=0.025 Score=38.26 Aligned_cols=108 Identities=14% Similarity=0.056 Sum_probs=73.2
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIK 101 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr 101 (153)
|.|..-.+.+..+|+..||+|... .+.++.++... .+.+|+|.+...+... ..-++++.|+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~--------------e~~adii~iSsl~~~~~~~~~~~~~~L~ 78 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV--------------EADVHVVGVSSLAGGHLTLVPALRKELD 78 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEcCchhhhHHHHHHHHHHHH
Confidence 567777788999999999998753 35666666552 3578999887655432 2345667777
Q ss_pred hccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 102 ESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
+... ..++ +++.+....+...+..+.|++.|+..=-+..++.+.+.+
T Consensus 79 ~~g~-~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 79 KLGR-PDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred hcCC-CCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 7542 2344 445544455667788999999999877777777655443
No 89
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=96.91 E-value=0.011 Score=39.06 Aligned_cols=109 Identities=11% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+.+++.|+.|.....-..++|.+.+.+|....+..+ + -.+.||++++.+-.+-.+.+.+..
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----l--------------p~~hYD~~Ll~vavtfr~n~tm~~ 71 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----L--------------PPAHYDMMLLGVAVTFRENLTMQH 71 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----c--------------ChhhhceeeecccccccCCchHHH
Confidence 4578999999999888888999999998887665443 2 124589999998776554444332
Q ss_pred -HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHH
Q 042079 99 -KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKK 146 (153)
Q Consensus 99 -~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~ 146 (153)
++.+.-.+.+- +|+--.....-...+.+..|+.++|.||++..++..
T Consensus 72 ~~l~~Al~mtd~-vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlp 119 (140)
T COG4999 72 ERLAKALSMTDF-VILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLP 119 (140)
T ss_pred HHHHHHHhhhcc-eEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHH
Confidence 22221111222 332223334455567889999999999999998876
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.76 E-value=0.052 Score=35.68 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=62.2
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIK 101 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr 101 (153)
|.|..-...+..+|+..||++.... ..++.++.+. ..+||+|.+...+... ...++++.+|
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~--------------~~~pdvV~iS~~~~~~~~~~~~~i~~l~ 75 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK--------------EEDADAIGLSGLLTTHMTLMKEVIEELK 75 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEeccccccHHHHHHHHHHHH
Confidence 4566666788889999999986533 3444445442 4579999998875543 4567778888
Q ss_pred hccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 102 ESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
+... ..++| ++.+.........+.+.|+|.|+..
T Consensus 76 ~~~~-~~~~i-~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 76 EAGL-DDIPV-LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HcCC-CCCeE-EEECCCCChhHHHHHHcCCeEEECC
Confidence 7542 25554 4555444443457889999888753
No 91
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.44 E-value=0.0065 Score=53.32 Aligned_cols=51 Identities=24% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM 88 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~ 88 (153)
....+||++||++..+..+..+|++.|+.|..+.+.. ....||+|++|+.+
T Consensus 687 l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~--------------------~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 687 LDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL--------------------ISQEYDIFLTDNPS 737 (894)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc--------------------cCCCCCEEEECCCC
Confidence 3457899999999999999999999999998877521 13469999999983
No 92
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.35 E-value=0.18 Score=34.29 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=73.1
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC--HHHHHHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT--GYELLKKIK 101 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~--g~~~~~~lr 101 (153)
|-|..-.+.+..+|+..||+|... .+.++.++... .+.+|+|-+...+...- .-++.+.|+
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~--------------~~~adiVglS~l~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI--------------ETKADAILVSSLYGHGEIDCKGLRQKCD 77 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEecccccCHHHHHHHHHHHH
Confidence 335555677888999999988753 45566666552 35799999887775432 455677788
Q ss_pred hccCCCCCcEEEEeCCC--Chh----hHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 102 ESSVMKEVPVVVVSSEN--IPT----RINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~--~~~----~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+... .. +.+++.+.. .++ ...++.+.|++..+...-.++++..-+.+.+
T Consensus 78 ~~gl-~~-~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 78 EAGL-EG-ILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred HCCC-CC-CEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 7653 34 345565531 122 2346889999998888888888887777644
No 93
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.13 E-value=0.06 Score=46.12 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=59.4
Q ss_pred CeEEEEeCCH-H-----HHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 21 PHVLAVDDSI-V-----DRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 21 ~~iLiidd~~-~-----~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
++++||+++- . ..+.+...|++.|+++..+.+..+++..+. ......++++++... ..
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~---~~ 64 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE-------------HNPRICGVIFDWDEY---SL 64 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-------------cccceeEEEEecccc---hH
Confidence 3577777663 1 135566778889999999999999988774 345689999996443 35
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCC
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSEN 118 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~ 118 (153)
++++.+|++. ..+||+++....
T Consensus 65 ~~~~~~~~~~--~~~Pv~~~~~~~ 86 (713)
T PRK15399 65 DLCSDINQLN--EYLPLYAFINTH 86 (713)
T ss_pred HHHHHHHHhC--CCCCEEEEcCcc
Confidence 5888888765 589999987643
No 94
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=96.07 E-value=0.17 Score=36.53 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=67.1
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
..++++. |-|..=...+..+|+..||+|.... ..++.++.+ ...+||+|-+.+.++..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~--------------~~~~~d~v~lS~~~~~~~ 147 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV--------------KEHKPDILGLSALMTTTM 147 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH--------------HHcCCCEEEEeccccccH
Confidence 4567777 7777778889999999999987532 344555555 24679999999877654
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
...++++.+|+.....+++|++=...-+.+ -+...|+|.|-.
T Consensus 148 ~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~ 190 (201)
T cd02070 148 GGMKEVIEALKEAGLRDKVKVMVGGAPVNQE---FADEIGADGYAE 190 (201)
T ss_pred HHHHHHHHHHHHCCCCcCCeEEEECCcCCHH---HHHHcCCcEEEC
Confidence 456677888876432356665443333332 356779998854
No 95
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=95.80 E-value=0.087 Score=45.17 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=58.8
Q ss_pred CeEEEEeCCH------HHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 21 PHVLAVDDSI------VDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 21 ~~iLiidd~~------~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
+++++|+++. ...+.+...|++.|++|..+.+..+++..+. ......++++++... ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~---~~ 64 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIE-------------NNARLCGVIFDWDKY---NL 64 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-------------cccceeEEEEecchh---hH
Confidence 3566776652 1245666778889999999999999988774 345688999996442 35
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCC
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSEN 118 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~ 118 (153)
.+++.+|++. ..+||+++....
T Consensus 65 ~~~~~~~~~~--~~~Pv~~~~~~~ 86 (714)
T PRK15400 65 ELCEEISKMN--ENLPLYAFANTY 86 (714)
T ss_pred HHHHHHHHhC--CCCCEEEEcccc
Confidence 5888888765 589999988743
No 96
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=95.45 E-value=0.093 Score=40.60 Aligned_cols=67 Identities=19% Similarity=0.134 Sum_probs=45.1
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeC-CCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSS-ENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~-~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
....++++|..+-. ..+...- . ++..+++++. ..+.+....+++.|+.+|+.+|.+..++.+.+.+.
T Consensus 18 ~~~~~v~~~~~~~~----~~~~~~~--p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 18 ARAPLVLVDADMAE----ACAAAGL--P--RRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred ccCCeEEECchhhh----HHHhccC--C--CCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 44678998864411 1111111 1 2334554544 55688889999999999999999999998887664
No 97
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=95.32 E-value=0.41 Score=35.06 Aligned_cols=101 Identities=11% Similarity=0.142 Sum_probs=66.5
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
..++++. |.|..=...+..+|+..||+|.... ...+.++.+ ...++|+|.+...|+..
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~--------------~~~~~~~V~lS~~~~~~~ 153 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA--------------KEHKADIIGLSGLLVPSL 153 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH--------------HHcCCCEEEEccchhccH
Confidence 4567777 7788888888999999999987644 244444444 24679999999888754
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH---HHHhcCccccc
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIPTRINE---CLEEGAQMFML 136 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~---a~~~ga~~~l~ 136 (153)
...++++.|++.. .+++|++=....+.+...+ +-..|+|.|-.
T Consensus 154 ~~~~~~i~~L~~~~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 154 DEMVEVAEEMNRRG--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEChhcCHHHHhhhhccccCCCceEec
Confidence 4566778888754 3666654443334443322 13468887753
No 98
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.22 E-value=0.44 Score=30.23 Aligned_cols=88 Identities=19% Similarity=0.147 Sum_probs=57.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEEe------cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTTA------ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~~------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
+||||...+.....++..+++.|+..... .....-++.. -.+.|+||+=...-.-+...
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~---------------i~~aD~VIv~t~~vsH~~~~ 65 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK---------------IKKADLVIVFTDYVSHNAMW 65 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh---------------cCCCCEEEEEeCCcChHHHH
Confidence 48999998888899999999999987777 2222113321 24579998866666666666
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHH
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLE 128 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~ 128 (153)
.++..-+. ..+|+++.-+ .+.....+++.
T Consensus 66 ~vk~~akk---~~ip~~~~~~-~~~~~l~~~l~ 94 (97)
T PF10087_consen 66 KVKKAAKK---YGIPIIYSRS-RGVSSLERALE 94 (97)
T ss_pred HHHHHHHH---cCCcEEEECC-CCHHHHHHHHH
Confidence 66665443 3678885543 45555555543
No 99
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.22 E-value=0.57 Score=31.55 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=70.2
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEE---ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTT---AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIK 101 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr 101 (153)
|-|..-.+.+..+|+..||+|.- ..+.++.++... .+++|+|.+..-|... ..-++++.|+
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~--------------~~~adiVglS~L~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI--------------ETDADAILVSSLYGHGEIDCKGLREKCD 75 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEeccccCCHHHHHHHHHHHH
Confidence 33555567888899999998864 345555555542 3579999988777653 3456777888
Q ss_pred hccCCCCCcEEEEeCCC--C----hhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 102 ESSVMKEVPVVVVSSEN--I----PTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~--~----~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
+... ..++++ +.+.. . .+...++.+.|++..+...-+++++.+-+
T Consensus 76 ~~gl-~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 76 EAGL-KDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred HCCC-CCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 7653 355544 44432 1 33446688999999988777777776544
No 100
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=95.08 E-value=0.33 Score=31.63 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-CCC-CHHHHHHHHHhc
Q 042079 29 SIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-PGM-TGYELLKKIKES 103 (153)
Q Consensus 29 ~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-~~~-~g~~~~~~lr~~ 103 (153)
++.-...+..+|++.|+++.... +..+..+.+. ..+||+|.+...+ +.. ...++++.+|+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~--------------~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~ 78 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR--------------AERPDVVGISVSMTPNLPEAKRLARAIKER 78 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH--------------HTTCSEEEEEESSSTHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh--------------cCCCcEEEEEccCcCcHHHHHHHHHHHHhc
Confidence 44556788899999999987663 2344444442 3579999998843 333 456677777764
Q ss_pred cCCCCCcEEEEeCCCChhhHHHHHH--hcCcccccC
Q 042079 104 SVMKEVPVVVVSSENIPTRINECLE--EGAQMFMLK 137 (153)
Q Consensus 104 ~~~~~~pii~~t~~~~~~~~~~a~~--~ga~~~l~K 137 (153)
. ++++++ +.+........++++ .|+|..+.-
T Consensus 79 ~--p~~~iv-~GG~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 79 N--PNIPIV-VGGPHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp C--TTSEEE-EEESSSGHHHHHHHHHHHTSEEEEEE
T ss_pred C--CCCEEE-EECCchhcChHHHhccCcCcceecCC
Confidence 3 466555 444443444455555 677765543
No 101
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=94.74 E-value=0.54 Score=33.92 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHHh
Q 042079 28 DSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIKE 102 (153)
Q Consensus 28 d~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr~ 102 (153)
.|..-...+..+|+..||+|.... ..++.++.+ ...+||+|.+.+.++.. .-.++++.+++
T Consensus 96 ~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~--------------~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~ 161 (197)
T TIGR02370 96 VHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV--------------KKEKPLMLTGSALMTTTMYGQKDINDKLKE 161 (197)
T ss_pred hhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH--------------HHcCCCEEEEccccccCHHHHHHHHHHHHH
Confidence 455666778888999999987543 334444444 24679999999887754 34567778887
Q ss_pred ccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 103 SSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 103 ~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
....+.++|+ +.+..-.. .-+.+.|+|.|-.
T Consensus 162 ~~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 162 EGYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred cCCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 6443345554 54433222 2356789998854
No 102
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=94.33 E-value=0.84 Score=34.41 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCcE--EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcE
Q 042079 34 KIVENLLKNSACK--VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPV 111 (153)
Q Consensus 34 ~~l~~~l~~~~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pi 111 (153)
+.+++.|+..... ++.......+.+.+. ...||.+++|+.-...+--++...++.... ..++.
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a--------------~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~-~g~~~ 72 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLG--------------LAGFDWLVLDGEHAPNDVSTFIPQLMALKG-SASAP 72 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHH--------------hcCCCEEEEccccCCCCHHHHHHHHHHHhh-cCCCc
Confidence 3466666654322 223233334556553 346999999999988887777776664332 34555
Q ss_pred EEEeCCCChhhHHHHHHhcCcccccC-CCChhHHHHHHhhh
Q 042079 112 VVVSSENIPTRINECLEEGAQMFMLK-PLKPSDVKKLTGHL 151 (153)
Q Consensus 112 i~~t~~~~~~~~~~a~~~ga~~~l~K-P~~~~~l~~~~~~~ 151 (153)
++=.+..++..+.++++.|++.++.. --+.++.++++..+
T Consensus 73 lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 73 VVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 55666678899999999999998654 35666777766543
No 103
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.00 E-value=0.86 Score=34.10 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=33.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.++++.+++. ..+|+|+=..-.++++..++++.|++..+.
T Consensus 164 ~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 164 PYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred HHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 6888888874 368998888888999999999999998753
No 104
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=93.88 E-value=1.2 Score=33.40 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=55.5
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~~~l~~~~~~~ 151 (153)
..||.|++|+.-...+.-++...++.... .....++=.+..+...+.++++.|++++ +.|--+.+++++++..+
T Consensus 32 ~g~D~v~iDlEH~~~~~~~~~~~~~a~~~-~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 32 AGFDWLLIDGEHAPNDVRTILSQLQALAP-YPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHh-cCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 46999999998888887777777765322 2345555566667778899999999986 56677888888877654
No 105
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.35 E-value=1.2 Score=33.35 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=38.6
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc-----cCCCChhHHHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM-----LKPLKPSDVKKL 147 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l-----~KP~~~~~l~~~ 147 (153)
.++++.+++. ..+|+|+=..-..+++..++++.|++..+ .|.-++..+-+.
T Consensus 164 ~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~a 219 (250)
T PRK00208 164 PYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARA 219 (250)
T ss_pred HHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHH
Confidence 6788888874 36899988888899999999999999874 453344554433
No 106
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.08 E-value=0.57 Score=33.68 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=51.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC--CCCC--HHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM--PGMT--GYEL 96 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~--~~~~--g~~~ 96 (153)
++||+||+...+--.|.+++++.|.++....+.......+ ...+||.|++.-.. |... ..++
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~--------------~~~~pd~iviSPGPG~P~d~G~~~~~ 67 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI--------------EALKPDAIVISPGPGTPKDAGISLEL 67 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH--------------hhcCCCEEEEcCCCCChHHcchHHHH
Confidence 5799999999898899999999998877776653222322 13458999987544 3322 3445
Q ss_pred HHHHHhccCCCCCcEEEEeC
Q 042079 97 LKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~ 116 (153)
++++. .++||+-+.-
T Consensus 68 i~~~~-----~~~PiLGVCL 82 (191)
T COG0512 68 IRRFA-----GRIPILGVCL 82 (191)
T ss_pred HHHhc-----CCCCEEEECc
Confidence 55442 3689987763
No 107
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=92.17 E-value=3.3 Score=31.07 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=53.4
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC-CCChhHHHHHHhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK-PLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K-P~~~~~l~~~~~~ 150 (153)
..||.+++|+.-...+--++...++.... ..++.++=.+..++..+.++++.|++.++.. --+.++.++++..
T Consensus 32 ~G~D~v~iD~EHg~~~~~~~~~~~~a~~~-~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 32 AGFDWLLLDGEHAPNDVLTFIPQLMALKG-SASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 45999999999988887777777764332 3455555666678888999999999998654 3466666666654
No 108
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=91.95 E-value=3.3 Score=35.87 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=69.3
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIK 101 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr 101 (153)
|.|..-...+..+|...|++|... .+.++.++... ...+|+|++-..+... ..-.+++.|+
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~--------------~~~a~ivvlcs~d~~~~e~~~~l~~~Lk 658 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV--------------ENDVHVVGVSSLAAGHKTLVPALIEALK 658 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH--------------HcCCCEEEEeccchhhHHHHHHHHHHHH
Confidence 346666788889999999998643 35666666552 3568888876555432 3567788888
Q ss_pred hccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 102 ESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
+.+. .++++ ++.+...+.....+.+.|+|.|+..=.+..++.+.+
T Consensus 659 ~~G~-~~v~v-l~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l 703 (714)
T PRK09426 659 KLGR-EDIMV-VVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDL 703 (714)
T ss_pred hcCC-CCcEE-EEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHH
Confidence 7641 23434 355432344446678899999998777777665443
No 109
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.88 E-value=3.8 Score=31.16 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=51.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCC-ChhHHHHHHhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPL-KPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~-~~~~l~~~~~~ 150 (153)
..||.+++|+.-...+--++...++.... ..++.++=....+...+.++++.|+++.+..=+ +.++.++++..
T Consensus 38 ~GfD~v~iD~EHg~~~~~~l~~~i~a~~~-~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 38 SGYDWLLIDGEHAPNTIQDLYHQLQAIAP-YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred cCCCEEEEccccCCCCHHHHHHHHHHHHh-cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 45999999999988887777666664332 344445566667888899999999999876544 44555555543
No 110
>PLN02591 tryptophan synthase
Probab=90.66 E-value=0.82 Score=34.35 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++++++|+. .++|+++++-.+. +....+|.+.|+++.|.-.+.+++..+....+
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 457777777743 4689888887543 44567888999999999999988888776654
No 111
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.61 E-value=1.3 Score=33.36 Aligned_cols=58 Identities=21% Similarity=0.456 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCC------ChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSEN------IPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~------~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..+++++++|+.. .++|+++++-.+ .+....++.+.|+++.+.-.+.+++..+....+
T Consensus 75 ~~~~~~~~~r~~~--~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKD--PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3467777777433 578998888543 245578899999999999888888887776554
No 112
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=90.56 E-value=7.1 Score=31.13 Aligned_cols=67 Identities=16% Similarity=0.073 Sum_probs=35.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++--+....-|..+++.+.- ..|+|.-..........+... ..+++..|-+.+++.+.+.+++
T Consensus 320 aDi~~v~~S~~e~~g~~~lEAma~-----G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll 386 (425)
T PRK05749 320 ADIAFVGGSLVKRGGHNPLEPAAF-----GVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLL 386 (425)
T ss_pred CCEEEECCCcCCCCCCCHHHHHHh-----CCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHh
Confidence 477666433322334455555442 568874222122233322221 2356667888888887777654
No 113
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.47 E-value=5 Score=28.73 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=41.0
Q ss_pred CcccEEEEeCCCCCC--------CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPGM--------TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~~--------~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..+|+|.+.-..|.. .|++.++++++.. +++||++..+- +.+.+.++++.|++.+.
T Consensus 123 ~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 123 AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGI-TPENAPEVLEAGADGVA 186 (212)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 468999887545432 3588899988743 34888877665 67888899999998875
No 114
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=90.27 E-value=4.8 Score=28.39 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=51.6
Q ss_pred HHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-------CHHHHHHHHHhccCCCCCc
Q 042079 38 NLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-------TGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 38 ~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-------~g~~~~~~lr~~~~~~~~p 110 (153)
..+....+.-.++++..++.... ...+|.+++.--.|.. -|++.++++.+.. ++|
T Consensus 90 ~~~~~~~~ig~S~h~~~e~~~a~---------------~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~p 151 (180)
T PF02581_consen 90 KLLGPDKIIGASCHSLEEAREAE---------------ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIP 151 (180)
T ss_dssp HHHTTTSEEEEEESSHHHHHHHH---------------HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSC
T ss_pred hhcccceEEEeecCcHHHHHHhh---------------hcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCC
Confidence 33433334455788888865544 2457999998765443 3888888887653 589
Q ss_pred EEEEeCCCChhhHHHHHHhcCccc
Q 042079 111 VVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
++++.+- +.+...++.+.|++++
T Consensus 152 v~AlGGI-~~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 152 VYALGGI-TPENIPELREAGADGV 174 (180)
T ss_dssp EEEESS---TTTHHHHHHTT-SEE
T ss_pred EEEEcCC-CHHHHHHHHHcCCCEE
Confidence 9988875 5666778899999875
No 115
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.26 E-value=4.4 Score=27.81 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=73.3
Q ss_pred CCCeEEE----EeCCHHHHHHHHHHHHhcCcEEEE---ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-
Q 042079 19 KPPHVLA----VDDSIVDRKIVENLLKNSACKVTT---AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG- 90 (153)
Q Consensus 19 ~~~~iLi----idd~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~- 90 (153)
..++|++ .|.|..-.+.+.+.|+..|++|.. ..+..|++...- .+..|+|.+......
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~--------------~~dv~vIgvSsl~g~h 76 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV--------------EEDVDVIGVSSLDGGH 76 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH--------------hcCCCEEEEEeccchH
Confidence 3455555 477888889999999999998764 667788777652 245788876543322
Q ss_pred -CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHH
Q 042079 91 -MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVK 145 (153)
Q Consensus 91 -~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~ 145 (153)
....++++.+|+... .++. ++..+.-.++...+..+.|++.++.--....+..
T Consensus 77 ~~l~~~lve~lre~G~-~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~ 130 (143)
T COG2185 77 LTLVPGLVEALREAGV-EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEAL 130 (143)
T ss_pred HHHHHHHHHHHHHhCC-cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHH
Confidence 134556677787653 3333 3445444566677788899999986655555544
No 116
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.24 E-value=1.2 Score=33.48 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=39.4
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..+++++.+|+.. .++|+++++-.+. +....++.+.|++.++......++..+.+..+
T Consensus 73 ~~~~~v~~ir~~~--~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKH--PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 3456677776532 3678777766544 56677888889988888777777776665543
No 117
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.90 E-value=1.4 Score=32.90 Aligned_cols=57 Identities=19% Similarity=0.389 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++++++.+|+.. ++|+++++..+. +.....+.+.|++..+.-.+.++++.+++.++
T Consensus 63 ~~~~~~~~vr~~~---~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 63 DVLELVKEIRKKN---TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHHhhcC---CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 3566777777542 578777766432 55677788899998888666677776666554
No 118
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.64 E-value=2.1 Score=32.88 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=58.1
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.|||-|+|......+...++ ..+ .....+++.+++.+.+. ..+|+|++|- |+...--+
T Consensus 172 ~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~---------------~gaDiI~LDn-m~~e~vk~ 235 (289)
T PRK07896 172 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLA---------------EGAELVLLDN-FPVWQTQE 235 (289)
T ss_pred eeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHH---------------cCCCEEEeCC-CCHHHHHH
Confidence 47777777655433333333 222 23556788899888872 4589999993 33323333
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.++.++... +++ .+..++.-+.+.+.+....|+|-+
T Consensus 236 av~~~~~~~--~~v-~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 236 AVQRRDARA--PTV-LLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred HHHHHhccC--CCE-EEEEECCCCHHHHHHHHhcCCCEE
Confidence 444444332 333 566777778888888888998765
No 119
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=89.53 E-value=3.1 Score=31.78 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=59.8
Q ss_pred eEEEEeCCHHHHH---HHHHHHH---hc---CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 22 HVLAVDDSIVDRK---IVENLLK---NS---ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 22 ~iLiidd~~~~~~---~l~~~l~---~~---~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
.|||-|+|..... .+...++ +. ......+.+.+++.+.+. ..+|+|++| .|+..+
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~---------------~GaDiI~lD-n~~~e~ 221 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQ---------------ASPDILQLD-KFTPQQ 221 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHH---------------cCcCEEEEC-CCCHHH
Confidence 4778888766543 3333332 21 123456778888888772 458999999 344444
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
-.+.++.+++.. ++ ..+..++.-+.+.+.+....|+|-+.
T Consensus 222 l~~~v~~l~~~~--~~-~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 222 LHHLHERLKFFD--HI-PTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred HHHHHHHHhccC--CC-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 455555555322 23 35667777788888888889987653
No 120
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=88.74 E-value=8.5 Score=29.14 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=53.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHh
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKE 102 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~ 102 (153)
|-+.-.++.....+.++|....|.+..+.+..+.++.+.. .++.+|++++...... ..++..|.+
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~------------~~e~iDCLvle~~~~~---~~~~~~L~e 67 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQ------------HREQIDCLVLEQSPLL---PPLFNQLYE 67 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCC------------TTTT-SEEEEETTSTT---HHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHh------------chhccCEEEEecCCCc---HHHHHHHHH
Confidence 4455567778888999998888999999999998888842 4568999999876554 567788887
Q ss_pred ccCCCCCcEEEEeC
Q 042079 103 SSVMKEVPVVVVSS 116 (153)
Q Consensus 103 ~~~~~~~pii~~t~ 116 (153)
.+. -.|+|++..
T Consensus 68 ~g~--LLPaVil~~ 79 (283)
T PF07688_consen 68 QGI--LLPAVILGS 79 (283)
T ss_dssp CT------EEEES-
T ss_pred cCc--cccEEEEec
Confidence 653 468888866
No 121
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=88.45 E-value=7.1 Score=27.69 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=39.0
Q ss_pred CcccEEEEeCCCCC--------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPG--------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~--------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..+|++.++-..+. ..|++.++++.+.. +++|++++.+- +.+...++.+.|++.+
T Consensus 115 ~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 115 EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 46899987654442 23788888887532 35888877655 5777888889998775
No 122
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=88.43 E-value=5.3 Score=26.28 Aligned_cols=103 Identities=21% Similarity=0.142 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCcEEEEec--CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCC
Q 042079 33 RKIVENLLKNSACKVTTAE--NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-TGYELLKKIKESSVMKEV 109 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~ 109 (153)
...+..++++.|+.+.... ...+.++.+. ....||+|.+.+..+.. ....+++.+|+.. +++
T Consensus 5 l~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~-------------~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~ 69 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIK-------------ELLKPDVVGISLMTSAIYEALELAKIAKEVL--PNV 69 (127)
T ss_pred HHHHHHHHHHCCCeeeecCCCCHHHHHHHHH-------------HhcCCCEEEEeeccccHHHHHHHHHHHHHHC--CCC
Confidence 3456777888787655433 3333344331 11579999999865554 4677888888865 466
Q ss_pred cEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 110 PVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 110 pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++++-....+ ......+.....||+.+=--..-+.++++++
T Consensus 70 ~iv~GG~~~t-~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 70 IVVVGGPHAT-FFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred EEEECCcchh-hCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 6654433322 2223323333345655432233444555443
No 123
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.27 E-value=9.3 Score=27.77 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=51.9
Q ss_pred HHHHHh-cCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC-------CCCCCHHHHHHHHHhccCCC
Q 042079 37 ENLLKN-SACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC-------MPGMTGYELLKKIKESSVMK 107 (153)
Q Consensus 37 ~~~l~~-~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~-------~~~~~g~~~~~~lr~~~~~~ 107 (153)
....++ .+..+ ..+.+.+++.... ...+|++.+... ......+++++++++..
T Consensus 111 i~~~~~~~~i~vi~~v~t~ee~~~a~---------------~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--- 172 (221)
T PRK01130 111 VKRIKEYPGQLLMADCSTLEEGLAAQ---------------KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--- 172 (221)
T ss_pred HHHHHhCCCCeEEEeCCCHHHHHHHH---------------HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---
Confidence 333444 44433 3456666664433 235788865321 11223478888888743
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++|++...+-.+.+.+.++++.|++.++.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 68998877777889999999999988643
No 124
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=87.19 E-value=1.7 Score=30.94 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=46.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC--CCCCHHHHHHHH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM--PGMTGYELLKKI 100 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~--~~~~g~~~~~~l 100 (153)
||+||....+-..+.++|++.|+.+..+.+....++.+. ...||.||+--.. |...+. ..+.+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~--------------~~~~d~iils~GPg~p~~~~~-~~~~~ 66 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID--------------ALKPQKIVISPGPCTPDEAGI-SLDVI 66 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH--------------hcCCCEEEEcCCCCChHHCCc-cHHHH
Confidence 899999999999999999998888777665432222221 1247888875433 222222 12223
Q ss_pred HhccCCCCCcEEEEe
Q 042079 101 KESSVMKEVPVVVVS 115 (153)
Q Consensus 101 r~~~~~~~~pii~~t 115 (153)
+.. ...+|++-+.
T Consensus 67 ~~~--~~~~PiLGIC 79 (187)
T PRK08007 67 RHY--AGRLPILGVC 79 (187)
T ss_pred HHh--cCCCCEEEEC
Confidence 321 1467987776
No 125
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.18 E-value=4.8 Score=30.96 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=57.4
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcC--cE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSA--CK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~--~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.|||-|+|......+...+. ..+ .. -..+++.+|+.+.+. ..+|+|.+|- |+...--
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~---------------~GaD~I~LDn-~~~e~l~ 231 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE---------------YGADIIMLDN-MPVDLMQ 231 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH---------------cCCCEEEECC-CCHHHHH
Confidence 58888888665543444332 233 22 346788999988772 4689999993 3222223
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.++.++... +++|+. .++.-+.+.+.+....|+|.+
T Consensus 232 ~av~~~~~~~--~~i~le-AsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 232 QAVQLIRQQN--PRVKIE-ASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred HHHHHHHhcC--CCeEEE-EECCCCHHHHHHHHHcCCCEE
Confidence 3344444322 455544 555567888888889998865
No 126
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=87.16 E-value=12 Score=28.94 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=54.9
Q ss_pred HHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC-----CCCCCHHHHHHHHHhccCCCCC
Q 042079 36 VENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC-----MPGMTGYELLKKIKESSVMKEV 109 (153)
Q Consensus 36 l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~-----~~~~~g~~~~~~lr~~~~~~~~ 109 (153)
+-..++..|..+. .+.+..++.... ...+|.|++.-. ......+.+++++++.. ++
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~---------------~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~---~i 162 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRME---------------KAGADAVIAEGMESGGHIGELTTMALVPQVVDAV---SI 162 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHH---------------HcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh---CC
Confidence 3344555666543 466777665544 235899987432 12234588888888643 68
Q ss_pred cEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 110 PVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 110 pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
|||.-.+-.+...+.+++..|++...
T Consensus 163 PviaaGGI~~~~~~~~al~~GA~gV~ 188 (307)
T TIGR03151 163 PVIAAGGIADGRGMAAAFALGAEAVQ 188 (307)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEee
Confidence 99887777788889999999998764
No 127
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.74 E-value=2.1 Score=32.43 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++++++|+. .++|+++++-.+. +....+|.+.|++.++.-.+.+++..+....+
T Consensus 79 ~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 79 ILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 46667777642 4789888877542 45578888999999999888888877766544
No 128
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=86.67 E-value=6.7 Score=26.73 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=44.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec----CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE----NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~----~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
.+..++.|++.+....+-+..+|.+.|..+..++ +..++++ ..|+|++-..-+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~-------------------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH-------------------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh-------------------hCCEEEEecCCCC
Confidence 4678999999999999999999999999999888 4444333 3699999887664
No 129
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=86.48 E-value=9.3 Score=27.04 Aligned_cols=102 Identities=8% Similarity=0.068 Sum_probs=56.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc-EEEEe-cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC-KVTTA-ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..++..+|-++.....++...++.++ .+... .+..+ + . ...+||+|+++. +.. -.++
T Consensus 65 ~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~--~--------------~~~~fD~I~s~~-~~~--~~~~ 124 (181)
T TIGR00138 65 PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-F--Q--------------HEEQFDVITSRA-LAS--LNVL 124 (181)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-c--c--------------ccCCccEEEehh-hhC--HHHH
Confidence 346799999999888777777776654 23322 23222 1 1 124799999986 322 2344
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHH----hcCcccccCCCCh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLE----EGAQMFMLKPLKP 141 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~----~ga~~~l~KP~~~ 141 (153)
++.+.+. ..+...+++.-..........+.+ .|..-.=.||++.
T Consensus 125 ~~~~~~~-LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 125 LELTLNL-LKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred HHHHHHh-cCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 5555432 224555666655555555444433 3555444455543
No 130
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.24 E-value=4.8 Score=28.65 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=48.3
Q ss_pred EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHH
Q 042079 48 TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECL 127 (153)
Q Consensus 48 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~ 127 (153)
..+.+.+|+.... ...+|+|-++-. +. .|.++++.++.. .+++|++.+.+- +.+...+.+
T Consensus 102 ~gv~t~~e~~~A~---------------~~Gad~i~~~p~-~~-~g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~ 161 (190)
T cd00452 102 PGVATPTEIMQAL---------------ELGADIVKLFPA-EA-VGPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWL 161 (190)
T ss_pred CCcCCHHHHHHHH---------------HCCCCEEEEcCC-cc-cCHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHH
Confidence 3566888877765 245899987532 22 389999999863 246888866665 788889999
Q ss_pred HhcCccc
Q 042079 128 EEGAQMF 134 (153)
Q Consensus 128 ~~ga~~~ 134 (153)
+.|++.+
T Consensus 162 ~~G~~~v 168 (190)
T cd00452 162 AAGVVAV 168 (190)
T ss_pred HCCCEEE
Confidence 9998775
No 131
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=85.43 E-value=6.9 Score=25.31 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=46.7
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-CHHHHHHHHHh
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-TGYELLKKIKE 102 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-~g~~~~~~lr~ 102 (153)
+.++.....+..++++.|+++.... ...+.++.+ ...+||+|.+.+..... .....+..+++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i--------------~~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA--------------KEEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH--------------HHcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 4566667788888999999887654 333344433 13579999998877654 34555666666
Q ss_pred ccCCC-CCcEEEEe
Q 042079 103 SSVMK-EVPVVVVS 115 (153)
Q Consensus 103 ~~~~~-~~pii~~t 115 (153)
.. + ++++++-.
T Consensus 76 ~~--p~~~~ivvGG 87 (125)
T cd02065 76 EL--GIDIPVVVGG 87 (125)
T ss_pred hc--CCCCeEEEeC
Confidence 44 3 56665443
No 132
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.27 E-value=11 Score=31.88 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=35.9
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+.+++++-...+. ....++...|+.. ++.+|++-+. +.+......+.|++..+.
T Consensus 463 ~~A~~vv~~~~d~~-~n~~i~~~~r~~~--p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 463 EKAEAIVITCNEPE-DTMKIVELCQQHF--PHLHILARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred ccCCEEEEEeCCHH-HHHHHHHHHHHHC--CCCeEEEEeC--CHHHHHHHHhCCCCEEEc
Confidence 34666666544432 3455666777654 6778876663 567777888999997753
No 133
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=85.26 E-value=11 Score=26.78 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=47.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
.+++|+.+++..+..++.+++.+| |.+....+..++++... . ....+.+++.+....+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k-~-----------~G~vvhLtmyga~~~~ 91 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWK-D-----------GGIVVHLTMYGENIQD 91 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHH-h-----------CCcEEEEEEecCCccc
Confidence 578999999999999999999876 67899999999988773 1 2456888888877765
No 134
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=85.03 E-value=4.9 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=25.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecC
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
||+||....+...+..+|++.|+.+....+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~ 31 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRN 31 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEEC
Confidence 899999999999999999988888776653
No 135
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.90 E-value=13 Score=28.35 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcCc---EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSAC---KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~~---~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.|||-|+|......+...++ ..+. ....+++.+++.+.+. ..+|+|++|-..| ..--
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~---------------~GaDiI~LDn~~~-e~l~ 217 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMN---------------AGADIVMCDNMSV-EEIK 217 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHH---------------cCCCEEEECCCCH-HHHH
Confidence 47777777665544444443 2332 2446889999988773 4589999885211 1112
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
+.++.++.. .+++ .+..++.-+++.+.+..+.|+|.+.
T Consensus 218 ~~v~~~~~~--~~~~-~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 218 EVVAYRNAN--YPHV-LLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred HHHHHhhcc--CCCe-EEEEECCCCHHHHHHHHHcCCCEEE
Confidence 222222211 1333 4556666788999999999998653
No 136
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=84.85 E-value=7.9 Score=27.56 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=43.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcE---EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH---H
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACK---VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG---Y 94 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~---v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g---~ 94 (153)
.++..||.++.....++.-++..+.. .....+...++..... ...+||+|++| .|-..+ .
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~------------~~~~fDiIflD--PPY~~~~~~~ 131 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK------------KGEKFDIIFLD--PPYAKGLYYE 131 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH------------CTS-EEEEEE----STTSCHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc------------cCCCceEEEEC--CCcccchHHH
Confidence 57999999999999999888876632 3345565555554411 24679999999 344333 4
Q ss_pred HHHHHHHhcc
Q 042079 95 ELLKKIKESS 104 (153)
Q Consensus 95 ~~~~~lr~~~ 104 (153)
++++.|.+..
T Consensus 132 ~~l~~l~~~~ 141 (183)
T PF03602_consen 132 ELLELLAENN 141 (183)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 5777776433
No 137
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=84.73 E-value=12 Score=28.39 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=56.7
Q ss_pred EEEEeCCHHHHHH------HHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 23 VLAVDDSIVDRKI------VENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 23 iLiidd~~~~~~~------l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
|||-|+|...... +...-+..+ .....+++..++.+.+. ..+|+|.+|-..|. +--
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~---------------~gaD~I~ld~~~p~-~l~ 218 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAE---------------AGADILQLDKFSPE-ELA 218 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHH---------------cCCCEEEECCCCHH-HHH
Confidence 7888877544322 222221111 23456888888877652 45799999965443 223
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
++++.++... +++|+++.. .-+.+.+.+..+.|++.+.
T Consensus 219 ~~~~~~~~~~--~~i~i~AsG-GI~~~ni~~~~~~Gvd~I~ 256 (272)
T cd01573 219 ELVPKLRSLA--PPVLLAAAG-GINIENAAAYAAAGADILV 256 (272)
T ss_pred HHHHHHhccC--CCceEEEEC-CCCHHHHHHHHHcCCcEEE
Confidence 4444454321 467776554 4577888899999998764
No 138
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.63 E-value=16 Score=27.99 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=60.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh---cC---cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 23 VLAVDDSIVDRKIVENLLKN---SA---CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~---~~---~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
|||-|+|.... .+...++. .. .....+++..++.+.+. ..+|+|++|-..|. .--+.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~---------------agaDiI~LDn~~~e-~l~~~ 219 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK---------------AGADIIMLDNMTPE-EIREV 219 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH---------------cCcCEEEECCCCHH-HHHHH
Confidence 89999997665 45554442 11 12446889999888773 45899999965433 33344
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+.++.....++ ..+..++.-+.+.+.+..+.|+|-+
T Consensus 220 v~~l~~~~~~~~-~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 220 IEALKREGLRER-VKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred HHHHHhcCcCCC-EEEEEECCCCHHHHHHHHHcCCCEE
Confidence 444554321123 3566677778888888889998765
No 139
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=84.26 E-value=22 Score=29.37 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcC-cEEEEecCH------HHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-CHHHHHHHH
Q 042079 29 SIVDRKIVENLLKNSA-CKVTTAENG------MRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-TGYELLKKI 100 (153)
Q Consensus 29 ~~~~~~~l~~~l~~~~-~~v~~~~~~------~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-~g~~~~~~l 100 (153)
.|.-...+...|++.| ++|...+.. .+..+.+ ....||+|.+....+.. ...++++.+
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l--------------~~~~pdvVgis~~t~~~~~a~~~~~~~ 86 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERL--------------RAHCPDLVLITAITPAIYIACETLKFA 86 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHH--------------HhcCcCEEEEecCcccHHHHHHHHHHH
Confidence 4555667888898888 577665422 1222222 13569999997655543 356777778
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHH-hcCcccccCCCChhHHHHHHhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLE-EGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~-~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
|+.. ++++|| +.+........+++. ....||+..==-..-+.++++.
T Consensus 87 k~~~--P~~~iV-~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~ 134 (497)
T TIGR02026 87 RERL--PNAIIV-LGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAA 134 (497)
T ss_pred HHHC--CCCEEE-EcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHH
Confidence 8754 566665 444322223344554 3334565553333444455544
No 140
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=84.19 E-value=14 Score=26.91 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=47.0
Q ss_pred CCcccEEEEeCCCCC---------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH---HHHhcCcccc-cCCCChh
Q 042079 76 GTKVNLVITDYCMPG---------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE---CLEEGAQMFM-LKPLKPS 142 (153)
Q Consensus 76 ~~~~dlii~D~~~~~---------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~---a~~~ga~~~l-~KP~~~~ 142 (153)
...+|.|++|+.-.. .+-.++++.++.... ....+++=.+..+.....+ +++.|++.++ .|=-+.+
T Consensus 19 ~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~-~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~ves~~ 97 (221)
T PF03328_consen 19 ASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA-AGSEIIVRVNSLDSPHIERDLEALDAGADGIVLPKVESAE 97 (221)
T ss_dssp TTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT-SSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT--SHH
T ss_pred hcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc-ccccceecCCCCCcchhhhhhhhcccCCCeeeccccCcHH
Confidence 357999999998876 444555555554221 2345665566556556666 8999999864 4445677
Q ss_pred HHHHHHhhh
Q 042079 143 DVKKLTGHL 151 (153)
Q Consensus 143 ~l~~~~~~~ 151 (153)
+++++...+
T Consensus 98 ~~~~~~~~~ 106 (221)
T PF03328_consen 98 DARQAVAAL 106 (221)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 141
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=84.18 E-value=6 Score=28.66 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=39.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 82 VITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 82 ii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
=++++.+...++++.++.+++.. +++ +|-...-.+.+...+|.+.|++ |+..|....++.+..
T Consensus 35 ~~iEiT~~t~~a~~~I~~l~~~~--p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 35 RAIEITLRTPNALEAIEALRKEF--PDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIEYA 97 (196)
T ss_dssp -EEEEETTSTTHHHHHHHHHHHH--TTS-EEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHC--CCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 34566666677899999888754 443 4444445578888899999997 777776666665443
No 142
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=84.13 E-value=7.2 Score=29.88 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=32.4
Q ss_pred CHHHHHHHHHhccCCCCCcEE--EEeCCCChhhHHHHHHhcCcccc
Q 042079 92 TGYELLKKIKESSVMKEVPVV--VVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii--~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.++++++.+++.. .+|+| ....-.+++....+++.|++.++
T Consensus 181 ~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVa 223 (283)
T cd04727 181 APYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVF 223 (283)
T ss_pred CCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4788899988743 58997 55555589999999999998874
No 143
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=83.59 E-value=15 Score=26.91 Aligned_cols=68 Identities=26% Similarity=0.268 Sum_probs=50.0
Q ss_pred EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-------CCCHHHHHHHHHhccCCCCCcEEEEeCCCCh
Q 042079 48 TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-------GMTGYELLKKIKESSVMKEVPVVVVSSENIP 120 (153)
Q Consensus 48 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 120 (153)
.++++.+++.+... ..+|.|.+.--.| ...|++.++++++.. .+|++.+.+- +.
T Consensus 109 ~S~h~~eea~~A~~---------------~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~ 169 (211)
T COG0352 109 LSTHDLEEALEAEE---------------LGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NL 169 (211)
T ss_pred eecCCHHHHHHHHh---------------cCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CH
Confidence 35667777766542 3489999875443 346899999998753 4899988875 67
Q ss_pred hhHHHHHHhcCccc
Q 042079 121 TRINECLEEGAQMF 134 (153)
Q Consensus 121 ~~~~~a~~~ga~~~ 134 (153)
+.+.+.++.|++..
T Consensus 170 ~nv~~v~~~Ga~gV 183 (211)
T COG0352 170 ENVPEVLEAGADGV 183 (211)
T ss_pred HHHHHHHHhCCCeE
Confidence 77889999998764
No 144
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=83.32 E-value=1.8 Score=31.11 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=27.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
||+||.+..+-..+..+|++.|+++......
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~ 32 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRND 32 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCC
Confidence 8999999999999999999999888777655
No 145
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.22 E-value=5.1 Score=32.31 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=42.3
Q ss_pred CcccEEEEeCCCCC-CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPG-MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~-~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..+|+|.+|...+. ..-.++++++|+.. +++++| +..-.+.+....+.+.|+|...
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~--p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKY--PNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhC--CCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 46899999998874 45678899998754 566644 5455678888899999998764
No 146
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.00 E-value=5.4 Score=30.27 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=35.1
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHH
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKK 146 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~ 146 (153)
+-+++++.+|+.. ..+|+++++-.+. +....++.+.|++++|.-.+.+++-.+
T Consensus 80 ~~lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~ 138 (265)
T COG0159 80 DTLELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDE 138 (265)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHH
Confidence 3456666677544 5788888876542 334567788888888887666666544
No 147
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=82.91 E-value=3.4 Score=29.40 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=27.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
||+||....+-..+..+|+..|+++..+.+.
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~ 32 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRND 32 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCC
Confidence 8999999999999999999989888877754
No 148
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=82.87 E-value=11 Score=29.29 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=46.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc--CcE----EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS--ACK----VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~--~~~----v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
-.|++++-+....+.-.+++... ||+ .....++...++.+ ...++|+||+|.+-|.+.+.
T Consensus 146 e~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~--------------~~~~~dVii~dssdpvgpa~ 211 (337)
T KOG1562|consen 146 ENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL--------------KENPFDVIITDSSDPVGPAC 211 (337)
T ss_pred cceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh--------------ccCCceEEEEecCCccchHH
Confidence 46899999988888877777753 442 23444777666655 24679999999999998887
Q ss_pred HHHH
Q 042079 95 ELLK 98 (153)
Q Consensus 95 ~~~~ 98 (153)
.+..
T Consensus 212 ~lf~ 215 (337)
T KOG1562|consen 212 ALFQ 215 (337)
T ss_pred HHHH
Confidence 6554
No 149
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=82.73 E-value=14 Score=25.99 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=60.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh----cC--c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKN----SA--C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~----~~--~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
..+||-|+|......+...++. .+ . ....+++.+++.+.+. ..+|+|++|-..| .+-
T Consensus 51 d~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~---------------~g~d~I~lD~~~~-~~~ 114 (169)
T PF01729_consen 51 DMILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALE---------------AGADIIMLDNMSP-EDL 114 (169)
T ss_dssp SSEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH---------------TT-SEEEEES-CH-HHH
T ss_pred CcEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH---------------hCCCEEEecCcCH-HHH
Confidence 3478888887766545544432 22 2 3456888888888773 4589999997544 233
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
-++++.++... ++ ..|.+++.-+.+.+.+..+.|+|.+
T Consensus 115 ~~~v~~l~~~~--~~-v~ie~SGGI~~~ni~~ya~~gvD~i 152 (169)
T PF01729_consen 115 KEAVEELRELN--PR-VKIEASGGITLENIAEYAKTGVDVI 152 (169)
T ss_dssp HHHHHHHHHHT--TT-SEEEEESSSSTTTHHHHHHTT-SEE
T ss_pred HHHHHHHhhcC--Cc-EEEEEECCCCHHHHHHHHhcCCCEE
Confidence 44555555543 34 5667888788888888889998765
No 150
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=82.55 E-value=4.8 Score=29.46 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=33.8
Q ss_pred CCCcEEEEeCCC------ChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 107 KEVPVVVVSSEN------IPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 107 ~~~pii~~t~~~------~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
-.+|||+++-+. ....++.+.+.|+++|+.-.+.++|-..+=+
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rn 142 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRN 142 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHH
Confidence 468999987653 4667788999999999999888888765433
No 151
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.13 E-value=11 Score=27.33 Aligned_cols=61 Identities=8% Similarity=0.231 Sum_probs=33.7
Q ss_pred EEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHH
Q 042079 83 ITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKL 147 (153)
Q Consensus 83 i~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~ 147 (153)
.+++.+.....++.++++++.. ++ -+|=...-.+.+...++.+.|++ |+..|....++.+.
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~--~~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~ 92 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEV--EE-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAA 92 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHC--CC-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 3444445555677777776543 23 12223333456666777777776 66666555555443
No 152
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=82.05 E-value=17 Score=26.39 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=48.1
Q ss_pred EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC-------CCCCCHHHHHHHHHhccCCCCCcEEEEeCCCCh
Q 042079 48 TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC-------MPGMTGYELLKKIKESSVMKEVPVVVVSSENIP 120 (153)
Q Consensus 48 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~-------~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 120 (153)
..+.+..++.... ...+|++.+... ......++.++.+++.. ++|++...+-.+.
T Consensus 128 v~v~t~~ea~~a~---------------~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~~~ 189 (219)
T cd04729 128 ADISTLEEALNAA---------------KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRINSP 189 (219)
T ss_pred EECCCHHHHHHHH---------------HcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCCCH
Confidence 3556677765544 235788765321 11223578889888743 6899887777788
Q ss_pred hhHHHHHHhcCccccc
Q 042079 121 TRINECLEEGAQMFML 136 (153)
Q Consensus 121 ~~~~~a~~~ga~~~l~ 136 (153)
+...++++.|++.++.
T Consensus 190 ~~~~~~l~~GadgV~v 205 (219)
T cd04729 190 EQAAKALELGADAVVV 205 (219)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999988754
No 153
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=81.94 E-value=9.1 Score=29.39 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhccCCCCCcEE--EEeCCCChhhHHHHHHhcCcccc-----cCCCChhHHH
Q 042079 92 TGYELLKKIKESSVMKEVPVV--VVSSENIPTRINECLEEGAQMFM-----LKPLKPSDVK 145 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii--~~t~~~~~~~~~~a~~~ga~~~l-----~KP~~~~~l~ 145 (153)
.++++++++++.. .+|+| ...+-.+++....+++.|++.++ .|.-++.+..
T Consensus 184 ~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~a 241 (287)
T TIGR00343 184 VPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLA 241 (287)
T ss_pred CCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHH
Confidence 5789999988743 68998 55555689999999999998873 3433455543
No 154
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.94 E-value=5.1 Score=31.36 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=40.9
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+|+|.+|+..+.. ...+++++||+.. +.+|+|. ..-.+.+....+.+.|++...
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~~~--p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKKHL--PETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHhhC--CCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 35999999988754 4678899998754 4566654 223477888899999999864
No 155
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=81.80 E-value=11 Score=29.03 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=58.1
Q ss_pred eEEEEeCCHHHHH-------HHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 22 HVLAVDDSIVDRK-------IVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 22 ~iLiidd~~~~~~-------~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
.+||-|+|..... .++.+-+..+ .....+.+.+++.+.+. ..+|+|++|- |+...
T Consensus 159 ~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~---------------agaDiI~LDn-~~~e~ 222 (284)
T PRK06096 159 TILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALR---------------AQPDVLQLDK-FSPQQ 222 (284)
T ss_pred hhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHH---------------cCCCEEEECC-CCHHH
Confidence 3677777765443 2222222222 23456789999888873 4589999994 43333
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
--+..+.+++.. ++ ..+-.++.-+.+.+.+....|+|-+.
T Consensus 223 l~~av~~~~~~~--~~-~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 223 ATEIAQIAPSLA--PH-CTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred HHHHHHHhhccC--CC-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 344455554322 23 35667777788888888889987653
No 156
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=81.19 E-value=3.6 Score=31.10 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
.+++++++|+.. .++|+++++-.+. +....+|.+.|+++++.-.+.+++-.+...
T Consensus 74 ~~~~~~~ir~~~--~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKE--PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHC--TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHhccC--CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 466777888433 5889999987432 345677888999999998877776655443
No 157
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=81.11 E-value=23 Score=28.46 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=41.5
Q ss_pred cccEEEEeCCCCCC----CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 78 KVNLVITDYCMPGM----TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 78 ~~dlii~D~~~~~~----~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+|+|++....... ...+.++++++.. +..+|| +++........++.+....+++..+-....+.+++..
T Consensus 33 ~aD~v~intctv~~~a~~~~~~~i~~~k~~~--p~~~vv-vgGc~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~ 106 (414)
T TIGR01579 33 KADVYIINTCTVTAKADSKARRAIRRARRQN--PTAKII-VTGCYAQSNPKELADLKDVDLVLGNKEKDKINKLLSL 106 (414)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHHHhhC--CCcEEE-EECCccccCHHHHhcCCCCcEEECCCCHHHHHHHHHH
Confidence 47999998655443 3677788887643 455554 5443333333444455455677777666666666543
No 158
>PLN02335 anthranilate synthase
Probab=80.96 E-value=12 Score=27.46 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=47.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC--CCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM--PGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~--~~~~g~~~ 96 (153)
.+.+||+||........+.++|++.|+.+..+......++.+. ...||.||+--.. |...+ ..
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~--------------~~~~d~iVisgGPg~p~d~~-~~ 81 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK--------------RKNPRGVLISPGPGTPQDSG-IS 81 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH--------------hcCCCEEEEcCCCCChhhcc-ch
Confidence 4568999998777778889999988987776654211122121 1246777764322 22122 12
Q ss_pred HHHHHhccCCCCCcEEEEeC
Q 042079 97 LKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~ 116 (153)
.+.++... ..+|++-+.-
T Consensus 82 ~~~~~~~~--~~~PiLGICl 99 (222)
T PLN02335 82 LQTVLELG--PLVPLFGVCM 99 (222)
T ss_pred HHHHHHhC--CCCCEEEecH
Confidence 44444322 3679877763
No 159
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.49 E-value=21 Score=33.08 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=58.7
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
..+|++. |-|..=.+.+..+|+..||+|.-.. ..++.++.+ ..+++|+|.+...|...
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa--------------~e~~~diVgLS~L~t~s~ 816 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETA--------------KEENADIIGLSGLITPSL 816 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH--------------HHhCCCEEEEcCcchhhH
Confidence 4567777 7788878888888999999987544 334444444 24679999998877643
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCCh
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIP 120 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 120 (153)
...++++.|++.. ..+||++-.+..+.
T Consensus 817 ~~m~~~i~~L~~~g--~~v~v~vGGa~~s~ 844 (1229)
T PRK09490 817 DEMVHVAKEMERQG--FTIPLLIGGATTSK 844 (1229)
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEeeccch
Confidence 3566788888764 47787765554444
No 160
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=80.11 E-value=17 Score=25.25 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=39.5
Q ss_pred CcccEEEEeCCCCC--------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPG--------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~--------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..+|+|++....|. ..+++.++++++. .++|+++..+- +.+.+.++...|++.+.
T Consensus 114 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 114 LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 35899988754432 3467888888764 36888877665 56778889999998763
No 161
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=80.03 E-value=31 Score=31.91 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
..+|++. |-|.+=.+.+..+|+..||+|.-.. ..++.++.+ ..+++|+|-+...|...
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa--------------~e~~~diVgLS~Lmt~t~ 797 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAA--------------KDHNADVIGLSGLITPSL 797 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH--------------HHhCCCEEEEcCcccccH
Confidence 4567777 6677777888888999999987544 234444444 24679999998877643
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHH---HHhcCcccc
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIPTRINEC---LEEGAQMFM 135 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a---~~~ga~~~l 135 (153)
...+.++.|++.. .++||++=....+......- ...|++.|-
T Consensus 798 ~~m~~vi~~L~~~g--~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~ 843 (1178)
T TIGR02082 798 DEMKEVAEEMNRRG--ITIPLLIGGAATSKTHTAVKIAPIYKGPVVYV 843 (1178)
T ss_pred HHHHHHHHHHHhcC--CCceEEEeccccchhHHHhhhhhhccCCeEEe
Confidence 3466788888765 46777765555455544321 122777664
No 162
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=79.94 E-value=7.6 Score=32.30 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=40.1
Q ss_pred CcccEEEEeCCCCC-CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPG-MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~-~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...|+|.+|+.-.. ..-++++++||+.. +.+++| ..+-.+.+....+.+.|+|...
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~--p~~~vi-~g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTY--PELDVI-GGNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhC--CCCcEE-EecCCCHHHHHHHHHcCcCEEE
Confidence 46899999995322 23458999999754 455554 4445578888999999999874
No 163
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.67 E-value=22 Score=26.08 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEe
Q 042079 37 ENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 37 ~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t 115 (153)
...+.+.+. -+....+.++++....... ...+++| ++.+....+++.++.+++.. +++ +|-..
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~-----------~~Gi~~i--Eitl~~~~~~~~I~~l~~~~--p~~-~IGAG 72 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALV-----------AGGLPVL--EVTLRTPAALEAIRLIAKEV--PEA-LIGAG 72 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHH-----------HcCCCEE--EEecCCccHHHHHHHHHHHC--CCC-EEEEe
Confidence 344555554 4566777888877664321 2345544 44455557999999998754 442 33344
Q ss_pred CCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 116 SENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 116 ~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
.-.+.+....+++.|++ |+.-|....++.+..
T Consensus 73 TVl~~~~a~~a~~aGA~-FivsP~~~~~vi~~a 104 (212)
T PRK05718 73 TVLNPEQLAQAIEAGAQ-FIVSPGLTPPLLKAA 104 (212)
T ss_pred eccCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 44567888899999997 666775555655443
No 164
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=79.60 E-value=24 Score=26.58 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC-CC--CCCCHHHHHHHHHhccCCC
Q 042079 32 DRKIVENLLKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY-CM--PGMTGYELLKKIKESSVMK 107 (153)
Q Consensus 32 ~~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~-~~--~~~~g~~~~~~lr~~~~~~ 107 (153)
....+-...+..|..+ ..+.+..++.... ...+|+|-+.- .+ ...+ ++...++.+... .
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~---------------~~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p-~ 210 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERAL---------------KLGAPLIGINNRNLKTFEVD-LETTERLAPLIP-S 210 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH---------------HcCCCEEEECCCCcccccCC-HHHHHHHHHhCC-C
Confidence 3444444445567654 4677887775544 13578887642 11 1122 555666655321 2
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..++|..++-.+++.+.++.+.|++.++.
T Consensus 211 ~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 211 DRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 35888888888899999999999998743
No 165
>CHL00101 trpG anthranilate synthase component 2
Probab=79.46 E-value=7.2 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=26.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
|||||........+.+.|+..|+.+......
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~ 32 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRND 32 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECC
Confidence 8999999999999999999999887776643
No 166
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.08 E-value=28 Score=29.77 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=34.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+.+++++-...+.. ...++...|+.. ++.++++-+. +.+...+..+.|++...
T Consensus 463 ~~A~~vvv~~~d~~~-n~~i~~~ar~~~--p~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 463 AKAEVLINAIDDPQT-SLQLVELVKEHF--PHLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred CcCCEEEEEeCCHHH-HHHHHHHHHHhC--CCCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 456777766544333 355666667654 6778776663 56667778889998653
No 167
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=78.80 E-value=18 Score=26.38 Aligned_cols=85 Identities=12% Similarity=0.236 Sum_probs=48.7
Q ss_pred EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHH
Q 042079 47 VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINEC 126 (153)
Q Consensus 47 v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a 126 (153)
+....+.+++++...... ...++++=+. +...+.++.++++++.. +++ +|-...-.+.+...++
T Consensus 13 Vlr~~~~e~a~~~~~al~-----------~~Gi~~iEit--~~t~~a~~~i~~l~~~~--~~~-~vGAGTVl~~~~a~~a 76 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALI-----------EGGLRVLEVT--LRTPVALDAIRLLRKEV--PDA-LIGAGTVLNPEQLRQA 76 (204)
T ss_pred EEecCCHHHHHHHHHHHH-----------HcCCCEEEEe--CCCccHHHHHHHHHHHC--CCC-EEEEEeCCCHHHHHHH
Confidence 445556666655543221 2345544444 44456788888887643 343 2333334467777888
Q ss_pred HHhcCcccccCCCChhHHHHHH
Q 042079 127 LEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 127 ~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
.+.|++ |+..|....++.+..
T Consensus 77 ~~aGA~-FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 77 VDAGAQ-FIVSPGLTPELAKHA 97 (204)
T ss_pred HHcCCC-EEECCCCCHHHHHHH
Confidence 888887 666776655555443
No 168
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=78.74 E-value=11 Score=28.30 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCc
Q 042079 31 VDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 31 ~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~p 110 (153)
.....+.++.++.|.......-..+.++++. .+++-..-+...+.+-+.+++.+.+. ..|
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~----------------~~~~~~~KIaS~dl~n~~lL~~~A~t----gkP 115 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLE----------------ELGVPAYKIASGDLTNLPLLEYIAKT----GKP 115 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHH----------------HHT-SEEEE-GGGTT-HHHHHHHHTT-----S-
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHH----------------HcCCCEEEeccccccCHHHHHHHHHh----CCc
Confidence 3345566777778887776666677778773 24555666666677789999998874 469
Q ss_pred EEEEeCCCChhhHHHHHH
Q 042079 111 VVVVSSENIPTRINECLE 128 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~ 128 (153)
+|+-|+..+.+++.+|.+
T Consensus 116 vIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 116 VILSTGMSTLEEIERAVE 133 (241)
T ss_dssp EEEE-TT--HHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHH
Confidence 999998888777766543
No 169
>PRK07695 transcriptional regulator TenI; Provisional
Probab=78.37 E-value=22 Score=25.42 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=38.4
Q ss_pred CcccEEEEeCCCCC-------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPG-------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~-------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..+|.+++.-..+. ..|++.++++++. .++|++++.+- +.+...++...|++.+
T Consensus 114 ~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 114 NGADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 45788887643222 2367888888763 26899877765 7888899999998775
No 170
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=78.28 E-value=27 Score=26.98 Aligned_cols=64 Identities=11% Similarity=0.213 Sum_probs=39.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|+.++= +....-|..+++.+.- .+|+|. +.... ..+....|..+++..|-+.+++.+.+.+++
T Consensus 273 adi~v~p-S~~Eg~~~~~lEAma~-----G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~ 336 (374)
T TIGR03088 273 LDLFVLP-SLAEGISNTILEAMAS-----GLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYV 336 (374)
T ss_pred cCEEEec-cccccCchHHHHHHHc-----CCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4665532 2223345667776653 568875 33222 334556777889999999999988776653
No 171
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=78.17 E-value=17 Score=25.74 Aligned_cols=31 Identities=6% Similarity=0.112 Sum_probs=26.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
++|||||.....-..+..+|++.|+.+....
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6899999988888889999999998777665
No 172
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=78.16 E-value=35 Score=27.66 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=39.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh---cCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE---GAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~---ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|+.++=- ....-|..+++.+. ..+|+|..... . ..+.... |-.+++..|-+.+++.+.+.+++
T Consensus 332 aDv~V~pS-~~E~~g~~vlEAmA-----~G~PVI~s~~g-g---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll 398 (465)
T PLN02871 332 GDVFVMPS-ESETLGFVVLEAMA-----SGVPVVAARAG-G---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLL 398 (465)
T ss_pred CCEEEECC-cccccCcHHHHHHH-----cCCCEEEcCCC-C---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 46666422 22233555666654 25788743322 2 2334455 78899999999999988877764
No 173
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=77.96 E-value=18 Score=26.72 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=40.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
+.++.-+|-++...+..++.+++.|.. +..... .++++.+... ....||+||+|..-+.
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~-----------~~~~fDliFIDadK~~ 144 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL-----------LDGSFDLVFIDADKAD 144 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc-----------cCCCccEEEEeCChhh
Confidence 458999999999999999999998863 333331 2344444210 2467999999985543
No 174
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=77.90 E-value=23 Score=26.47 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=45.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-------CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCC-cccEEEEeCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-------ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGT-KVNLVITDYCMPG 90 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-------~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-~~dlii~D~~~~~ 90 (153)
+..+|-+||=|+...+..+.++... ..++ ...++...++.. .. +||+||+|...|.
T Consensus 99 ~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~---------------~~~~yDvIi~D~~dp~ 162 (246)
T PF01564_consen 99 PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKET---------------QEEKYDVIIVDLTDPD 162 (246)
T ss_dssp T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTS---------------SST-EEEEEEESSSTT
T ss_pred CcceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhc---------------cCCcccEEEEeCCCCC
Confidence 3467999999999999888887642 1233 566666655543 23 7999999998875
Q ss_pred CCH-----HHHHHHHHhc
Q 042079 91 MTG-----YELLKKIKES 103 (153)
Q Consensus 91 ~~g-----~~~~~~lr~~ 103 (153)
..+ .++.+.+++.
T Consensus 163 ~~~~~l~t~ef~~~~~~~ 180 (246)
T PF01564_consen 163 GPAPNLFTREFYQLCKRR 180 (246)
T ss_dssp SCGGGGSSHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHhh
Confidence 433 5777777653
No 175
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=77.88 E-value=3.9 Score=30.52 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=42.3
Q ss_pred EEEeCCCCCCCH-----HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc-----CCCChhHHHHHHhh
Q 042079 82 VITDYCMPGMTG-----YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML-----KPLKPSDVKKLTGH 150 (153)
Q Consensus 82 ii~D~~~~~~~g-----~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~-----KP~~~~~l~~~~~~ 150 (153)
.+|=+..|-.+| ...++.|++.. ++|+|+=++-..+++...|++.|++..|. +--++-.+.+.+.+
T Consensus 147 avMPlgsPIGSg~Gi~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~ 222 (247)
T PF05690_consen 147 AVMPLGSPIGSGRGIQNPYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKL 222 (247)
T ss_dssp EBEEBSSSTTT---SSTHHHHHHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHH
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHH
Confidence 445555564443 35677777643 79999999888999999999999999865 34455555554433
No 176
>PRK05637 anthranilate synthase component II; Provisional
Probab=77.87 E-value=22 Score=25.86 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=27.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
.+|++||....+...+...|+..|+.+..+...
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~ 34 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT 34 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC
Confidence 469999998888888999999988877766653
No 177
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=77.76 E-value=12 Score=26.90 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=54.2
Q ss_pred HHHHHHhcCcEEEEe--cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-----CCHHHHHHHHHhccCCCC
Q 042079 36 VENLLKNSACKVTTA--ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-----MTGYELLKKIKESSVMKE 108 (153)
Q Consensus 36 l~~~l~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-----~~g~~~~~~lr~~~~~~~ 108 (153)
.-..+++.|+.+..- ..+...++.+. ..+||.|-+|..+.. .....+++.+........
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~--------------~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 202 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLK--------------RLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLG 202 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHH--------------hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCC
Confidence 334456678877653 34444455552 346899999864421 233555555543221124
Q ss_pred CcEEEEeCCCChhhHHHHHHhcCc----ccccCCCChh
Q 042079 109 VPVVVVSSENIPTRINECLEEGAQ----MFMLKPLKPS 142 (153)
Q Consensus 109 ~pii~~t~~~~~~~~~~a~~~ga~----~~l~KP~~~~ 142 (153)
+++ ++++-.+......+.+.|++ .|+.||.+.+
T Consensus 203 ~~v-ia~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 203 LKV-VAEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred CeE-EEEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 444 46666778888888999983 3567787653
No 178
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=77.63 E-value=12 Score=30.52 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=41.8
Q ss_pred CcccEEEEeCCCCC-CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPG-MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~-~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..+|+|.+|..-.. ....++++++++.. +++|+++ ..-.+.+....+.+.|++.+
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~--~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTY--PDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhC--CCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 45899999986543 35778889998753 5788775 44557888889999999877
No 179
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=77.46 E-value=25 Score=25.56 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=46.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
+..+|.-+|-++......+..++..|+ .+. ...+..+.+..+.... ...+||+||+|..- .+-.+
T Consensus 69 ~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~----------~~~~fD~VFiDa~K--~~y~~ 136 (205)
T PF01596_consen 69 EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG----------EEGQFDFVFIDADK--RNYLE 136 (205)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT----------TTTSEEEEEEESTG--GGHHH
T ss_pred ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc----------CCCceeEEEEcccc--cchhh
Confidence 357899999999999999999998775 233 3455666665542110 12479999999842 23444
Q ss_pred HHHHHH
Q 042079 96 LLKKIK 101 (153)
Q Consensus 96 ~~~~lr 101 (153)
.++.+.
T Consensus 137 y~~~~~ 142 (205)
T PF01596_consen 137 YFEKAL 142 (205)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 454443
No 180
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.30 E-value=16 Score=23.26 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=54.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHH-HHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGM-RALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+.++|.++...+.+ +..|+.+...+... +.++.+. -...+.+++..... .....++..
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~--------------i~~a~~vv~~~~~d-~~n~~~~~~ 82 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAG--------------IEKADAVVILTDDD-EENLLIALL 82 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTT--------------GGCESEEEEESSSH-HHHHHHHHH
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcC--------------ccccCEEEEccCCH-HHHHHHHHH
Confidence 4688888888765433 34556665544332 2344431 23577888776432 334566667
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
+|+.. +..++++.+. +.+....+.+.|++..+
T Consensus 83 ~r~~~--~~~~ii~~~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 83 ARELN--PDIRIIARVN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp HHHHT--TTSEEEEEES--SHHHHHHHHHTT-SEEE
T ss_pred HHHHC--CCCeEEEEEC--CHHHHHHHHHCCcCEEE
Confidence 77644 4677776664 55666677788998765
No 181
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=77.02 E-value=31 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC-----cEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC-
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSA-----CKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT- 92 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~-----~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~- 92 (153)
..++.+||=|+...+..+++|-... -++ ....|+.+.++.. +.+||+||+|...|..-
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~---------------~~~fDvIi~D~tdp~gp~ 164 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC---------------EEKFDVIIVDSTDPVGPA 164 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC---------------CCcCCEEEEcCCCCCCcc
Confidence 4578888888888888888776543 122 2455555555433 34799999999888322
Q ss_pred ----HHHHHHHHHhc
Q 042079 93 ----GYELLKKIKES 103 (153)
Q Consensus 93 ----g~~~~~~lr~~ 103 (153)
..+|.+..++.
T Consensus 165 ~~Lft~eFy~~~~~~ 179 (282)
T COG0421 165 EALFTEEFYEGCRRA 179 (282)
T ss_pred cccCCHHHHHHHHHh
Confidence 46777777754
No 182
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=76.92 E-value=34 Score=27.08 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=47.3
Q ss_pred EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-------CCHHHHHHHHHhccCCCCCcEEEEeCCCCh
Q 042079 48 TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-------MTGYELLKKIKESSVMKEVPVVVVSSENIP 120 (153)
Q Consensus 48 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 120 (153)
.++++..++.... ...+|.|++.-..+. .-|++.++++.+. ..+|++++.+- +.
T Consensus 245 ~S~Hs~~e~~~A~---------------~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~---~~iPv~AiGGI-~~ 305 (347)
T PRK02615 245 RSTTNPEEMAKAI---------------AEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE---APIPWFAIGGI-DK 305 (347)
T ss_pred EecCCHHHHHHHH---------------HcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CH
Confidence 4566777665544 245899988654432 3478889988763 36899988765 56
Q ss_pred hhHHHHHHhcCccc
Q 042079 121 TRINECLEEGAQMF 134 (153)
Q Consensus 121 ~~~~~a~~~ga~~~ 134 (153)
+.+.++...|++.+
T Consensus 306 ~ni~~l~~~Ga~gV 319 (347)
T PRK02615 306 SNIPEVLQAGAKRV 319 (347)
T ss_pred HHHHHHHHcCCcEE
Confidence 77788889898765
No 183
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=76.64 E-value=17 Score=23.22 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=56.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHh-cCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKN-SACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~-~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
++.+|.-...-+..+..+... .++++. .++...+..+.... ...+. .+-| -- +.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~-------------~~~~~-~~~~-------~~---~l 57 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE-------------KYGIP-VYTD-------LE---EL 57 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH-------------HTTSE-EESS-------HH---HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH-------------Hhccc-chhH-------HH---HH
Confidence 577777776666666666665 455554 33333333332210 11223 3322 11 22
Q ss_pred HHhccCCCCCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHhh
Q 042079 100 IKESSVMKEVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTGH 150 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~~ 150 (153)
+... .+=+++++.+. ..+....+++.|.+-|+-||+ +.++.+++...
T Consensus 58 l~~~----~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 58 LADE----DVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEA 108 (120)
T ss_dssp HHHT----TESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhh----cCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHH
Confidence 2321 23344444433 366668899999999999998 88888877654
No 184
>PRK05670 anthranilate synthase component II; Provisional
Probab=76.61 E-value=11 Score=26.68 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=25.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecC
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
|||+|....+-..+..+|++.|+.+.....
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 899999999999999999998987766554
No 185
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=76.39 E-value=10 Score=29.93 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=42.6
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
..+|+|++|..-.-. .-.+.+++||+.. +. +.|+-.+-.+.+...++.+.|||....-
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~~~--p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVREAF--PE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHhhC--CC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 358999999876543 4678899999754 33 3444454668888999999999987543
No 186
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.34 E-value=22 Score=25.33 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=46.0
Q ss_pred ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHH
Q 042079 50 AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECL 127 (153)
Q Consensus 50 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~ 127 (153)
+.+..++.+.. ...+|++-+ .|. .-|.+.++.++.. .+++|++.+.+ -+.+...+.+
T Consensus 112 ~~t~~e~~~A~---------------~~Gadyv~~---Fpt~~~~G~~~l~~~~~~--~~~ipvvaiGG-I~~~n~~~~l 170 (187)
T PRK07455 112 ALTPTEIVTAW---------------QAGASCVKV---FPVQAVGGADYIKSLQGP--LGHIPLIPTGG-VTLENAQAFI 170 (187)
T ss_pred cCCHHHHHHHH---------------HCCCCEEEE---CcCCcccCHHHHHHHHhh--CCCCcEEEeCC-CCHHHHHHHH
Confidence 77777776655 235778866 443 3489999999863 35789876655 4678888999
Q ss_pred HhcCccc
Q 042079 128 EEGAQMF 134 (153)
Q Consensus 128 ~~ga~~~ 134 (153)
+.|++.+
T Consensus 171 ~aGa~~v 177 (187)
T PRK07455 171 QAGAIAV 177 (187)
T ss_pred HCCCeEE
Confidence 9998764
No 187
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=75.63 E-value=28 Score=25.19 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=50.6
Q ss_pred HHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC------CCCCCCHHHHHHHHHhccCCCCCc
Q 042079 38 NLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY------CMPGMTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 38 ~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~------~~~~~~g~~~~~~lr~~~~~~~~p 110 (153)
..++..+. -.--+.+.++++.... -.+|+|=.-+ .......++++++|.+. .+|
T Consensus 86 ~~i~~~~~l~MADist~ee~~~A~~---------------~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~p 146 (192)
T PF04131_consen 86 REIKEKYQLVMADISTLEEAINAAE---------------LGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVP 146 (192)
T ss_dssp HHHHHCTSEEEEE-SSHHHHHHHHH---------------TT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSE
T ss_pred HHHHHhCcEEeeecCCHHHHHHHHH---------------cCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCc
Confidence 33444442 2335778888877652 3589886532 22234568899999863 578
Q ss_pred EEEEeCCCChhhHHHHHHhcCccccc
Q 042079 111 VVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
+|.=....+++...++++.|++..+.
T Consensus 147 vIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 147 VIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp EEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred EeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 88777778999999999999998753
No 188
>PRK13566 anthranilate synthase; Provisional
Probab=75.30 E-value=25 Score=30.70 Aligned_cols=87 Identities=21% Similarity=0.249 Sum_probs=53.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC--CCCC-CCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY--CMPG-MTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~--~~~~-~~g~~ 95 (153)
+.++|+|||....+...+.++|++.|+.+..+...... +.+ ....||.||+-- ..|. ....+
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~--------------~~~~~DgVVLsgGpgsp~d~~~~~ 589 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EML--------------DRVNPDLVVLSPGPGRPSDFDCKA 589 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHh--------------hhcCCCEEEECCCCCChhhCCcHH
Confidence 45789999999888889999999999988776654321 222 113578877632 1221 22344
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHH
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINEC 126 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a 126 (153)
+++.+.+ ..+||+-+.- .-+.+..+
T Consensus 590 lI~~a~~----~~iPILGICl--G~QlLa~a 614 (720)
T PRK13566 590 TIDAALA----RNLPIFGVCL--GLQAIVEA 614 (720)
T ss_pred HHHHHHH----CCCcEEEEeh--hHHHHHHH
Confidence 5555433 3579887764 33444443
No 189
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=75.08 E-value=25 Score=24.35 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEE--------------ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEE
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTT--------------AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVIT 84 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~--------------~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~ 84 (153)
+..++||+.......+...+.|+..++.+.. +-+.......+.. ......||+|||
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~----------p~~~~~yd~II~ 101 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLN----------PCRLKNYDVIIM 101 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHT----------SSCTTS-SEEEE
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcC----------cccccCccEEEE
Confidence 4578999999999999999999876533211 1111222232211 123457999999
Q ss_pred eC-CCCCCCHHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 85 DY-CMPGMTGYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 85 D~-~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
|- +..+...+.+.-.++.........+|.+|+.
T Consensus 102 DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 102 DECHFTDPTSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp CTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred eccccCCHHHHhhheeHHHhhhccCeeEEEEeCC
Confidence 94 4445445555555554332234678888764
No 190
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=74.95 E-value=21 Score=25.84 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=41.4
Q ss_pred EEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc--cCCCChhHHHHHHhh
Q 042079 83 ITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM--LKPLKPSDVKKLTGH 150 (153)
Q Consensus 83 i~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l--~KP~~~~~l~~~~~~ 150 (153)
++|........++.++.+++. ..+||++...-.+......+++.|++..+ ..-+..+.+.+++..
T Consensus 50 v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 50 VLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred EEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 444444444567788888874 36898865444456678889999999886 333444555555443
No 191
>PRK15320 transcriptional activator SprB; Provisional
Probab=74.83 E-value=22 Score=26.08 Aligned_cols=99 Identities=14% Similarity=0.040 Sum_probs=64.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc--CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS--ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~--~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+|+|.+++=...-.+..++++. +..|.++.+....+..++ ..||.+++=+--|. .-.-++.
T Consensus 2 r~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~---------------~~p~a~lil~l~p~-eh~~lf~ 65 (251)
T PRK15320 2 RNVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLS---------------DMPDAGLILALNPH-EHVYLFH 65 (251)
T ss_pred CcEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHh---------------hCCCceEEEeeCch-hHHHHHH
Confidence 35788888877787888888864 567778887776666663 35666655443444 3344556
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
.|++.- ++-|+++++..--..+..-..-.|.-+|+.|
T Consensus 66 ~l~~~l--~~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 66 ALLTRL--QNRKVLVVADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred HHHHHc--CCCceEEEecceeehhhhhhhhhcchhHHHH
Confidence 666643 6778998887654444333445777777765
No 192
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=74.51 E-value=43 Score=28.91 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=63.9
Q ss_pred HHHHHHhcCcEEEE--ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-----CCCHHHHHHHHHhccCCCC
Q 042079 36 VENLLKNSACKVTT--AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-----GMTGYELLKKIKESSVMKE 108 (153)
Q Consensus 36 l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-----~~~g~~~~~~lr~~~~~~~ 108 (153)
.-..|++.|+.+.. +.++...+..+. .-++|.|=+|..+- +.....+++.+........
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~--------------~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLV--------------SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLN 748 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHh--------------hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCC
Confidence 33457778988765 445555555552 34689999886442 2234455666543221124
Q ss_pred CcEEEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHHHHHHhh
Q 042079 109 VPVVVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 109 ~pii~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l~~~~~~ 150 (153)
+.+ +..+-.+.+....+.+.|++ + |+.||...+++...+.+
T Consensus 749 i~v-ia~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 749 LTV-VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred CeE-EEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 444 35666678888888899985 3 58899999999887665
No 193
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=74.46 E-value=7.1 Score=29.15 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=40.4
Q ss_pred EEEeCCCCCCCH-----HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 82 VITDYCMPGMTG-----YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 82 ii~D~~~~~~~g-----~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
.+|=+..|-.+| ..+++.|++. .++|+|+=++-..+++...+++.|+|..|.-
T Consensus 154 avMPl~aPIGSg~G~~n~~~l~iiie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 154 AVMPLGAPIGSGLGLQNPYNLEIIIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred EeccccccccCCcCcCCHHHHHHHHHh---CCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 455566665444 3466777764 3899999999889999999999999998753
No 194
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=73.84 E-value=16 Score=30.14 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=41.8
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...|.|.+|...... .-.+++++|++.. +++|+|+ ..-.+.+....+.+.|++.+-
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRALD--LGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHHC--CCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 458999999977533 4577888888753 5778765 445678888899999998653
No 195
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=73.19 E-value=37 Score=25.52 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=53.0
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCC-hhHHHHHHh
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLK-PSDVKKLTG 149 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~-~~~l~~~~~ 149 (153)
...||-+++|..-...+.-.++..|+.....+..|+| =.....+..+.++++.|+..+|..=++ .++-++++.
T Consensus 36 ~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvV-R~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 36 TAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVV-RPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred hcCCCEEEecccccCccHHHHHHHHHHhhccCCCCee-eCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHH
Confidence 3569999999999888988999998865544455665 334457888999999999999865443 344444443
No 196
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=73.05 E-value=40 Score=25.87 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=60.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHh----cCcE---EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKN----SACK---VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~----~~~~---v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.+||=|+|......++..+++ .++. -..+++.+++.+.+. ..+|+|++|-..|. .--
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~---------------agaDiImLDNm~~e-~~~ 223 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE---------------AGADIIMLDNMSPE-ELK 223 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH---------------cCCCEEEecCCCHH-HHH
Confidence 478888888877766666654 3432 236888888888773 46899999964442 223
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.++.++ ...-.++-.++.-+.+.+.+....|+|-+
T Consensus 224 ~av~~l~----~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 224 EAVKLLG----LAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred HHHHHhc----cCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 3344431 12334555666778888888888888754
No 197
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=72.88 E-value=39 Score=25.65 Aligned_cols=91 Identities=15% Similarity=0.079 Sum_probs=57.3
Q ss_pred eEEEEeCCHHHHHHH----HHHHHhcC---cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIV----ENLLKNSA---CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l----~~~l~~~~---~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.+||.|+|......+ ..+-+..+ .....+++.+++.+.+. ..+|+|.+|-.. .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~---------------~gaDyI~ld~~~-----~ 213 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALE---------------AGADIIMLDNMS-----P 213 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH---------------cCCCEEEECCcC-----H
Confidence 578888886655322 22222233 23457888888877762 458999998532 4
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.++++.+... .++|+++.. .-+.+.+.+..+.|++.+
T Consensus 214 e~l~~~~~~~~-~~ipi~AiG-GI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 214 EELREAVALLK-GRVLLEASG-GITLENIRAYAETGVDYI 251 (268)
T ss_pred HHHHHHHHHcC-CCCcEEEEC-CCCHHHHHHHHHcCCCEE
Confidence 55666554321 257766544 457888888899998865
No 198
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.33 E-value=35 Score=24.94 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=59.2
Q ss_pred HHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCc--EEEE
Q 042079 38 NLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVP--VVVV 114 (153)
Q Consensus 38 ~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~p--ii~~ 114 (153)
..|.+.+. -+....+.++++....... .. -+=++++.+....+++.++.+++.. +.-| +|-.
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-----------~~--Gi~~iEit~~~~~a~~~i~~l~~~~--~~~p~~~vGa 72 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-----------KG--GIKAIEVTYTNPFASEVIKELVELY--KDDPEVLIGA 72 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-----------HC--CCCEEEEECCCccHHHHHHHHHHHc--CCCCCeEEee
Confidence 34455554 4556677777766653221 12 2445666666777899999998743 2112 2333
Q ss_pred eCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 115 SSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 115 t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
..-.+.+...++.+.|++ |+..|....++.+...
T Consensus 73 GTV~~~~~~~~a~~aGA~-FivsP~~~~~v~~~~~ 106 (213)
T PRK06552 73 GTVLDAVTARLAILAGAQ-FIVSPSFNRETAKICN 106 (213)
T ss_pred eeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 334577888889999997 7778877666665443
No 199
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=72.31 E-value=13 Score=29.02 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=41.4
Q ss_pred ccEEEEeCCCCC-CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 79 VNLVITDYCMPG-MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 79 ~dlii~D~~~~~-~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.|+|++|..-.. ...++.++++|+.. +.|.++...-.+.+....+.+.|++.+..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 699999986553 35677888888753 45666666567888889999999998753
No 200
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=72.23 E-value=40 Score=25.54 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=56.1
Q ss_pred eEEEEeCCHHHHHHHH----HHHHhcC---cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIVE----NLLKNSA---CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~----~~l~~~~---~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.+||.|+|......+. ..-+..+ .....+++.+++.+... ..+|+|.+|-..|
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~---------------~gaDyI~ld~~~~----- 209 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAE---------------AGADIIMLDNMKP----- 209 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHH---------------cCCCEEEECCCCH-----
Confidence 5788888865543322 2222233 23457889988887762 4589999986444
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+-++++.+... ..+|+++ ++.-+.+.+.+..+.|++.+
T Consensus 210 e~lk~~v~~~~-~~ipi~A-sGGI~~~ni~~~a~~Gvd~I 247 (265)
T TIGR00078 210 EEIKEAVQLLK-GRVLLEA-SGGITLDNLEEYAETGVDVI 247 (265)
T ss_pred HHHHHHHHHhc-CCCcEEE-ECCCCHHHHHHHHHcCCCEE
Confidence 33444433211 2367654 44457888888999998865
No 201
>PRK10060 RNase II stability modulator; Provisional
Probab=72.14 E-value=59 Score=27.87 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=62.9
Q ss_pred HHHHHHHhcCcEEEE--ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC----C-CCCHHHHHHHHHhccCCC
Q 042079 35 IVENLLKNSACKVTT--AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM----P-GMTGYELLKKIKESSVMK 107 (153)
Q Consensus 35 ~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~----~-~~~g~~~~~~lr~~~~~~ 107 (153)
..-..|++.|+.+.. +.++...+..+. .-++|.|=+|-.+ . +.....+++.+-.....-
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L~--------------~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~l 610 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQLA--------------RFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQAL 610 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHH--------------hCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHC
Confidence 334556778987765 455555666663 3468999888533 2 234556666553222112
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHHHHHHhh
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l~~~~~~ 150 (153)
.+.+| ..+-.+.+....+.+.|++ + |+.||....++.+.+.+
T Consensus 611 g~~vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 611 NLQVI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CCcEE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 45554 4455567777777888884 3 47899999999887654
No 202
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=72.00 E-value=26 Score=25.54 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=39.4
Q ss_pred cc-EEEEeCCCCCC-CH--HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-Cccccc
Q 042079 79 VN-LVITDYCMPGM-TG--YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQMFML 136 (153)
Q Consensus 79 ~d-lii~D~~~~~~-~g--~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~~~l~ 136 (153)
++ +++.+....+. .| +++++++++.. ++|+|.-.+-.+.++..++++.| +++++.
T Consensus 160 ~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 160 VKAIIYTDISRDGTLSGPNVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCEEEEeeecCcCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 45 67776643322 33 78888888642 58998877778889999999988 887653
No 203
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=71.70 E-value=21 Score=27.84 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=36.2
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM 133 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~ 133 (153)
+..|++++--.+ .=+++++.+|++. +++|+.++--......+..|-+.|..+
T Consensus 237 EGAD~lMVKPal---~YLDIi~~~k~~~--~~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 237 EGADMIMVKPGT---PYLDIVREAKDKH--PDLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred hCCCEEEEcCCc---hHHHHHHHHHHhc--cCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 468999988544 4578889998754 478998886655555555566665443
No 204
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.66 E-value=43 Score=25.62 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=58.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHH----hcC--c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 21 PHVLAVDDSIVDRKIVENLLK----NSA--C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~----~~~--~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
-.|||-|+|......+...++ ..+ . .-.++++.+++.+.. ...+|+|.+|- -+
T Consensus 159 d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~---------------~~gaDyI~lD~-----~~ 218 (277)
T PRK08072 159 DGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAV---------------AAGADIIMFDN-----RT 218 (277)
T ss_pred ceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH---------------HcCCCEEEECC-----CC
Confidence 358888888766644444332 233 2 245788888887765 24689999972 34
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+.++++.+... .++|+.+ ++.-+.+.+.+..+.|++.+
T Consensus 219 ~e~l~~~~~~~~-~~i~i~A-iGGIt~~ni~~~a~~Gvd~I 257 (277)
T PRK08072 219 PDEIREFVKLVP-SAIVTEA-SGGITLENLPAYGGTGVDYI 257 (277)
T ss_pred HHHHHHHHHhcC-CCceEEE-ECCCCHHHHHHHHHcCCCEE
Confidence 566777765321 2344443 34457888888999999865
No 205
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=71.56 E-value=14 Score=29.20 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=40.7
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..+|+|++|..-.-. .-.++++++|+.. |+++|| ..+-.+.+...+.++.|||..
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~~--P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREAW--PDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHhC--CCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 368999999876543 4678889998754 566543 555567788888899999965
No 206
>PRK00811 spermidine synthase; Provisional
Probab=71.18 E-value=43 Score=25.46 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=43.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC------cEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSA------CKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~------~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
..+|..||-++...+..++.+...+ -.+. ...++.+.+.. ...+||+||+|...|...
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---------------~~~~yDvIi~D~~dp~~~ 164 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---------------TENSFDVIIVDSTDPVGP 164 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---------------CCCcccEEEECCCCCCCc
Confidence 4579999999998888888775321 1232 34444443322 135799999998666422
Q ss_pred -----HHHHHHHHHhc
Q 042079 93 -----GYELLKKIKES 103 (153)
Q Consensus 93 -----g~~~~~~lr~~ 103 (153)
..++++.+++.
T Consensus 165 ~~~l~t~ef~~~~~~~ 180 (283)
T PRK00811 165 AEGLFTKEFYENCKRA 180 (283)
T ss_pred hhhhhHHHHHHHHHHh
Confidence 24566666653
No 207
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.90 E-value=47 Score=27.32 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=54.0
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC----HHHHH---HH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT----GYELL---KK 99 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~----g~~~~---~~ 99 (153)
--|....+.+...|...||.+.. + ....|+++++..-...+ ....+ +.
T Consensus 34 ~~N~~dse~~~~~l~~~G~~~~~--~-----------------------~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~ 88 (467)
T PRK14329 34 QMNFADSEIVASILQMAGYNTTE--N-----------------------LEEADLVLVNTCSIRDNAEQKVRKRLEKFNA 88 (467)
T ss_pred CCcHHHHHHHHHHHHHCcCEECC--C-----------------------cccCCEEEEeCcceechHHHHHHHHHHHHHH
Confidence 34666667777888878876533 1 12468999886554422 23333 33
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHh-cCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEE-GAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~-ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +..+|+ +++.-......+.++. +..|++..+-....+.+++..+
T Consensus 89 ~k~~~--p~~~iv-vgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~ 138 (467)
T PRK14329 89 LKKKN--PKLIVG-VLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEV 138 (467)
T ss_pred HHhhC--CCcEEE-EECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 33322 344444 5554333333344444 4367777887777777766543
No 208
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.89 E-value=58 Score=27.32 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=31.6
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+.|.+++-......+ ..++..+|+.. +..+++.-+. +++......+.|+|..+
T Consensus 480 ~~a~~viv~~~~~~~~-~~iv~~~~~~~--~~~~iiar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 480 DCARWLLLTIPNGYEA-GEIVASAREKR--PDIEIIARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred cccCEEEEEcCChHHH-HHHHHHHHHHC--CCCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 3567666654333222 23455566543 5677877664 45555666789998665
No 209
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=70.69 E-value=41 Score=24.97 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCcEEEEecCH---HHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC------CHHHHHHHHHhc
Q 042079 33 RKIVENLLKNSACKVTTAENG---MRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM------TGYELLKKIKES 103 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~------~g~~~~~~lr~~ 103 (153)
...+.+.+++.|..+..+-+. .+.++.+. .....++++. ..|+. +..+.++++|+.
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~--------------~~~~~~l~ms-v~~~~g~~~~~~~~~~i~~lr~~ 182 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS--------------KLSPLFIYYG-LRPATGVPLPVSVERNIKRVRNL 182 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH--------------HhCCCEEEEE-eCCCCCCCchHHHHHHHHHHHHh
Confidence 344556667778765544333 22333321 1234566663 34432 224566677764
Q ss_pred cCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 104 SVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 104 ~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
. ++.|+++=.+-.+.+.+.++.+.|+|.++.--
T Consensus 183 ~--~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 183 V--GNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred c--CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 3 24565433333377888888899999987654
No 210
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=70.60 E-value=43 Score=25.19 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
-.+.++++|+.. ..|+++=.+-.+.+.+.++.+.|+|.++.-.
T Consensus 186 ~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 467778887643 5576653434458888999999999886653
No 211
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=70.32 E-value=9.8 Score=29.29 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhccCCCCCcEE--EEeCCCChhhHHHHHHhcCcccc-----cCCCChhHHHH
Q 042079 92 TGYELLKKIKESSVMKEVPVV--VVSSENIPTRINECLEEGAQMFM-----LKPLKPSDVKK 146 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii--~~t~~~~~~~~~~a~~~ga~~~l-----~KP~~~~~l~~ 146 (153)
.++++++++++.. .+|+| ....-.+++.+..+++.|++.++ .|.-++.+..+
T Consensus 190 ~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~ak 248 (293)
T PRK04180 190 APYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRAR 248 (293)
T ss_pred CCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHH
Confidence 4788899988743 68997 55555689999999999998863 33335555443
No 212
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.97 E-value=25 Score=26.15 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=43.2
Q ss_pred CcccEEEEeCCCCCC--CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPGM--TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~~--~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
...|.|-+|...++. -.++.++++++.. +.+|||.-.+-.+.+...+.++.|++..
T Consensus 160 aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~~ipIIgNGgI~s~eda~e~l~~GAd~V 217 (231)
T TIGR00736 160 DGFDGIHVDAMYPGKPYADMDLLKILSEEF--NDKIIIGNNSIDDIESAKEMLKAGADFV 217 (231)
T ss_pred cCCCEEEEeeCCCCCchhhHHHHHHHHHhc--CCCcEEEECCcCCHHHHHHHHHhCCCeE
Confidence 457888888766654 3588889998743 2488888777778899999999999876
No 213
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=69.87 E-value=51 Score=25.72 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=56.5
Q ss_pred eEEEEeCCHHHHHHHHHHHH-------hcCc---EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC--CC
Q 042079 22 HVLAVDDSIVDRKIVENLLK-------NSAC---KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC--MP 89 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~-------~~~~---~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~--~~ 89 (153)
.|||-|+|......+...++ ..++ ....+++.+++.+.+..... ....+|+|++|-. .|
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~---------~~agaDiImLDnm~~~~ 242 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSD---------TKTSLTRVMLDNMVVPL 242 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhccc---------ccCCCCEEEeCCCcccc
Confidence 48888888765543333322 2222 23467888888887731000 0145899999965 12
Q ss_pred CC---CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 90 GM---TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 90 ~~---~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.. +--++-+.++... ...+ +-.++.-+.+.+.+....|+|-.
T Consensus 243 ~~~~~~~e~l~~av~~~~--~~~~-lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 243 ENGDVDVSMLKEAVELIN--GRFE-TEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred cccCCCHHHHHHHHHhhC--CCce-EEEECCCCHHHHHHHHHcCCCEE
Confidence 10 2222223232211 2333 66777778888888888888754
No 214
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=69.82 E-value=41 Score=24.69 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=39.6
Q ss_pred CcccEEEEeCCCC------CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMP------GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
...|.|.+.--.+ ...|+++++++++. .++|++.+.+- +.+.+.++.+.|++.+
T Consensus 130 ~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~---~~iPvvAIGGI-~~~n~~~~~~~GA~gi 189 (221)
T PRK06512 130 LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM---IEIPCIVQAGS-DLASAVEVAETGAEFV 189 (221)
T ss_pred cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHh---CCCCEEEEeCC-CHHHHHHHHHhCCCEE
Confidence 4579998864331 12478888888764 37899998875 6777888999999775
No 215
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=69.64 E-value=36 Score=24.35 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=52.9
Q ss_pred HHHHHhcCcEEEEec--CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-----CCHHHHHHHHHhccCCCCC
Q 042079 37 ENLLKNSACKVTTAE--NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-----MTGYELLKKIKESSVMKEV 109 (153)
Q Consensus 37 ~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-----~~g~~~~~~lr~~~~~~~~ 109 (153)
-..|+..|+.+..-. .+...+..+. .-+||.|-+|..+-. .....+++.+........+
T Consensus 139 i~~l~~~G~~ialddfg~~~~~~~~l~--------------~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 204 (241)
T smart00052 139 LQRLRELGVRIALDDFGTGYSSLSYLK--------------RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGL 204 (241)
T ss_pred HHHHHHCCCEEEEeCCCCcHHHHHHHH--------------hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCC
Confidence 344667788776533 3344444442 346899999864421 1234555555432211244
Q ss_pred cEEEEeCCCChhhHHHHHHhcCc---c-cccCCCChh
Q 042079 110 PVVVVSSENIPTRINECLEEGAQ---M-FMLKPLKPS 142 (153)
Q Consensus 110 pii~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~ 142 (153)
.+ +..+-.+.+....+.+.|++ + |+.||...+
T Consensus 205 ~v-ia~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 205 QV-VAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred eE-EEecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 44 46666678888888899985 3 577787653
No 216
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=69.60 E-value=37 Score=24.09 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=55.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEEec-------CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEe-CCCCC-CC
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAE-------NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITD-YCMPG-MT 92 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~~~-------~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D-~~~~~-~~ 92 (153)
.||+-|.|...++.++..-++.|.+|.+.+ ++.+.++++.. ..+.|=++++| ....+ ..
T Consensus 2 VIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~------------a~~DPV~VMfDD~G~~g~G~ 69 (180)
T PF14097_consen 2 VILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQ------------APHDPVLVMFDDKGFIGEGP 69 (180)
T ss_pred EEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHh------------CCCCCEEEEEeCCCCCCCCc
Confidence 477888899999999999889998888765 67788887732 23456666665 44544 36
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
|-..++.+-......=+-+|++++.
T Consensus 70 GE~Al~~v~~h~~IeVLG~iAVASn 94 (180)
T PF14097_consen 70 GEQALEYVANHPDIEVLGAIAVASN 94 (180)
T ss_pred cHHHHHHHHcCCCceEEEEEEEEec
Confidence 7777787765432111234555554
No 217
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.33 E-value=42 Score=25.77 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=56.2
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcC--c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSA--C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~--~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.|||-|+|......+...++ ..+ . ....+++.+++.+.+. ..+|+|++|-..|. +--
T Consensus 166 ~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~---------------~gaDiI~LDn~s~e-~l~ 229 (281)
T PRK06106 166 AVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALE---------------LGVDAVLLDNMTPD-TLR 229 (281)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHH---------------cCCCEEEeCCCCHH-HHH
Confidence 47777777665543444333 223 1 2457889999988873 46899999964332 222
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.++.++ ...+ +..++.-+.+.+.+....|+|-+
T Consensus 230 ~av~~~~-----~~~~-leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 230 EAVAIVA-----GRAI-TEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred HHHHHhC-----CCce-EEEECCCCHHHHHHHHhcCCCEE
Confidence 2233222 2333 66777778888888888998754
No 218
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=69.30 E-value=24 Score=27.58 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=35.6
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM 133 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~ 133 (153)
+..|++++--.| .=+++++.+++.. ++|+.++--......+..|.+.|..+
T Consensus 240 EGAD~lMVKPal---~YLDIi~~~k~~~---~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 240 EGADMVMVKPAL---PYLDIIRRVKDEF---NLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred hCCCEEEEcCCc---hHHHHHHHHHhcC---CCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 468999998544 4578889998753 68998886655556556666665544
No 219
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=69.02 E-value=40 Score=30.36 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=47.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC---CHHH-
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS-ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM---TGYE- 95 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~-~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~---~g~~- 95 (153)
+++|+||+...+--.|.++|... |..+..+.+....++.+.... -....||.||+.-....- ....
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~---------~~~~~~d~IVlSPGPG~P~~~~d~Gi 152 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYL---------YEEKAFDNIVISPGPGSPTCPADIGI 152 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhh---------hcccCCCEEEECCCCCCccchHHHHH
Confidence 68999999999988999999887 777665554322222221000 001357888886543221 1111
Q ss_pred HHHHHHhccCCCCCcEEEEeC
Q 042079 96 LLKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~ 116 (153)
.++.|++. ..+||+-+.-
T Consensus 153 ~~~~i~~~---~~iPILGICL 170 (918)
T PLN02889 153 CLRLLLEC---RDIPILGVCL 170 (918)
T ss_pred HHHHHHHh---CCCcEEEEcH
Confidence 13444432 2588887763
No 220
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.99 E-value=44 Score=24.69 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccC--CCCCcEEEE
Q 042079 38 NLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSV--MKEVPVVVV 114 (153)
Q Consensus 38 ~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~--~~~~pii~~ 114 (153)
..|.+.+. -+....+.+++++...... ... +=.+++.+...++++.++.|++... .+++ +|-.
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~-----------~gG--i~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGa 75 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACY-----------DGG--ARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGV 75 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHH-----------HCC--CCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEee
Confidence 44444453 4556777777777653221 122 3355666666678888888864221 1221 2333
Q ss_pred eCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 115 SSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 115 t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
..-.+.+...++.+.|++ |+..|....++.+...
T Consensus 76 GTVl~~e~a~~a~~aGA~-FiVsP~~~~~v~~~~~ 109 (222)
T PRK07114 76 GSIVDAATAALYIQLGAN-FIVTPLFNPDIAKVCN 109 (222)
T ss_pred EeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 334467778888999987 7777766666655443
No 221
>PRK08999 hypothetical protein; Provisional
Probab=68.90 E-value=45 Score=25.52 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=39.8
Q ss_pred CcccEEEEeCCCCC-------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPG-------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~-------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..+|.+++.--.+. .-|++.++++++. .++|++++.+- +.+.+.++.+.|++.+
T Consensus 245 ~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~AiGGI-~~~~~~~~~~~g~~gv 305 (312)
T PRK08999 245 LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAG---VPLPVYALGGL-GPGDLEEAREHGAQGI 305 (312)
T ss_pred cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHhCCCEE
Confidence 35899988754432 2467888888764 36899999875 6777788899998875
No 222
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=68.57 E-value=53 Score=25.45 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=57.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHh----cC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKN----SA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~----~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.|||-|+|......+...++. .. .....+++.+++.+.+. ..+|+|++|-..|. +--+
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~---------------~gaDiI~LDn~s~e-~~~~ 244 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALK---------------AGADIIMLDNFTTE-QMRE 244 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH---------------cCCCEEEeCCCChH-HHHH
Confidence 477778876665444444432 21 23557888999988873 45899999964442 2223
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+++.++ .+ ..+..++.-+.+.+.+.-..|+|-+
T Consensus 245 av~~~~-----~~-~~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 245 AVKRTN-----GR-ALLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred HHHhhc-----CC-eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 333322 23 3556676778888888889998765
No 223
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=68.42 E-value=21 Score=25.18 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCCCCCc-EEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 93 GYELLKKIKESSVMKEVP-VVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~p-ii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
-.++++.+++.. +..+ |.+=+ .+.+...++++.|++....--++++++++++..+
T Consensus 66 i~~av~~~~~~~--~~~~~I~VEv--~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l 121 (169)
T PF01729_consen 66 IEEAVKAARQAA--PEKKKIEVEV--ENLEEAEEALEAGADIIMLDNMSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHHHS--TTTSEEEEEE--SSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCceEEEEc--CCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHH
Confidence 467788888755 3443 43333 4577888999999999988889999999888743
No 224
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=68.27 E-value=38 Score=25.16 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CC-HHHHHHHHHhc
Q 042079 29 SIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MT-GYELLKKIKES 103 (153)
Q Consensus 29 ~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~-g~~~~~~lr~~ 103 (153)
|.+=.+.+..+|+..||+++-.. ..++.++.. ..++||+|-+..-|.. +. --++++.|++.
T Consensus 117 HdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a--------------~e~k~d~v~~SalMTttm~~~~~viE~L~ee 182 (227)
T COG5012 117 HDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKA--------------KELKPDLVSMSALMTTTMIGMKDVIELLKEE 182 (227)
T ss_pred HHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHH--------------HHcCCcEEechHHHHHHHHHHHHHHHHHHHc
Confidence 44445777888888899876433 233344443 2467999998877764 33 45677888887
Q ss_pred cCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 104 SVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 104 ~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
.. +-|++++.+.. +-...-+-+.|+|.|-.-+
T Consensus 183 Gi--Rd~v~v~vGGA-pvtq~~a~~iGAD~~~~dA 214 (227)
T COG5012 183 GI--RDKVIVMVGGA-PVTQDWADKIGADAYAEDA 214 (227)
T ss_pred CC--ccCeEEeecCc-cccHHHHHHhCCCccCcCH
Confidence 64 45666665433 1222335578999885433
No 225
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=68.21 E-value=25 Score=25.76 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCC-C--HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 80 NLVITDYCMPGM-T--GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 80 dlii~D~~~~~~-~--g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|+.|+.--++ . .+++++++++. ..+|+++-.+-.+.++..++.+.|++..+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 688899866432 2 47888888864 368988777777888888888999987654
No 226
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=68.11 E-value=17 Score=32.24 Aligned_cols=72 Identities=14% Similarity=0.336 Sum_probs=44.5
Q ss_pred CCcccEEEEe-CCCCCCCHHH-HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 76 GTKVNLVITD-YCMPGMTGYE-LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 76 ~~~~dlii~D-~~~~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..++.|+|+| +++-...++. +++.|.+ .. ..+.+|+++. ..+.+...++.-+..|-.++++.+++...+.+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEE-pP-~~~~fIl~tt--~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEE-PP-EHLKFIFATT--EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhC-CC-CCeEEEEEeC--ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence 4567899987 4444444544 3444443 21 3555665553 333455566777777888899999988776653
No 227
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=68.10 E-value=27 Score=28.86 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=41.5
Q ss_pred CcccEEEEeCCCC-CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMP-GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~-~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..+|++.+|.... ...-.+.++++++.. +++|+++ ..-.+.+....+.+.|++.+-
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~--p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKY--PDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhC--CCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4588999997533 345677888888753 5778775 666678888999999998763
No 228
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=68.04 E-value=28 Score=26.66 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=44.3
Q ss_pred ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC----C---CCCHHHHHHHHHhccCCCCCcEEEEeCC-CChh
Q 042079 50 AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM----P---GMTGYELLKKIKESSVMKEVPVVVVSSE-NIPT 121 (153)
Q Consensus 50 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~----~---~~~g~~~~~~lr~~~~~~~~pii~~t~~-~~~~ 121 (153)
+++.+++.++.. .+.+|.+-+.+.. . ..-+++.++.+++.. .+|+++..+. -+.+
T Consensus 152 ~t~~eea~~f~~--------------~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~---~iPlv~hGgSGi~~e 214 (282)
T TIGR01859 152 LADPDEAEQFVK--------------ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT---NIPLVLHGASGIPEE 214 (282)
T ss_pred cCCHHHHHHHHH--------------HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh---CCCEEEECCCCCCHH
Confidence 446777766652 2457888754211 1 223588899998753 6899888743 3567
Q ss_pred hHHHHHHhcCccc
Q 042079 122 RINECLEEGAQMF 134 (153)
Q Consensus 122 ~~~~a~~~ga~~~ 134 (153)
...++.+.|++.+
T Consensus 215 ~i~~~i~~Gi~ki 227 (282)
T TIGR01859 215 QIKKAIKLGIAKI 227 (282)
T ss_pred HHHHHHHcCCCEE
Confidence 7788899988654
No 229
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.82 E-value=53 Score=25.15 Aligned_cols=91 Identities=9% Similarity=0.044 Sum_probs=53.5
Q ss_pred eEEEEeCCHHHHHHHHHHHH---hc--C-cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK---NS--A-CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~---~~--~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.+||-|+|......+...++ +. + ..-..+++.+++.+.+. ..+|+|++|-. +.+
T Consensus 162 ~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~tleea~eA~~---------------~gaD~I~LD~~-----~~e 221 (277)
T PRK05742 162 AFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESLDELRQALA---------------AGADIVMLDEL-----SLD 221 (277)
T ss_pred cEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH---------------cCCCEEEECCC-----CHH
Confidence 36777777555433322221 11 1 23446788888877762 45899999832 334
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
-++++.+.. .+++|+.+.. .-+.+.+.+....|+|.+
T Consensus 222 ~l~~~v~~~-~~~i~leAsG-GIt~~ni~~~a~tGvD~I 258 (277)
T PRK05742 222 DMREAVRLT-AGRAKLEASG-GINESTLRVIAETGVDYI 258 (277)
T ss_pred HHHHHHHHh-CCCCcEEEEC-CCCHHHHHHHHHcCCCEE
Confidence 444443321 1367766444 457788888889998865
No 230
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=67.75 E-value=20 Score=26.59 Aligned_cols=53 Identities=19% Similarity=0.450 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCCCCcEEEEe-----CCCChhhHHHHHHhcCcccccC--CCC-hhHHHHHHhh
Q 042079 95 ELLKKIKESSVMKEVPVVVVS-----SENIPTRINECLEEGAQMFMLK--PLK-PSDVKKLTGH 150 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t-----~~~~~~~~~~a~~~ga~~~l~K--P~~-~~~l~~~~~~ 150 (153)
++++.+|+. .++|+++++ ..........+.+.|++.++.. |+. .++..+++..
T Consensus 64 ~~v~~vr~~---~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~ 124 (244)
T PRK13125 64 PLLEEVRKD---VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEI 124 (244)
T ss_pred HHHHHHhcc---CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHH
Confidence 456666642 367876553 1223344677888999988775 343 3555555544
No 231
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=67.48 E-value=40 Score=23.58 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CcEEEEecC-------HHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS--ACKVTTAEN-------GMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~--~~~v~~~~~-------~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
..+|.++...+.....+...+++. +..+....+ ..+.++.+ +...||+|++.+.+|.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I--------------~~~~pdiv~vglG~Pk 111 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERI--------------NASGADILFVGLGAPK 111 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHH--------------HHcCCCEEEEECCCCH
Confidence 578999999998888888777764 344433221 12223343 2467999999999887
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEE
Q 042079 91 MTGYELLKKIKESSVMKEVPVVVV 114 (153)
Q Consensus 91 ~~g~~~~~~lr~~~~~~~~pii~~ 114 (153)
.. .++.+.++.. +.++++-
T Consensus 112 QE--~~~~~~~~~l---~~~v~~~ 130 (171)
T cd06533 112 QE--LWIARHKDRL---PVPVAIG 130 (171)
T ss_pred HH--HHHHHHHHHC---CCCEEEE
Confidence 55 4455655532 3455443
No 232
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=66.72 E-value=19 Score=28.62 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=38.4
Q ss_pred cccEEEEeCCCCC-CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVNLVITDYCMPG-MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~dlii~D~~~~~-~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..|+|++|..-.. ..-.+.++.||+.. +++||| ..+-.+.+.....++.|+|....
T Consensus 120 gvD~ivID~a~g~s~~~~~~ik~ik~~~--~~~~vi-aGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHVIDMIKKIKKKF--PDVPVI-AGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp T-SEEEEE-SSTTSHHHHHHHHHHHHHS--TTSEEE-EEEE-SHHHHHHHHHTT-SEEEE
T ss_pred CCCEEEccccCccHHHHHHHHHHHHHhC--CCceEE-ecccCCHHHHHHHHHcCCCEEEE
Confidence 5799999976543 34678889998865 467765 55556788888899999987643
No 233
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=66.08 E-value=32 Score=24.86 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=45.6
Q ss_pred CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHHHHHHHHhccCCCCCcEEEEeCCCChh
Q 042079 44 ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYELLKKIKESSVMKEVPVVVVSSENIPT 121 (153)
Q Consensus 44 ~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~ 121 (153)
++.+....+..++-+... ...|+|=+|...-. ..-.++++.+|+.. .++++.-.+.+
T Consensus 45 ~~~V~ITPT~~ev~~l~~---------------aGadIIAlDaT~R~Rp~~l~~li~~i~~~~------~l~MADist~e 103 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAE---------------AGADIIALDATDRPRPETLEELIREIKEKY------QLVMADISTLE 103 (192)
T ss_dssp TSS--BS-SHHHHHHHHH---------------CT-SEEEEE-SSSS-SS-HHHHHHHHHHCT------SEEEEE-SSHH
T ss_pred CCCeEECCCHHHHHHHHH---------------cCCCEEEEecCCCCCCcCHHHHHHHHHHhC------cEEeeecCCHH
Confidence 456888888888877662 45899999985532 56788888888742 56677778889
Q ss_pred hHHHHHHhcCc
Q 042079 122 RINECLEEGAQ 132 (153)
Q Consensus 122 ~~~~a~~~ga~ 132 (153)
+...|.+.|+|
T Consensus 104 e~~~A~~~G~D 114 (192)
T PF04131_consen 104 EAINAAELGFD 114 (192)
T ss_dssp HHHHHHHTT-S
T ss_pred HHHHHHHcCCC
Confidence 99999999986
No 234
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=65.80 E-value=38 Score=22.77 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=45.7
Q ss_pred EEEEeCCHHHH--HHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 23 VLAVDDSIVDR--KIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 23 iLiidd~~~~~--~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
|+++.|.-... ..+...+-..-..-....+...++..+.... .....+|++++-+.-.+..-.+-++.+
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~---------~~~~~~d~vvi~lGtNd~~~~~nl~~i 72 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLK---------DSGKLRKTVVIGLGTNGPFTKDQLDEL 72 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHH---------HcCCCCCeEEEEecCCCCCCHHHHHHH
Confidence 56777766544 2333333333233445556666666553211 123568999987766665444444554
Q ss_pred HhccCCCCCcEEEEeCC
Q 042079 101 KESSVMKEVPVVVVSSE 117 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~ 117 (153)
.+.. .+..+|++++..
T Consensus 73 i~~~-~~~~~ivlv~~~ 88 (150)
T cd01840 73 LDAL-GPDRQVYLVNPH 88 (150)
T ss_pred HHHc-CCCCEEEEEECC
Confidence 4332 134677777765
No 235
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=65.70 E-value=48 Score=23.89 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=50.2
Q ss_pred HhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC--CCCHHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 41 KNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP--GMTGYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 41 ~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~--~~~g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
...|..+ ..+.+..++.... ...+|.+.+.-.-. ...+++.++++++... ..+|++...+-
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~---------------~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI 181 (217)
T cd00331 118 RELGMEVLVEVHDEEELERAL---------------ALGAKIIGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGI 181 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHH---------------HcCCCEEEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCC
Confidence 3456654 3456776655444 23577887652111 1134577777776421 36789888888
Q ss_pred CChhhHHHHHHhcCcccc
Q 042079 118 NIPTRINECLEEGAQMFM 135 (153)
Q Consensus 118 ~~~~~~~~a~~~ga~~~l 135 (153)
.+.+++.++.+.|++.++
T Consensus 182 ~s~edi~~~~~~Ga~gvi 199 (217)
T cd00331 182 STPEDVKRLAEAGADAVL 199 (217)
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 888999999999998873
No 236
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=64.86 E-value=29 Score=24.86 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=28.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
++|+|+|-.......+...|+..|+++....+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDP 33 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCH
Confidence 479999999988899999999999988887653
No 237
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=64.78 E-value=48 Score=25.37 Aligned_cols=68 Identities=16% Similarity=0.340 Sum_probs=45.3
Q ss_pred ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC--CCC-----CCCHHHHHHHHHhccCCCCCcEEEEeCCC-Chh
Q 042079 50 AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY--CMP-----GMTGYELLKKIKESSVMKEVPVVVVSSEN-IPT 121 (153)
Q Consensus 50 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~--~~~-----~~~g~~~~~~lr~~~~~~~~pii~~t~~~-~~~ 121 (153)
+++..++.++.. .+.+|.+=+.+ ..+ ..-+++.++++++.. ++|+++..+.. ..+
T Consensus 152 ~t~~eea~~f~~--------------~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e 214 (281)
T PRK06806 152 LTSTTEAKRFAE--------------ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV---HIPLVLHGGSGISPE 214 (281)
T ss_pred eCCHHHHHHHHH--------------hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc---CCCEEEECCCCCCHH
Confidence 566677666552 24578887722 111 224788999998753 68999887443 677
Q ss_pred hHHHHHHhcCccc
Q 042079 122 RINECLEEGAQMF 134 (153)
Q Consensus 122 ~~~~a~~~ga~~~ 134 (153)
...++.+.|++.+
T Consensus 215 ~~~~~i~~G~~ki 227 (281)
T PRK06806 215 DFKKCIQHGIRKI 227 (281)
T ss_pred HHHHHHHcCCcEE
Confidence 7888999998654
No 238
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=64.65 E-value=13 Score=27.53 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=40.8
Q ss_pred cEEEEeCCCCCC---CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 80 NLVITDYCMPGM---TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 80 dlii~D~~~~~~---~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+++.|+..-++ ..+++++.+.+. ..+|+++-.+-.+.+.+.++++.|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 488889865432 236777887764 368999888888999999999999987653
No 239
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.50 E-value=19 Score=26.21 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=39.9
Q ss_pred ccc-EEEEeCCCCCC---CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVN-LVITDYCMPGM---TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~d-lii~D~~~~~~---~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.++ +++.|..-.++ .-+++++.+++. .++|+++-.+-.+.+++.++++.|++.++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 356 66677643322 226788888764 368988777778888898999999998754
No 240
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=64.32 E-value=38 Score=26.48 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=35.7
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+..|++++--.++ =+++++.+++.. ++|+.++--......+..|-+.|..++
T Consensus 237 EGAD~lMVKPal~---YLDIi~~~k~~~---~lPvaaYqVSGEYaMikaAa~~G~~d~ 288 (320)
T cd04823 237 EGADMVMVKPGMP---YLDIIRRVKDEF---GVPTFAYQVSGEYAMLKAAAQNGWLDE 288 (320)
T ss_pred hCCCEEEEcCCch---HHHHHHHHHHhc---CCCEEEEEccHHHHHHHHHHHcCCCcH
Confidence 4689999985554 478888888753 689988866555555555666655443
No 241
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=64.21 E-value=57 Score=24.25 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=42.2
Q ss_pred CCeEEEEe------CCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 20 PPHVLAVD------DSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 20 ~~~iLiid------d~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
.++|++|- +.........+.++..|+++.......+..+.+ ...|+|++. +.+.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l----------------~~ad~I~v~----GGnt 90 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAI----------------ENAEAIFVG----GGNT 90 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHH----------------hcCCEEEEC----CccH
Confidence 46677663 334445668888889999988887776665555 246888854 5666
Q ss_pred HHHHHHHHh
Q 042079 94 YELLKKIKE 102 (153)
Q Consensus 94 ~~~~~~lr~ 102 (153)
+.+++.+++
T Consensus 91 ~~l~~~l~~ 99 (233)
T PRK05282 91 FQLLKQLYE 99 (233)
T ss_pred HHHHHHHHH
Confidence 666665553
No 242
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.18 E-value=85 Score=26.23 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=58.9
Q ss_pred CeEEEEeCCHH----HHHHHHHHHHhc-CcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC------
Q 042079 21 PHVLAVDDSIV----DRKIVENLLKNS-ACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC------ 87 (153)
Q Consensus 21 ~~iLiidd~~~----~~~~l~~~l~~~-~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~------ 87 (153)
.-++++|-..- ..+.++++-+.. +..+. -+.+.+++..++. ..+|.|.+...
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~---------------aGaD~i~vg~g~G~~~~ 325 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ---------------AGVDGLRVGMGSGSICT 325 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH---------------cCcCEEEECCCCCcccc
Confidence 44666665331 123333333333 23332 4777777776662 46888877421
Q ss_pred --------CCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 88 --------MPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 88 --------~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.|....+..+..+.+. ..+|||+=..-....++.+|+..||+...
T Consensus 326 t~~~~~~g~~~~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~ 378 (505)
T PLN02274 326 TQEVCAVGRGQATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVM 378 (505)
T ss_pred CccccccCCCcccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 1233344456665543 36899988888889999999999998764
No 243
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=64.12 E-value=69 Score=25.19 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc-----CCCChhHHHHHHhh
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML-----KPLKPSDVKKLTGH 150 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~-----KP~~~~~l~~~~~~ 150 (153)
..+.++.+.+. +.+|+|+=++-...++...|++.|+++.|. |--+|-.+.+.+.+
T Consensus 237 ~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~ 296 (326)
T PRK11840 237 NPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKL 296 (326)
T ss_pred CHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHH
Confidence 45667777764 479999888888999999999999998754 44566666555543
No 244
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=64.03 E-value=35 Score=26.17 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=47.4
Q ss_pred ccEEEE-eCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 79 VNLVIT-DYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 79 ~dlii~-D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.|.+++ |-+..-. +--+.+++.|+.. +..+.| -..-.+.+...+|++.|+|-.+.--++++++++.+..
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~~~--~~~~kI-EVEvesle~~~eAl~agaDiImLDNm~~e~~~~av~~ 228 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARAAA--PFTKKI-EVEVESLEEAEEALEAGADIIMLDNMSPEELKEAVKL 228 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHHhC--CCCceE-EEEcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 455554 4333221 3455777777643 344433 3344678889999999999999999999999988765
No 245
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.00 E-value=24 Score=29.24 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=40.8
Q ss_pred CcccEEEEeCCCC-CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMP-GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~-~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...|.|.+|..-. ...-.+++++||+.. +++++| ..+-.+.+....+.+.|+|.+-
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~--p~~~v~-agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALD--PGVPIV-AGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHC--CCCeEE-eeccCCHHHHHHHHHcCCCEEE
Confidence 4589999998554 456788899999754 565554 3345577888889999998753
No 246
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=63.91 E-value=68 Score=25.22 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEE
Q 042079 33 RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVV 112 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii 112 (153)
...+...-++.|..+.+..-..+.++++. .+++-++-+...++.-+.+++.+.+. ..|||
T Consensus 78 ~~~L~~~~~~~Gi~~~stpfd~~svd~l~----------------~~~v~~~KIaS~~~~n~pLL~~~A~~----gkPvi 137 (329)
T TIGR03569 78 HRELKEYCESKGIEFLSTPFDLESADFLE----------------DLGVPRFKIPSGEITNAPLLKKIARF----GKPVI 137 (329)
T ss_pred HHHHHHHHHHhCCcEEEEeCCHHHHHHHH----------------hcCCCEEEECcccccCHHHHHHHHhc----CCcEE
Confidence 34455556667877766666666777772 23344556666677779999999874 45999
Q ss_pred EEeCCCChhhHHHHH
Q 042079 113 VVSSENIPTRINECL 127 (153)
Q Consensus 113 ~~t~~~~~~~~~~a~ 127 (153)
+=|+..+.+++..|.
T Consensus 138 lStGmatl~Ei~~Av 152 (329)
T TIGR03569 138 LSTGMATLEEIEAAV 152 (329)
T ss_pred EECCCCCHHHHHHHH
Confidence 888887777665553
No 247
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=63.69 E-value=33 Score=24.53 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=28.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMR 55 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~ 55 (153)
++|+|||-..-+...+.+.|++.++++..+.+..+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~ 35 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV 35 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH
Confidence 47899997777777888899999999998887643
No 248
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=63.67 E-value=31 Score=26.90 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=42.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.|++++.=++|..-+.++..+|-+.-.....++++=+ +.....++++.+ -++.|| +.+||..++++
T Consensus 128 ~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~---Sg~~L~~~L~~~--P~lIKP-N~~EL~~~~g~ 195 (310)
T COG1105 128 ESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDT---SGEALLAALEAK--PWLIKP-NREELEALFGR 195 (310)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEEC---ChHHHHHHHccC--CcEEec-CHHHHHHHhCC
Confidence 467888888888876555544443211111345555434 345566777776 899999 66888877765
No 249
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=63.66 E-value=29 Score=28.32 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=38.8
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
...|+|++|-+-... -.+++++++++.. |+..|| -.+-...+.....+.+|+|..
T Consensus 262 aGvdvviLDSSqGnS~~qiemik~iK~~y--P~l~Vi-aGNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 262 AGVDVVILDSSQGNSIYQLEMIKYIKETY--PDLQII-AGNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred cCCcEEEEecCCCcchhHHHHHHHHHhhC--CCceee-ccceeeHHHHHHHHHccCcee
Confidence 468999999866543 4688999999865 566664 222334566677889999865
No 250
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=63.61 E-value=76 Score=27.83 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
...+|+|||-...+...+.++|++.|+.+..+...
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~ 549 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHS 549 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECC
Confidence 45789999998778889999999999887766543
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=63.37 E-value=19 Score=31.78 Aligned_cols=72 Identities=15% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCcccEEEEeC-CCCCCCHHH-HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 76 GTKVNLVITDY-CMPGMTGYE-LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 76 ~~~~dlii~D~-~~~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..++.++|+|- ++-....+. +++.|.+-. .++.+|+.|.+ ...+...+..-+.-|-.||++.+++.+.+.+.
T Consensus 117 ~gr~KVIIIDEah~LT~~A~NALLKtLEEPP--~~v~FILaTtd--~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~I 190 (830)
T PRK07003 117 DARFKVYMIDEVHMLTNHAFNAMLKTLEEPP--PHVKFILATTD--PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERI 190 (830)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHHHhcC--CCeEEEEEECC--hhhccchhhhheEEEecCCcCHHHHHHHHHHH
Confidence 34678999874 443333333 445554421 35667766653 34455566777788888999999998777664
No 252
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=63.36 E-value=28 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=25.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecC
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
||+||....+-..+..+|++.|+.+.....
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~ 31 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRN 31 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEEC
Confidence 899999999999999999999987776553
No 253
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.69 E-value=83 Score=25.59 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=47.7
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC-CCCCC--H
Q 042079 20 PPHVLAVDDSIVD---RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC-MPGMT--G 93 (153)
Q Consensus 20 ~~~iLiidd~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~-~~~~~--g 93 (153)
..++.+++-|+.. ...+..+-+..++.+..+.+..+....+.. ...+|+||+|.- ....+ .
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-------------~~~~DlVlIDt~G~~~~d~~~ 317 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-------------LRDCDVILIDTAGRSQRDKRL 317 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-------------hCCCCEEEEeCCCCCCCCHHH
Confidence 4678888888732 234444444556666666666655444421 135899999962 22222 2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINEC 126 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a 126 (153)
.+-++.+-.....+.-.++++++........++
T Consensus 318 ~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 318 IEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 233333322111121235556665555555444
No 254
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=62.55 E-value=29 Score=26.14 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=38.6
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCC
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPL 139 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~ 139 (153)
.+.||++|+=.-.+...|-.-.|.+-+. ..+|.|+++........ ++++..-.+|+.-|.
T Consensus 58 ~~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~ 117 (277)
T PRK00994 58 EWKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKA 117 (277)
T ss_pred hhCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccchH-HHHHhcCCcEEEEec
Confidence 4679999986545555565555655432 36799999987665544 566665566665543
No 255
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.54 E-value=71 Score=24.75 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=57.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHh---c-C-c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKN---S-A-C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~---~-~-~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.|||-|+|......+...++. . + . ....+++.+++.+.+. ..+|+|++|-..|. .--+
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~---------------aGaDiImLDnmspe-~l~~ 241 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALA---------------HGAQSVLLDNFTLD-MMRE 241 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHH---------------cCCCEEEECCCCHH-HHHH
Confidence 588888887766544444332 1 1 2 2346788999888873 46899999964433 2223
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.++.++. + .++-.++.-+.+.+.+....|+|-.
T Consensus 242 av~~~~~-----~-~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 242 AVRVTAG-----R-AVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred HHHhhcC-----C-eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3333321 2 3566777778888888888898754
No 256
>PLN02591 tryptophan synthase
Probab=62.54 E-value=64 Score=24.26 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=59.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEec--CH-HHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC------CCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAE--NG-MRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG------MTG 93 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~--~~-~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~------~~g 93 (153)
++|.|-.......+....+..|.....+- +. .+-++.+.. .+..|=.++.-..-.+ .+-
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~------------~~~gFIY~Vs~~GvTG~~~~~~~~~ 177 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAE------------ASEGFVYLVSSTGVTGARASVSGRV 177 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH------------hCCCcEEEeeCCCCcCCCcCCchhH
Confidence 66667676666677777777776544322 22 223344321 1233333332221111 223
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
.++++++|+. .++|+++=.+-.+.+.+.++.+.|+|+.+.-.
T Consensus 178 ~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 5667888873 47899876666678888899999999887654
No 257
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=62.19 E-value=86 Score=25.57 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=39.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh------cCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE------GAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~------ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++--. ...-+..+++.+.. .+|+|. |.... ..+.... |..+++..|-+++++.+.+.+++
T Consensus 371 aDv~vlpS~-~Eg~p~~vlEAma~-----G~PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll 440 (475)
T cd03813 371 LDVLVLTSI-SEGQPLVILEAMAA-----GIPVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLL 440 (475)
T ss_pred CCEEEeCch-hhcCChHHHHHHHc-----CCCEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHh
Confidence 567765432 23345666676653 568764 43222 2334444 67889999999999988877764
No 258
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=61.93 E-value=41 Score=26.21 Aligned_cols=50 Identities=10% Similarity=0.261 Sum_probs=34.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQ 132 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~ 132 (153)
+..|++++--.+ .=+++++.+++.. ++|+.++--......+..|-..|..
T Consensus 232 EGAD~lMVKPal---~YLDIi~~~k~~~---~~PvaaYqVSGEYaMikaAa~~G~i 281 (314)
T cd00384 232 EGADILMVKPAL---AYLDIIRDVRERF---DLPVAAYNVSGEYAMIKAAAKNGWI 281 (314)
T ss_pred hCCCEEEEcCCc---hHHHHHHHHHHhc---CCCEEEEEccHHHHHHHHHHHcCCc
Confidence 468999988544 4478889998753 7899888665555555555555543
No 259
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=61.87 E-value=35 Score=26.65 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCcccEEEEeCCCCCCC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 76 GTKVNLVITDYCMPGMT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
...+|+|.+|......+ ..++++++++.. +.+|+++ ..-.+.+....+.+.|+|....
T Consensus 104 eagv~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 104 EAGVDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
No 260
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=61.84 E-value=39 Score=26.39 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=35.5
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM 133 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~ 133 (153)
+..|++++--.+ .=+++++.+++. .++|+.++--......+..|-..|..+
T Consensus 241 EGAD~lMVKPal---~YLDIi~~~k~~---~~lPvaaYqVSGEYaMikaAa~~G~~d 291 (322)
T PRK13384 241 EGADILMVKPGT---PYLDVLSRLRQE---THLPLAAYQVGGEYAMIKFAALAGALD 291 (322)
T ss_pred hCCCEEEEcCCc---hHHHHHHHHHhc---cCCCEEEEEchHHHHHHHHHHHcCCcc
Confidence 467999988544 447888888874 478998886655556556666666544
No 261
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=61.76 E-value=88 Score=25.59 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcE-EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH--H
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG--Y 94 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~-v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g--~ 94 (153)
...++.-++-.+......+.-.+..+.. +. .+.+..+...... ....||.||+| |...| -
T Consensus 314 ~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-------------~~~~~d~VvvD---PPR~G~~~ 377 (432)
T COG2265 314 RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-------------EGYKPDVVVVD---PPRAGADR 377 (432)
T ss_pred cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-------------ccCCCCEEEEC---CCCCCCCH
Confidence 3467888998888877777666666654 44 3455554444321 13578999999 33343 3
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
++++.|.+.. ...|+ +.+-+-...+.++...--..|
T Consensus 378 ~~lk~l~~~~---p~~Iv-YVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 378 EVLKQLAKLK---PKRIV-YVSCNPATLARDLAILASTGY 413 (432)
T ss_pred HHHHHHHhcC---CCcEE-EEeCCHHHHHHHHHHHHhCCe
Confidence 6888887643 22344 444444444444444433444
No 262
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.76 E-value=29 Score=28.94 Aligned_cols=72 Identities=17% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCcccEEEEeC-CCCCCCHHH-HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 75 NGTKVNLVITDY-CMPGMTGYE-LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 75 ~~~~~dlii~D~-~~~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
...++.++|+|- +|-..+.+. +++.|.+ . .+.+.+|+.|. +.......+..-+.-|-.+|++..++...+.+
T Consensus 116 ~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-p-p~~~~fIlatt--d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~ 189 (509)
T PRK14958 116 TKGRFKVYLIDEVHMLSGHSFNALLKTLEE-P-PSHVKFILATT--DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQH 189 (509)
T ss_pred ccCCcEEEEEEChHhcCHHHHHHHHHHHhc-c-CCCeEEEEEEC--ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 345688999973 443333443 3444443 2 13566666663 33333334555566677899999988765554
No 263
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.62 E-value=72 Score=24.53 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=57.3
Q ss_pred eEEEEeCCHHHH--H--HHHHHHH----hcCc---EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 22 HVLAVDDSIVDR--K--IVENLLK----NSAC---KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 22 ~iLiidd~~~~~--~--~l~~~l~----~~~~---~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
.|||-|+|.... . .+...++ ..++ ....+++.+++.+.+. ..+|+|++|-..|.
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~---------------~gaDiImLDn~s~e 225 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA---------------AGVDTIMLDNFSLD 225 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh---------------cCCCEEEECCCCHH
Confidence 589989987753 1 2333333 3332 2457889999888772 46899999953332
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 91 MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 91 ~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+--+.++.++. . ..+-.++.-+.+.+.+....|+|-.
T Consensus 226 -~l~~av~~~~~-----~-~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 226 -DLREGVELVDG-----R-AIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred -HHHHHHHHhCC-----C-eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 22233333332 2 3667777778888888888888754
No 264
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=61.32 E-value=62 Score=26.21 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=37.8
Q ss_pred cccEEEEeC-CCC---CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 78 KVNLVITDY-CMP---GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 78 ~~dlii~D~-~~~---~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..|+|++.. ... ....++.++++.+....+..+ |++++........++.+. .++++..+-....+.+++..+
T Consensus 37 ~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~-vvv~Gc~a~~~~ee~~~~-~~d~vvg~~~~~~~~~~l~~~ 112 (434)
T PRK14330 37 EADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLI-IGVAGCVAEKEREKLLKR-GADFVIGTRAVPKVTEAVKRA 112 (434)
T ss_pred cCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCE-EEEECccccCchhhHHhc-CCcEEEcCCCHHHHHHHHHHH
Confidence 478999863 122 224566666663211112444 445554333333455555 455666776677776666543
No 265
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=61.11 E-value=65 Score=24.40 Aligned_cols=93 Identities=19% Similarity=0.133 Sum_probs=55.8
Q ss_pred eEEEEeCCHHHHHHHH----HHHHhcC---cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIVE----NLLKNSA---CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~----~~l~~~~---~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.+||-|+|......+. .+-+..+ .....+++..++.+.+. ..+|+|.+|-..|+ .--
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~---------------~gaD~I~ld~~~~e-~l~ 216 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALE---------------AGADIIMLDNMSPE-ELK 216 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHH---------------cCCCEEEECCCCHH-HHH
Confidence 5788888865553322 2222233 23457888888887762 35899999875442 111
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.++.++.. +++|+. .++.-+.+.+.+....|++.+
T Consensus 217 ~~v~~i~~~---~~i~i~-asGGIt~~ni~~~a~~Gad~I 252 (269)
T cd01568 217 EAVKLLKGL---PRVLLE-ASGGITLENIRAYAETGVDVI 252 (269)
T ss_pred HHHHHhccC---CCeEEE-EECCCCHHHHHHHHHcCCCEE
Confidence 122333321 356654 455567888889999999876
No 266
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=61.09 E-value=85 Score=25.34 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=36.4
Q ss_pred cccEEEEeC-CCCC---CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHH-Hh-cCcccccCCCChhHHHHHHhh
Q 042079 78 KVNLVITDY-CMPG---MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECL-EE-GAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 78 ~~dlii~D~-~~~~---~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~-~~-ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+|++++.. .... ....+.++++++.. +..+.|++++........+++ +. ++| ++..+-....+.+++..
T Consensus 36 ~aD~v~intC~v~~~a~~~~~~~i~~~~~~~--~~~~~vvvgGc~a~~~~ee~~~~~~~vd-~vvg~~~~~~~~~~l~~ 111 (429)
T TIGR00089 36 EADVIIINTCAVREKAEQKVRSRLGELAKLK--KKNAKIVVAGCLAQREGEELLKRIPEVD-IVLGPQNKERIPEAIES 111 (429)
T ss_pred cCCEEEEecceeechHHHHHHHHHHHHHHhC--cCCCEEEEECcccccCHHHHHhhCCCCC-EEECCCCHHHHHHHHHH
Confidence 479999873 2222 24566677776543 222245565543333333433 22 455 45566666666666554
No 267
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=60.71 E-value=17 Score=26.89 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=40.8
Q ss_pred cEEEEeCCCCCC---CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 80 NLVITDYCMPGM---TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 80 dlii~D~~~~~~---~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|+.|+..-++ ..+++++.+.+. ..+|+++-.+-.+.+++.++++.|++..+.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 588888865432 236777888763 368999888788899999999999988754
No 268
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=60.57 E-value=99 Score=25.76 Aligned_cols=97 Identities=12% Similarity=0.176 Sum_probs=54.4
Q ss_pred eCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH----H---HHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG----Y---ELLKK 99 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g----~---~~~~~ 99 (153)
--|....+.+...|...||.+.. + ....|+++++..--..+. . ..++.
T Consensus 24 ~~N~~dse~~~~~L~~~G~~~~~--~-----------------------~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~ 78 (502)
T PRK14326 24 QMNVHDSERLAGLLEAAGYVRAA--E-----------------------GQDADVVVFNTCAVRENADNRLYGNLGHLAP 78 (502)
T ss_pred CCcHHHHHHHHHHHHHCCCEECC--C-----------------------cCCCCEEEEECCCeeehHHHHHHHHHHHHHH
Confidence 34666777788888888876532 1 124689999865544332 2 33444
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHh-cCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEE-GAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~-ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.++|+ +++........++++. .-.|++..+-....+.+++.++
T Consensus 79 ~k~~~--p~~~Vv-vgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~ 128 (502)
T PRK14326 79 VKRAN--PGMQIA-VGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERA 128 (502)
T ss_pred HHHhC--CCCEEE-EECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHH
Confidence 44432 455555 5443333333444432 3334667777777777766543
No 269
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=60.54 E-value=33 Score=28.54 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=39.5
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...|+|.+|..-... ..++.+++|++.. +.++|++ ..-.+.+....+.+.|++.+.
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~--~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNY--PHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhC--CCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 468999999853322 3478899999753 4566554 344467788889999999763
No 270
>PLN02823 spermine synthase
Probab=60.49 E-value=58 Score=25.64 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=42.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-----CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-----ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-----~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
+..++-+||-|+...+..+..+... +-.+. ...|+...++. ...+||+||+|...|..
T Consensus 126 ~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---------------~~~~yDvIi~D~~dp~~~ 190 (336)
T PLN02823 126 TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---------------RDEKFDVIIGDLADPVEG 190 (336)
T ss_pred CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh---------------CCCCccEEEecCCCcccc
Confidence 3467899999999998888877532 11232 34444444432 23579999999765531
Q ss_pred ------CHHHHHH-HHHh
Q 042079 92 ------TGYELLK-KIKE 102 (153)
Q Consensus 92 ------~g~~~~~-~lr~ 102 (153)
-..+|.+ .+++
T Consensus 191 ~~~~~Lyt~eF~~~~~~~ 208 (336)
T PLN02823 191 GPCYQLYTKSFYERIVKP 208 (336)
T ss_pred CcchhhccHHHHHHHHHH
Confidence 1346676 5554
No 271
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=60.42 E-value=65 Score=23.65 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=37.3
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 81 LVITDYCMP---GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 81 lii~D~~~~---~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
+++.|+.-. ...-+++++++++.. .+|+++-.+-.+.+.+.+++..|++..+
T Consensus 44 i~i~d~~~~~~~~~~~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~ 98 (243)
T cd04731 44 LVFLDITASSEGRETMLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVS 98 (243)
T ss_pred EEEEcCCcccccCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEE
Confidence 667777532 123467788888743 6899988887888888999988887653
No 272
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.12 E-value=47 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.354 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++++|+.. +..+|.+-. .+.++..+|.+.|+|..+.--++++++++.+..
T Consensus 187 ~~ai~~~r~~~--~~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~ 239 (289)
T PRK07896 187 VAALRAVRAAA--PDLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQR 239 (289)
T ss_pred HHHHHHHHHhC--CCCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 46677777643 456766555 466788899999999999999999999988764
No 273
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=60.03 E-value=54 Score=23.29 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=26.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGM 54 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~ 54 (153)
|+|+|-.......+.+.|++.|+.+....+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 57888888888889999999999888888643
No 274
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=59.81 E-value=52 Score=25.55 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=35.2
Q ss_pred CCcccEEEEeCCCC-----------CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 76 GTKVNLVITDYCMP-----------GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 76 ~~~~dlii~D~~~~-----------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+.+.+|++|+.-. +....++++.|++. .+++.+.|+..........-..|...|+
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~Lkek----GikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKR----GCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred cccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHC----CCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 45788999987321 12345778888764 4678777766544444444566777654
No 275
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=59.76 E-value=51 Score=25.72 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=41.6
Q ss_pred CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC
Q 042079 52 NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA 131 (153)
Q Consensus 52 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga 131 (153)
+..||++.+.... .+..|++++--.+| =+++++++++.. ++|+..+--......+..|...|-
T Consensus 231 N~~EAlrE~~lD~-----------~EGAD~lMVKPal~---YLDIi~~vk~~~---~lP~~AYqVSGEYaMikAAa~nGw 293 (330)
T COG0113 231 NRREALREIELDI-----------EEGADILMVKPALP---YLDIIRRVKEEF---NLPVAAYQVSGEYAMIKAAAQNGW 293 (330)
T ss_pred CHHHHHHHHHhhH-----------hcCCcEEEEcCCch---HHHHHHHHHHhc---CCCeEEEecchHHHHHHHHHHcCC
Confidence 5666766553221 34689999885554 478888888754 689988876656666666655553
No 276
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=59.61 E-value=90 Score=24.99 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=45.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..|..+|-++.....++.-++..+.. +..... ++...+.. ...+||+|++|- ++ ....+++.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~--Da~~~l~~------------~~~~fDvIdlDP--fG-s~~~fld~ 132 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNE--DAANVLRY------------RNRKFHVIDIDP--FG-TPAPFVDS 132 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEch--hHHHHHHH------------hCCCCCEEEeCC--CC-CcHHHHHH
Confidence 57999999999998888777655542 333222 22233310 124699999996 33 22355554
Q ss_pred HHhccCCCCCcEEEEeCCCC
Q 042079 100 IKESSVMKEVPVVVVSSENI 119 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~ 119 (153)
.-+.- .+--++.+|+.+.
T Consensus 133 al~~~--~~~glL~vTaTD~ 150 (374)
T TIGR00308 133 AIQAS--AERGLLLVTATDT 150 (374)
T ss_pred HHHhc--ccCCEEEEEeccc
Confidence 43211 2234677775443
No 277
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=59.51 E-value=30 Score=27.10 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=40.3
Q ss_pred CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC
Q 042079 52 NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA 131 (153)
Q Consensus 52 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga 131 (153)
+..||+....... .+..|++++--.|| =+++++++++.. ++|+..+--......+..|-+.|.
T Consensus 228 N~~EAlre~~~D~-----------~EGAD~lMVKPal~---YLDIi~~~k~~~---~~P~~aYqVSGEYaMikaAa~~G~ 290 (324)
T PF00490_consen 228 NRREALREAELDI-----------EEGADILMVKPALP---YLDIIRRVKERF---DLPVAAYQVSGEYAMIKAAAQNGW 290 (324)
T ss_dssp -HHHHHHHHHHHH-----------HTT-SEEEEESSGG---GHHHHHHHHHHC---TS-EEEEETHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHhhhhH-----------hhCCCEEEeecchh---HHHHHHHHHHhc---CCCEEEEEehHHHHHHHHHHHCCC
Confidence 5666766553221 24579999985554 488899999864 789988865555555566666654
Q ss_pred cc
Q 042079 132 QM 133 (153)
Q Consensus 132 ~~ 133 (153)
.+
T Consensus 291 ~d 292 (324)
T PF00490_consen 291 ID 292 (324)
T ss_dssp S-
T ss_pred cc
Confidence 43
No 278
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=59.48 E-value=53 Score=22.98 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=44.5
Q ss_pred EEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CC---HHHHHHH
Q 042079 24 LAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MT---GYELLKK 99 (153)
Q Consensus 24 Liidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~---g~~~~~~ 99 (153)
||+|........+.+.+++.+..+....-..+...... ....+|.|++--.... .+ ..+++++
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~-------------~~~~~d~iii~Gg~~~~~d~~~~~~~i~~ 67 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLE-------------DLDDYDGIIISGGPGSPYDIEGLIELIRE 67 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHH-------------HTTTSSEEEEECESSSTTSHHHHHHHHHH
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhh-------------hhcCCCEEEECCcCCcccccccccccccc
Confidence 68999999999999999999976665553322211110 0135677776432222 22 2334444
Q ss_pred HHhccCCCCCcEEEEeC
Q 042079 100 IKESSVMKEVPVVVVSS 116 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~ 116 (153)
+++ ..+|++-+.-
T Consensus 68 ~~~----~~~PilGIC~ 80 (192)
T PF00117_consen 68 ARE----RKIPILGICL 80 (192)
T ss_dssp HHH----TTSEEEEETH
T ss_pred ccc----cceEEEEEee
Confidence 444 4689887763
No 279
>PRK08185 hypothetical protein; Provisional
Probab=59.46 E-value=68 Score=24.67 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=43.6
Q ss_pred ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC------C----CCCCCHHHHHHHHHhccCCCCCcEEEEeCCC-
Q 042079 50 AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY------C----MPGMTGYELLKKIKESSVMKEVPVVVVSSEN- 118 (153)
Q Consensus 50 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~------~----~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~- 118 (153)
..+.+++.++.. .+.+|.+-+.+ . -|..+ +++++.|++.. .+|+++..+..
T Consensus 148 ~t~peea~~f~~--------------~TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~---~iPLVlHGgsg~ 209 (283)
T PRK08185 148 YTDPEQAEDFVS--------------RTGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERV---DIPLVLHGGSAN 209 (283)
T ss_pred CCCHHHHHHHHH--------------hhCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhh---CCCEEEECCCCC
Confidence 346666666652 34688887732 1 24444 88999998743 68999887764
Q ss_pred ChhhHHHHHHhcCc
Q 042079 119 IPTRINECLEEGAQ 132 (153)
Q Consensus 119 ~~~~~~~a~~~ga~ 132 (153)
.++...+|.+.|+.
T Consensus 210 ~~e~~~~ai~~GI~ 223 (283)
T PRK08185 210 PDAEIAESVQLGVG 223 (283)
T ss_pred CHHHHHHHHHCCCe
Confidence 56667788888874
No 280
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=59.41 E-value=60 Score=22.90 Aligned_cols=83 Identities=24% Similarity=0.262 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCcEEE----EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-C----CCCHHHHHHHHHhcc
Q 042079 34 KIVENLLKNSACKVT----TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-P----GMTGYELLKKIKESS 104 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-~----~~~g~~~~~~lr~~~ 104 (153)
..+.+..++.|..+. ...+..+..... ....|.+.+...- + ...+.+.++.+++.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~---------------~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~- 156 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL---------------KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL- 156 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH---------------HCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-
Confidence 344455555665543 455667666533 2357888774211 1 23456777777753
Q ss_pred CCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 105 VMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 105 ~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.++|+++..+- +.+...++++.|++.++
T Consensus 157 --~~~~i~~~GGI-~~~~i~~~~~~Gad~vv 184 (202)
T cd04726 157 --LGVKVAVAGGI-TPDTLPEFKKAGADIVI 184 (202)
T ss_pred --cCCCEEEECCc-CHHHHHHHHhcCCCEEE
Confidence 36777755554 58888999999998764
No 281
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=59.38 E-value=36 Score=25.96 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc------cccCCCChhHHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM------FMLKPLKPSDVKK 146 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~------~l~KP~~~~~l~~ 146 (153)
++.++++++. .++|||....-.+.+.+.+++..||+. ++.+|.-..++.+
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHH
Confidence 3566677763 258999888888899999999999876 5667755555543
No 282
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=59.21 E-value=50 Score=25.58 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++++|+.. +..+|.+-. .+.++..++.+.|+|..+.--++++++++.+..
T Consensus 196 ~~av~~~r~~~--~~~kIeVEv--~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~ 248 (296)
T PRK09016 196 RQAVEKAFWLH--PDVPVEVEV--ENLDELDQALKAGADIIMLDNFTTEQMREAVKR 248 (296)
T ss_pred HHHHHHHHHhC--CCCCEEEEe--CCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Confidence 45666777543 456765555 468888999999999999999999999988764
No 283
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=59.14 E-value=78 Score=24.11 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=46.6
Q ss_pred EEEeCCCCCCCH-----HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc-----cCCCChhHHHHHHhh
Q 042079 82 VITDYCMPGMTG-----YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM-----LKPLKPSDVKKLTGH 150 (153)
Q Consensus 82 ii~D~~~~~~~g-----~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l-----~KP~~~~~l~~~~~~ 150 (153)
.+|=+..|-.+| ...++.|++. +++|+|+-++-..+++...+++.|+++.+ .|--++.++.+.+.+
T Consensus 161 aVMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~ 236 (267)
T CHL00162 161 TVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKL 236 (267)
T ss_pred EEeeccCcccCCCCCCCHHHHHHHHHc---CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHH
Confidence 445555554333 3567777764 46999999888899999999999999874 355666666655543
No 284
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.12 E-value=82 Score=24.36 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=58.3
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcCc---EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSAC---KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~~---~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.|||-|+|......+...++ ..++ ....+++.+++.+.+. ..+|+|++|-..|. +--
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~---------------agaDiImLDnmspe-~l~ 232 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA---------------AGADIIMLDNMSLE-QIE 232 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH---------------cCCCEEEECCCCHH-HHH
Confidence 58999998777654444443 2331 2346789999888873 45899999964433 222
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.++.++. + .++-.++.-+.+.+.+....|+|-.
T Consensus 233 ~av~~~~~-----~-~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 233 QAITLIAG-----R-SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred HHHHHhcC-----c-eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 33333331 2 3566777778888888888888754
No 285
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=59.04 E-value=43 Score=25.13 Aligned_cols=53 Identities=25% Similarity=0.494 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-C------cccccCCCChhHHHHHHh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG-A------QMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a------~~~l~KP~~~~~l~~~~~ 149 (153)
+++++.++.. -++|+|.-.+-...++..+++..| + .-|..+-++..++++-+.
T Consensus 188 l~l~~~v~~~---v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL~ 247 (256)
T COG0107 188 LELTRAVREA---VNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYLA 247 (256)
T ss_pred HHHHHHHHHh---CCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHHH
Confidence 4566777764 479999888888899999999777 3 446667788888887554
No 286
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=58.82 E-value=28 Score=25.65 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM 88 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~ 88 (153)
..++.-+|-++......++.++..|+. +. ...+..+.+..+... ....+||+|++|..-
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~----------~~~~~fD~VfiDa~k 154 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN----------DPKPEFDFAFVDADK 154 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC----------CCCCCCCEEEECCCH
Confidence 458999999999999999988887753 22 344555555443100 013579999999753
No 287
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=58.71 E-value=29 Score=29.12 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=27.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
++||+||....+-..+.++|+..|+.+..+.+
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~ 33 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRN 33 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEEC
Confidence 47999999999999999999998877766554
No 288
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=58.46 E-value=35 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
|||+|........+..+|++.|+.+......
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 31 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRND 31 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCC
Confidence 6889988888889999999989877665543
No 289
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.22 E-value=41 Score=25.91 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
...+++|+........-+..+|.+.|..|+.+.+...-+... ....|+++.-..-|..-.-+
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~---------------~~~ADIvV~AvG~p~~i~~~ 217 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFY---------------TQNADIVCVGVGKPDLIKAS 217 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHH---------------HHhCCEEEEecCCCCcCCHH
Confidence 468999999999999999999988899888887655444322 13579999998887765444
No 290
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=58.22 E-value=87 Score=24.40 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=50.5
Q ss_pred HHHHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC-CC----C-CC-CHHHHHHHHHhccCCCCC
Q 042079 38 NLLKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY-CM----P-GM-TGYELLKKIKESSVMKEV 109 (153)
Q Consensus 38 ~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~-~~----~-~~-~g~~~~~~lr~~~~~~~~ 109 (153)
..++..|..+ ..+.+..++..... ..+|.|++-- .- . .. +-+.++..+++.. ++
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~---------------~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~i 191 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAK---------------AGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DI 191 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHH---------------TT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS
T ss_pred HHHHHcCCccccccCCHHHHHHhhh---------------cCCCEEEEeccccCCCCCccccceeeHHHHHhhhc---CC
Confidence 4466667654 47889998877662 3589998752 22 1 22 3577777887643 58
Q ss_pred cEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 110 PVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 110 pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
|||+-.+-.+...+..++..||+...
T Consensus 192 PViaAGGI~dg~~iaaal~lGA~gV~ 217 (330)
T PF03060_consen 192 PVIAAGGIADGRGIAAALALGADGVQ 217 (330)
T ss_dssp -EEEESS--SHHHHHHHHHCT-SEEE
T ss_pred cEEEecCcCCHHHHHHHHHcCCCEee
Confidence 99987777788888999999998764
No 291
>PRK08005 epimerase; Validated
Probab=57.93 E-value=37 Score=24.82 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=35.5
Q ss_pred cccEEEEeCCCCCCCHHHHHH----HHHhccCC-CCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPGMTGYELLK----KIKESSVM-KEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~----~lr~~~~~-~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..|.|++=..-|+..|..|+. ++++.... +.. -|-+=+.-+.+.+..+.+.||+.++
T Consensus 128 ~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~-~I~VDGGI~~~~i~~l~~aGad~~V 189 (210)
T PRK08005 128 QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA-ECWADGGITLRAARLLAAAGAQHLV 189 (210)
T ss_pred hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccC-CEEEECCCCHHHHHHHHHCCCCEEE
Confidence 367776555567777766653 44432111 222 2556666678888899999999553
No 292
>PRK03612 spermidine synthase; Provisional
Probab=57.79 E-value=1.1e+02 Score=25.66 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=40.6
Q ss_pred CeEEEEeCCHHHHHHHHH--HHHhc------CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 21 PHVLAVDDSIVDRKIVEN--LLKNS------ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~--~l~~~------~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
.++..+|-|+...+..++ .+... +-.+. ...|+.+.+... ..+||+|++|...|..
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---------------~~~fDvIi~D~~~~~~ 386 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---------------AEKFDVIIVDLPDPSN 386 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---------------CCCCCEEEEeCCCCCC
Confidence 688999999988887776 33211 11232 334444433322 3579999999766543
Q ss_pred C------HHHHHHHHHhc
Q 042079 92 T------GYELLKKIKES 103 (153)
Q Consensus 92 ~------g~~~~~~lr~~ 103 (153)
. ..++++.+++.
T Consensus 387 ~~~~~L~t~ef~~~~~~~ 404 (521)
T PRK03612 387 PALGKLYSVEFYRLLKRR 404 (521)
T ss_pred cchhccchHHHHHHHHHh
Confidence 2 23577777654
No 293
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=57.78 E-value=65 Score=22.80 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhccCCCCCcE-EEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 92 TGYELLKKIKESSVMKEVPV-VVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pi-i~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
.+++.++.+++. .+.|+ +.+...+.......+.+.|++.........++....+
T Consensus 43 ~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 578888888863 24454 3233334556677778899988655544334444433
No 294
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.43 E-value=63 Score=22.55 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CcEEEEecCH-------HHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS--ACKVTTAENG-------MRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~--~~~v~~~~~~-------~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
..+|.++...+.....+...|++. +..+..+.++ .+.+..+ +...+|+|++.+..|.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I--------------~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRI--------------NASGPDIVFVGLGAPK 113 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHH--------------HHcCCCEEEEECCCCH
Confidence 468999999998888888888765 4455443332 2233333 2467999999998887
Q ss_pred CCHHHHHHHHHhc
Q 042079 91 MTGYELLKKIKES 103 (153)
Q Consensus 91 ~~g~~~~~~lr~~ 103 (153)
.. .++...++.
T Consensus 114 QE--~~~~~~~~~ 124 (172)
T PF03808_consen 114 QE--RWIARHRQR 124 (172)
T ss_pred HH--HHHHHHHHH
Confidence 44 456666654
No 295
>PRK12704 phosphodiesterase; Provisional
Probab=56.88 E-value=19 Score=30.14 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=31.3
Q ss_pred cEEEEeCCCChh--hHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 110 PVVVVSSENIPT--RINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 110 pii~~t~~~~~~--~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
.+|++|+.+... ....+++.++.|+..||+..+++..-..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~ 292 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKAR 292 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHH
Confidence 466677765544 6778999999999999999999875443
No 296
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=56.78 E-value=19 Score=27.34 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=26.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEe
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTA 50 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~ 50 (153)
|+|||+..+-.....+...|...|+.+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe
Confidence 589999999999999999999888877765
No 297
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=56.70 E-value=74 Score=23.07 Aligned_cols=56 Identities=14% Similarity=0.318 Sum_probs=38.7
Q ss_pred cccEEEEeCCCCC-------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVNLVITDYCMPG-------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~dlii~D~~~~~-------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|.++++-.-++ ...+++++++++.. ++|+++..+-...+...+++..|++.+..
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 4788887542111 14577888887642 67998877766668888999999987643
No 298
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=56.61 E-value=59 Score=23.42 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=41.3
Q ss_pred eEEEEeCC---------HHHHHHHHHHHH-hcCcEEEEecCHHHHH-HHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 22 HVLAVDDS---------IVDRKIVENLLK-NSACKVTTAENGMRAL-EFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 22 ~iLiidd~---------~~~~~~l~~~l~-~~~~~v~~~~~~~~a~-~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
+|||+... +.....+..+++ ..++++....+....- +.+ ..+|+||+.....+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----------------~~~Dvvv~~~~~~~ 64 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----------------KGYDVVVFYNTGGD 64 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----------------CT-SEEEEE-SSCC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----------------cCCCEEEEECCCCC
Confidence 46666665 256678888888 6789998877744321 122 36899999877643
Q ss_pred -CCHHHHHHHHHhccCCCCCcEEEEe
Q 042079 91 -MTGYELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 91 -~~g~~~~~~lr~~~~~~~~pii~~t 115 (153)
.+ -+..+.|++.- ....++|.+=
T Consensus 65 ~l~-~~~~~al~~~v-~~Ggglv~lH 88 (217)
T PF06283_consen 65 ELT-DEQRAALRDYV-ENGGGLVGLH 88 (217)
T ss_dssp GS--HHHHHHHHHHH-HTT-EEEEEG
T ss_pred cCC-HHHHHHHHHHH-HcCCCEEEEc
Confidence 22 22223332211 1245777664
No 299
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.59 E-value=33 Score=28.51 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=43.5
Q ss_pred CcccEEEEe-CCCCCCCHHHHH-HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITD-YCMPGMTGYELL-KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D-~~~~~~~g~~~~-~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++.++|+| +++-...+++.+ +.+.+ .. ..+.+|+.| .....+...+..-+..|-.+|++..++.+.+.+.
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEE-Pp-~~viFILaT--te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i 192 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEE-PP-AHIVFILAT--TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKL 192 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhc-CC-CceEEEeec--CChhhccHHHHhhhheeeecCCCHHHHHHHHHHH
Confidence 457788887 444444444433 33322 21 233333333 3455566777888888999999999998877664
No 300
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=56.32 E-value=52 Score=24.04 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=32.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRA 56 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a 56 (153)
++|.|||=...+...+...|++.|+++....+.++.
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 578999999999999999999999999999988874
No 301
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=56.22 E-value=92 Score=24.03 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEE--EecCH---HHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC---
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVT--TAENG---MRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP--- 89 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~--~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~--- 89 (153)
..+-+||=+|.|+...+..-..-++.+..+. .+... ....+++ ...+||++++--+..
T Consensus 103 ~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll--------------~~~~PDIlViTGHD~~~K 168 (287)
T PF05582_consen 103 ERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL--------------EEYRPDILVITGHDGYLK 168 (287)
T ss_pred CCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH--------------HHcCCCEEEEeCchhhhc
Confidence 4557899999999999888888888776433 22222 2233333 246899999732211
Q ss_pred ------C----CCHHHHHHH---HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 90 ------G----MTGYELLKK---IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 90 ------~----~~g~~~~~~---lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
+ .+.--|++. .|+..+..+ -++++++-. .+.-+..+++||+ |=+.|
T Consensus 169 ~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D-~LVIfAGAC-QS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 169 NKKDYSDLNNYRNSKYFVEAVKEARKYEPNLD-DLVIFAGAC-QSHFEALLEAGAN-FASSP 227 (287)
T ss_pred CCCChhhhhhhhccHHHHHHHHHHHhcCCCcc-cEEEEcchh-HHHHHHHHHcCcc-ccCCc
Confidence 1 122234444 444322112 455566543 3445677889986 55555
No 302
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=56.18 E-value=42 Score=25.57 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=29.2
Q ss_pred CcccEEEEeCC-------CCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChh
Q 042079 77 TKVNLVITDYC-------MPGMTGYELLKKIKESSVMKEVPVVVVSSENIPT 121 (153)
Q Consensus 77 ~~~dlii~D~~-------~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~ 121 (153)
..+|.+++|+. -+-..+.++++.|++. ..|++++|+.....
T Consensus 6 ~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~----g~~~iflTNn~~~s 53 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAA----GKPVIFLTNNSTRS 53 (269)
T ss_pred hhcCEEEEcCcCceEeCCccCchHHHHHHHHHHc----CCeEEEEeCCCCCC
Confidence 35788998862 1223568889999874 57999999976533
No 303
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=56.10 E-value=27 Score=24.42 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=40.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
....+++|+.......+=+..+|.+.+..|..++....-++.. ....|+|+.-..-|..
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~---------------~~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEI---------------TRRADIVVSAVGKPNL 92 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHH---------------HTTSSEEEE-SSSTT-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccce---------------eeeccEEeeeeccccc
Confidence 3568999999999999999999999999998887654333222 1346899988877664
No 304
>PLN02366 spermidine synthase
Probab=55.58 E-value=96 Score=24.07 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=40.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC-
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS-----ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT- 92 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~-----~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~- 92 (153)
..+|-++|-++...+..++.+... +-.+. ...++.+.++.. ...+||+||+|...|...
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~--------------~~~~yDvIi~D~~dp~~~~ 180 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA--------------PEGTYDAIIVDSSDPVGPA 180 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc--------------cCCCCCEEEEcCCCCCCch
Confidence 356888888887777777766432 11232 234444333322 134699999998766432
Q ss_pred ----HHHHHHHHHhc
Q 042079 93 ----GYELLKKIKES 103 (153)
Q Consensus 93 ----g~~~~~~lr~~ 103 (153)
..+|++.+++.
T Consensus 181 ~~L~t~ef~~~~~~~ 195 (308)
T PLN02366 181 QELFEKPFFESVARA 195 (308)
T ss_pred hhhhHHHHHHHHHHh
Confidence 23567777653
No 305
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.07 E-value=45 Score=29.04 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=42.3
Q ss_pred CCcccEEEEe-CCCCCCCHHHHH-HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 76 GTKVNLVITD-YCMPGMTGYELL-KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 76 ~~~~dlii~D-~~~~~~~g~~~~-~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..++.++|+| +++-...+...+ +.|.+ .. ..+.+|+.+.. .......+..-+.-|-.+|++..++...+.+.
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEE-PP-~~v~FILaTtd--~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~I 189 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEE-PP-EHVKFLFATTD--PQKLPITVISRCLQFTLRPLAVDEITKHLGAI 189 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhc-CC-CCcEEEEEECC--hHhhhHHHHHhhheeeccCCCHHHHHHHHHHH
Confidence 3467899998 444443444443 33443 21 35666666632 23333334455667778999999998777653
No 306
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=54.92 E-value=34 Score=27.06 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=29.6
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCC
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENI 119 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~ 119 (153)
.+||++++ ++.|+++ +.+.+.+|+.. +.+|++-+.++.-
T Consensus 75 ~~pd~~i~-iD~p~Fn-l~lak~~k~~~--~~i~viyyi~Pqv 113 (347)
T PRK14089 75 KQADKVLL-MDSSSFN-IPLAKKIKKAY--PKKEIIYYILPQV 113 (347)
T ss_pred cCCCEEEE-eCCCCCC-HHHHHHHHhcC--CCCCEEEEECccc
Confidence 46888876 5568888 56888898754 5789999988753
No 307
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=54.56 E-value=90 Score=23.42 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC 87 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~ 87 (153)
..++.-+|-++......+..+++.|+. +. ...+..+.+..+... .....+||+||+|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~---------~~~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIED---------GKYHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhc---------cccCCcccEEEecCC
Confidence 468999999999998889999988752 32 344555555544100 001257999999975
No 308
>PRK04302 triosephosphate isomerase; Provisional
Probab=54.52 E-value=82 Score=22.95 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=29.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.++++.+|+.. .++|++.-.+-.+++....+.+.|+|+++.
T Consensus 161 ~~~~~~ir~~~--~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 161 EDAVEAVKKVN--PDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred HHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 34555666532 367888777666788888888999998754
No 309
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=54.48 E-value=22 Score=25.88 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=36.2
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 81 LVITDYCMPGM---TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 81 lii~D~~~~~~---~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
+++.+....+. ..+++++.+++. .++|+++-..-.+.+.+.++++.|++.++
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 44556533221 236788888764 36899888877788889999999998753
No 310
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=54.34 E-value=1.5e+02 Score=26.07 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=47.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-C--cEEEEecCH---HHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC--CCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-A--CKVTTAENG---MRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC--MPG 90 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~--~~v~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~--~~~ 90 (153)
..++||+||....+...+.++|++. + +.+..+... .+.+..+ ..||.||+--. .|.
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l----------------~~~D~VVIspGPG~p~ 67 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELL----------------PLFDAIVVGPGPGNPN 67 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhh----------------cCCCEEEECCCCCCcc
Confidence 4578999999988887888888764 2 444443322 2222222 24788887432 222
Q ss_pred C-CHHHHHHHHHhccCCCCCcEEEEeC
Q 042079 91 M-TGYELLKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 91 ~-~g~~~~~~lr~~~~~~~~pii~~t~ 116 (153)
. .-..+++.+.+......+|++-+.-
T Consensus 68 ~~~~~~i~~~i~~~~~~~~iPvLGICl 94 (742)
T TIGR01823 68 NAQDMGIISELWELANLDEVPVLGICL 94 (742)
T ss_pred chhhhHHHHHHHHhcccCCCcEEEEch
Confidence 1 2345666665432113589887764
No 311
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=54.22 E-value=87 Score=23.15 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=51.6
Q ss_pred EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEE---eC----CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCC
Q 042079 47 VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVIT---DY----CMPGMTGYELLKKIKESSVMKEVPVVVVSSENI 119 (153)
Q Consensus 47 v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~---D~----~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~ 119 (153)
.--+++.+|++... ...+|+|=. .+ .-|...-+++++.+.+ ..+++|.=.-..+
T Consensus 131 MAD~St~ee~l~a~---------------~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~----~~~~vIAEGr~~t 191 (229)
T COG3010 131 MADCSTFEEGLNAH---------------KLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD----AGCRVIAEGRYNT 191 (229)
T ss_pred EeccCCHHHHHHHH---------------HcCCcEEecccccccCCCCCCCCCcHHHHHHHHh----CCCeEEeeCCCCC
Confidence 33567777777654 245787743 22 2244566889999887 3678888888889
Q ss_pred hhhHHHHHHhcCcccccC
Q 042079 120 PTRINECLEEGAQMFMLK 137 (153)
Q Consensus 120 ~~~~~~a~~~ga~~~l~K 137 (153)
++...++++.|++..++-
T Consensus 192 P~~Ak~a~~~Ga~aVvVG 209 (229)
T COG3010 192 PEQAKKAIEIGADAVVVG 209 (229)
T ss_pred HHHHHHHHHhCCeEEEEC
Confidence 999999999999987543
No 312
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=54.14 E-value=1e+02 Score=23.82 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=45.1
Q ss_pred cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC-----CCC---CCHHHHHHHHHhccCCCCCcEEEEeCCC-Chh
Q 042079 51 ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC-----MPG---MTGYELLKKIKESSVMKEVPVVVVSSEN-IPT 121 (153)
Q Consensus 51 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~-----~~~---~~g~~~~~~lr~~~~~~~~pii~~t~~~-~~~ 121 (153)
++.+++.++. .+.+|.+=+.+. .+. .-+++.++++++.. ..+|+++..+.. ..+
T Consensus 154 t~peea~~f~---------------~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~--~~iPlVlhGGSGi~~e 216 (293)
T PRK07315 154 APIEDAKAMV---------------ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV--PGFPIVLHGGSGIPDD 216 (293)
T ss_pred CCHHHHHHHH---------------HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc--cCCCEEEECCCCCCHH
Confidence 5666666655 246888877731 122 24688999998753 358998887743 567
Q ss_pred hHHHHHHhcCccc
Q 042079 122 RINECLEEGAQMF 134 (153)
Q Consensus 122 ~~~~a~~~ga~~~ 134 (153)
...++.+.|+..+
T Consensus 217 ~~~~~i~~Gi~Ki 229 (293)
T PRK07315 217 QIQEAIKLGVAKV 229 (293)
T ss_pred HHHHHHHcCCCEE
Confidence 7788899998543
No 313
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.08 E-value=1.2e+02 Score=24.85 Aligned_cols=95 Identities=11% Similarity=0.020 Sum_probs=43.9
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC--CCCC-CCH
Q 042079 20 PPHVLAVDDSIVD---RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY--CMPG-MTG 93 (153)
Q Consensus 20 ~~~iLiidd~~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~--~~~~-~~g 93 (153)
..++.+++.|... ...+..+.+..+..+....+..++...+. ...+|+||+|. .++. .+.
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~--------------~~~~D~VLIDTaGr~~rd~~~ 317 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA--------------RDGSELILIDTAGYSHRNLEQ 317 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH--------------hCCCCEEEEeCCCCCccCHHH
Confidence 3567777777622 22333333444554444444444443331 24689999996 1211 122
Q ss_pred HHHHHHHHhc-cC-CCCCcEEEEeCCCChhhHHHHHH
Q 042079 94 YELLKKIKES-SV-MKEVPVVVVSSENIPTRINECLE 128 (153)
Q Consensus 94 ~~~~~~lr~~-~~-~~~~pii~~t~~~~~~~~~~a~~ 128 (153)
++-++.+... .. .+.-.++++++........++.+
T Consensus 318 l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 318 LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred HHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 2222222221 11 12234566666665555555443
No 314
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=54.04 E-value=89 Score=23.22 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=40.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|+.++=......-+..+++.+.. .+|+|. +... ...+....+..+++.+|-+.+++.+.+.+++
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a~-----G~Pvi~-~~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~ 327 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALAA-----GVPVIA-SDIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLI 327 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHHC-----CCCEEE-CCCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHH
Confidence 466665322223345666776653 467764 3222 2345566777889999999999988777654
No 315
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=53.58 E-value=98 Score=23.57 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.|+.++=.. .+.-|..+++.+.. .+|+|.... . ...+....|..+|+..|-+.+++.+.+.++
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma~-----g~PvI~s~~-~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l 333 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMAC-----GVPVVASNA-G---GIPEVVKHGETGFLVDVGDVEAMAEYALSL 333 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHHc-----CCCEEEeCC-C---CchhhhcCCCceEEcCCCCHHHHHHHHHHH
Confidence 466654322 23345666666552 568775322 2 234566778888999998988888766654
No 316
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=53.50 E-value=35 Score=21.09 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEE-eCCCCCCC---HH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVIT-DYCMPGMT---GY 94 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~-D~~~~~~~---g~ 94 (153)
..++..+|-++......++..+..+..+. ...+..+ +... ..++|+|++ ...+.-.+ -.
T Consensus 24 ~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~---------------~~~~D~v~~~~~~~~~~~~~~~~ 87 (101)
T PF13649_consen 24 SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD-LPFS---------------DGKFDLVVCSGLSLHHLSPEELE 87 (101)
T ss_dssp -SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHH---------------SSSEEEEEE-TTGGGGSSHHHHH
T ss_pred cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH-Cccc---------------CCCeeEEEEcCCccCCCCHHHHH
Confidence 47899999999998888888765543332 3334333 3322 347999999 44233333 34
Q ss_pred HHHHHHH
Q 042079 95 ELLKKIK 101 (153)
Q Consensus 95 ~~~~~lr 101 (153)
.+++++.
T Consensus 88 ~ll~~~~ 94 (101)
T PF13649_consen 88 ALLRRIA 94 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 317
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.41 E-value=89 Score=23.03 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=46.1
Q ss_pred EEEEeCC-C-CCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC--CCChhHHHHHHhh
Q 042079 81 LVITDYC-M-PGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK--PLKPSDVKKLTGH 150 (153)
Q Consensus 81 lii~D~~-~-~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K--P~~~~~l~~~~~~ 150 (153)
++++|.. . .+. .-+++++++.+. ..+|+.+=.+-.+.+.+.+++..|++..+.- -++++.+.++..+
T Consensus 46 l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~ 117 (228)
T PRK04128 46 IHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSE 117 (228)
T ss_pred EEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHH
Confidence 6777875 2 222 457888888764 3678887666778888999999999876542 3456666666543
No 318
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=53.40 E-value=1.2e+02 Score=24.53 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=34.0
Q ss_pred cccEEEEeC-CCC---CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHH-h-cCcccccCCCChhHHHHHHh
Q 042079 78 KVNLVITDY-CMP---GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLE-E-GAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 78 ~~dlii~D~-~~~---~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~-~-ga~~~l~KP~~~~~l~~~~~ 149 (153)
..|++++.. ... .....+.++++++. ..+|| +++......-.++.+ . ++| ++.-+-...++.+.+.
T Consensus 36 ~aD~viinTC~v~~~a~~~~~~~i~~~~~~----~~~vv-vgGc~a~~~pee~~~~~~~vd-~v~g~~~~~~l~~~~~ 107 (430)
T TIGR01125 36 DADYVIVNTCGFIEDARQESIDTIGELADA----GKKVI-VTGCLVQRYKEELKEEIPEVH-AITGSGDVENILNAIE 107 (430)
T ss_pred cCCEEEEeCCCccchHHHHHHHHHHHHHhc----CCCEE-EECCccccchHHHHhhCCCCc-EEECCCCHHHHHHHHH
Confidence 368999884 222 22356666666653 34544 555433333344443 3 344 4556666666655443
No 319
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=53.20 E-value=1e+02 Score=23.62 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=50.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~ 98 (153)
.-+++++|.......+..+--.....-..-.+..+....+... . ..++-=.++.|..||.. .|..+++
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~--l--------~~g~~valvSDAG~P~ISDPG~~LV~ 95 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAK--L--------EIGNNIAVSSDAGPPLISDPGHLLVA 95 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHH--H--------HcCCcEEEEecCCCCCcCCccHHHHH
Confidence 4578888888777666554322222233333443333333111 0 12233466779999975 5999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHH
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLE 128 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~ 128 (153)
..++. .++++.+.+ +.....|+.
T Consensus 96 ~~~~~----~i~v~~ipG---~sA~~~Al~ 118 (276)
T TIGR00096 96 CREKA----NIIVVPLPG---AAALTAALC 118 (276)
T ss_pred HHHHC----CCeEEcCCh---HHHHHHHHH
Confidence 98874 456665543 344444544
No 320
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.07 E-value=60 Score=24.89 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=44.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 82 VITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 82 ii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+|.|-+.--..-.+.++.+|... +..+|.+=+ .+.+...++.+.|+|..+.--++++++++....+
T Consensus 158 LikdnHi~~~~i~~av~~~r~~~--~~~kIeVEv--~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l 223 (278)
T PRK08385 158 LIKDNHLALVPLEEAIRRAKEFS--VYKVVEVEV--ESLEDALKAAKAGADIIMLDNMTPEEIREVIEAL 223 (278)
T ss_pred EEccCHHHHHHHHHHHHHHHHhC--CCCcEEEEe--CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHH
Confidence 34454433222334556666543 455654444 4788889999999999888888999999877654
No 321
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=53.07 E-value=58 Score=24.78 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++.+|+.. +.. .|.+.. .+.+...+|.+.|+|-...-|+.+..+++....
T Consensus 171 ~~av~~~R~~~--~~~-~IgVev-~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~ 223 (272)
T cd01573 171 LKALARLRATA--PEK-KIVVEV-DSLEEALAAAEAGADILQLDKFSPEELAELVPK 223 (272)
T ss_pred HHHHHHHHHhC--CCC-eEEEEc-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 56677777643 344 344444 456777888999999888889999998876653
No 322
>PRK10742 putative methyltransferase; Provisional
Probab=52.92 E-value=98 Score=23.39 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=56.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc------Cc----EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS------AC----KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~------~~----~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
-++..+|.++.....++.-|+.. +. .+. ...+..+.+... ...||+|++|-..|
T Consensus 111 ~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---------------~~~fDVVYlDPMfp 175 (250)
T PRK10742 111 CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---------------TPRPQVVYLDPMFP 175 (250)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---------------CCCCcEEEECCCCC
Confidence 46999999999999998888763 11 122 233433333322 23699999998887
Q ss_pred CCC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC-CC
Q 042079 90 GMT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK-PL 139 (153)
Q Consensus 90 ~~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K-P~ 139 (153)
... .-...+.+|-.. -++-......+....|++..-.-.+.| |.
T Consensus 176 ~~~ksa~vkk~mr~~~------~l~g~d~d~~~lL~~Al~~A~kRVVVKrp~ 221 (250)
T PRK10742 176 HKQKSALVKKEMRVFQ------SLVGPDLDADGLLEPARLLATKRVVVKRPD 221 (250)
T ss_pred CCccccchhhhHHHHH------HhcCCCCChHHHHHHHHHhcCceEEEecCC
Confidence 643 112223333210 012233456777777887766555555 53
No 323
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=52.89 E-value=61 Score=24.27 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=36.9
Q ss_pred cEEEEeCCCCC---CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHH-HhcCccc
Q 042079 80 NLVITDYCMPG---MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECL-EEGAQMF 134 (153)
Q Consensus 80 dlii~D~~~~~---~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~-~~ga~~~ 134 (153)
.+++.|+.-.+ .--+++++++++. .++|+|.-.+-.+.++..+++ ..|+++.
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgV 223 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAA 223 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEE
Confidence 36666664322 1236778888764 478999888788889999988 7888764
No 324
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=52.89 E-value=53 Score=24.13 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=38.9
Q ss_pred ccEEEEeCCCCCC-C--HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 79 VNLVITDYCMPGM-T--GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 79 ~dlii~D~~~~~~-~--g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
-.+|+.|+.--++ . .+++++.+++.. ++|+|+-.+-.+.++..++.+.|+++.+.
T Consensus 162 ~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 162 GEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3588889865532 3 356777777643 78998777777889999999999987654
No 325
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.73 E-value=35 Score=29.63 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=43.2
Q ss_pred CCcccEEEEeC-CCCCCCHHH-HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 76 GTKVNLVITDY-CMPGMTGYE-LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 76 ~~~~dlii~D~-~~~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..++.++|+|- ++-..+.+. +++.|.+ . ..++.+|++|. +...+...+..-+.-|-.++++.+++.+.+.+
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEE-P-P~~v~FILaTt--ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEE-P-PEHVKFILATT--DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhcc-C-CCCceEEEEeC--ChHhhhhHHHHHHHhcccCCCChHHHHHHHHH
Confidence 45678999984 333333333 3343333 2 13566666664 34445556667778888899999988876654
No 326
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=52.50 E-value=41 Score=26.28 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=27.1
Q ss_pred CcccEEEEeCCC-----CCC-CHHHHHHHHHhccCCCCCcEEEEeC
Q 042079 77 TKVNLVITDYCM-----PGM-TGYELLKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 77 ~~~dlii~D~~~-----~~~-~g~~~~~~lr~~~~~~~~pii~~t~ 116 (153)
+.|++++||--+ |.. .-+.++++|+++. ++||+.+|-
T Consensus 145 t~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~---~IPIlYVSH 187 (352)
T COG4148 145 TAPELLLMDEPLASLDLPRKREILPYLERLRDEI---NIPILYVSH 187 (352)
T ss_pred cCCCeeeecCchhhcccchhhHHHHHHHHHHHhc---CCCEEEEec
Confidence 579999999533 433 3577888888754 799997774
No 327
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=52.36 E-value=1.1e+02 Score=23.58 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=56.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~ 97 (153)
...+++++|....+..+..+=-.....-....+..+....+...- ....-=.++.|..||.. .|+.++
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l----------~~g~~valVSDAG~P~ISDPG~~LV 99 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLL----------KKGKSVALVSDAGTPLISDPGYELV 99 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHH----------hcCCeEEEEecCCCCcccCccHHHH
Confidence 356899999988876665442222222223345555444432111 12223456789999975 599999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGA 131 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga 131 (153)
+..++. .++|+.+.+.. .........|.
T Consensus 100 ~~a~~~----gi~V~~lPG~s--A~~tAL~~SGl 127 (275)
T COG0313 100 RAAREA----GIRVVPLPGPS--ALITALSASGL 127 (275)
T ss_pred HHHHHc----CCcEEecCCcc--HHHHHHHHcCC
Confidence 999874 57888887653 33334445553
No 328
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=52.34 E-value=96 Score=25.67 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=36.8
Q ss_pred CcccEEEEeCCCCCC-------CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCc
Q 042079 77 TKVNLVITDYCMPGM-------TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQ 132 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-------~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~ 132 (153)
..+|.|.+.--.|.. -|++.++++.+. ..+|++++.+- +.+...+++..|++
T Consensus 409 ~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 409 DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEA---SKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc---CCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 468998765433321 278888888653 47899988664 57777889999887
No 329
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=52.20 E-value=86 Score=23.22 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=37.5
Q ss_pred cccEEEEeCCCCCCCHHHHH----HHH---HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 78 KVNLVITDYCMPGMTGYELL----KKI---KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~----~~l---r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
..|+|++=...|+..|..|+ +++ |+......-..|-+-+.-+.+.+..+..+||+-|+.-
T Consensus 131 ~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 131 DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred hCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 47888766667777776655 333 3322111133555555667888888899999877543
No 330
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=51.99 E-value=58 Score=25.92 Aligned_cols=71 Identities=25% Similarity=0.335 Sum_probs=42.9
Q ss_pred CCcccEEEEeC--CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 76 GTKVNLVITDY--CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 76 ~~~~dlii~D~--~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
...+.++|+|- .|.....-.+++.+.+ .. ..+.+|++|.. .+.........+.-+-.+|++.+++.+.+.+
T Consensus 139 ~~~~kVviIDead~m~~~aanaLLK~LEe-pp-~~~~~IL~t~~--~~~llpti~SRc~~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANAANALLKVLEE-PP-ARSLFLLVSHA--PARLLPTIRSRCRKLRLRPLAPEDVIDALAA 211 (365)
T ss_pred cCCCEEEEEechHhcCHHHHHHHHHHHhc-CC-CCeEEEEEECC--chhchHHhhccceEEECCCCCHHHHHHHHHH
Confidence 35678999874 2222233345566654 21 23334444433 2334556677788888899999999887765
No 331
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=51.99 E-value=35 Score=27.53 Aligned_cols=68 Identities=15% Similarity=0.333 Sum_probs=43.8
Q ss_pred ccEEEEe-CCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhH------------HHHHHhcCcccccCCCChhHHH
Q 042079 79 VNLVITD-YCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRI------------NECLEEGAQMFMLKPLKPSDVK 145 (153)
Q Consensus 79 ~dlii~D-~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~------------~~a~~~ga~~~l~KP~~~~~l~ 145 (153)
|-++|+| ++|-+...|.|+.+--+.. -.|||+++++.....+ .+.++ -..-.=++|++.++++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse---~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD-RllII~t~py~~~Eir 367 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESE---LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD-RLLIISTRPYSREEIR 367 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcc---cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh-heeEEecCCCCHHHHH
Confidence 6677886 7999999999998765533 3588888765432211 11111 1122346799999999
Q ss_pred HHHhh
Q 042079 146 KLTGH 150 (153)
Q Consensus 146 ~~~~~ 150 (153)
+.+..
T Consensus 368 eIi~i 372 (450)
T COG1224 368 EIIRI 372 (450)
T ss_pred HHHHH
Confidence 88764
No 332
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.79 E-value=41 Score=23.15 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=25.7
Q ss_pred CcccEEEEeCCCCCCCHH--------HHHHHHHhccCCCCCcEEEEeCC
Q 042079 77 TKVNLVITDYCMPGMTGY--------ELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~--------~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
.+||+|++.+...+.... .+++.+++.. +..||++++..
T Consensus 56 ~~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~--p~~~iil~~~~ 102 (177)
T cd01844 56 VPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETH--PDTPILLVSPR 102 (177)
T ss_pred cCCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHC--cCCCEEEEecC
Confidence 468999997776655322 3455666543 56788888754
No 333
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=51.65 E-value=81 Score=23.12 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=31.5
Q ss_pred cccEEEEeCC-------CCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhH--HHHHHhcCc
Q 042079 78 KVNLVITDYC-------MPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRI--NECLEEGAQ 132 (153)
Q Consensus 78 ~~dlii~D~~-------~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~--~~a~~~ga~ 132 (153)
.++.+++|+. -+-....+++++|++. ..++.++|+....... ....+.|..
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~----G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQ----GKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHC----CCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 4788888872 1223567888888863 5688888885433221 234456654
No 334
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=51.52 E-value=91 Score=22.61 Aligned_cols=94 Identities=7% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEE-EEe
Q 042079 38 NLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVV-VVS 115 (153)
Q Consensus 38 ~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii-~~t 115 (153)
+.|.+.+. -+....+.+++++...... ...+. ++.+.+.+.++.+.++.+++.. + .+++ -..
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~-----------~gGi~--~iEvt~~~~~~~~~i~~l~~~~--~-~~~~iGaG 68 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALI-----------EAGFR--AIEIPLNSPDPFDSIAALVKAL--G-DRALIGAG 68 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHH-----------HCCCC--EEEEeCCCccHHHHHHHHHHHc--C-CCcEEeEE
Confidence 44454443 3444555666655543211 12233 5555566667888888887643 1 2322 222
Q ss_pred CCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 116 SENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 116 ~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
.-.+.+....+.+.|++ |+.-|-...++.+..
T Consensus 69 TV~~~~~~~~a~~aGA~-fivsp~~~~~v~~~~ 100 (206)
T PRK09140 69 TVLSPEQVDRLADAGGR-LIVTPNTDPEVIRRA 100 (206)
T ss_pred ecCCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 23456777888889885 666676666655443
No 335
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.37 E-value=94 Score=22.72 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CCCHHHHHHHHHhccCCCCCcEEEEe
Q 042079 38 NLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GMTGYELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 38 ~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~~g~~~~~~lr~~~~~~~~pii~~t 115 (153)
....+.+.-+. -+.+..|+.... ...+|++=+ .| +.-|.+.++.++.. .+++|++. +
T Consensus 103 ~~~~~~~i~~iPG~~T~~E~~~A~---------------~~Gad~vkl---FPa~~~G~~~ik~l~~~--~p~ip~~a-t 161 (213)
T PRK06552 103 KICNLYQIPYLPGCMTVTEIVTAL---------------EAGSEIVKL---FPGSTLGPSFIKAIKGP--LPQVNVMV-T 161 (213)
T ss_pred HHHHHcCCCEECCcCCHHHHHHHH---------------HcCCCEEEE---CCcccCCHHHHHHHhhh--CCCCEEEE-E
Confidence 33444454333 567778877765 245788876 33 34578999999863 46789874 4
Q ss_pred CCCChhhHHHHHHhcCccc
Q 042079 116 SENIPTRINECLEEGAQMF 134 (153)
Q Consensus 116 ~~~~~~~~~~a~~~ga~~~ 134 (153)
+.-+.+.+.+.+..|++.+
T Consensus 162 GGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 162 GGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred CCCCHHHHHHHHHCCCcEE
Confidence 4457888999999997653
No 336
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=51.30 E-value=63 Score=20.72 Aligned_cols=26 Identities=4% Similarity=-0.156 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEecCHH
Q 042079 29 SIVDRKIVENLLKNSACKVTTAENGM 54 (153)
Q Consensus 29 ~~~~~~~l~~~l~~~~~~v~~~~~~~ 54 (153)
+......+...+...||.+.....-.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~AT~gTa 35 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLFATGGTS 35 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEEECcHHH
Confidence 43334444455556788776544333
No 337
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.27 E-value=99 Score=23.47 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=42.6
Q ss_pred CcccEEEEeCCCC---CCC----HHHHHHHHHhccCCCCCcEEEEeCCC-C-----hhhHHHHHHhcCccc-ccCC----
Q 042079 77 TKVNLVITDYCMP---GMT----GYELLKKIKESSVMKEVPVVVVSSEN-I-----PTRINECLEEGAQMF-MLKP---- 138 (153)
Q Consensus 77 ~~~dlii~D~~~~---~~~----g~~~~~~lr~~~~~~~~pii~~t~~~-~-----~~~~~~a~~~ga~~~-l~KP---- 138 (153)
+..+++++...-+ .-. -+..+..+++. ...||++-+++. . ......|...||++. +-|-
T Consensus 161 Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~---~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd 237 (266)
T PRK13398 161 GNENVVLCERGIRTFETYTRNTLDLAAVAVIKEL---SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPE 237 (266)
T ss_pred CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhc---cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCcc
Confidence 4568888887432 222 23344455543 367877644443 3 556677889999843 3332
Q ss_pred ---------CChhHHHHHHhhh
Q 042079 139 ---------LKPSDVKKLTGHL 151 (153)
Q Consensus 139 ---------~~~~~l~~~~~~~ 151 (153)
++++++++++..+
T Consensus 238 ~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 238 KALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred ccCCchhhcCCHHHHHHHHHHH
Confidence 6677777776654
No 338
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=50.60 E-value=23 Score=27.40 Aligned_cols=58 Identities=19% Similarity=0.109 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
+..+|+-+|-++......+..+.. .-.+. ...+..+....+.. +...+|.|++|+...
T Consensus 43 ~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~------------~~~~vDgIl~DLGvS 101 (296)
T PRK00050 43 PKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAE------------GLGKVDGILLDLGVS 101 (296)
T ss_pred CCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHc------------CCCccCEEEECCCcc
Confidence 356799999999999888877765 22233 33444443333310 112699999987553
No 339
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=50.40 E-value=71 Score=22.70 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...++++.|++. .+++.++|+..........-..|...|+
T Consensus 86 g~~~~l~~L~~~----g~~~~i~S~~~~~~~~~~l~~~gl~~~f 125 (214)
T PRK13288 86 TVYETLKTLKKQ----GYKLGIVTTKMRDTVEMGLKLTGLDEFF 125 (214)
T ss_pred CHHHHHHHHHHC----CCeEEEEeCCCHHHHHHHHHHcCChhce
Confidence 457888999874 4678888886544444334456776654
No 340
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=50.29 E-value=39 Score=24.08 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCcEEEE--ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC----CCCHHHHHHHHHhccCCC
Q 042079 34 KIVENLLKNSACKVTT--AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP----GMTGYELLKKIKESSVMK 107 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~----~~~g~~~~~~lr~~~~~~ 107 (153)
..+.. ++..|+.+.. +..+...+..+. .-+||.|-+|..+. +.....+++.+.......
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~--------------~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~ 202 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLA--------------SLPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSL 202 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHH--------------HHCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhh--------------hcccccceeecccccccchhhHHHHHHHHHHHhhcc
Confidence 34443 6678887654 333333334332 13589999997554 223444555443221112
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCc
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQ 132 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~ 132 (153)
.+.+ ++.+-.+.+....+.+.|++
T Consensus 203 ~~~v-ia~gVe~~~~~~~l~~~G~~ 226 (236)
T PF00563_consen 203 GIKV-IAEGVESEEQLELLKELGVD 226 (236)
T ss_dssp T-EE-EEECE-SHHHHHHHHHTTES
T ss_pred cccc-ceeecCCHHHHHHHHHcCCC
Confidence 3444 46666778888888999986
No 341
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.24 E-value=59 Score=27.92 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=40.4
Q ss_pred CCcccEEEEe-CCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 76 GTKVNLVITD-YCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 76 ~~~~dlii~D-~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..++.++|+| +++-....+..+.+.-+.. ...+.+|+.|. +...+...+..-+.-|-.+|++.+++...+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-P~~~~fIL~Tt--d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-PEYLKFVLATT--DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred cCCceEEEEEChhhCCHHHHHHHHHhcccC-CCCeEEEEEEC--CchhhhHHHHHhceeeecCCCCHHHHHHHHHH
Confidence 4568899997 3443333333322221222 12345555553 23334444666677788899999998876654
No 342
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=50.11 E-value=88 Score=23.53 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=34.3
Q ss_pred ccEEEEeCC-------CCCCCHHHHHHHHHhccCCCCCcEEEEeCCCCh---hhHHHHHHhcCcccccCCCChh
Q 042079 79 VNLVITDYC-------MPGMTGYELLKKIKESSVMKEVPVVVVSSENIP---TRINECLEEGAQMFMLKPLKPS 142 (153)
Q Consensus 79 ~dlii~D~~-------~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~---~~~~~a~~~ga~~~l~KP~~~~ 142 (153)
++++++|+. -+-....++++.|++. .++++++|+.... +........|...--.++++..
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~----g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~ 71 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARA----GKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA 71 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHC----CCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH
Confidence 467777763 1122367888888863 5689989885432 2233455666543333444443
No 343
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=50.10 E-value=65 Score=25.49 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCcccEEEEeC--CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 76 GTKVNLVITDY--CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 76 ~~~~dlii~D~--~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
...+.++|+|- .|.....-.+++.+.+ .. ..+.+|+++.. +......+...+..|-.+|++.+++...+.+
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEE-pp-~~~~fiLit~~--~~~llptIrSRc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEE-PP-ARALFILISHS--SGRLLPTIRSRCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhc-CC-CCceEEEEECC--hhhccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 34577888874 3333233445566654 22 34556666643 3334455667777888899999999887765
No 344
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=50.09 E-value=51 Score=19.24 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
++-.+.++-|++.....+..+.++.|+++....
T Consensus 25 ~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 25 PGEILEVISDCPQSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred CCCEEEEEecCchHHHHHHHHHHHcCCEEEEEE
Confidence 455678888899999999999999999887554
No 345
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=49.74 E-value=31 Score=19.45 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHhc--cCCCCCcEEEEeCC
Q 042079 90 GMTGYELLKKIKES--SVMKEVPVVVVSSE 117 (153)
Q Consensus 90 ~~~g~~~~~~lr~~--~~~~~~pii~~t~~ 117 (153)
..+|.+++++|.+. ......|||+-+.-
T Consensus 3 ~~sGv~vlRel~r~~~~~~~~~PVVFTS~L 32 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAAVMPVVFTSML 32 (58)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCEEEeCCC
Confidence 35799999999765 22234688865543
No 346
>PLN02645 phosphoglycolate phosphatase
Probab=49.74 E-value=71 Score=24.57 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=31.7
Q ss_pred cccEEEEeC-------CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCC---hhhHHHHHHhcC
Q 042079 78 KVNLVITDY-------CMPGMTGYELLKKIKESSVMKEVPVVVVSSENI---PTRINECLEEGA 131 (153)
Q Consensus 78 ~~dlii~D~-------~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~---~~~~~~a~~~ga 131 (153)
.++++++|+ .-+-....+++++|++. ..+++++|+... .....+..+.|.
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~----g~~~~~~TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSM----GKKLVFVTNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHC----CCEEEEEeCCCCCCHHHHHHHHHHCCC
Confidence 477888875 12223467888998874 468999998653 233344455665
No 347
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.71 E-value=40 Score=25.93 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=47.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
...+++|+........=+..+|.+.+..|+.+++...-+... ....|+++.-..-|..-.-+
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~---------------~~~ADIvV~AvGkp~~i~~~ 217 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAH---------------TKKADIVIVGVGKPNLITED 217 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHH---------------HhhCCEEEEecCcccccCHH
Confidence 457999999999999999999998888888887655433322 13579999998887765443
No 348
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=49.68 E-value=1.4e+02 Score=24.20 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=58.6
Q ss_pred CCCeEEEEeC-CHHHHHHHHHHHHhcCcEEEEecCHH--HHHHHhchhhhHHhhhhcccCCCcccEEEEeC-CCCCCCHH
Q 042079 19 KPPHVLAVDD-SIVDRKIVENLLKNSACKVTTAENGM--RALEFLGLVDEQEQQNNLNSNGTKVNLVITDY-CMPGMTGY 94 (153)
Q Consensus 19 ~~~~iLiidd-~~~~~~~l~~~l~~~~~~v~~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~-~~~~~~g~ 94 (153)
+.-+|++.++ -.-.+.....++.+.|+++..+.+.. +....+. ..+.++|+++. ..|.+.-.
T Consensus 101 ~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~--------------~~~tk~v~lEtPsNP~l~v~ 166 (396)
T COG0626 101 AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIK--------------EPNTKLVFLETPSNPLLEVP 166 (396)
T ss_pred CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhc--------------ccCceEEEEeCCCCcccccc
Confidence 3567777777 55667788888888999988776433 3444441 13578999985 34444332
Q ss_pred HH--HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 95 EL--LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 95 ~~--~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++ +.++-+. .. .++++=+.=.....++.++.|||-.+.
T Consensus 167 DI~~i~~~A~~---~g-~~vvVDNTfatP~~q~PL~~GaDIVvh 206 (396)
T COG0626 167 DIPAIARLAKA---YG-ALVVVDNTFATPVLQRPLELGADIVVH 206 (396)
T ss_pred cHHHHHHHHHh---cC-CEEEEECCcccccccChhhcCCCEEEE
Confidence 22 2222221 12 344443333444567788899886643
No 349
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=49.63 E-value=99 Score=22.46 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=25.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
++||++|........+...+++.|+.+......
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRND 33 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECC
Confidence 478999998887778888888888877655543
No 350
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.56 E-value=1.4e+02 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhcCcEE
Q 042079 28 DSIVDRKIVENLLKNSACKV 47 (153)
Q Consensus 28 d~~~~~~~l~~~l~~~~~~v 47 (153)
-|....+.+...|...||.+
T Consensus 18 ~N~~dse~~~~~l~~~G~~~ 37 (445)
T PRK14340 18 MNQADSEIITALLQDEGYVP 37 (445)
T ss_pred CcHHHHHHHHHHHHHCcCEE
Confidence 45556667777777777755
No 351
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.54 E-value=74 Score=23.28 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=38.5
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccCCCChhHHHH
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLKPLKPSDVKK 146 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~KP~~~~~l~~ 146 (153)
..+++++++++.. ++|+++..+-.+.+.+.+++..|++.+ +..|+.+.++..
T Consensus 180 ~~~~~i~~i~~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 180 VNTEPVKELVDSV---DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHH
Confidence 3577888887643 689998887777888888899998764 456777666544
No 352
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.24 E-value=79 Score=24.37 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=38.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++.+|+.. +....|-+.. .+.++..+|.+.|+|-...-+++++++++.+..
T Consensus 183 ~~av~~~r~~~--~~~~~I~VEv-~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~ 236 (288)
T PRK07428 183 GEAITRIRQRI--PYPLTIEVET-ETLEQVQEALEYGADIIMLDNMPVDLMQQAVQL 236 (288)
T ss_pred HHHHHHHHHhC--CCCCEEEEEC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 45566666643 2222343443 467778899999999998999999999987764
No 353
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=49.12 E-value=73 Score=22.54 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=43.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CcEEEEec------CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS--ACKVTTAE------NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~--~~~v~~~~------~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
..++.++...+.....+.+.|++. +..+.... +..+.++.+ +...+|++++.+.+|..
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I--------------~~s~~dil~VglG~PkQ 113 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKI--------------ARSGAGIVFVGLGCPKQ 113 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHH--------------HHcCCCEEEEEcCCcHh
Confidence 368999999999988888888764 34433221 112223333 24679999999999986
Q ss_pred CHHHHHHHHHh
Q 042079 92 TGYELLKKIKE 102 (153)
Q Consensus 92 ~g~~~~~~lr~ 102 (153)
.- ++.+.+.
T Consensus 114 E~--~~~~~~~ 122 (177)
T TIGR00696 114 EI--WMRNHRH 122 (177)
T ss_pred HH--HHHHhHH
Confidence 53 3455544
No 354
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=48.95 E-value=88 Score=22.59 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCcccEEEEeCCC-----CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH
Q 042079 76 GTKVNLVITDYCM-----PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE 125 (153)
Q Consensus 76 ~~~~dlii~D~~~-----~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 125 (153)
+..+|++|+|--. .=.+--++++.|+.++ +.+ =+++|+...+....+
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp--~~~-evVlTGR~~p~~Lie 164 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARP--GMQ-HVVITGRGAPRELIE 164 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC--CCC-EEEEECCCCCHHHHH
Confidence 5679999999432 2345667888887643 334 455888776665544
No 355
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.92 E-value=99 Score=23.43 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=38.0
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..++.+|+... +.. .|.+.. .+.+...++...|+|-...-|+.++.++++...+
T Consensus 169 ~~v~~~r~~~~-~~~-~I~vev-~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 169 EAVKRARAAAP-FEK-KIEVEV-ETLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHHHhCC-CCC-eEEEec-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34567776431 133 344544 4667788899999998889999999999876543
No 356
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.91 E-value=1e+02 Score=23.75 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=41.3
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+.++++|+... ...+|.+-.. +.+...++.+.|+|-.+.--++++++++.+..+
T Consensus 181 ~~ai~~~r~~~~-~~~kIeVEv~--tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 181 REAIRRARAGVG-HLVKIEVEVD--TLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHHHHHhCC-CCCcEEEEeC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 456677776542 2456666554 677888999999999999999999999887643
No 357
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.55 E-value=90 Score=23.68 Aligned_cols=54 Identities=22% Similarity=0.422 Sum_probs=37.9
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..++.+|+.. +.-..|-++.. +.+...++.+.|+|-+..-|+++++++++...+
T Consensus 170 ~~v~~~r~~~--~~~~~Igvev~-s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 170 EAVRRARAAA--PFTLKIEVEVE-TLEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred HHHHHHHHhC--CCCCeEEEEEC-CHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 3456667643 22234545554 567788899999988889999999999877643
No 358
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=48.45 E-value=98 Score=23.04 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-Ccccc------cCCCChhHHHHHHh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQMFM------LKPLKPSDVKKLTG 149 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~~~l------~KP~~~~~l~~~~~ 149 (153)
+++++++++. .++|+|+..+-.+.+.+.+++..| ++..+ ..-++..++.+.+.
T Consensus 188 ~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 188 LELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 6788888874 368999888888999999999888 87732 24566666665544
No 359
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.31 E-value=50 Score=29.82 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=45.1
Q ss_pred CcccEEEEe-CCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITD-YCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D-~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++.++|+| +++-....++.+.+.-+... ..+.+|+.|. +...+...+...+.-|-.+|++.+++...+.+.
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFILaTT--e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~i 190 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFLLATT--DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHI 190 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEEEECC--CchhchHHHHHhheEEeCCCCCHHHHHHHHHHH
Confidence 467899998 55545445554433333221 3455555543 334455566667788999999999999877763
No 360
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.28 E-value=93 Score=24.12 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=46.2
Q ss_pred ccEEEE-eCCCCCCC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 79 VNLVIT-DYCMPGMT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 79 ~dlii~-D~~~~~~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.|.|++ |-+..-.. --++++++|+.. +..+|.+ .-.+.+...+|.+.|+|-.+.--++++++++.+..
T Consensus 176 sD~vLIkdNHi~~~G~i~~av~~~r~~~--~~~kIeV--Evetleea~eA~~aGaDiImLDnmspe~l~~av~~ 245 (294)
T PRK06978 176 YDGILIKENHIAAAGGVGAALDAAFALN--AGVPVQI--EVETLAQLETALAHGAQSVLLDNFTLDMMREAVRV 245 (294)
T ss_pred CceEEEeHHHHHHhCCHHHHHHHHHHhC--CCCcEEE--EcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 455554 44433222 245677777643 2345433 33568888999999999999999999999987764
No 361
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=48.14 E-value=81 Score=22.79 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=28.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc--EEEEecCHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSAC--KVTTAENGMR 55 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~~~~~~ 55 (153)
++|.|||-.--....+.+.|++.|+ .+....+..+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~ 38 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA 38 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH
Confidence 5789999888778888999999988 7777776654
No 362
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.11 E-value=86 Score=26.75 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=41.8
Q ss_pred CcccEEEEe-CCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 77 TKVNLVITD-YCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D-~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..+.++|+| .++-...++..+-+.-+... ..+.+|++|. ....+...+..-+.-|-.+|++.+++.+.+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-~~~~fIL~tt--e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~ 188 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPP-EHLIFIFATT--EPEKVLPTIRSRTHHYPFRLLPPRTMRALIAR 188 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCC-CCeEEEEEeC--ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHH
Confidence 457788887 44544455544433223221 3455555553 33444555565567787889999988876655
No 363
>PRK04457 spermidine synthase; Provisional
Probab=48.05 E-value=1.2e+02 Score=22.84 Aligned_cols=70 Identities=7% Similarity=0.077 Sum_probs=45.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcC--cEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-----
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSA--CKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG----- 90 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~--~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~----- 90 (153)
+..++..+|-++......+..+...+ -.+. ...++.+.+... ..+||+|++|..-+.
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---------------~~~yD~I~~D~~~~~~~~~~ 153 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---------------RHSTDVILVDGFDGEGIIDA 153 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---------------CCCCCEEEEeCCCCCCCccc
Confidence 45789999999999988888765322 2232 345655554432 347999999963322
Q ss_pred CCHHHHHHHHHhc
Q 042079 91 MTGYELLKKIKES 103 (153)
Q Consensus 91 ~~g~~~~~~lr~~ 103 (153)
....++++.+++.
T Consensus 154 l~t~efl~~~~~~ 166 (262)
T PRK04457 154 LCTQPFFDDCRNA 166 (262)
T ss_pred cCcHHHHHHHHHh
Confidence 1235788877764
No 364
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.81 E-value=71 Score=24.41 Aligned_cols=53 Identities=9% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCC-CCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMK-EVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~-~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.++++++|... + ..+|. +.-.+.++..+|.+.|+|-...--++++++++.+..
T Consensus 169 ~~~v~~~k~~~--p~~~~I~--VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~ 222 (273)
T PRK05848 169 KEFIQHARKNI--PFTAKIE--IECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAY 222 (273)
T ss_pred HHHHHHHHHhC--CCCceEE--EEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 56677777643 3 23443 344578888999999999988888899999988764
No 365
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=47.60 E-value=1e+02 Score=22.15 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=35.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
.++++||.|......+++-++..++ .+. ...+...++..+. ...+||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~-------------~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG-------------TREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC-------------CCCcccEEEeCC
Confidence 5689999999999888888877662 233 3333334555442 223599999994
No 366
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=47.56 E-value=80 Score=25.03 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=45.3
Q ss_pred cccEEEEeCCCCCCCHH-HHHHHHHhccCCCCCcEEEEeCCC-ChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 78 KVNLVITDYCMPGMTGY-ELLKKIKESSVMKEVPVVVVSSEN-IPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~-~~~~~lr~~~~~~~~pii~~t~~~-~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..+.++++...+..--+ .++..+ . ....++...... ......+.++.|+++.+.+|-++.+++++...+
T Consensus 88 ~~~~viv~~~dW~iIPlEnlIA~~-~----~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 88 EVDYVIVEGRDWTIIPLENLIADL-G----QSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred cCCEEEEECCCCcEecHHHHHhhh-c----CCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 34777777766554333 344555 2 234565555432 344456678999999999999999999877643
No 367
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=47.52 E-value=98 Score=21.93 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=32.1
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc-----------cCCCChhHHHHHHhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM-----------LKPLKPSDVKKLTGH 150 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l-----------~KP~~~~~l~~~~~~ 150 (153)
...++++.|++. ..++.++|+.............|...|+ .|| +++-+..++.+
T Consensus 98 g~~~~L~~L~~~----g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP-~~~~~~~~~~~ 162 (221)
T TIGR02253 98 GVRDTLMELRES----GYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKP-HPKIFYAALKR 162 (221)
T ss_pred CHHHHHHHHHHC----CCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCC-CHHHHHHHHHH
Confidence 457889999864 4678888876544433344455554442 366 44545555544
No 368
>PRK11018 hypothetical protein; Provisional
Probab=47.44 E-value=62 Score=19.47 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
++..+.|+-|++.....+..+.++.|+++....
T Consensus 34 ~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~~ 66 (78)
T PRK11018 34 KGEILEVVSDCPQSINNIPLDARNHGYTVLDIQ 66 (78)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEE
Confidence 345677888888888899999999999887544
No 369
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.33 E-value=26 Score=23.47 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=23.0
Q ss_pred CCcccEEEEeCCCCCCCH-----------HHHHHHHHhccCCCCCcEEEEeC
Q 042079 76 GTKVNLVITDYCMPGMTG-----------YELLKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g-----------~~~~~~lr~~~~~~~~pii~~t~ 116 (153)
..+||+|++-+...+... -.+++.+++.. +.+++++++.
T Consensus 38 ~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~--p~~~ii~~~~ 87 (157)
T cd01833 38 AAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAAN--PDVKIIVATL 87 (157)
T ss_pred cCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhC--CCeEEEEEeC
Confidence 457899999655444311 23556666543 5667776654
No 370
>PRK04132 replication factor C small subunit; Provisional
Probab=47.24 E-value=68 Score=28.71 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=46.7
Q ss_pred cccEEEEeC-CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 78 KVNLVITDY-CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 78 ~~dlii~D~-~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++-++|+|- +.-..++...+.++-+... ..+++|+++.. ...+...+..-+.-|-.+|++.+++...+.++
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~-~~~~FILi~N~--~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNY--SSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCC-CCeEEEEEeCC--hhhCchHHhhhceEEeCCCCCHHHHHHHHHHH
Confidence 467999984 2223345555555444332 46777777653 45556777888888988999999998776653
No 371
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=47.02 E-value=1.4e+02 Score=23.45 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=38.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~~~l~~~~~~~~ 152 (153)
.|+.++=-.....-|.-+++.+. ..+|+|.... .. ..+....|..+| +..|.+.+++.+.+.+++
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma-----~G~PVI~s~~-gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll 342 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMA-----AGKPVLASTK-GG---ITEFVLEGITGYHLAEPMTSDSIISDINRTL 342 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHH-----cCCCEEEeCC-CC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 46776532222223455555544 2578865332 22 334556677888 567899999988887754
No 372
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.98 E-value=1.1e+02 Score=25.10 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=37.2
Q ss_pred cccEEEEeCCCCC----CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 78 KVNLVITDYCMPG----MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 78 ~~dlii~D~~~~~----~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..|++|++..-=. ...+..+.++++.+ +.. .|++|+-.....-....+..-.+.+.-|-+...+.+++.+
T Consensus 40 eADvviiNTC~V~~~a~~k~~~~i~~~~~~~--p~~-~iiVtGC~aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~ 113 (437)
T COG0621 40 EADVVIINTCAVREKAEQKVRSAIGELKKLK--PDA-KIIVTGCLAQAEEEILERAPEVDIVLGPQNKERLPEAIEK 113 (437)
T ss_pred cCCEEEEecCeeeehHHHHHHHHHHHHHHhC--CCC-EEEEeCCccccCHHHHhhCCCceEEECCccHHHHHHHHHH
Confidence 4688888754322 23344455555433 333 4445554333332222334445677788888887766664
No 373
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=46.94 E-value=1.7e+02 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+|+|.=.+-....++.+|+..||+...
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm 371 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVM 371 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 5787765666788999999999998754
No 374
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.89 E-value=1.6e+02 Score=23.99 Aligned_cols=72 Identities=8% Similarity=0.105 Sum_probs=45.4
Q ss_pred EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-----------CCHHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 49 TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-----------MTGYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 49 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-----------~~g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
-+.+.+++..++. ..+|.|.+.+.... ...+..+..+++......+|||+=..-
T Consensus 201 ~V~T~e~a~~l~~---------------aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI 265 (404)
T PRK06843 201 NIVTKEAALDLIS---------------VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGI 265 (404)
T ss_pred ecCCHHHHHHHHH---------------cCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCC
Confidence 4677777766652 35788887642211 122334433333211136898877777
Q ss_pred CChhhHHHHHHhcCcccc
Q 042079 118 NIPTRINECLEEGAQMFM 135 (153)
Q Consensus 118 ~~~~~~~~a~~~ga~~~l 135 (153)
....++.+|+..||+...
T Consensus 266 ~~~~Di~KALalGA~aVm 283 (404)
T PRK06843 266 RFSGDVVKAIAAGADSVM 283 (404)
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 889999999999998864
No 375
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=46.88 E-value=59 Score=22.18 Aligned_cols=55 Identities=29% Similarity=0.190 Sum_probs=36.3
Q ss_pred cccEEEEeCCCCCCCH-------HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPGMTG-------YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g-------~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..|.+.++...+...+ ...+..++. ...+|++...+-...+...++++.|++.+.
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~ 197 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKVPVIAGGGINDPEDAAEALALGADGVI 197 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 4688888766554321 233444443 246898887776666888889999988764
No 376
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=46.85 E-value=37 Score=25.57 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=36.5
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCC
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLK 140 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~ 140 (153)
+.||++|+=.-.+...|-.-.|.+-.. ..+|.|+++....... .++++..-.+|+.-|.+
T Consensus 58 ~~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 58 WDPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKKA-KDALEEEGFGYIIVKAD 117 (276)
T ss_dssp H--SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS
T ss_pred hCCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchhh-HHHHHhcCCcEEEEecC
Confidence 568999986656666777777776543 3789999998655554 45666666677665543
No 377
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=46.82 E-value=98 Score=21.60 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
+..++++.|++. ..++.++|+.............|...|+
T Consensus 96 ~~~~~L~~L~~~----g~~~~i~Sn~~~~~~~~~l~~~gl~~~f 135 (198)
T TIGR01428 96 DVPAGLRALKER----GYRLAILSNGSPAMLKSLVKHAGLDDPF 135 (198)
T ss_pred CHHHHHHHHHHC----CCeEEEEeCCCHHHHHHHHHHCCChhhh
Confidence 567888998863 4678888876544433333456654443
No 378
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.74 E-value=51 Score=25.30 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=47.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
...++.|+.......+=+..+|.+.+..|+.+++-..-+... ....|+++.-..-|.+-.-
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~---------------~~~ADIvIsAvGkp~~i~~ 217 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEV---------------CKKADILVVAIGRPKFIDE 217 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEcCCCcCccCH
Confidence 468999999999999999999998899888887654433322 1347999999888876443
No 379
>PRK06801 hypothetical protein; Provisional
Probab=46.48 E-value=1.2e+02 Score=23.34 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=36.4
Q ss_pred CcccEEEEeCCC-------CCCCHHHHHHHHHhccCCCCCcEEEEeCCC-ChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCM-------PGMTGYELLKKIKESSVMKEVPVVVVSSEN-IPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~-------~~~~g~~~~~~lr~~~~~~~~pii~~t~~~-~~~~~~~a~~~ga~~~ 134 (153)
+.+|.+=+-+.- ...-+++.++.+++.. .+|+++..++. ..+...++.+.|++.+
T Consensus 168 tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~---~~PLVlHGGSgi~~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 168 TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT---GLPLVLHGGSGISDADFRRAIELGIHKI 230 (286)
T ss_pred HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEE
Confidence 467777663311 1124788889988743 68998887643 5667788888888643
No 380
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.43 E-value=1.6e+02 Score=23.93 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=31.9
Q ss_pred cccEEEEeCCCCCCC----HHHHH---HHHHhccCCCCCcEEEEeCCCChhhHHHHH-HhcCcccccCCCChhHHHHHHh
Q 042079 78 KVNLVITDYCMPGMT----GYELL---KKIKESSVMKEVPVVVVSSENIPTRINECL-EEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 78 ~~dlii~D~~~~~~~----g~~~~---~~lr~~~~~~~~pii~~t~~~~~~~~~~a~-~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
..|+++++..--... ....+ +++++.. +.++|+ +++......-.+.+ .....|++..+-....+.+++.
T Consensus 37 ~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~--p~~~iv-v~Gc~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~ 113 (437)
T PRK14331 37 EADLILVNTCTIREKPDQKVLSHLGEYKKIKEKN--PNALIG-VCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLE 113 (437)
T ss_pred cCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhC--CCCEEE-EEcchhcCChHHHHhcCCCCcEEECCCCHHHHHHHHH
Confidence 468888876544332 23333 3334322 444444 44421111111222 2333456666666666655554
Q ss_pred h
Q 042079 150 H 150 (153)
Q Consensus 150 ~ 150 (153)
.
T Consensus 114 ~ 114 (437)
T PRK14331 114 Q 114 (437)
T ss_pred H
Confidence 3
No 381
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=46.41 E-value=1.2e+02 Score=22.48 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=38.8
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh-cCccccc------CCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE-GAQMFML------KPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~-ga~~~l~------KP~~~~~l~~~~~~ 150 (153)
+++++.+++. ..+|+|+-..-.+.++..++++. |++..+. .-++..++++.+.+
T Consensus 186 ~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 186 LELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred HHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 6778888764 36899988877888888888875 8876543 45677777665543
No 382
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.17 E-value=58 Score=25.10 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
...+++|+.......+=+..+|.+.+..|+.+++...-+... ....|+++.-..-|..-.
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~---------------~~~ADIvv~AvG~p~~i~ 222 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKY---------------TLDADILVVATGVKHLIK 222 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHH---------------HhhCCEEEEccCCccccC
Confidence 468999999999999999999998898888887654433322 235799998887776543
No 383
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.14 E-value=1.2e+02 Score=23.40 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+.++++|+... +..+|.+=+ .+.+...++.+.|+|-.+.--++++++++.+..+
T Consensus 180 ~~av~~~r~~~~-~~~kIeVEv--~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~ 234 (281)
T PRK06543 180 TEALRHVRAQLG-HTTHVEVEV--DRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELV 234 (281)
T ss_pred HHHHHHHHHhCC-CCCcEEEEe--CCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHh
Confidence 456666676432 134554444 5778888999999999999999999999887643
No 384
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=45.96 E-value=52 Score=18.98 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
.+..+.|+-|++.....+..+++..|+.+....
T Consensus 26 ~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 26 PGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp TT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 345677888888888999999999999866554
No 385
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=45.85 E-value=71 Score=22.53 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHhcCcccc--cCCCChhHHHH
Q 042079 123 INECLEEGAQMFM--LKPLKPSDVKK 146 (153)
Q Consensus 123 ~~~a~~~ga~~~l--~KP~~~~~l~~ 146 (153)
...+.+.|..-.+ ..|.++.+..+
T Consensus 96 i~~~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 96 VKAAKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 3444455665543 57777777665
No 386
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.71 E-value=57 Score=18.59 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
+.-.+.++-|++.....+..+++..|+.+....
T Consensus 25 ~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 25 SGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEE
Confidence 456678888888888899999999999876544
No 387
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=45.70 E-value=93 Score=23.08 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
...+|.|++---.|...|-.-.+.+.+. ..+|.|+++.........+..+.|.--.+.|+
T Consensus 58 ~~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~vkdeleeqGlGYIivk~ 117 (277)
T COG1927 58 EFNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLKVKDELEEQGLGYIIVKA 117 (277)
T ss_pred hcCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCccchhHHHHHhcCCeEEEecC
Confidence 4678999987666666777767776543 47899999876655555555556654445554
No 388
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=45.67 E-value=1.2e+02 Score=22.39 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=40.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc----EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC----KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~----~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
..-+++.|-+++..+......+...+. ++...+..++.+..+ ...|.+++|+... +-.
T Consensus 68 TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~----------------~~iDF~vVDc~~~--d~~ 129 (218)
T PF07279_consen 68 TGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL----------------KGIDFVVVDCKRE--DFA 129 (218)
T ss_pred cCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc----------------cCCCEEEEeCCch--hHH
Confidence 345566666666667677777776654 233344455566554 3589999999853 333
Q ss_pred -HHHHHHH
Q 042079 95 -ELLKKIK 101 (153)
Q Consensus 95 -~~~~~lr 101 (153)
++++.++
T Consensus 130 ~~vl~~~~ 137 (218)
T PF07279_consen 130 ARVLRAAK 137 (218)
T ss_pred HHHHHHhc
Confidence 5556554
No 389
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=45.53 E-value=1.2e+02 Score=23.03 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=37.5
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..++.+|+.. +.-..|-++.. +.+...+|.+.|+|-...-|++++.+++....+
T Consensus 166 ~av~~~r~~~--~~~~~Igvev~-t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 166 KAVKRARAAA--PFALKIEVEVE-SLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred HHHHHHHHhC--CCCCeEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3456666643 22234445543 667788899999997778999999999877643
No 390
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=45.47 E-value=1.1e+02 Score=21.83 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCcccEEEEeCCC-----CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH
Q 042079 76 GTKVNLVITDYCM-----PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE 125 (153)
Q Consensus 76 ~~~~dlii~D~~~-----~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 125 (153)
+..+|++|+|--+ .=.+--++++.|+.++ +.+ =+++|+...+....+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp--~~~-evILTGR~~p~~Lie 164 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRP--SHV-DVILTGPEMPESLLA 164 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC--CCC-EEEEECCCCCHHHHH
Confidence 4679999999422 3346677888888654 334 455888766665543
No 391
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.43 E-value=1e+02 Score=22.61 Aligned_cols=55 Identities=24% Similarity=0.422 Sum_probs=31.3
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhccCC--CCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 79 VNLVITDYCMPGMTG-------YELLKKIKESSVM--KEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 79 ~dlii~D~~~~~~~g-------~~~~~~lr~~~~~--~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.|.|++=...|+..| ++-++++++.... ..+||.+ -+.-+.+.+.++.+.||+.+
T Consensus 129 ~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~v 192 (220)
T PRK08883 129 VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMF 192 (220)
T ss_pred CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEE
Confidence 565554333455444 3345555543211 1355554 44456888889999999965
No 392
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=45.42 E-value=88 Score=24.92 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=45.2
Q ss_pred ccEEEEeCCCCCCCHHH-HHHHHHhccCCCCCcEEEEeCCC-ChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 79 VNLVITDYCMPGMTGYE-LLKKIKESSVMKEVPVVVVSSEN-IPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~-~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++++...+..--++ ++..+.. ....++...... +......+++.|+++.+.+|-++.+++++...
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~----~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~ 166 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQG----SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVAL 166 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 56777777666544333 3444432 244566555432 34445678899999999999999999987654
No 393
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.36 E-value=1.1e+02 Score=23.61 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++++|+... +..+|.+=+ .+.++..++.+.|+|-.+.--++++++++.+..
T Consensus 184 ~~av~~~r~~~~-~~~kIeVEv--~tleea~~a~~agaDiImLDnmspe~l~~av~~ 237 (290)
T PRK06559 184 QKAIAQARAYAP-FVKMVEVEV--ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITL 237 (290)
T ss_pred HHHHHHHHHhCC-CCCeEEEEC--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 456677776442 134554444 567888999999999999999999999988764
No 394
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.26 E-value=1.6e+02 Score=24.17 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=36.4
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHH-hcCcccccCC
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLE-EGAQMFMLKP 138 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~-~ga~~~l~KP 138 (153)
..||+|.+....+.. ..+++++.+|+.. +.++|++-....+ ....++++ ....||+..-
T Consensus 67 ~~~Dlv~is~~t~~~~~~~~ia~~iK~~~--p~~~vv~GG~h~t-~~pe~~l~~~~~vD~Vv~G 127 (472)
T TIGR03471 67 KDYDLVVLHTSTPSFPSDVKTAEALKEQN--PATKIGFVGAHVA-VLPEKTLKQGPAIDFVCRR 127 (472)
T ss_pred cCCCEEEEECCCcchHHHHHHHHHHHHhC--CCCEEEEECCCcc-cCHHHHHhcCCCeeEEEeC
Confidence 358999998766654 5788888888764 5676665544433 23334554 3445666553
No 395
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.20 E-value=46 Score=25.62 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=46.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
...++.|+.......+=+..+|.+.+..|+.+++-..-+... ....|+++.-..-|.+-.
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~---------------~~~ADIvIsAvGk~~~i~ 217 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSI---------------VRQADIIVGAVGKPEFIK 217 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEeCCCcCccC
Confidence 467999999999999999999998899998888655433322 134799999887777644
No 396
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=44.91 E-value=62 Score=24.33 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=35.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 80 NLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 80 dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.++|+|+.-....--..++.+.+....-.+|+-+=.+-.+.+++.+.+..|||-.
T Consensus 46 ElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKV 100 (256)
T COG0107 46 ELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKV 100 (256)
T ss_pred eEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCee
Confidence 5899999776543233333443322223567665555567888999999999865
No 397
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=44.81 E-value=86 Score=21.87 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=39.6
Q ss_pred CcccEEEEeC--CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 77 TKVNLVITDY--CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~--~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..+.++|+|- .+.....-.+++.+.+ . .+.+.+|+++.. ......++..-+.-+-.+|++.+++...+.+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~-~-~~~~~~il~~~~--~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE-P-PPNTLFILITPS--PEKLLPTIRSRCQVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC-C-CCCeEEEEEECC--hHhChHHHHhhcEEeeCCCCCHHHHHHHHHH
Confidence 4567888874 2222122234444443 2 134555555542 3445555665666777889999998876654
No 398
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=44.71 E-value=41 Score=27.40 Aligned_cols=40 Identities=35% Similarity=0.591 Sum_probs=31.3
Q ss_pred EEEE--eCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 111 VVVV--SSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 111 ii~~--t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
|+++ |..+..-.+..|+..-+.-|..||++.+++..++.+
T Consensus 133 iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 133 IILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred EEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 4444 334445556778999999999999999999999988
No 399
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=44.66 E-value=39 Score=28.32 Aligned_cols=29 Identities=3% Similarity=0.007 Sum_probs=24.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcE-EEEe
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACK-VTTA 50 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~-v~~~ 50 (153)
+||+||....+-..+...|++.|+. +...
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~ 30 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVV 30 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEE
Confidence 3899999999999999999998875 5555
No 400
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=44.60 E-value=1e+02 Score=23.69 Aligned_cols=54 Identities=11% Similarity=0.269 Sum_probs=39.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+.++.+|+.. +..+|. ..-.+.+...++.+.|+|-.+.--+++++++++...+
T Consensus 177 ~~av~~~r~~~--~~~kIe--VEv~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~ 230 (284)
T PRK06096 177 SGAINQLRRHA--PEKKIV--VEADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHHhC--CCCCEE--EECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35666677643 344543 3335788899999999999999999999999887643
No 401
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.59 E-value=56 Score=25.31 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
...++.|+.......+=+..+|.+.+..|..+++...-+... ....|+++.-+.-|.+-
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~---------------~~~ADIvIsAvGkp~~i 215 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASI---------------TREADILVAAAGRPNLI 215 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEccCCcCcc
Confidence 468999999999999999999998899888887655433322 13479999888777653
No 402
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=44.51 E-value=1.1e+02 Score=21.66 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=48.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+..+|.++.....++.-++..++. +. ...+..+.+..+. .....+|+|++|--.......+++
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~------------~~~~~~dvv~~DPPy~~~~~~~~l 140 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA------------KKPTFDNVIYLDPPFFNGALQALL 140 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh------------ccCCCceEEEECcCCCCCcHHHHH
Confidence 36999999999888888777766542 33 3333333333221 012348999999644443445566
Q ss_pred HHHHhccCCCCCcEEEEe
Q 042079 98 KKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t 115 (153)
+.+.+......--+|++-
T Consensus 141 ~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 141 ELCENNWILEDTVLIVVE 158 (189)
T ss_pred HHHHHCCCCCCCeEEEEE
Confidence 666554444444455443
No 403
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=44.51 E-value=84 Score=24.16 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 91 MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 91 ~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.-|+.+++.+.. .+|+|....... ..+....|..+++..|-+.+++.+.+.+++
T Consensus 290 g~~~~~lEAma~-----G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll 343 (372)
T cd04949 290 GFGLSLMEALSH-----GLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELL 343 (372)
T ss_pred ccChHHHHHHhC-----CCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHH
Confidence 345666666552 578875432211 234556788899999999999988877754
No 404
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.40 E-value=50 Score=25.39 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=47.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
...++.|+.......+=+..+|.+.+..|+.+++-..-+... ....|+++.-+.-|.+-..+
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~---------------~~~ADIvI~AvG~p~~i~~~ 216 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQL---------------TKEADILVVAVGVPHFIGAD 216 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHH---------------HhhCCEEEEccCCcCccCHH
Confidence 457999999999999999999998898888887554333322 13469999998888764433
No 405
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.36 E-value=55 Score=25.18 Aligned_cols=61 Identities=26% Similarity=0.209 Sum_probs=46.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
...++.|+.......+=+..+|.+.+..|..+++...-+... ....|+++.-..-|..-..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~---------------~k~ADIvIsAvGkp~~i~~ 217 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSH---------------TTKADILIVAVGKPNFITA 217 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHH---------------hhhcCEEEEccCCcCcCCH
Confidence 467999999999999999999998898888887655433322 2357999998888876443
No 406
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.35 E-value=82 Score=23.13 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=46.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCc-E-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSAC-K-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~-~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
+|.-+|-++......++-|+..|| + .....|+...+.. ..+||.|++...-+... -.++++
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~----------------~aPyD~I~Vtaaa~~vP-~~Ll~Q 158 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE----------------EAPYDRIIVTAAAPEVP-EALLDQ 158 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC----------------CCCcCEEEEeeccCCCC-HHHHHh
Confidence 678888888888888888888887 3 3456666655442 35899999998877765 356677
Q ss_pred HHh
Q 042079 100 IKE 102 (153)
Q Consensus 100 lr~ 102 (153)
|+.
T Consensus 159 L~~ 161 (209)
T COG2518 159 LKP 161 (209)
T ss_pred ccc
Confidence 765
No 407
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.32 E-value=49 Score=25.54 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=47.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
...++.|+.......+=+..+|.+.+..|+.+++-..-+... ....|+++.-..-|.+-.-+
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~---------------~~~ADIvV~AvGkp~~i~~~ 219 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSI---------------TSKADIVVAAIGSPLKLTAE 219 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEccCCCCccCHH
Confidence 467899999999999999999998898888887655433322 23479999988877754433
No 408
>PLN02476 O-methyltransferase
Probab=44.30 E-value=1.4e+02 Score=22.82 Aligned_cols=58 Identities=9% Similarity=0.100 Sum_probs=39.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC 87 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~ 87 (153)
..+|.-+|-++...+..+..+++.|+. +. ...+..+.+..+... ....+||+||+|..
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~----------~~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN----------GEGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc----------ccCCCCCEEEECCC
Confidence 456899999999999999999988864 33 344555555433100 01247999999975
No 409
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=44.24 E-value=62 Score=25.13 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=45.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
...++.|+.......+=+..+|.+.+..|+.+++-..-++.. ....|+++.-..-|..-.
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~---------------~~~ADIvv~AvGk~~~i~ 225 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESI---------------VREADIVIAAAGQAMMIK 225 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEcCCCcCccC
Confidence 468999999999999999999998899998887655433322 235799999887765433
No 410
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.22 E-value=1.2e+02 Score=23.20 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=37.0
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..++..|+.. +..+| -+.. .+.+...+|.+.|+|-...-++++++++++...
T Consensus 178 ~av~~~r~~~--~~~~I-~VEv-~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~ 229 (277)
T PRK05742 178 QAVAAAHRIA--PGKPV-EVEV-ESLDELRQALAAGADIVMLDELSLDDMREAVRL 229 (277)
T ss_pred HHHHHHHHhC--CCCeE-EEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 3456666542 34444 3443 357778899999999988899999999987754
No 411
>PRK06849 hypothetical protein; Provisional
Probab=44.14 E-value=1.6e+02 Score=23.28 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=27.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMR 55 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~ 55 (153)
+.++|||.+........+...|.+.|+.|..+.+...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3578999998876666666777778999887766543
No 412
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=43.82 E-value=1.3e+02 Score=22.35 Aligned_cols=100 Identities=13% Similarity=0.207 Sum_probs=61.3
Q ss_pred HHHHHHhcCcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-----CCCHHHHHHHHHhccCCCC
Q 042079 36 VENLLKNSACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-----GMTGYELLKKIKESSVMKE 108 (153)
Q Consensus 36 l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-----~~~g~~~~~~lr~~~~~~~ 108 (153)
+-..|+..|+.+. -+.++...+..+. ..+||+|=+|-++- +.....+++.|-.....-.
T Consensus 141 ~l~~L~~~G~~ialDDFGtG~ssl~~L~--------------~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~ 206 (256)
T COG2200 141 LLRQLRELGVRIALDDFGTGYSSLSYLK--------------RLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLG 206 (256)
T ss_pred HHHHHHHCCCeEEEECCCCCHHHHHHHh--------------hCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCC
Confidence 3344566787654 4667777777773 46789998875332 2334456666543221124
Q ss_pred CcEEEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHHHHHHhh
Q 042079 109 VPVVVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 109 ~pii~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l~~~~~~ 150 (153)
+.+| .-+-.+.+....+.+.|++ + |+.||...+++.+...+
T Consensus 207 ~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 207 LTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred CEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHhh
Confidence 4444 3334466777778888986 3 47889998888776643
No 413
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=43.79 E-value=1.2e+02 Score=21.57 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=30.0
Q ss_pred CCcccEEEEeCCC-----CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH
Q 042079 76 GTKVNLVITDYCM-----PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE 125 (153)
Q Consensus 76 ~~~~dlii~D~~~-----~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 125 (153)
+..+|++|+|--+ .-.+.-++++.|+.++ +.+ =+++|+..-+....+
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp--~~~-evVlTGR~~p~~l~e 146 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERP--GHQ-HVIITGRGCPQDLLE 146 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC--CCC-EEEEECCCCCHHHHH
Confidence 4679999999422 2345567888887644 344 445888766665544
No 414
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.51 E-value=73 Score=24.51 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
...++.|+.......+=+..+|.+.+..|+.+++...-+... ....|+++.-..-|..-.
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~---------------~~~ADIvI~AvG~p~~i~ 216 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAEL---------------TKQADILIVAVGKPKLIT 216 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHH---------------HHhCCEEEEecCCCCcCC
Confidence 568999999999999999999998888888887655444322 134799999887777533
No 415
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=43.37 E-value=60 Score=24.63 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccCCCChhHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLKPLKPSDVK 145 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~KP~~~~~l~ 145 (153)
++.++.+++.. ++|||....-.+.+.+.+++..||+.. +.-|.-..++.
T Consensus 220 ~~~i~~i~~~~---~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~ 274 (296)
T cd04740 220 LRMVYQVYKAV---EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEII 274 (296)
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHH
Confidence 57778887642 689998888788999999999998754 33454444444
No 416
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.33 E-value=54 Score=25.22 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=47.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
...++.|+.......+=+..+|.+.+..|+.+++...-+... ....|+++.-..-|.+-.-+
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~---------------~~~ADIvIsAvGkp~~i~~~ 217 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLY---------------TRQADLIIVAAGCVNLLRSD 217 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEcCCCcCccCHH
Confidence 468999999999999999999998898888887755433322 13479999988888764433
No 417
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.32 E-value=87 Score=24.70 Aligned_cols=70 Identities=14% Similarity=0.268 Sum_probs=39.3
Q ss_pred CcccEEEEeC-CCCCCCHH-HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 77 TKVNLVITDY-CMPGMTGY-ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~-~~~~~~g~-~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..+.++|+|- ++-...++ .+++.+.+.. ..+.+|+.+. +.......+..-+..|-.+|++.+++...+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~--~~~~fIl~t~--~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPP--QHIKFILATT--DVEKIPKTILSRCLQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCC--CCeEEEEEcC--ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 4567888874 22222223 3444454321 3444555543 23334445555556788899999998876654
No 418
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.28 E-value=1.8e+02 Score=23.75 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-CCC---CHHHHHHHHHh-
Q 042079 28 DSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-PGM---TGYELLKKIKE- 102 (153)
Q Consensus 28 d~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-~~~---~g~~~~~~lr~- 102 (153)
-|....+.+...|.+.||.... + ....|++|++..- -.. .....+.++..
T Consensus 18 ~N~~ds~~~~~~l~~~G~~~~~--~-----------------------~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~ 72 (448)
T PRK14333 18 MNKADSERMAGILEDMGYQWAE--D-----------------------ELQADLVLYNTCTIRDNAEQKVYSYLGRQAKR 72 (448)
T ss_pred CcHHHHHHHHHHHHHCcCEECC--C-----------------------cccCCEEEEEeeeeeehHHHHHHHHHHHHHHH
Confidence 4556667777778777775532 1 1235788876432 222 23333333311
Q ss_pred ccCCCCCcEEEEeCCCChhhHHHHHH-hcCcccccCCCChhHHHHHHhh
Q 042079 103 SSVMKEVPVVVVSSENIPTRINECLE-EGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 103 ~~~~~~~pii~~t~~~~~~~~~~a~~-~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
+...+..+|+ +++........+.++ ....|++..+-....+.+++..
T Consensus 73 k~~~p~~~vv-v~Gc~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~ 120 (448)
T PRK14333 73 KHKNPDLTLV-VAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQ 120 (448)
T ss_pred HhcCCCCEEE-EECccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHH
Confidence 1112444444 544333333344443 3334556677666666665544
No 419
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=43.21 E-value=31 Score=24.75 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=38.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcE--EEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACK--VTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~--v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.++.-+|-++......++.+...++. +.. ..+..+.+. ...+||+|+++...+... -++.
T Consensus 98 g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~----------------~~~~fD~Ii~~~~~~~~~-~~l~ 160 (205)
T PRK13944 98 GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE----------------KHAPFDAIIVTAAASTIP-SALV 160 (205)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc----------------cCCCccEEEEccCcchhh-HHHH
Confidence 47889999988887777777666542 332 233322211 124799999998765443 2444
Q ss_pred HHHH
Q 042079 98 KKIK 101 (153)
Q Consensus 98 ~~lr 101 (153)
+.|+
T Consensus 161 ~~L~ 164 (205)
T PRK13944 161 RQLK 164 (205)
T ss_pred HhcC
Confidence 5444
No 420
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.83 E-value=67 Score=24.89 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=46.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
...++.|+.......+=+..+|.+.+..|+.+++-..-+... ....|+++.-+.-|.+-.-
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~---------------~~~ADIvVsAvGkp~~i~~ 219 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADY---------------CSKADILVAAVGIPNFVKY 219 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEccCCcCccCH
Confidence 457999999999999999999998899888888755433322 1347999998887776443
No 421
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=42.65 E-value=1.3e+02 Score=21.85 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=37.7
Q ss_pred CcccEEEEeCCCCC--------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPG--------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~--------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..+|.+++.--.+. .-|++.++.+.+.. .++|++++.+- +.+.+.++...|++++
T Consensus 121 ~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~--~~~PV~AiGGI-~~~ni~~l~~~Ga~Gi 183 (211)
T PRK03512 121 ARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL--ADYPTVAIGGI-SLERAPAVLATGVGSI 183 (211)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCC-CHHHHHHHHHcCCCEE
Confidence 46899998754432 23667777766432 36899988875 5677788888888764
No 422
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.63 E-value=1.5e+02 Score=22.48 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=18.6
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCcEEEE
Q 042079 20 PPHVLAVDDSIV---DRKIVENLLKNSACKVTT 49 (153)
Q Consensus 20 ~~~iLiidd~~~---~~~~l~~~l~~~~~~v~~ 49 (153)
..++++++-|.. ....+..+.+..+..+..
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~ 132 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIK 132 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEe
Confidence 467888887752 235556666666655443
No 423
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.61 E-value=1.4e+02 Score=23.11 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=29.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
....+|.++........-+...|.+.|+.+..++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 3568999999999999999999988899998885
No 424
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=42.54 E-value=1.3e+02 Score=23.08 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+.++.+|+.. +..+|.+=. .+.+...++.+.|+|-.+.--++++++++.+..+
T Consensus 176 ~~av~~~r~~~--~~~kIeVEv--~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l 229 (277)
T TIGR01334 176 GGAIGRLKQTA--PERKITVEA--DTIEQALTVLQASPDILQLDKFTPQQLHHLHERL 229 (277)
T ss_pred HHHHHHHHHhC--CCCCEEEEC--CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHH
Confidence 45677777643 345544333 4788889999999999999999999999887654
No 425
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=42.32 E-value=1.3e+02 Score=22.17 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=40.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
..++-+| ........++++.+++.. ..+|+++=.+-.+.+.+.++++.||+.++.-.
T Consensus 149 ~~ivyLe-~SG~~~~~e~I~~v~~~~--~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 149 MPIVYLE-YSGAYGPPEVVRAVKKVL--GDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CeEEEeC-CCCCcCCHHHHHHHHHhc--CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 6677777 223334588899998742 15788865556688889999999999887654
No 426
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=42.22 E-value=1e+02 Score=20.59 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=41.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++=... +.-|..+++.+.. .+|+| .+.. ....+....+..+++..|.+.+++...+.+++
T Consensus 93 ~di~v~~s~~-e~~~~~~~Ea~~~-----g~pvI-~~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 93 SDIFVSPSRN-EGFGLSLLEAMAC-----GCPVI-ASDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp TSEEEE-BSS-BSS-HHHHHHHHT-----T-EEE-EESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHH
T ss_pred ceeccccccc-ccccccccccccc-----cccee-eccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHH
Confidence 4666654433 4456677777653 45666 3432 33346667778899999999999998887754
No 427
>PRK14098 glycogen synthase; Provisional
Probab=42.17 E-value=2e+02 Score=23.79 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=35.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.|+.++=- ....-|+..++.++. ..|+|+.......+.+.+....+..+|+..|.+++.+.+.+.++
T Consensus 382 aDi~l~PS-~~E~~Gl~~lEAma~-----G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~ 448 (489)
T PRK14098 382 LDMLLMPG-KIESCGMLQMFAMSY-----GTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEA 448 (489)
T ss_pred CCEEEeCC-CCCCchHHHHHHHhC-----CCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHH
Confidence 46666421 222345666666553 33444333222222221211235678999999999998877654
No 428
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.16 E-value=1.2e+02 Score=23.40 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=44.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
....+++|+.......+-+..+|.+.|..|+.+++-..-+... -...|++|.-..-|..
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~---------------~~~ADIVIsAvg~p~~ 214 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASY---------------LKDADVIVSAVGKPGL 214 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHH---------------HhhCCEEEECCCCCcc
Confidence 3568999999999999999999998898888777643322221 1357999998877654
No 429
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=41.70 E-value=19 Score=26.02 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE-EEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK-VTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~-v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..++.-+|-++......++.++..++. +.. ..+..+... ...+||+|+++...+... -.+.
T Consensus 101 ~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~----------------~~~~fD~I~~~~~~~~~~-~~l~ 163 (212)
T PRK13942 101 SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE----------------ENAPYDRIYVTAAGPDIP-KPLI 163 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC----------------cCCCcCEEEECCCcccch-HHHH
Confidence 357888999998888888888766642 222 222221110 235799999988766543 2444
Q ss_pred HHHH
Q 042079 98 KKIK 101 (153)
Q Consensus 98 ~~lr 101 (153)
+.|+
T Consensus 164 ~~Lk 167 (212)
T PRK13942 164 EQLK 167 (212)
T ss_pred HhhC
Confidence 5444
No 430
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.60 E-value=62 Score=24.90 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=46.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
...++.|+.......+=+..+|.+.+..|+.+++...-+... ....|+++.-..-|..-.
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~---------------~~~ADIvI~AvGk~~~i~ 215 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGE---------------VGRADILVAAIGKAELVK 215 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEecCCcCccC
Confidence 468999999999999999999998888888888655433322 134799999887776543
No 431
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=41.54 E-value=1.7e+02 Score=22.97 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=58.6
Q ss_pred eEEEEeCC----HHHHHHHHHHHHhcC-cEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-----
Q 042079 22 HVLAVDDS----IVDRKIVENLLKNSA-CKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP----- 89 (153)
Q Consensus 22 ~iLiidd~----~~~~~~l~~~l~~~~-~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~----- 89 (153)
.++.+|-. ....+.++.+-+..+ ..+. .+.+.+++..+.. ..+|.+.+...-.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~---------------aGad~i~vg~~~G~~~~t 177 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN---------------AGADATKVGIGPGKVCIT 177 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH---------------cCcCEEEECCCCCccccc
Confidence 56777542 223333444433333 2222 3678887766652 4578887653221
Q ss_pred ------CCC--HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 90 ------GMT--GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 90 ------~~~--g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
... ++..++.+++. .++|||.-.+-.+..++.+|+..||+.+.
T Consensus 178 ~~~~g~~~~~w~l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~ 228 (326)
T PRK05458 178 KIKTGFGTGGWQLAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVM 228 (326)
T ss_pred ccccCCCCCccHHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEE
Confidence 112 45557777753 25899888888889999999999998753
No 432
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.44 E-value=59 Score=25.05 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=46.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
...++.|+.......+=+..+|.+.+..|+.+++...-+... ....|+++.-..-|..-.
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~---------------~~~ADIvI~AvG~~~~i~ 215 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQV---------------AKEADILVVATGLAKFVK 215 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEecCCcCccC
Confidence 468999999999999999999998898888887655433322 134799999888777543
No 433
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.43 E-value=1.9e+02 Score=23.46 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH----HHHH---HHHH
Q 042079 29 SIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG----YELL---KKIK 101 (153)
Q Consensus 29 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g----~~~~---~~lr 101 (153)
|....+.+...|...||.+.. .....|+++++..--..+. ...+ ++++
T Consensus 16 N~~ds~~~~~~l~~~g~~~~~-------------------------~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k 70 (444)
T PRK14325 16 NEYDSSKMADLLGAEGYELTD-------------------------DPEEADLILLNTCSIREKAQEKVFSELGRWRKLK 70 (444)
T ss_pred cHHHHHHHHHHHHHCcCEECC-------------------------CcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHH
Confidence 455556667777777765532 1224689998765433322 2222 3334
Q ss_pred hccCCCCCcEEEEeCCCChhhHHHHHH-hcCcccccCCCChhHHHHHHhh
Q 042079 102 ESSVMKEVPVVVVSSENIPTRINECLE-EGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~~~~~~~~a~~-~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
+.. +.++|| +++........++++ ....||+..+-....+.+++..
T Consensus 71 ~~~--p~~~vv-vgGc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~ 117 (444)
T PRK14325 71 EKN--PDLIIG-VGGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIAR 117 (444)
T ss_pred HhC--CCCEEE-EECchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHH
Confidence 332 455555 544433333344543 4445566677666666666554
No 434
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=41.41 E-value=71 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=15.9
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+.++.++.+...+...+++..-++.|+
T Consensus 148 gislvpLvaPsTtdeRmell~~~adsFi 175 (268)
T KOG4175|consen 148 GISLVPLVAPSTTDERMELLVEAADSFI 175 (268)
T ss_pred CceEEEeeCCCChHHHHHHHHHhhcceE
Confidence 3455556555555555566665565554
No 435
>PF07194 P2: P2 response regulator binding domain; InterPro: IPR010808 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The response regulators for CheA bind to the P2 domain, which is found between IPR008207 from INTERPRO and IPR004105 from INTERPRO as either one or two copies. Highly flexible linkers connect P2 to the rest of CheA and impart remarkable mobility to the P2 domain. This feature is thought to enhance the inter CheA dimer phosphotransfer reactions within the signalling complex, thereby amplifying the phosphorylation signal [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0006928 cellular component movement; PDB: 1U0S_A.
Probab=41.35 E-value=8.1 Score=23.69 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=38.0
Q ss_pred cEEEE-eCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 80 NLVIT-DYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 80 dlii~-D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+-|- |+.|++..++-+++.|++.+ -++-+.+...+.....+..|..-|+..+.+.+++.+.+..
T Consensus 6 ~v~~~~~c~Mk~vRa~~vl~~L~~~g------~vi~t~P~~e~ie~~~~~~~f~~~~~s~~~~e~i~~~l~~ 71 (84)
T PF07194_consen 6 KVEFDEDCPMKNVRAFMVLQALEELG------EVIKTIPSREEIEDGEFEDGFDVLFESDEDEEEIEEVLAS 71 (84)
T ss_dssp EEE--TT-SSHHHHHHHHHHHHHHTT------EEEEEES-HHHHHTT-SSSEEEEEEEESS-HHHHHHHHHT
T ss_pred EEEECCCCCchhccHHHHHHHHHhhC------eEEEEcCCHHHHhCCCcCcEEEEEEEeCCCHHHHHHHHhC
Confidence 34444 57888888888899998743 3334444322222223345566677788889999887765
No 436
>TIGR03586 PseI pseudaminic acid synthase.
Probab=41.33 E-value=1.7e+02 Score=22.94 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEE
Q 042079 34 KIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVV 113 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~ 113 (153)
..+..+-++.|..+.+..-..+.++++. .+++=++-+...++.-+.+++.+.+. ..|||+
T Consensus 80 ~~L~~~~~~~Gi~~~stpfd~~svd~l~----------------~~~v~~~KI~S~~~~n~~LL~~va~~----gkPvil 139 (327)
T TIGR03586 80 KELFERAKELGLTIFSSPFDETAVDFLE----------------SLDVPAYKIASFEITDLPLIRYVAKT----GKPIIM 139 (327)
T ss_pred HHHHHHHHHhCCcEEEccCCHHHHHHHH----------------HcCCCEEEECCccccCHHHHHHHHhc----CCcEEE
Confidence 3455556677877666555555667762 13334555666677779999998864 469998
Q ss_pred EeCCCChhhHHHHH
Q 042079 114 VSSENIPTRINECL 127 (153)
Q Consensus 114 ~t~~~~~~~~~~a~ 127 (153)
=|+..+.++...|.
T Consensus 140 stG~~t~~Ei~~Av 153 (327)
T TIGR03586 140 STGIATLEEIQEAV 153 (327)
T ss_pred ECCCCCHHHHHHHH
Confidence 88887766665554
No 437
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=41.13 E-value=1.6e+02 Score=22.35 Aligned_cols=101 Identities=7% Similarity=0.096 Sum_probs=56.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEE---ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC------CH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTT---AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM------TG 93 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~------~g 93 (153)
++|.|-.......+...+++.|..... -.+..+-++.+.. ....|=.++.-..-.+. +-
T Consensus 123 viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~------------~a~gFIY~vS~~GvTG~~~~~~~~~ 190 (263)
T CHL00200 123 LIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIAR------------AAPGCIYLVSTTGVTGLKTELDKKL 190 (263)
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH------------hCCCcEEEEcCCCCCCCCccccHHH
Confidence 556666666666666777777754332 2233334444321 12334444432222221 23
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
.++++++|+. .+.|+.+=-+-.+.+...++.+.|||.++.-.
T Consensus 191 ~~~i~~ir~~---t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 4566777763 36788764444568888888899999886654
No 438
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=41.12 E-value=75 Score=23.68 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=39.8
Q ss_pred cEEEEeCCCCC---CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 80 NLVITDYCMPG---MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 80 dlii~D~~~~~---~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+.+.|+.-.. ...+++++++++.. .+|+++-.+-.+.+.+.+++..|++..+.
T Consensus 46 ~l~v~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 46 ELVFLDITASSEGRTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred EEEEEcCCcccccChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 46777876443 23467778887642 68998888888899999999999877643
No 439
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.09 E-value=73 Score=20.68 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEE
Q 042079 33 RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVV 112 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii 112 (153)
...+++ |.+.|+.++.++...+-+.-...+... ......+|++++- .|.....++++.+...+. --++
T Consensus 17 ~~v~~~-l~~~G~~v~~Vnp~~~~i~G~~~y~sl------~e~p~~iDlavv~--~~~~~~~~~v~~~~~~g~---~~v~ 84 (116)
T PF13380_consen 17 YRVLRN-LKAAGYEVYPVNPKGGEILGIKCYPSL------AEIPEPIDLAVVC--VPPDKVPEIVDEAAALGV---KAVW 84 (116)
T ss_dssp HHHHHH-HHHTT-EEEEESTTCSEETTEE-BSSG------GGCSST-SEEEE---S-HHHHHHHHHHHHHHT----SEEE
T ss_pred HHHHHH-HHhCCCEEEEECCCceEECcEEeeccc------cCCCCCCCEEEEE--cCHHHHHHHHHHHHHcCC---CEEE
Confidence 334444 445788888777544322222111111 1113678888854 466667788888876541 1344
Q ss_pred EEeCCCChhhHHHHHHhcC
Q 042079 113 VVSSENIPTRINECLEEGA 131 (153)
Q Consensus 113 ~~t~~~~~~~~~~a~~~ga 131 (153)
+.++..+++....+.+.|.
T Consensus 85 ~~~g~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 85 LQPGAESEELIEAAREAGI 103 (116)
T ss_dssp E-TTS--HHHHHHHHHTT-
T ss_pred EEcchHHHHHHHHHHHcCC
Confidence 4555445555555555554
No 440
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=41.06 E-value=1.6e+02 Score=22.40 Aligned_cols=63 Identities=8% Similarity=0.076 Sum_probs=38.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|+.++-.. ..-|+..++.+. ...|+|....... .+....|..+++..|-+++++.+.+.+++
T Consensus 262 ad~~v~ps~--e~~g~~~~Eama-----~G~Pvi~~~~~~~----~e~i~~~~~G~~~~~~~~~~la~~i~~l~ 324 (351)
T cd03804 262 ARAFLFPAE--EDFGIVPVEAMA-----SGTPVIAYGKGGA----LETVIDGVTGILFEEQTVESLAAAVERFE 324 (351)
T ss_pred CCEEEECCc--CCCCchHHHHHH-----cCCCEEEeCCCCC----cceeeCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 566665433 333555566554 2568876543222 23345566788888999999888777654
No 441
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.03 E-value=86 Score=24.08 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
....++.|++.+....+-+..+|.+.+..|..+.+...-+... ....|++|.-..-|.
T Consensus 150 l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~---------------~~~ADIvI~Avgk~~ 207 (279)
T PRK14178 150 IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAE---------------LRQADILVSAAGKAG 207 (279)
T ss_pred CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHH---------------HhhCCEEEECCCccc
Confidence 3568999999999999999999998888888777655444322 135799998885443
No 442
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=41.02 E-value=1.1e+02 Score=21.95 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=42.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc-EEEEe-cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-CHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC-KVTTA-ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-TGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-~g~~~ 96 (153)
..++..+|-++......+..+...+. .+... .+..+ +. . ....+|+|++...+... +-..+
T Consensus 70 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~--------------~~~~fD~V~~~~~l~~~~~~~~~ 133 (231)
T TIGR02752 70 EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME-LP-F--------------DDNSFDYVTIGFGLRNVPDYMQV 133 (231)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc-CC-C--------------CCCCccEEEEecccccCCCHHHH
Confidence 45788899988887777766654443 22222 22111 11 1 13469999998655432 34556
Q ss_pred HHHHHhccCCCCCcEEEEe
Q 042079 97 LKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t 115 (153)
++.+.+.- .+...++++.
T Consensus 134 l~~~~~~L-k~gG~l~~~~ 151 (231)
T TIGR02752 134 LREMYRVV-KPGGKVVCLE 151 (231)
T ss_pred HHHHHHHc-CcCeEEEEEE
Confidence 66654422 2344455443
No 443
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=41.01 E-value=83 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=27.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGM 54 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~ 54 (153)
|+|+|-...+...+.+.|+..|+.+....+..
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~ 32 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSK 32 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHH
Confidence 57889988899999999999999888888653
No 444
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=40.99 E-value=1.4e+02 Score=22.59 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=44.2
Q ss_pred CcccEEEEeCCC----CC---CCHHHHHHHHHhccCCCCCcEEEEeCCC-C-----hhhHHHHHHhcCcc-cccCC----
Q 042079 77 TKVNLVITDYCM----PG---MTGYELLKKIKESSVMKEVPVVVVSSEN-I-----PTRINECLEEGAQM-FMLKP---- 138 (153)
Q Consensus 77 ~~~dlii~D~~~----~~---~~g~~~~~~lr~~~~~~~~pii~~t~~~-~-----~~~~~~a~~~ga~~-~l~KP---- 138 (153)
+..+++++.+.. |. .-.+..+..+++. ..+||++-+++. . ......|...|+++ ++-|-
T Consensus 159 Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~---~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 159 GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKE---THLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh---hCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 345799988622 21 1235566677753 368988634442 3 45556788999986 44443
Q ss_pred ---------CChhHHHHHHhhhc
Q 042079 139 ---------LKPSDVKKLTGHLI 152 (153)
Q Consensus 139 ---------~~~~~l~~~~~~~~ 152 (153)
++++++++++..+.
T Consensus 236 ~a~~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 236 KALSDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred ccCCcchhcCCHHHHHHHHHHHh
Confidence 56667777766543
No 445
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=40.91 E-value=1.4e+02 Score=21.66 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=47.2
Q ss_pred EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH
Q 042079 47 VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE 125 (153)
Q Consensus 47 v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 125 (153)
.-.+.+..|+.+... ...|++-+ .| ..-|.+.++.++.... +.+|++.+.+ -+.+...+
T Consensus 108 ~~G~~t~~E~~~A~~---------------~Gad~vk~---Fpa~~~G~~~l~~l~~~~~-~~ipvvaiGG-I~~~n~~~ 167 (206)
T PRK09140 108 MPGVATPTEAFAALR---------------AGAQALKL---FPASQLGPAGIKALRAVLP-PDVPVFAVGG-VTPENLAP 167 (206)
T ss_pred EcccCCHHHHHHHHH---------------cCCCEEEE---CCCCCCCHHHHHHHHhhcC-CCCeEEEECC-CCHHHHHH
Confidence 445778888766552 35678765 34 3357889999886331 2589887665 47788899
Q ss_pred HHHhcCccc
Q 042079 126 CLEEGAQMF 134 (153)
Q Consensus 126 a~~~ga~~~ 134 (153)
.++.|++.+
T Consensus 168 ~~~aGa~~v 176 (206)
T PRK09140 168 YLAAGAAGF 176 (206)
T ss_pred HHHCCCeEE
Confidence 999998775
No 446
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=40.79 E-value=72 Score=23.24 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=30.0
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHH-HHHhcCcccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINE-CLEEGAQMFM 135 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~-a~~~ga~~~l 135 (153)
+++++++++. ..+|+++..+-.+.+.+.+ +.+.|++..+
T Consensus 186 ~~~~~~i~~~---~~ipvia~GGi~s~~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 186 LELIKTVSDA---VSIPVIALGGAGSLDDLVEVALEAGASAVA 225 (232)
T ss_pred HHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 7778888764 3689988887778888888 6778888764
No 447
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=40.70 E-value=1.3e+02 Score=22.15 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=34.6
Q ss_pred cccEEEEeCCCCCCCHHHHH-------HHHHhccCCCC-CcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCMPGMTGYELL-------KKIKESSVMKE-VPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~-------~~lr~~~~~~~-~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..|.|++=..-|+..|..|+ +++|+...... -..|-+-+.-+.+.+..+.+.|++.|
T Consensus 132 ~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~ 196 (223)
T PRK08745 132 ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF 196 (223)
T ss_pred hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence 46766654456676666554 33333211111 13466777778888889999999855
No 448
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.65 E-value=66 Score=24.81 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
...++.|+.......+=+..+|.+.+..|+.+++...-+... ....|+++.-..-|.+-.-
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~---------------~~~ADIvIsAvGkp~~i~~ 214 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAV---------------TRRADVLVVAVGRPHLITP 214 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHH---------------HhhCCEEEEecCCcCccCH
Confidence 468999999999999999999998888888877655433322 1347999998877775443
No 449
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.34 E-value=99 Score=19.82 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEE-eCCCCCCCHHHHHHHHHhccCCCCCc
Q 042079 32 DRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVIT-DYCMPGMTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 32 ~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~-D~~~~~~~g~~~~~~lr~~~~~~~~p 110 (153)
....+...+...|..+....+.......+. .-.+-|++|+ ...=...+-.+.++..|+. .+|
T Consensus 14 ~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~-------------~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~----g~~ 76 (128)
T cd05014 14 IARKIAATLSSTGTPAFFLHPTEALHGDLG-------------MVTPGDVVIAISNSGETDELLNLLPHLKRR----GAP 76 (128)
T ss_pred HHHHHHHHhhcCCCceEEcccchhhccccC-------------cCCCCCEEEEEeCCCCCHHHHHHHHHHHHC----CCe
Confidence 345566666667777766655432221111 1123355543 3322233456667777663 579
Q ss_pred EEEEeCCCChhh
Q 042079 111 VVVVSSENIPTR 122 (153)
Q Consensus 111 ii~~t~~~~~~~ 122 (153)
+|.+|+..+...
T Consensus 77 vi~iT~~~~s~l 88 (128)
T cd05014 77 IIAITGNPNSTL 88 (128)
T ss_pred EEEEeCCCCCch
Confidence 999998655443
No 450
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=40.34 E-value=2.1e+02 Score=23.65 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=56.3
Q ss_pred CeEEEEeCC-H---HHHHHHHHHHHhc-Cc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC----
Q 042079 21 PHVLAVDDS-I---VDRKIVENLLKNS-AC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP---- 89 (153)
Q Consensus 21 ~~iLiidd~-~---~~~~~l~~~l~~~-~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~---- 89 (153)
..++++|.. . .....+..+-++. +. -+..+.+.+++..+.. ..+|.|.+.+.-.
T Consensus 241 vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~---------------aGad~i~vg~g~gs~~~ 305 (486)
T PRK05567 241 VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIE---------------AGADAVKVGIGPGSICT 305 (486)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHH---------------cCCCEEEECCCCCcccc
Confidence 457777753 1 2233333333333 22 2455667776666552 3467776543211
Q ss_pred -------CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 90 -------GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 90 -------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
+...++++..+++......+|+|.=.+-....++.+|+..||+...
T Consensus 306 ~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~ 358 (486)
T PRK05567 306 TRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVM 358 (486)
T ss_pred ceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEE
Confidence 0123455555544221235788776677789999999999998753
No 451
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=40.24 E-value=71 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=30.6
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
++.++.+++... .++|||....-.+.+.+.+++..|++..
T Consensus 230 ~~~v~~i~~~~~-~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQ-LDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcC-CCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 556777776421 2689998888888899999999998764
No 452
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=40.24 E-value=1.4e+02 Score=21.69 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=41.0
Q ss_pred CcccEEEEeCC--CCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYC--MPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~--~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
...+++.++.. .......++++++++.. ++|+++=-+-.+.+...++.+.|+|.++.
T Consensus 146 ~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~---~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 146 FGMKWVYLEAGSGASYPVNPETISLVKKAS---GIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred cCCCEEEEEcCCCCCCCCCHHHHHHHHHhh---CCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 35678877653 22223488999998753 67998777777888888888899987653
No 453
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=40.02 E-value=1.9e+02 Score=23.03 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+..+++.+. ..+|+|.. ... ...+....|..+++..|-+.+++.+.+.+++
T Consensus 318 p~~llEAma-----~G~PVI~t-~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~ 368 (406)
T PRK15427 318 PVALMEAMA-----VGIPVVST-LHS---GIPELVEADKSGWLVPENDAQALAQRLAAFS 368 (406)
T ss_pred cHHHHHHHh-----CCCCEEEe-CCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 345566554 25688743 222 2345667888999999999999988887764
No 454
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=39.99 E-value=94 Score=26.72 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=29.2
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCC
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENI 119 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~ 119 (153)
.++||++++ ++.|+.+ +.+.+++|+.+ .++|+|-+.++.-
T Consensus 308 ~~kPD~vIl-ID~PgFN-lrLAK~lkk~G--i~ipviyYVsPqV 347 (608)
T PRK01021 308 KTNPRTVIC-IDFPDFH-FLLIKKLRKRG--YKGKIVHYVCPSI 347 (608)
T ss_pred hcCCCEEEE-eCCCCCC-HHHHHHHHhcC--CCCCEEEEECccc
Confidence 457898876 5568888 56889998754 3468998887753
No 455
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=39.94 E-value=1.7e+02 Score=22.37 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=43.5
Q ss_pred CcccEEEEeCCCCCC--CHHH----HHHHHHhccCCCCCcEEEEeCCCCh----hhHHHHHHhcCccc-ccCCCChhHHH
Q 042079 77 TKVNLVITDYCMPGM--TGYE----LLKKIKESSVMKEVPVVVVSSENIP----TRINECLEEGAQMF-MLKPLKPSDVK 145 (153)
Q Consensus 77 ~~~dlii~D~~~~~~--~g~~----~~~~lr~~~~~~~~pii~~t~~~~~----~~~~~a~~~ga~~~-l~KP~~~~~l~ 145 (153)
..+|.|++|+.-... +--+ +...|+... .....+++=.+..+. ..+..+...|++.+ +.|--+.+++.
T Consensus 23 ~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~-~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~givlPKv~s~~~v~ 101 (288)
T TIGR01588 23 YGADSVMFDLEDAVSLAEKDSARLLVYEALQTPD-YGDTETVVRINGLDTPFGLADIKAVVKAGVDVVRLPKTDTAEDIH 101 (288)
T ss_pred cCCCEEEEecccCCCcchHHHHHHHHHHHHhccC-CCCCEEEEEECCCCChhHHHHHHHHHhcCCCEEEeCCCCCHHHHH
Confidence 468999999876543 3333 344444322 123345544544333 66777888888775 67777777777
Q ss_pred HHHh
Q 042079 146 KLTG 149 (153)
Q Consensus 146 ~~~~ 149 (153)
.+..
T Consensus 102 ~~~~ 105 (288)
T TIGR01588 102 ELEK 105 (288)
T ss_pred HHHH
Confidence 6543
No 456
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.73 E-value=69 Score=24.66 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
...+++|+.......+=+..+|.+.+..|+.+++...-+... ....|+++.-+.-|..
T Consensus 158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~---------------~~~ADIvi~avG~p~~ 215 (285)
T PRK10792 158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHH---------------VRNADLLVVAVGKPGF 215 (285)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHH---------------HhhCCEEEEcCCCccc
Confidence 468999999999999999999998898888877654433322 2457999998877765
No 457
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=39.70 E-value=68 Score=24.71 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
...++.||.......+=+..+|.+.++.|..+++...-+... ....|+++.-+.-|.+-
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~---------------~k~ADIvv~AvG~p~~i 213 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASI---------------TKNADIVVVAVGKPHFI 213 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHH---------------hhhCCEEEEecCCcccc
Confidence 457899999999999999999999999999888776444433 23579999988877753
No 458
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=39.49 E-value=1.6e+02 Score=22.05 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=38.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC-----cEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC-
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSA-----CKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT- 92 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~-----~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~- 92 (153)
..++.++|-++...+..+..+...+ -.+. ...++.+.++.. ..+||+||+|...|...
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---------------~~~yDvIi~D~~~~~~~~ 160 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---------------ENTFDVIIVDSTDPVGPA 160 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---------------CCCccEEEEeCCCCCCcc
Confidence 3467777888777777776654321 1121 223443333321 35799999998654322
Q ss_pred ----HHHHHHHHHh
Q 042079 93 ----GYELLKKIKE 102 (153)
Q Consensus 93 ----g~~~~~~lr~ 102 (153)
..++++.+++
T Consensus 161 ~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 161 ETLFTKEFYELLKK 174 (270)
T ss_pred cchhHHHHHHHHHH
Confidence 3456666664
No 459
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=39.19 E-value=1.4e+02 Score=22.04 Aligned_cols=58 Identities=29% Similarity=0.346 Sum_probs=41.0
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCCh-----hhHHHHHHhcCcccccCCC
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIP-----TRINECLEEGAQMFMLKPL 139 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~-----~~~~~a~~~ga~~~l~KP~ 139 (153)
...|++|.=...|+. .+++.+.+++. .++.|++...... +...++.+.|..-+..||+
T Consensus 50 ~~~Dl~I~y~lHPDl-~~~l~~~~~e~----g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~ 112 (217)
T PF02593_consen 50 PEADLLIAYGLHPDL-TYELPEIAKEA----GVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPF 112 (217)
T ss_pred CCCCEEEEeccCchh-HHHHHHHHHHc----CCCEEEEecCCCccchHHHHHHHHHhcCceeecCccc
Confidence 457888875555664 47888888863 4566767666555 6667778888888888874
No 460
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.13 E-value=1.2e+02 Score=25.31 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=41.2
Q ss_pred CCcccEEEEeC-CCCCCCHHHHH-HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 76 GTKVNLVITDY-CMPGMTGYELL-KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 76 ~~~~dlii~D~-~~~~~~g~~~~-~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
...+.++|+|- ++-....++.+ +.|.+ . .+.+.+|+.+. ........+..-+.-|-.+|++..++...+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-P-p~~v~fIlatt--e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ 186 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEE-P-APHVKFILATT--EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVD 186 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhC-C-CCCeEEEEEeC--ChHHHHHHHHHhheeeecccccHHHHHHHHHH
Confidence 34678999874 44333334333 33333 2 13455665553 33334455666667787889999988876655
No 461
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=39.09 E-value=1.7e+02 Score=22.15 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=48.3
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHH--hcC--------cccccCCCChhHHH
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLE--EGA--------QMFMLKPLKPSDVK 145 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~--~ga--------~~~l~KP~~~~~l~ 145 (153)
..+|.+++-=...+. ...+.++++|+.. + .|++ +.+..+.+.+.+.++ .|+ ++....|++++.++
T Consensus 171 ~~aDaviVtG~~TG~~~~~~~l~~vr~~~--~-~PVl-vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv~ 246 (254)
T PF03437_consen 171 GGADAVIVTGKATGEPPDPEKLKRVREAV--P-VPVL-VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERVR 246 (254)
T ss_pred cCCCEEEECCcccCCCCCHHHHHHHHhcC--C-CCEE-EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHHH
Confidence 457888876554432 3567778888743 3 7887 555567777777765 332 34445599999999
Q ss_pred HHHhhhc
Q 042079 146 KLTGHLI 152 (153)
Q Consensus 146 ~~~~~~~ 152 (153)
+.+..+.
T Consensus 247 ~fm~~v~ 253 (254)
T PF03437_consen 247 RFMEAVK 253 (254)
T ss_pred HHHHHhh
Confidence 9887653
No 462
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=39.06 E-value=1.1e+02 Score=21.83 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=24.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCHH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENGM 54 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~ 54 (153)
|+|||-...+...+...|++.|+.+....+..
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~ 33 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPE 33 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEcChH
Confidence 78999665556677778888998888876644
No 463
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.05 E-value=1.5e+02 Score=22.78 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=43.1
Q ss_pred ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-------CCCCHHHHHHHHHhccCCCCCcEEEEeCCC-Chh
Q 042079 50 AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-------PGMTGYELLKKIKESSVMKEVPVVVVSSEN-IPT 121 (153)
Q Consensus 50 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-------~~~~g~~~~~~lr~~~~~~~~pii~~t~~~-~~~ 121 (153)
..+.+++.+++. .+.+|.+=+.+.- |..+ ++.++.|++. ..+|+++=.++. ..+
T Consensus 152 ~T~pe~a~~Fv~--------------~TgvD~LAvaiGt~HG~Y~~p~l~-~~~l~~I~~~---~~vPLVlHGgSG~~~e 213 (283)
T PRK07998 152 KTEPEKVKDFVE--------------RTGCDMLAVSIGNVHGLEDIPRID-IPLLKRIAEV---SPVPLVIHGGSGIPPE 213 (283)
T ss_pred cCCHHHHHHHHH--------------HhCcCeeehhccccccCCCCCCcC-HHHHHHHHhh---CCCCEEEeCCCCCCHH
Confidence 356667777663 3567877665522 4433 6888888774 378988766554 456
Q ss_pred hHHHHHHhcCcc
Q 042079 122 RINECLEEGAQM 133 (153)
Q Consensus 122 ~~~~a~~~ga~~ 133 (153)
...+|.+.|+.-
T Consensus 214 ~~~~ai~~Gi~K 225 (283)
T PRK07998 214 ILRSFVNYKVAK 225 (283)
T ss_pred HHHHHHHcCCcE
Confidence 678888888754
No 464
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=38.98 E-value=1.7e+02 Score=22.12 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC-CCCCC-HHHHHHHHHhccCCCCCc
Q 042079 34 KIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC-MPGMT-GYELLKKIKESSVMKEVP 110 (153)
Q Consensus 34 ~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~-~~~~~-g~~~~~~lr~~~~~~~~p 110 (153)
..+-..-...|.+ +..+++..|.-..+. ...++|-++-. +.++. -++...+|...-+ .++.
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~---------------~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip-~~~~ 211 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALE---------------AGADIIGINNRDLKTFEVDLNRTEELAPLIP-KDVI 211 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHH---------------TT-SEEEEESBCTTTCCBHTHHHHHHHCHSH-TTSE
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHH---------------cCCCEEEEeCccccCcccChHHHHHHHhhCc-ccee
Confidence 4444555567876 457999998766652 24678877643 33332 2344445544221 3455
Q ss_pred EEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 111 VVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
+|.-++-.+.+++......|++++|.-
T Consensus 212 ~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 212 VISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp EEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred EEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 666666678888889999999998753
No 465
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=38.91 E-value=1.6e+02 Score=21.73 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCcccEEEEeCCCCC-CC--HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 76 GTKVNLVITDYCMPG-MT--GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 76 ~~~~dlii~D~~~~~-~~--g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
...+++|++|+..=+ ++ -.+++..+.... .-|+++=.+-...+....+...|+.+.|.
T Consensus 149 ~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s---~~pVllGGGV~g~Edlel~~~~Gv~gvLv 209 (229)
T COG1411 149 RRDPGLIVLDIGAVGTKSGPDYELLTKVLELS---EHPVLLGGGVGGMEDLELLLGMGVSGVLV 209 (229)
T ss_pred cCCCCeEEEEccccccccCCCHHHHHHHHHhc---cCceeecCCcCcHHHHHHHhcCCCceeee
Confidence 346899999996643 23 367888877643 55777666666777788888899888764
No 466
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.72 E-value=1.4e+02 Score=21.21 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
|+|+|-.-.+...+.+.|++.|+.+....+.
T Consensus 2 i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~ 32 (205)
T PRK13141 2 IAIIDYGMGNLRSVEKALERLGAEAVITSDP 32 (205)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCeEEEECCH
Confidence 7888888888888999999999988887764
No 467
>PRK00536 speE spermidine synthase; Provisional
Probab=38.71 E-value=1.7e+02 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.307 Sum_probs=14.0
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKE 102 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~ 102 (153)
.+||+||+|.. ++ .++.+.+++
T Consensus 138 ~~fDVIIvDs~-~~---~~fy~~~~~ 159 (262)
T PRK00536 138 KKYDLIICLQE-PD---IHKIDGLKR 159 (262)
T ss_pred CcCCEEEEcCC-CC---hHHHHHHHH
Confidence 57999999964 23 344455544
No 468
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=38.57 E-value=1.4e+02 Score=22.60 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=3.9
Q ss_pred ccEEEEe
Q 042079 79 VNLVITD 85 (153)
Q Consensus 79 ~dlii~D 85 (153)
+|+||+|
T Consensus 273 ~d~vliD 279 (282)
T TIGR03499 273 KDLILID 279 (282)
T ss_pred CCEEEEe
Confidence 4555555
No 469
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=38.56 E-value=1.4e+02 Score=21.33 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCcEEEEecCH---HHHH-HHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 31 VDRKIVENLLKNSACKVTTAENG---MRAL-EFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 31 ~~~~~l~~~l~~~~~~v~~~~~~---~~a~-~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
...++++.+-+..+..+..+.+. .+.+ +.+... ....+|+||+|.
T Consensus 43 ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~-----------~~~~~D~vlIDT 91 (196)
T PF00448_consen 43 GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF-----------RKKGYDLVLIDT 91 (196)
T ss_dssp HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH-----------HHTTSSEEEEEE
T ss_pred cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH-----------hhcCCCEEEEec
Confidence 45577777777788777766633 2222 222110 124589999997
No 470
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=38.53 E-value=1.8e+02 Score=22.35 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE-EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH--HH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK-VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG--YE 95 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~-v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g--~~ 95 (153)
..++.-+|-++...+..+.-.+..+.. +. ...+..+..... ...||+|++| .| ..| -+
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~---------------~~~~D~Vv~d--PP-r~G~~~~ 256 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ---------------GEVPDLVLVN--PP-RRGIGKE 256 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc---------------CCCCeEEEEC--CC-CCCccHH
Confidence 357999999998888877777665542 33 234443332211 2358999999 33 333 46
Q ss_pred HHHHHHhc
Q 042079 96 LLKKIKES 103 (153)
Q Consensus 96 ~~~~lr~~ 103 (153)
+++.|...
T Consensus 257 ~~~~l~~~ 264 (315)
T PRK03522 257 LCDYLSQM 264 (315)
T ss_pred HHHHHHHc
Confidence 66777653
No 471
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.26 E-value=2.3e+02 Score=23.36 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=34.8
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 20 PPHVLAVDDSIV---DRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 20 ~~~iLiidd~~~---~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
..++.+++-|.. ...++..+-+..++.+..+.+..+....+.... ....+|+||+|.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk----------~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK----------EEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH----------hccCCCEEEEeC
Confidence 356778887764 345555555566777776777666544442110 112589999996
No 472
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.13 E-value=82 Score=18.26 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=26.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
.-.+-|+-|++.....+..+.+..|+.+.....
T Consensus 26 G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 26 GDTLLVLATDPSTTRDIPKFCTFLGHELLAQET 58 (69)
T ss_pred CCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEE
Confidence 456777778888888999999999998876543
No 473
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.06 E-value=81 Score=23.14 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh-cCccccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE-GAQMFML 136 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~-ga~~~l~ 136 (153)
.+++++++++. ..+|+++...-.+.+.+.++++. |++..+.
T Consensus 181 ~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 181 DLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 47788888764 36899888877788899999887 8876543
No 474
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.02 E-value=1.2e+02 Score=25.67 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=40.6
Q ss_pred CCcccEEEEeC-CCCCCCHHH-HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 76 GTKVNLVITDY-CMPGMTGYE-LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 76 ~~~~dlii~D~-~~~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
...+.++|+|- ++-....+. +++.|-+ . ...+.+|++|. ....+...+..-+.-|-.+|++..++...+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~naLLk~LEe-p-p~~~~fIl~t~--~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAFNALLKTLEE-P-PPHVKFIFATT--EPHKVPITILSRCQRFDFRRIPLQKIVDRLRY 189 (576)
T ss_pred cCCceEEEEEChhhCCHHHHHHHHHHHHc-C-CCCeEEEEEeC--ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHH
Confidence 34678898874 333333333 3334433 2 23566666664 33445555555566666788898888766554
No 475
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=38.00 E-value=1.6e+02 Score=21.51 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=39.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|+++.-... +.-|..+++.+.. .+|+|........ .+....+..+++.+|.+.+++.+.+.+++
T Consensus 253 ad~~i~ps~~-e~~~~~~~Ea~a~-----G~Pvi~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll 317 (348)
T cd03820 253 ASIFVLTSRF-EGFPMVLLEAMAF-----GLPVISFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLM 317 (348)
T ss_pred CCEEEeCccc-cccCHHHHHHHHc-----CCCEEEecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHH
Confidence 5676654333 2235666666653 5687643322222 23445666788999999999988777654
No 476
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=37.96 E-value=1.7e+02 Score=21.94 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=39.9
Q ss_pred CeEEEEeCC------HHHHHHHHHHHHhcCcEEEEecCHHHHH-HHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 21 PHVLAVDDS------IVDRKIVENLLKNSACKVTTAENGMRAL-EFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 21 ~~iLiidd~------~~~~~~l~~~l~~~~~~v~~~~~~~~a~-~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
++||++... ......+...|.+.|++|.........+ ..+ ...++|+|.+-......-.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~--------------~~~~~diih~~~~~~~~~~ 66 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKI--------------EIINADIVHLHWIHGGFLS 66 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhCh--------------hcccCCEEEEEccccCccC
Confidence 356666544 2345556667777887766544333222 222 2467999987653333333
Q ss_pred HHHHHHHHhccCCCCCcEEEE
Q 042079 94 YELLKKIKESSVMKEVPVVVV 114 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~ 114 (153)
...+.++. ..+|+|+.
T Consensus 67 ~~~~~~~~-----~~~~~v~~ 82 (365)
T cd03825 67 IEDLSKLL-----DRKPVVWT 82 (365)
T ss_pred HHHHHHHH-----cCCCEEEE
Confidence 34444432 24566644
No 477
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.95 E-value=80 Score=18.05 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEE
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTT 49 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~ 49 (153)
++-.+.|+-|++.....+..++++.|+.+..
T Consensus 24 ~g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~ 54 (67)
T cd03421 24 AGGEIEVLVDNEVAKENVSRFAESRGYEVSV 54 (67)
T ss_pred CCCEEEEEEcChhHHHHHHHHHHHcCCEEEE
Confidence 3446777788888888999999999998843
No 478
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=37.94 E-value=1.7e+02 Score=21.91 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHhccC----------CCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 88 MPGMTGYELLKKIKESSV----------MKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 88 ~~~~~g~~~~~~lr~~~~----------~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
-+.++.-++++++++... ...+.-+.+.+........+|.+.|+|.|++.-++......+.
T Consensus 137 ~~~~~l~~l~~~i~~~l~~~~~~~~~~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~~~~~a~ 207 (250)
T COG0327 137 KEPTTLEELAERIKAKLGRPPLRVVKDGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTAHDAR 207 (250)
T ss_pred CCCCCHHHHHHHHHHHcCCCCEEEccCccccCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHHHHHHHH
Confidence 345677888888875431 1234444454444566677789999999999998877765543
No 479
>PRK06444 prephenate dehydrogenase; Provisional
Probab=37.80 E-value=93 Score=22.44 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=24.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEE
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVT 48 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~ 48 (153)
+++.||...-...+.+..++++.|+.|.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 4789999988899999999999888764
No 480
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=37.69 E-value=1.4e+02 Score=20.87 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=24.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
|+|||....+...+...|++.|+.+....
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~ 29 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVP 29 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEe
Confidence 58999999999999999999998776653
No 481
>PLN02778 3,5-epimerase/4-reductase
Probab=37.64 E-value=1.8e+02 Score=22.04 Aligned_cols=32 Identities=6% Similarity=-0.027 Sum_probs=26.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEE
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTT 49 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~ 49 (153)
.+.++|||....-.....+...|...|++|..
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 45578999999999999988888888888753
No 482
>PLN02979 glycolate oxidase
Probab=37.61 E-value=74 Score=25.47 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++-+++||+.. ++|+| +-.-.+.+....+.+.|++.++.
T Consensus 212 W~dl~wlr~~~---~~Pvi-vKgV~~~~dA~~a~~~Gvd~I~V 250 (366)
T PLN02979 212 WKDVQWLQTIT---KLPIL-VKGVLTGEDARIAIQAGAAGIIV 250 (366)
T ss_pred HHHHHHHHhcc---CCCEE-eecCCCHHHHHHHHhcCCCEEEE
No 483
>PRK01581 speE spermidine synthase; Validated
Probab=37.56 E-value=2.2e+02 Score=22.96 Aligned_cols=69 Identities=22% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCeEEEEeCCHHHHHHHHHH--HH---hc---CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENL--LK---NS---ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~--l~---~~---~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
..+|.+||-++...+..+.. |. +. +-.+. ...++.+.+... ...||+||+|+..|.
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---------------~~~YDVIIvDl~DP~ 238 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---------------SSLYDVIIIDFPDPA 238 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---------------CCCccEEEEcCCCcc
Confidence 45788888888877766642 11 11 11232 345555444322 356999999975543
Q ss_pred C------CHHHHHHHHHhc
Q 042079 91 M------TGYELLKKIKES 103 (153)
Q Consensus 91 ~------~g~~~~~~lr~~ 103 (153)
. -..+|++.+++.
T Consensus 239 ~~~~~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 239 TELLSTLYTSELFARIATF 257 (374)
T ss_pred ccchhhhhHHHHHHHHHHh
Confidence 2 234577777764
No 484
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=37.48 E-value=2.2e+02 Score=22.97 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-----CCCCHHHHHHHHHhc
Q 042079 31 VDRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-----PGMTGYELLKKIKES 103 (153)
Q Consensus 31 ~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-----~~~~g~~~~~~lr~~ 103 (153)
...+.++.+.+..+ +.+..+-+.+++.... ...+|.|++.-+= .....++.+..+++.
T Consensus 240 ~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~---------------~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~ 304 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLKGILHPDDARRAV---------------EAGVDGVVVSNHGGRQVDGSIAALDALPEIVEA 304 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEecCCCHHHHHHHH---------------HCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHH
Confidence 34456666655533 4455577888877766 2468888876421 122456777777653
Q ss_pred cCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCC
Q 042079 104 SVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPL 139 (153)
Q Consensus 104 ~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~ 139 (153)
. ..++|||+-.+-....++.+|+..||+.. +-+|+
T Consensus 305 ~-~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~ 340 (383)
T cd03332 305 V-GDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPY 340 (383)
T ss_pred h-cCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHH
Confidence 2 13689988777778899999999999885 44454
No 485
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=37.37 E-value=1.5e+02 Score=21.91 Aligned_cols=58 Identities=28% Similarity=0.326 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhccCCCCCcE----------EEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 91 MTGYELLKKIKESSVMKEVPV----------VVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 91 ~~g~~~~~~lr~~~~~~~~pi----------i~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
++-.++++.+++....+.+.+ |.+.+....+...++.+.|+|-|++--++........
T Consensus 142 ~s~~el~~~vk~~l~~~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~ 209 (241)
T PF01784_consen 142 MSLEELAERVKEKLGLPGVRVVGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAK 209 (241)
T ss_dssp EEHHHHHHHHHHHTTSS-EEEESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCcEEecCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHH
Confidence 677888988876543223332 3455555567888999999999999988877776554
No 486
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=37.23 E-value=2.1e+02 Score=22.70 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=50.9
Q ss_pred HHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEE
Q 042079 35 IVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVV 114 (153)
Q Consensus 35 ~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~ 114 (153)
.+..+-++.|..+.+..-...++..+. ..++-..-+.....+-+.+++.+-+.. -|+|+-
T Consensus 94 ~Lke~a~~~Gi~~~SSPfd~~svd~l~----------------~~~~~ayKIaS~E~~~~plik~iA~~~----kPiIlS 153 (347)
T COG2089 94 QLKEYARKRGIIFFSSPFDLTAVDLLE----------------SLNPPAYKIASGEINDLPLIKYIAKKG----KPIILS 153 (347)
T ss_pred HHHHHHHHcCeEEEecCCCHHHHHHHH----------------hcCCCeEEecCccccChHHHHHHHhcC----CCEEEE
Confidence 344455566776666666666677662 233444455566667788999887643 389988
Q ss_pred eCCCChhhHHHH----HHhcCccc
Q 042079 115 SSENIPTRINEC----LEEGAQMF 134 (153)
Q Consensus 115 t~~~~~~~~~~a----~~~ga~~~ 134 (153)
|+-.+-+.+.+| .+.|.-++
T Consensus 154 TGma~~~ei~~av~~~r~~g~~~i 177 (347)
T COG2089 154 TGMATIEEIEEAVAILRENGNPDI 177 (347)
T ss_pred cccccHHHHHHHHHHHHhcCCCCe
Confidence 887776666555 45666543
No 487
>PRK01362 putative translaldolase; Provisional
Probab=37.22 E-value=1.7e+02 Score=21.50 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHhccCCCC-CcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 88 MPGMTGYELLKKIKESSVMKE-VPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 88 ~~~~~g~~~~~~lr~~~~~~~-~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
-.+.+|+++++.+.+...... -+-|+.++-.+.....++...|++.+-
T Consensus 135 d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iT 183 (214)
T PRK01362 135 DIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIAT 183 (214)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEe
Confidence 346689998888754321111 244556666788888899999999553
No 488
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.12 E-value=1.8e+02 Score=22.24 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=38.0
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++.+|+.. +.-.+|-++.+ +.+...++.+.|+|-....++.++.++++...
T Consensus 175 ~~~v~~aR~~~--~~~~~Igvsv~-tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~ 228 (277)
T PRK08072 175 TKAVTSVREKL--GHMVKIEVETE-TEEQVREAVAAGADIIMFDNRTPDEIREFVKL 228 (277)
T ss_pred HHHHHHHHHhC--CCCCEEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 34555666543 22345666664 56777888999999888888999999887754
No 489
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=36.95 E-value=1.5e+02 Score=20.87 Aligned_cols=57 Identities=23% Similarity=0.224 Sum_probs=33.6
Q ss_pred ccEEEEeCCCCCCC-------HHHHHHHHHhccC--CCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 79 VNLVITDYCMPGMT-------GYELLKKIKESSV--MKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 79 ~dlii~D~~~~~~~-------g~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
+|.+.++...++.. +.+.++++++... .+++|+++.. .-+.+...++.+.|++.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G-GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG-GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 57787765444432 2344555544320 1246776544 44568888899999987643
No 490
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=36.92 E-value=88 Score=20.97 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCcEE--EEeCCCChhhHHHHHHhcCcccccC
Q 042079 107 KEVPVV--VVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 107 ~~~pii--~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
+++.|| +-++.-+++.+.+|++.|+|+.++-
T Consensus 28 ~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~ 60 (132)
T COG1908 28 PNVRIIRVMCSGRVNPEFVLKALRKGADGVLVA 60 (132)
T ss_pred CceEEEEeeccCccCHHHHHHHHHcCCCeEEEe
Confidence 445444 4466778999999999999987754
No 491
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=36.61 E-value=1.7e+02 Score=21.57 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHhcc--CCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 89 PGMTGYELLKKIKESS--VMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 89 ~~~~g~~~~~~lr~~~--~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
.+.||.++++.++... ...++ -|+.++-.+.....++...|++.+-..|
T Consensus 140 ~g~D~~~~i~~i~~~~~~~~~~t-kILaAS~r~~~~v~~a~~~G~d~vTvp~ 190 (222)
T PRK12656 140 LNIDSNAVIGQLAEAIDRENSDS-KILAASFKNVAQVNKAFALGAQAVTAGP 190 (222)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCC-EEEEEecCCHHHHHHHHHcCCCEEecCH
Confidence 4568888887764321 11234 4556666788888999999998764433
No 492
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.32 E-value=1.2e+02 Score=22.28 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=36.3
Q ss_pred cEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 80 NLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 80 dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+|+.|+.--++ .|++ .+.+.. .++|+|+-.+-.+.++..++.+.|+++.+
T Consensus 158 ~ii~t~i~~dGt~~G~d---~l~~~~--~~~pviasGGv~~~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 158 RFIYTSIERDGTLTGIE---EIERFW--GDEEFIYAGGVSSAEDVKKLAEIGFSGVI 209 (228)
T ss_pred EEEEEeccchhcccCHH---HHHHhc--CCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 578888866554 6766 333321 36899888777888889898888988653
No 493
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=36.31 E-value=81 Score=24.00 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+..++++++... .++|||...+-.+.++..+.+.+||+..
T Consensus 230 aL~~V~~~~~~~~-~~i~Iig~GGI~s~~da~e~l~aGA~~V 270 (295)
T PF01180_consen 230 ALRWVRELRKALG-QDIPIIGVGGIHSGEDAIEFLMAGASAV 270 (295)
T ss_dssp HHHHHHHHHHHTT-TSSEEEEESS--SHHHHHHHHHHTESEE
T ss_pred HHHHHHHHHhccc-cceEEEEeCCcCCHHHHHHHHHhCCCHh
Confidence 3556666776432 4699999999889999999999999764
No 494
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=36.26 E-value=1.3e+02 Score=23.81 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred CCcccEEEEeC--CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 76 GTKVNLVITDY--CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 76 ~~~~dlii~D~--~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
...+.++|+|- .|.....-.+++.|-+ + .+++.+|++|. ..+.+...+..-+..+-.+|.+.+++.+.+.
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-P-p~~t~fiL~t~--~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEE-P-PPGTVFLLVSA--RIDRLLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcC-C-CcCcEEEEEEC--ChhhCcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 45677888873 3333334556666654 3 24555666664 3444555566677788788888888876554
No 495
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=36.21 E-value=80 Score=25.29 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
++-+++||+.. ++||| +-.-.+.+....+.+.|++.++..
T Consensus 213 W~di~wlr~~~---~~Pii-vKgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 213 WKDVQWLQTIT---KLPIL-VKGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred HHHHHHHHhcc---CCCEE-eecCCCHHHHHHHHHcCCCEEEEC
Confidence 56788999753 68887 555567888999999999987654
No 496
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=36.03 E-value=1.5e+02 Score=23.96 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=41.0
Q ss_pred CCcccEEEEeC--CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 76 GTKVNLVITDY--CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 76 ~~~~dlii~D~--~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
..++.++|+|- .|.....-.+++.|.+ .. +.+.+|+.|.. .......+..-+..+-.+|.+.+++...+.
T Consensus 115 ~~~~kViiIDead~m~~~aanaLLk~LEe-p~-~~~~fIL~a~~--~~~llpTIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERAANALLKAVEE-PP-PRTVWLLCAPS--PEDVLPTIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred cCCcEEEEEechhhcCHHHHHHHHHHhhc-CC-CCCeEEEEECC--hHHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence 34567888873 2322222335565543 21 34445555543 455566677777777778888888876654
No 497
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=36.03 E-value=1.6e+02 Score=20.86 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=25.9
Q ss_pred CCcccEEEEeC-----CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH
Q 042079 76 GTKVNLVITDY-----CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE 125 (153)
Q Consensus 76 ~~~~dlii~D~-----~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 125 (153)
+..+|+||+|- ...-.+--++++.|+.++ +.+ =+++|+...+..+.+
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp--~~~-evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRP--ESL-EVVLTGRNAPEELIE 145 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS---TT--EEEEE-SS--HHHHH
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCC--CCe-EEEEECCCCCHHHHH
Confidence 56799999994 333356677788887643 334 456888776665554
No 498
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.02 E-value=3.2e+02 Score=24.39 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=34.6
Q ss_pred CeEEEEeCCHH---HHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 21 PHVLAVDDSIV---DRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 21 ~~iLiidd~~~---~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
.+|.++.-|.. ..++++.+-+..+..+..+.+..+..+.+.. -..+|+||+|.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-------------~~~~D~VLIDT 271 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-------------LGDKHLVLIDT 271 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-------------hcCCCEEEEeC
Confidence 46777777653 3356666666677766667777776555531 23579999996
No 499
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.91 E-value=2.6e+02 Score=23.40 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=36.6
Q ss_pred CcccEEEEeCCCCCCC--HHHHHHHHHhccCCCCCcEEEEeC-CCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPGMT--GYELLKKIKESSVMKEVPVVVVSS-ENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~--g~~~~~~lr~~~~~~~~pii~~t~-~~~~~~~~~a~~~ga~~~l 135 (153)
..+|+|.+| .-++.+ ..+.++++|+.. + .++.+.++ -.+.+....+.+.||+...
T Consensus 253 aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~--~-~~~~V~aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 253 AGADVLCID-SSEGYSEWQKRTLDWIREKY--G-DSVKVGAGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred hCCCeEeec-CcccccHHHHHHHHHHHHhC--C-CCceEEeccccCHHHHHHHHHcCCCEEE
Confidence 458999999 444443 478888888754 2 22333333 3467788889999998753
No 500
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=35.80 E-value=2.3e+02 Score=22.80 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=42.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC-HHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT-GYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~-g~~~~~ 98 (153)
..+|+++|..-. ..+.+.|++.|+.+..+...... +.+ ....||.||+--...+.. -...++
T Consensus 192 ~~~I~viD~g~k--~ni~~~L~~~G~~v~vvp~~~~~-~~i--------------~~~~~dgIilSgGPg~p~~~~~~i~ 254 (382)
T CHL00197 192 QLKIIVIDFGVK--YNILRRLKSFGCSITVVPATSPY-QDI--------------LSYQPDGILLSNGPGDPSAIHYGIK 254 (382)
T ss_pred CCEEEEEECCcH--HHHHHHHHHCCCeEEEEcCCCCH-HHH--------------hccCCCEEEEcCCCCChhHHHHHHH
Confidence 468999999533 44777777789887776543221 212 123588888753222111 112222
Q ss_pred HHHhccCCCCCcEEEEeC
Q 042079 99 KIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~ 116 (153)
.+++.. ....|++-+.-
T Consensus 255 ~i~~~~-~~~~PilGICl 271 (382)
T CHL00197 255 TVKKLL-KYNIPIFGICM 271 (382)
T ss_pred HHHHHH-hCCCCEEEEcH
Confidence 333211 12578887763
Done!