Query 042079
Match_columns 153
No_of_seqs 122 out of 1044
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 03:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 1.2E-28 4E-33 167.0 15.1 121 19-153 11-132 (134)
2 3gl9_A Response regulator; bet 99.9 1.7E-24 5.7E-29 143.1 17.0 118 21-152 3-120 (122)
3 3t6k_A Response regulator rece 99.9 8.9E-24 3E-28 142.1 15.2 119 19-151 3-121 (136)
4 2lpm_A Two-component response 99.9 1.1E-25 3.8E-30 150.2 4.0 113 19-152 7-120 (123)
5 3h1g_A Chemotaxis protein CHEY 99.9 6.7E-23 2.3E-27 136.4 15.6 120 20-152 5-125 (129)
6 3f6p_A Transcriptional regulat 99.9 4.9E-23 1.7E-27 135.5 14.8 116 20-152 2-117 (120)
7 3m6m_D Sensory/regulatory prot 99.9 8.9E-23 3E-27 138.4 15.3 121 18-152 12-134 (143)
8 2r25_B Osmosensing histidine p 99.9 1.4E-22 4.8E-27 135.7 15.3 123 20-152 2-125 (133)
9 3rqi_A Response regulator prot 99.9 4.8E-23 1.7E-27 145.3 13.1 118 18-151 5-122 (184)
10 1dbw_A Transcriptional regulat 99.9 4.4E-22 1.5E-26 131.6 16.9 117 19-151 2-118 (126)
11 3gt7_A Sensor protein; structu 99.9 4.5E-22 1.5E-26 136.3 17.3 119 19-151 6-124 (154)
12 3eod_A Protein HNR; response r 99.9 4.2E-22 1.4E-26 132.2 15.8 119 18-152 5-124 (130)
13 1srr_A SPO0F, sporulation resp 99.9 3.9E-22 1.4E-26 131.4 14.8 117 20-152 3-119 (124)
14 1jbe_A Chemotaxis protein CHEY 99.9 1.4E-21 4.6E-26 129.3 16.5 119 19-151 3-122 (128)
15 3lua_A Response regulator rece 99.9 3.7E-22 1.3E-26 134.2 13.6 120 19-152 3-125 (140)
16 3hv2_A Response regulator/HD d 99.9 1.2E-21 4.1E-26 133.8 16.0 119 18-152 12-131 (153)
17 3crn_A Response regulator rece 99.9 7.5E-22 2.5E-26 131.7 14.6 116 20-151 3-118 (132)
18 3kto_A Response regulator rece 99.9 3.5E-22 1.2E-26 134.0 12.9 118 19-152 5-124 (136)
19 3snk_A Response regulator CHEY 99.9 7E-23 2.4E-27 137.2 9.2 118 19-152 13-131 (135)
20 1tmy_A CHEY protein, TMY; chem 99.9 7.3E-22 2.5E-26 129.3 13.9 117 20-152 2-119 (120)
21 1mb3_A Cell division response 99.9 6.1E-22 2.1E-26 130.2 13.4 118 21-152 2-119 (124)
22 1i3c_A Response regulator RCP1 99.9 2.3E-21 8E-26 131.9 16.7 126 19-151 7-134 (149)
23 1p6q_A CHEY2; chemotaxis, sign 99.9 1E-21 3.4E-26 130.1 14.2 118 20-151 6-124 (129)
24 3i42_A Response regulator rece 99.9 4.7E-22 1.6E-26 131.5 12.5 118 19-151 2-119 (127)
25 3jte_A Response regulator rece 99.9 2.1E-21 7.3E-26 130.8 15.9 119 19-151 2-120 (143)
26 4e7p_A Response regulator; DNA 99.9 2.1E-21 7.1E-26 132.2 16.0 118 19-152 19-138 (150)
27 2pl1_A Transcriptional regulat 99.9 2E-21 7E-26 127.1 15.3 115 21-151 1-115 (121)
28 3hzh_A Chemotaxis response reg 99.9 1E-21 3.5E-26 134.9 14.2 120 19-152 35-155 (157)
29 3kht_A Response regulator; PSI 99.9 1.7E-21 5.8E-26 131.6 15.1 120 19-152 4-126 (144)
30 3heb_A Response regulator rece 99.9 2E-21 6.9E-26 132.4 15.3 127 20-151 4-132 (152)
31 3hdv_A Response regulator; PSI 99.9 2.4E-21 8.2E-26 129.5 15.1 120 19-152 6-125 (136)
32 1xhf_A DYE resistance, aerobic 99.9 3E-21 1E-25 126.8 15.2 115 20-151 3-117 (123)
33 3r0j_A Possible two component 99.9 1.2E-21 4.1E-26 144.2 14.5 118 18-151 21-138 (250)
34 1k68_A Phytochrome response re 99.9 4.7E-21 1.6E-25 128.0 16.1 125 20-151 2-128 (140)
35 3b2n_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 130.5 13.5 117 20-152 3-121 (133)
36 3luf_A Two-component system re 99.9 1.8E-21 6.2E-26 144.6 15.4 120 19-151 123-242 (259)
37 3grc_A Sensor protein, kinase; 99.9 4.3E-22 1.5E-26 133.8 10.9 120 19-152 5-125 (140)
38 3hdg_A Uncharacterized protein 99.9 1.2E-21 4.2E-26 131.1 12.9 118 19-152 6-123 (137)
39 1zgz_A Torcad operon transcrip 99.9 4.5E-21 1.5E-25 125.8 15.2 114 21-151 3-116 (122)
40 3ilh_A Two component response 99.9 3.3E-21 1.1E-25 129.9 14.5 124 19-151 8-136 (146)
41 3lte_A Response regulator; str 99.9 6.1E-21 2.1E-25 126.8 14.9 118 19-151 5-122 (132)
42 3nhm_A Response regulator; pro 99.9 2E-21 6.7E-26 129.3 12.5 118 19-152 3-120 (133)
43 4dad_A Putative pilus assembly 99.9 9.1E-22 3.1E-26 133.2 10.9 123 15-152 15-139 (146)
44 3mm4_A Histidine kinase homolo 99.9 3.1E-21 1.1E-25 138.6 14.2 132 18-152 59-194 (206)
45 3cfy_A Putative LUXO repressor 99.9 2.8E-21 9.6E-26 129.9 13.1 115 21-151 5-119 (137)
46 2jba_A Phosphate regulon trans 99.9 8.7E-22 3E-26 130.0 10.2 117 21-151 3-119 (127)
47 3c3m_A Response regulator rece 99.9 4.5E-21 1.5E-25 128.8 13.8 119 20-152 3-121 (138)
48 1dcf_A ETR1 protein; beta-alph 99.9 1.5E-20 5.3E-25 125.7 16.3 120 18-152 5-127 (136)
49 3cnb_A DNA-binding response re 99.9 8.6E-21 2.9E-25 127.4 15.1 120 19-152 7-128 (143)
50 3q9s_A DNA-binding response re 99.9 2.6E-21 8.9E-26 142.8 13.6 118 18-152 35-152 (249)
51 1yio_A Response regulatory pro 99.9 5.3E-21 1.8E-25 136.7 14.7 117 19-151 3-119 (208)
52 1k66_A Phytochrome response re 99.9 7.3E-21 2.5E-25 128.4 14.6 124 19-151 5-135 (149)
53 3eul_A Possible nitrate/nitrit 99.9 5.1E-21 1.7E-25 130.4 13.8 122 14-151 9-132 (152)
54 3f6c_A Positive transcription 99.9 1.5E-21 5E-26 130.1 10.8 116 21-152 2-118 (134)
55 2a9o_A Response regulator; ess 99.9 9E-21 3.1E-25 123.7 14.3 114 21-151 2-115 (120)
56 2qzj_A Two-component response 99.9 5.4E-21 1.9E-25 128.3 13.5 115 20-151 4-118 (136)
57 1mvo_A PHOP response regulator 99.9 6.8E-21 2.3E-25 127.1 13.9 116 20-151 3-118 (136)
58 2zay_A Response regulator rece 99.9 4.9E-21 1.7E-25 129.6 13.0 119 19-151 7-125 (147)
59 2ayx_A Sensor kinase protein R 99.9 7E-21 2.4E-25 140.9 14.8 117 19-151 128-244 (254)
60 2rjn_A Response regulator rece 99.9 2.4E-20 8.2E-25 127.3 16.2 118 18-151 5-123 (154)
61 2qxy_A Response regulator; reg 99.9 1.8E-20 6.1E-25 126.1 15.3 116 19-151 3-118 (142)
62 3n0r_A Response regulator; sig 99.9 5.2E-22 1.8E-26 149.7 8.4 114 20-152 160-275 (286)
63 3h5i_A Response regulator/sens 99.9 3.1E-21 1.1E-25 129.9 11.3 118 19-152 4-122 (140)
64 2qr3_A Two-component system re 99.9 1.1E-20 3.7E-25 126.6 13.7 118 19-152 2-124 (140)
65 1dz3_A Stage 0 sporulation pro 99.9 8.3E-21 2.8E-25 126.1 12.6 116 21-151 3-120 (130)
66 3cg4_A Response regulator rece 99.9 5.1E-21 1.7E-25 128.7 11.3 120 19-152 6-125 (142)
67 3a10_A Response regulator; pho 99.9 8.6E-21 2.9E-25 123.4 11.9 114 21-152 2-115 (116)
68 3dzd_A Transcriptional regulat 99.9 2.7E-21 9.4E-26 150.4 11.2 115 21-151 1-115 (368)
69 3kcn_A Adenylate cyclase homol 99.9 2.6E-20 9E-25 126.8 14.8 117 19-151 3-120 (151)
70 3n53_A Response regulator rece 99.9 2E-21 6.7E-26 130.7 9.0 119 19-152 2-120 (140)
71 1qkk_A DCTD, C4-dicarboxylate 99.9 3.7E-20 1.3E-24 126.5 15.4 116 20-151 3-118 (155)
72 3eqz_A Response regulator; str 99.9 9.3E-21 3.2E-25 126.1 11.7 117 19-152 2-123 (135)
73 1a04_A Nitrate/nitrite respons 99.9 1.8E-20 6.2E-25 134.7 13.9 117 19-151 4-122 (215)
74 3cg0_A Response regulator rece 99.9 1.9E-20 6.7E-25 125.4 13.2 118 18-152 7-126 (140)
75 3cz5_A Two-component response 99.9 4.4E-20 1.5E-24 125.8 15.1 118 19-152 4-123 (153)
76 1s8n_A Putative antiterminator 99.9 6.5E-21 2.2E-25 136.2 11.4 117 18-151 11-128 (205)
77 2gkg_A Response regulator homo 99.8 1.1E-20 3.8E-25 124.2 11.4 119 19-152 4-123 (127)
78 1zh2_A KDP operon transcriptio 99.8 2.2E-20 7.4E-25 122.1 12.7 114 21-151 2-115 (121)
79 3cu5_A Two component transcrip 99.8 1.8E-20 6.3E-25 126.5 12.6 115 21-151 3-120 (141)
80 2qvg_A Two component response 99.8 4.8E-20 1.6E-24 124.0 13.4 124 19-150 6-131 (143)
81 1kgs_A DRRD, DNA binding respo 99.8 2.7E-20 9.1E-25 134.4 12.7 116 20-151 2-117 (225)
82 3eq2_A Probable two-component 99.8 1.6E-20 5.4E-25 146.7 12.2 116 20-151 5-121 (394)
83 2jk1_A HUPR, hydrogenase trans 99.8 7.8E-20 2.7E-24 122.7 13.9 114 21-151 2-116 (139)
84 2qsj_A DNA-binding response re 99.8 4.4E-20 1.5E-24 125.9 12.5 118 19-152 2-122 (154)
85 1w25_A Stalked-cell differenti 99.8 4.7E-20 1.6E-24 146.3 14.3 117 21-151 2-118 (459)
86 2j48_A Two-component sensor ki 99.8 1.1E-19 3.9E-24 117.6 13.0 115 21-152 2-116 (119)
87 3kyj_B CHEY6 protein, putative 99.8 4.8E-20 1.7E-24 124.6 11.2 110 18-144 11-125 (145)
88 1ys7_A Transcriptional regulat 99.8 3.8E-20 1.3E-24 134.3 11.2 117 19-151 6-122 (233)
89 2pln_A HP1043, response regula 99.8 3.1E-19 1E-23 119.4 14.6 117 15-152 13-131 (137)
90 1ny5_A Transcriptional regulat 99.8 6.5E-20 2.2E-24 143.5 12.9 115 21-151 1-115 (387)
91 2b4a_A BH3024; flavodoxin-like 99.8 6E-20 2E-24 123.1 10.7 123 10-152 5-129 (138)
92 2oqr_A Sensory transduction pr 99.8 1.5E-19 5.1E-24 131.0 13.5 116 20-152 4-119 (230)
93 2gwr_A DNA-binding response re 99.8 1.5E-19 5.2E-24 132.0 12.6 116 20-152 5-120 (238)
94 2rdm_A Response regulator rece 99.8 4.9E-19 1.7E-23 117.4 13.8 116 18-151 3-120 (132)
95 2qv0_A Protein MRKE; structura 99.8 5.5E-19 1.9E-23 118.9 13.6 116 19-152 8-125 (143)
96 3bre_A Probable two-component 99.8 1.3E-19 4.4E-24 139.4 10.9 117 20-150 18-135 (358)
97 1p2f_A Response regulator; DRR 99.8 7.1E-19 2.4E-23 126.7 14.1 112 21-151 3-114 (220)
98 1dc7_A NTRC, nitrogen regulati 99.8 4.5E-21 1.6E-25 125.7 2.1 116 20-151 3-118 (124)
99 3t8y_A CHEB, chemotaxis respon 99.8 1.1E-18 3.8E-23 120.7 13.5 115 20-151 25-152 (164)
100 3c97_A Signal transduction his 99.8 4.1E-19 1.4E-23 119.3 10.8 116 20-152 10-128 (140)
101 3c3w_A Two component transcrip 99.8 8.5E-20 2.9E-24 132.5 7.7 115 21-151 2-118 (225)
102 3klo_A Transcriptional regulat 99.8 7.8E-20 2.7E-24 132.5 7.0 118 19-152 6-127 (225)
103 3sy8_A ROCR; TIM barrel phosph 99.8 2.4E-19 8.3E-24 140.5 10.4 117 20-151 3-125 (400)
104 2hqr_A Putative transcriptiona 99.8 6E-18 2.1E-22 122.1 14.7 112 21-152 1-113 (223)
105 1qo0_D AMIR; binding protein, 99.8 1.2E-18 4.1E-23 123.6 9.1 112 19-151 11-122 (196)
106 1a2o_A CHEB methylesterase; ba 99.7 4.3E-17 1.5E-21 126.0 13.4 105 20-141 3-111 (349)
107 3luf_A Two-component system re 99.7 1.6E-17 5.6E-22 123.2 10.1 104 20-142 4-108 (259)
108 2vyc_A Biodegradative arginine 99.7 1.3E-16 4.4E-21 134.0 9.9 110 21-145 1-124 (755)
109 1w25_A Stalked-cell differenti 99.2 5.3E-10 1.8E-14 88.5 15.4 115 19-149 151-265 (459)
110 3cwo_X Beta/alpha-barrel prote 99.2 1.1E-11 3.8E-16 89.4 3.6 90 45-150 6-97 (237)
111 3q7r_A Transcriptional regulat 98.1 3.6E-05 1.2E-09 48.3 8.7 105 19-151 11-115 (121)
112 2ayx_A Sensor kinase protein R 97.6 0.00019 6.6E-09 52.3 7.6 95 18-151 9-103 (254)
113 3n75_A LDC, lysine decarboxyla 97.4 8.3E-05 2.8E-09 62.2 3.9 94 33-144 19-112 (715)
114 2yxb_A Coenzyme B12-dependent 97.2 0.014 4.9E-07 39.7 12.1 116 19-150 17-141 (161)
115 3cwo_X Beta/alpha-barrel prote 96.8 0.0029 9.8E-08 44.8 6.5 69 79-150 145-222 (237)
116 1ccw_A Protein (glutamate muta 95.4 0.21 7.2E-06 32.8 9.4 104 27-146 14-128 (137)
117 1wv2_A Thiazole moeity, thiazo 95.0 0.41 1.4E-05 35.1 10.5 81 37-136 128-215 (265)
118 1y80_A Predicted cobalamin bin 94.8 0.27 9.3E-06 34.5 9.2 100 20-136 88-196 (210)
119 3ezx_A MMCP 1, monomethylamine 94.8 0.19 6.5E-06 35.7 8.3 101 19-136 91-202 (215)
120 3q58_A N-acetylmannosamine-6-p 94.2 0.71 2.4E-05 33.1 10.2 86 32-136 117-209 (229)
121 3igs_A N-acetylmannosamine-6-p 93.3 1.3 4.3E-05 31.8 10.2 86 32-136 117-209 (232)
122 2i2x_B MTAC, methyltransferase 93.3 1.4 4.9E-05 31.9 10.7 101 19-138 122-231 (258)
123 3o63_A Probable thiamine-phosp 90.8 2 6.8E-05 31.0 8.8 71 48-135 140-217 (243)
124 2htm_A Thiazole biosynthesis p 90.6 0.75 2.6E-05 33.8 6.3 79 40-136 120-206 (268)
125 1xrs_B D-lysine 5,6-aminomutas 90.1 3.1 0.00011 30.5 9.3 108 21-145 121-249 (262)
126 2ekc_A AQ_1548, tryptophan syn 89.7 1.8 6E-05 31.5 7.9 72 77-150 43-142 (262)
127 2xij_A Methylmalonyl-COA mutas 89.7 4.8 0.00016 34.0 11.2 113 20-148 604-725 (762)
128 3qja_A IGPS, indole-3-glycerol 89.5 4.9 0.00017 29.5 10.5 88 33-136 151-241 (272)
129 3qz6_A HPCH/HPAI aldolase; str 89.2 3.2 0.00011 30.2 8.9 74 77-151 36-110 (261)
130 2v5j_A 2,4-dihydroxyhept-2-ENE 88.9 5.6 0.00019 29.4 11.8 74 77-151 59-133 (287)
131 1geq_A Tryptophan synthase alp 88.5 1.4 4.7E-05 31.5 6.5 52 94-148 69-126 (248)
132 3vnd_A TSA, tryptophan synthas 88.3 0.59 2E-05 34.4 4.4 55 94-150 83-143 (267)
133 1req_A Methylmalonyl-COA mutas 87.9 5.4 0.00018 33.5 10.3 110 20-145 596-714 (727)
134 3nav_A Tryptophan synthase alp 86.5 1.4 4.8E-05 32.4 5.5 54 94-149 85-144 (271)
135 2vws_A YFAU, 2-keto-3-deoxy su 86.0 8 0.00028 28.1 11.9 74 77-151 38-112 (267)
136 3kp1_A D-ornithine aminomutase 84.9 8.3 0.00028 32.2 9.6 109 20-145 602-726 (763)
137 1yad_A Regulatory protein TENI 84.2 8.5 0.00029 26.8 9.8 67 49-134 116-189 (221)
138 3rht_A (gatase1)-like protein; 83.7 0.72 2.4E-05 33.8 2.8 32 21-52 5-38 (259)
139 3fkq_A NTRC-like two-domain pr 83.4 3.1 0.00011 31.7 6.4 58 19-90 20-80 (373)
140 1qop_A Tryptophan synthase alp 82.9 1.7 5.7E-05 31.7 4.6 72 77-150 43-142 (268)
141 3lab_A Putative KDPG (2-keto-3 82.4 6.5 0.00022 27.9 7.3 63 78-146 38-100 (217)
142 1ujp_A Tryptophan synthase alp 82.0 2.7 9.4E-05 30.8 5.4 68 79-149 43-138 (271)
143 3bul_A Methionine synthase; tr 81.6 11 0.00037 30.8 9.2 99 20-136 98-210 (579)
144 1xi3_A Thiamine phosphate pyro 80.9 6.9 0.00024 26.9 7.1 53 78-134 128-187 (215)
145 3tfw_A Putative O-methyltransf 80.4 7.8 0.00027 27.4 7.3 79 20-115 88-169 (248)
146 2oo3_A Protein involved in cat 79.5 7.3 0.00025 28.8 6.9 70 20-101 113-183 (283)
147 1dxe_A 2-dehydro-3-deoxy-galac 79.4 15 0.00051 26.4 12.5 75 76-151 38-113 (256)
148 3l4e_A Uncharacterized peptida 79.3 14 0.00046 25.8 8.9 63 20-102 27-99 (206)
149 4gud_A Imidazole glycerol phos 78.8 13 0.00044 25.5 7.9 35 21-55 3-37 (211)
150 2xci_A KDO-transferase, 3-deox 78.4 14 0.00048 27.8 8.6 66 79-152 278-344 (374)
151 3ceu_A Thiamine phosphate pyro 78.1 9.4 0.00032 26.5 7.0 55 78-134 107-169 (210)
152 1qpo_A Quinolinate acid phosph 78.0 16 0.00055 26.9 8.5 95 22-135 167-267 (284)
153 1r8j_A KAIA; circadian clock p 77.3 19 0.00065 26.5 10.9 82 19-117 8-90 (289)
154 3s83_A Ggdef family protein; s 77.0 8.3 0.00028 27.4 6.7 98 38-150 146-254 (259)
155 1xm3_A Thiazole biosynthesis p 76.9 16 0.00054 26.4 8.1 41 93-136 166-206 (264)
156 2gek_A Phosphatidylinositol ma 76.1 21 0.00073 26.4 10.1 65 79-152 283-347 (406)
157 2v82_A 2-dehydro-3-deoxy-6-pho 75.7 7.2 0.00025 26.9 5.9 75 40-135 97-174 (212)
158 3l9w_A Glutathione-regulated p 74.7 18 0.00061 28.0 8.3 55 77-136 67-121 (413)
159 3l0g_A Nicotinate-nucleotide p 73.9 11 0.00037 28.2 6.6 54 94-151 195-248 (300)
160 1y0e_A Putative N-acetylmannos 73.9 19 0.00066 24.8 8.9 41 93-136 163-203 (223)
161 3ffs_A Inosine-5-monophosphate 73.5 30 0.001 26.8 11.7 99 21-134 157-272 (400)
162 1ka9_F Imidazole glycerol phos 73.0 15 0.00051 25.9 7.1 53 81-136 48-103 (252)
163 3tsm_A IGPS, indole-3-glycerol 71.9 27 0.00091 25.6 11.7 95 33-143 158-260 (272)
164 3ovp_A Ribulose-phosphate 3-ep 71.8 22 0.00074 25.2 7.6 55 78-135 134-195 (228)
165 2gjl_A Hypothetical protein PA 71.7 28 0.00096 25.8 10.5 77 40-134 114-198 (328)
166 3ec7_A Putative dehydrogenase; 71.6 9.3 0.00032 28.7 6.0 112 10-149 13-132 (357)
167 2lci_A Protein OR36; structura 71.2 15 0.00052 22.5 6.2 27 22-48 53-79 (134)
168 1ka9_F Imidazole glycerol phos 70.8 16 0.00055 25.7 6.9 54 94-150 185-244 (252)
169 4e38_A Keto-hydroxyglutarate-a 70.6 25 0.00084 25.1 7.6 95 36-147 27-122 (232)
170 2w6r_A Imidazole glycerol phos 70.2 14 0.00049 26.3 6.5 51 94-147 63-119 (266)
171 3tqv_A Nicotinate-nucleotide p 69.8 16 0.00054 27.1 6.6 69 79-151 169-239 (287)
172 4fo4_A Inosine 5'-monophosphat 68.9 36 0.0012 26.0 11.3 100 21-135 121-238 (366)
173 3u81_A Catechol O-methyltransf 68.7 6.7 0.00023 27.1 4.3 60 20-89 83-145 (221)
174 3tr6_A O-methyltransferase; ce 68.2 16 0.00056 24.9 6.3 71 20-102 89-162 (225)
175 2iuy_A Avigt4, glycosyltransfe 68.2 31 0.0011 24.9 8.2 53 90-152 252-306 (342)
176 3f4w_A Putative hexulose 6 pho 67.9 12 0.00042 25.6 5.5 64 78-144 127-199 (211)
177 3paj_A Nicotinate-nucleotide p 67.7 18 0.00061 27.2 6.6 54 94-151 219-272 (320)
178 3c3p_A Methyltransferase; NP_9 66.6 14 0.0005 25.0 5.7 65 20-102 81-148 (210)
179 2avd_A Catechol-O-methyltransf 66.5 16 0.00055 25.0 6.0 71 20-102 94-167 (229)
180 3fwz_A Inner membrane protein 66.3 22 0.00076 22.5 9.0 53 78-135 71-123 (140)
181 3vk5_A MOEO5; TIM barrel, tran 66.3 20 0.0007 26.5 6.5 57 79-137 200-256 (286)
182 4h08_A Putative hydrolase; GDS 66.2 26 0.00089 23.3 9.7 85 19-116 19-119 (200)
183 3dr5_A Putative O-methyltransf 66.1 28 0.00096 24.1 7.2 67 20-102 81-151 (221)
184 3khj_A Inosine-5-monophosphate 66.0 41 0.0014 25.5 9.7 87 33-134 134-233 (361)
185 3duw_A OMT, O-methyltransferas 66.0 28 0.00097 23.6 8.4 81 20-115 83-166 (223)
186 1thf_D HISF protein; thermophI 65.1 26 0.0009 24.6 7.0 53 94-149 184-242 (253)
187 4fxs_A Inosine-5'-monophosphat 64.8 21 0.00072 28.4 6.9 56 78-136 243-299 (496)
188 1geq_A Tryptophan synthase alp 64.6 34 0.0012 24.0 7.7 41 93-136 179-219 (248)
189 2tps_A Protein (thiamin phosph 64.4 32 0.0011 23.7 8.1 54 78-134 136-197 (227)
190 4e5v_A Putative THUA-like prot 64.0 13 0.00046 27.2 5.3 84 19-116 3-94 (281)
191 3cbg_A O-methyltransferase; cy 63.7 20 0.00067 24.9 6.0 71 20-102 97-170 (232)
192 2w6r_A Imidazole glycerol phos 63.5 13 0.00044 26.5 5.1 53 93-148 188-246 (266)
193 1h7n_A 5-aminolaevulinic acid 63.2 19 0.00066 27.2 5.9 50 77-131 255-304 (342)
194 3bo9_A Putative nitroalkan dio 63.1 44 0.0015 24.8 10.2 77 40-134 120-202 (326)
195 3tqv_A Nicotinate-nucleotide p 62.9 29 0.001 25.6 6.9 90 23-134 172-267 (287)
196 3gjy_A Spermidine synthase; AP 62.8 45 0.0015 24.9 8.9 69 20-102 113-188 (317)
197 3usb_A Inosine-5'-monophosphat 62.8 57 0.0019 26.0 11.4 58 78-135 318-386 (511)
198 1pv8_A Delta-aminolevulinic ac 62.5 18 0.00062 27.2 5.7 65 51-131 229-293 (330)
199 3o07_A Pyridoxine biosynthesis 62.5 8.3 0.00028 28.6 3.8 40 93-135 186-227 (291)
200 1izc_A Macrophomate synthase i 61.7 49 0.0017 24.9 9.9 75 77-151 62-139 (339)
201 3l0g_A Nicotinate-nucleotide p 61.7 22 0.00074 26.6 6.0 91 22-134 180-276 (300)
202 1z0s_A Probable inorganic poly 61.6 24 0.00083 25.9 6.3 91 21-151 30-120 (278)
203 2j9r_A Thymidine kinase; TK1, 61.1 35 0.0012 24.0 6.8 34 78-115 101-135 (214)
204 3inp_A D-ribulose-phosphate 3- 60.9 19 0.00064 25.9 5.5 70 79-150 54-129 (246)
205 3gnn_A Nicotinate-nucleotide p 60.6 20 0.00069 26.7 5.7 54 94-151 197-250 (298)
206 2z6i_A Trans-2-enoyl-ACP reduc 60.3 50 0.0017 24.5 10.0 54 78-134 130-188 (332)
207 3tdn_A FLR symmetric alpha-bet 60.2 33 0.0011 24.2 6.7 55 78-135 48-106 (247)
208 2lnd_A De novo designed protei 60.0 25 0.00084 20.9 6.6 44 108-151 51-98 (112)
209 1fy2_A Aspartyl dipeptidase; s 59.9 42 0.0014 23.5 8.3 64 19-102 30-99 (229)
210 2y88_A Phosphoribosyl isomeras 59.7 30 0.001 24.1 6.4 67 78-147 162-241 (244)
211 1qo2_A Molecule: N-((5-phospho 59.2 20 0.00068 25.2 5.4 53 93-148 176-240 (241)
212 1o4u_A Type II quinolic acid p 59.0 36 0.0012 25.1 6.8 55 94-151 180-234 (285)
213 2yw3_A 4-hydroxy-2-oxoglutarat 58.6 42 0.0014 23.2 8.6 80 49-150 110-196 (207)
214 3okp_A GDP-mannose-dependent a 58.6 33 0.0011 25.2 6.8 64 79-152 273-342 (394)
215 1rd5_A Tryptophan synthase alp 58.6 13 0.00044 26.7 4.3 53 93-149 82-137 (262)
216 1l6s_A Porphobilinogen synthas 58.4 35 0.0012 25.6 6.6 63 52-131 224-286 (323)
217 1i1q_B Anthranilate synthase c 58.2 39 0.0013 22.7 6.6 33 21-53 1-33 (192)
218 1h5y_A HISF; histidine biosynt 58.1 43 0.0015 23.1 8.2 69 79-150 168-246 (253)
219 3bw2_A 2-nitropropane dioxygen 58.0 58 0.002 24.5 10.6 39 93-134 196-234 (369)
220 2agk_A 1-(5-phosphoribosyl)-5- 58.0 38 0.0013 24.4 6.8 68 80-149 173-257 (260)
221 3kts_A Glycerol uptake operon 57.7 12 0.0004 26.1 3.7 54 77-137 126-179 (192)
222 3qja_A IGPS, indole-3-glycerol 57.0 40 0.0014 24.5 6.8 69 79-150 86-157 (272)
223 2fli_A Ribulose-phosphate 3-ep 56.9 35 0.0012 23.3 6.3 68 78-146 131-212 (220)
224 1eep_A Inosine 5'-monophosphat 56.8 64 0.0022 24.7 11.9 59 77-135 214-283 (404)
225 3hm2_A Precorrin-6Y C5,15-meth 56.6 37 0.0013 21.9 6.4 78 19-115 48-127 (178)
226 1req_B Methylmalonyl-COA mutas 56.4 14 0.00049 30.5 4.6 95 31-145 525-626 (637)
227 3r2g_A Inosine 5'-monophosphat 56.4 26 0.00088 26.8 5.8 54 78-136 112-168 (361)
228 1o4u_A Type II quinolic acid p 55.6 18 0.00062 26.7 4.7 94 22-134 165-265 (285)
229 3tha_A Tryptophan synthase alp 55.5 22 0.00076 25.7 5.1 41 108-148 88-134 (252)
230 4gmf_A Yersiniabactin biosynth 55.2 14 0.00048 28.2 4.2 31 120-150 84-114 (372)
231 1tqx_A D-ribulose-5-phosphate 55.1 14 0.00049 26.2 4.0 55 78-135 138-199 (227)
232 1mjf_A Spermidine synthase; sp 55.0 48 0.0017 23.8 7.0 67 19-102 97-181 (281)
233 1h1y_A D-ribulose-5-phosphate 55.0 39 0.0013 23.5 6.3 55 78-135 138-199 (228)
234 1jcn_A Inosine monophosphate d 55.0 77 0.0026 25.1 9.4 39 93-134 346-384 (514)
235 4eyg_A Twin-arginine transloca 54.2 41 0.0014 24.5 6.6 79 21-115 140-230 (368)
236 1qv9_A F420-dependent methylen 54.1 20 0.00069 26.0 4.5 58 77-138 63-120 (283)
237 4avf_A Inosine-5'-monophosphat 53.9 26 0.00088 27.8 5.7 56 78-136 241-297 (490)
238 1iy9_A Spermidine synthase; ro 53.8 58 0.002 23.3 8.4 68 19-102 98-177 (275)
239 2f9f_A First mannosyl transfer 53.5 43 0.0015 21.8 8.3 63 79-152 98-160 (177)
240 4e38_A Keto-hydroxyglutarate-a 53.2 58 0.002 23.1 7.1 72 41-133 124-198 (232)
241 2r60_A Glycosyl transferase, g 53.1 75 0.0026 24.4 9.5 94 33-152 321-422 (499)
242 4af0_A Inosine-5'-monophosphat 52.9 28 0.00097 28.2 5.7 56 77-135 292-348 (556)
243 2iw1_A Lipopolysaccharide core 52.9 63 0.0021 23.4 8.3 64 79-152 271-335 (374)
244 1yxy_A Putative N-acetylmannos 52.7 55 0.0019 22.7 8.0 39 93-135 175-213 (234)
245 4avf_A Inosine-5'-monophosphat 52.5 85 0.0029 24.8 12.7 89 32-135 257-359 (490)
246 2q5c_A NTRC family transcripti 51.8 54 0.0019 22.4 11.4 117 20-151 4-138 (196)
247 1thf_D HISF protein; thermophI 51.7 47 0.0016 23.2 6.4 40 94-136 63-102 (253)
248 3rc1_A Sugar 3-ketoreductase; 51.5 41 0.0014 25.0 6.3 103 18-149 25-134 (350)
249 1qop_A Tryptophan synthase alp 51.2 48 0.0017 23.8 6.4 40 94-136 194-233 (268)
250 1h5y_A HISF; histidine biosynt 51.2 56 0.0019 22.5 6.7 40 93-135 65-104 (253)
251 1x1o_A Nicotinate-nucleotide p 50.9 41 0.0014 24.8 6.0 54 94-150 183-236 (286)
252 1qdl_B Protein (anthranilate s 50.9 6.9 0.00024 26.7 1.7 31 23-53 4-34 (195)
253 2fpo_A Methylase YHHF; structu 50.8 54 0.0018 22.0 8.4 67 21-102 78-146 (202)
254 3o4f_A Spermidine synthase; am 50.4 30 0.001 25.6 5.2 70 19-103 106-187 (294)
255 1qpo_A Quinolinate acid phosph 50.4 40 0.0014 24.8 5.9 54 94-151 182-235 (284)
256 3ajx_A 3-hexulose-6-phosphate 50.4 31 0.0011 23.4 5.1 45 93-139 40-86 (207)
257 3usb_A Inosine-5'-monophosphat 50.1 33 0.0011 27.4 5.7 57 77-136 267-324 (511)
258 3f4w_A Putative hexulose 6 pho 50.0 34 0.0012 23.3 5.3 14 123-136 70-83 (211)
259 2f6u_A GGGPS, (S)-3-O-geranylg 50.0 20 0.00069 25.6 4.1 54 77-140 32-87 (234)
260 2i7c_A Spermidine synthase; tr 49.8 69 0.0024 23.0 10.0 70 19-103 101-181 (283)
261 1rd5_A Tryptophan synthase alp 49.6 30 0.001 24.6 5.1 41 93-136 189-229 (262)
262 3obk_A Delta-aminolevulinic ac 49.5 31 0.0011 26.2 5.1 48 77-130 259-306 (356)
263 1w5q_A Delta-aminolevulinic ac 49.2 28 0.00097 26.3 4.8 51 77-133 252-302 (337)
264 3jy6_A Transcriptional regulat 48.2 66 0.0023 22.4 8.1 61 34-116 27-93 (276)
265 4fo4_A Inosine 5'-monophosphat 48.0 40 0.0014 25.7 5.7 57 77-136 119-176 (366)
266 3cvo_A Methyltransferase-like 48.0 66 0.0023 22.3 7.9 26 20-45 51-76 (202)
267 2b2c_A Spermidine synthase; be 48.0 80 0.0027 23.2 8.4 69 19-102 131-210 (314)
268 2f6u_A GGGPS, (S)-3-O-geranylg 47.5 58 0.002 23.2 6.2 55 80-138 165-219 (234)
269 2yzr_A Pyridoxal biosynthesis 47.2 23 0.00077 26.8 4.1 41 93-136 228-270 (330)
270 3ffs_A Inosine-5-monophosphate 47.0 38 0.0013 26.2 5.5 55 78-136 156-211 (400)
271 1x1o_A Nicotinate-nucleotide p 46.8 83 0.0028 23.1 8.9 91 22-134 168-265 (286)
272 4ew6_A D-galactose-1-dehydroge 46.8 64 0.0022 23.8 6.7 101 16-149 21-126 (330)
273 1ujp_A Tryptophan synthase alp 46.7 71 0.0024 23.1 6.7 38 94-136 191-228 (271)
274 4hjf_A Ggdef family protein; s 46.6 41 0.0014 25.1 5.6 98 38-150 219-327 (340)
275 3f4k_A Putative methyltransfer 46.6 21 0.0007 24.8 3.8 38 76-114 112-149 (257)
276 2c6q_A GMP reductase 2; TIM ba 46.5 43 0.0015 25.3 5.7 54 78-134 132-186 (351)
277 1uir_A Polyamine aminopropyltr 46.4 84 0.0029 23.0 9.3 70 19-103 100-184 (314)
278 3g8r_A Probable spore coat pol 46.1 96 0.0033 23.6 8.2 75 33-127 80-154 (350)
279 1g5t_A COB(I)alamin adenosyltr 46.1 71 0.0024 22.1 7.3 47 76-125 118-169 (196)
280 3gnn_A Nicotinate-nucleotide p 45.7 90 0.0031 23.1 9.4 91 22-134 182-278 (298)
281 3nav_A Tryptophan synthase alp 45.5 50 0.0017 24.0 5.7 41 94-137 197-237 (271)
282 3r75_A Anthranilate/para-amino 45.4 75 0.0026 26.2 7.3 34 19-52 445-478 (645)
283 2ift_A Putative methylase HI07 45.1 67 0.0023 21.5 7.6 68 21-102 77-149 (201)
284 1w1z_A Delta-aminolevulinic ac 44.6 27 0.00094 26.2 4.1 48 78-131 246-293 (328)
285 2e6f_A Dihydroorotate dehydrog 44.3 40 0.0014 24.6 5.2 50 94-145 232-288 (314)
286 3h2s_A Putative NADH-flavin re 44.1 61 0.0021 21.7 5.8 35 21-55 1-36 (224)
287 1vzw_A Phosphoribosyl isomeras 44.1 27 0.00093 24.4 4.0 53 93-148 178-239 (244)
288 2l69_A Rossmann 2X3 fold prote 44.1 53 0.0018 20.0 10.9 40 21-60 3-42 (134)
289 2o07_A Spermidine synthase; st 43.7 93 0.0032 22.7 8.0 69 19-102 118-197 (304)
290 3hp4_A GDSL-esterase; psychrot 43.5 57 0.002 21.0 5.5 26 20-45 2-37 (185)
291 1tqj_A Ribulose-phosphate 3-ep 43.5 39 0.0013 23.7 4.8 55 92-150 49-107 (230)
292 3axs_A Probable N(2),N(2)-dime 43.3 79 0.0027 24.3 6.8 78 21-118 78-160 (392)
293 3e05_A Precorrin-6Y C5,15-meth 43.2 70 0.0024 21.2 7.4 77 20-115 64-142 (204)
294 2bfw_A GLGA glycogen synthase; 42.6 69 0.0023 20.9 10.3 105 20-152 70-178 (200)
295 2b7n_A Probable nicotinate-nuc 42.5 94 0.0032 22.5 6.8 54 94-150 169-222 (273)
296 2p10_A MLL9387 protein; putati 42.5 1E+02 0.0034 22.8 8.1 79 42-137 161-259 (286)
297 1rzu_A Glycogen synthase 1; gl 42.5 1.1E+02 0.0038 23.2 9.9 107 20-152 320-438 (485)
298 2pr7_A Haloacid dehalogenase/e 42.1 56 0.0019 19.7 8.0 38 80-121 3-47 (137)
299 3inp_A D-ribulose-phosphate 3- 42.0 39 0.0013 24.2 4.6 58 78-136 156-222 (246)
300 3e2i_A Thymidine kinase; Zn-bi 42.0 47 0.0016 23.5 4.9 36 77-116 100-136 (219)
301 3l8h_A Putative haloacid dehal 41.9 68 0.0023 20.6 7.0 24 92-119 31-54 (179)
302 3c3y_A Pfomt, O-methyltransfer 41.5 85 0.0029 21.7 7.7 72 20-102 95-169 (237)
303 2c6q_A GMP reductase 2; TIM ba 41.2 1.1E+02 0.0038 23.0 11.6 95 30-139 146-255 (351)
304 3lcv_B Sisomicin-gentamicin re 40.9 28 0.00094 25.7 3.6 75 19-117 155-236 (281)
305 2p9j_A Hypothetical protein AQ 40.8 68 0.0023 20.3 9.0 53 94-150 42-95 (162)
306 2jjm_A Glycosyl transferase, g 40.8 70 0.0024 23.5 6.1 64 79-152 285-348 (394)
307 1vc4_A Indole-3-glycerol phosp 40.7 29 0.001 24.9 3.8 86 35-136 142-235 (254)
308 3paj_A Nicotinate-nucleotide p 40.3 1.2E+02 0.0039 22.8 8.9 91 22-134 204-300 (320)
309 2hsj_A Putative platelet activ 39.8 37 0.0013 22.6 4.1 86 19-117 33-133 (214)
310 2d00_A V-type ATP synthase sub 39.7 66 0.0023 19.9 10.5 80 19-117 2-81 (109)
311 3huu_A Transcription regulator 39.6 98 0.0034 21.9 9.6 64 33-117 46-115 (305)
312 3adn_A Spermidine synthase; am 39.5 38 0.0013 24.8 4.3 67 20-102 107-186 (294)
313 1gox_A (S)-2-hydroxy-acid oxid 39.4 1.2E+02 0.0042 22.9 10.0 90 34-139 215-312 (370)
314 3gu3_A Methyltransferase; alph 39.2 54 0.0019 23.3 5.1 77 20-114 47-125 (284)
315 1qap_A Quinolinic acid phospho 38.7 1.2E+02 0.004 22.4 6.9 53 95-151 197-249 (296)
316 1ep3_A Dihydroorotate dehydrog 38.5 47 0.0016 24.0 4.7 50 94-146 230-285 (311)
317 3vnd_A TSA, tryptophan synthas 38.4 63 0.0021 23.4 5.3 43 93-138 194-236 (267)
318 4adt_A Pyridoxine biosynthetic 38.3 42 0.0014 24.8 4.4 41 93-136 195-237 (297)
319 4ef8_A Dihydroorotate dehydrog 38.0 45 0.0015 25.3 4.6 51 94-146 265-322 (354)
320 3sy8_A ROCR; TIM barrel phosph 37.9 70 0.0024 24.1 5.7 97 39-150 284-391 (400)
321 1p0k_A Isopentenyl-diphosphate 37.6 66 0.0023 24.0 5.5 47 91-139 236-283 (349)
322 1jub_A Dihydroorotate dehydrog 37.6 63 0.0022 23.5 5.3 40 94-134 229-268 (311)
323 1ik9_C DNA ligase IV; DNA END 37.6 23 0.0008 17.5 2.0 17 135-151 18-34 (37)
324 3oix_A Putative dihydroorotate 37.5 63 0.0021 24.4 5.3 40 94-134 262-301 (345)
325 3kbb_A Phosphorylated carbohyd 37.5 87 0.003 20.6 6.8 55 92-151 88-153 (216)
326 3vzx_A Heptaprenylglyceryl pho 37.4 1.1E+02 0.0037 21.7 6.4 55 79-137 154-208 (228)
327 2l69_A Rossmann 2X3 fold prote 37.4 70 0.0024 19.5 5.8 39 21-59 78-116 (134)
328 2r6o_A Putative diguanylate cy 37.2 72 0.0024 23.2 5.5 98 38-150 170-278 (294)
329 1jvn_A Glutamine, bifunctional 36.9 89 0.0031 25.1 6.4 55 93-150 484-545 (555)
330 3qk7_A Transcriptional regulat 36.8 1.1E+02 0.0037 21.5 7.0 18 34-51 30-47 (294)
331 2pt6_A Spermidine synthase; tr 36.7 1.2E+02 0.0043 22.2 9.9 69 19-102 139-218 (321)
332 3q58_A N-acetylmannosamine-6-p 36.3 1.1E+02 0.0038 21.4 6.5 51 78-134 101-153 (229)
333 4a29_A Engineered retro-aldol 36.3 1.2E+02 0.0042 22.0 11.3 91 31-137 140-233 (258)
334 3pvs_A Replication-associated 36.1 49 0.0017 25.8 4.7 70 78-151 106-177 (447)
335 2esr_A Methyltransferase; stru 36.0 86 0.0029 20.1 7.1 67 20-101 54-123 (177)
336 2px2_A Genome polyprotein [con 36.0 46 0.0016 24.3 4.1 25 76-102 137-161 (269)
337 3sgz_A Hydroxyacid oxidase 2; 36.0 1.4E+02 0.0048 22.6 9.1 92 32-139 205-304 (352)
338 1nvm_A HOA, 4-hydroxy-2-oxoval 35.8 79 0.0027 23.6 5.7 43 91-135 67-111 (345)
339 3oy2_A Glycosyltransferase B73 35.5 1.3E+02 0.0045 22.1 9.2 63 79-152 274-353 (413)
340 3zwt_A Dihydroorotate dehydrog 35.5 71 0.0024 24.3 5.4 40 94-134 285-324 (367)
341 3e8x_A Putative NAD-dependent 35.4 45 0.0015 22.8 4.0 34 18-51 19-52 (236)
342 2xxa_A Signal recognition part 35.3 1.5E+02 0.005 23.0 7.2 10 77-86 182-191 (433)
343 1rpx_A Protein (ribulose-phosp 35.2 1.1E+02 0.0037 21.0 7.9 66 78-144 140-219 (230)
344 1jcn_A Inosine monophosphate d 35.2 95 0.0032 24.5 6.3 57 77-136 266-323 (514)
345 2qzs_A Glycogen synthase; glyc 35.1 1.5E+02 0.005 22.5 9.1 64 79-152 367-439 (485)
346 1sxj_E Activator 1 40 kDa subu 34.9 63 0.0021 23.6 5.0 69 78-151 134-205 (354)
347 3r3h_A O-methyltransferase, SA 34.7 16 0.00056 25.7 1.6 71 20-102 85-158 (242)
348 2nli_A Lactate oxidase; flavoe 34.4 1.5E+02 0.0051 22.4 9.3 92 32-139 217-316 (368)
349 3c48_A Predicted glycosyltrans 34.3 1.4E+02 0.0048 22.1 8.7 64 79-152 326-389 (438)
350 3sm3_A SAM-dependent methyltra 34.2 60 0.0021 21.8 4.5 39 76-115 99-141 (235)
351 1xx6_A Thymidine kinase; NESG, 34.1 37 0.0013 23.2 3.3 34 78-115 81-115 (191)
352 3o9z_A Lipopolysaccaride biosy 34.0 46 0.0016 24.4 4.0 44 107-150 71-118 (312)
353 3m4x_A NOL1/NOP2/SUN family pr 33.9 1.3E+02 0.0043 23.6 6.7 51 21-86 131-183 (456)
354 3nl6_A Thiamine biosynthetic b 33.9 1.8E+02 0.0063 23.3 9.2 67 46-128 111-192 (540)
355 3khj_A Inosine-5-monophosphate 33.7 81 0.0028 23.9 5.4 56 77-136 116-172 (361)
356 1qo2_A Molecule: N-((5-phospho 33.6 48 0.0016 23.1 4.0 39 94-136 63-101 (241)
357 1f76_A Dihydroorotate dehydrog 33.6 63 0.0022 23.9 4.8 40 94-134 276-315 (336)
358 3dtn_A Putative methyltransfer 33.1 79 0.0027 21.4 5.0 37 77-114 108-147 (234)
359 2wqp_A Polysialic acid capsule 33.0 1.2E+02 0.0042 22.9 6.3 77 31-127 91-167 (349)
360 2nzl_A Hydroxyacid oxidase 1; 32.9 1.6E+02 0.0056 22.4 8.0 94 32-141 240-341 (392)
361 1wl8_A GMP synthase [glutamine 32.8 55 0.0019 21.8 4.0 31 23-53 3-33 (189)
362 2kpo_A Rossmann 2X2 fold prote 32.6 78 0.0027 18.6 7.1 39 22-60 4-42 (110)
363 1njg_A DNA polymerase III subu 32.6 87 0.003 20.8 5.1 70 78-151 126-197 (250)
364 2kw5_A SLR1183 protein; struct 32.5 1.1E+02 0.0036 20.1 6.3 67 77-148 93-160 (202)
365 1vrd_A Inosine-5'-monophosphat 32.2 1.8E+02 0.0062 22.7 9.9 58 78-135 299-367 (494)
366 1vli_A Spore coat polysacchari 32.1 1.1E+02 0.0037 23.6 5.9 77 31-127 101-177 (385)
367 3aon_B V-type sodium ATPase su 31.9 95 0.0032 19.4 5.2 76 21-117 3-78 (115)
368 1f0k_A MURG, UDP-N-acetylgluco 31.8 1.4E+02 0.0049 21.4 7.1 53 93-151 264-322 (364)
369 1i4n_A Indole-3-glycerol phosp 31.7 1.4E+02 0.0049 21.3 10.0 87 33-136 139-229 (251)
370 4htf_A S-adenosylmethionine-de 31.6 1.3E+02 0.0046 21.0 7.5 80 20-115 90-173 (285)
371 3m6w_A RRNA methylase; rRNA me 31.4 80 0.0027 24.9 5.2 51 21-86 127-178 (464)
372 3oa2_A WBPB; oxidoreductase, s 31.4 76 0.0026 23.2 4.9 42 108-149 73-118 (318)
373 3l6u_A ABC-type sugar transpor 31.2 1.3E+02 0.0045 20.8 7.1 69 33-117 27-98 (293)
374 2gjl_A Hypothetical protein PA 31.2 1.5E+02 0.0053 21.6 7.2 50 77-136 95-144 (328)
375 3p9n_A Possible methyltransfer 31.2 1.1E+02 0.0038 19.9 10.7 82 20-115 67-153 (189)
376 3rpe_A MDAB, modulator of drug 31.2 1.3E+02 0.0046 20.9 6.0 10 21-30 26-35 (218)
377 3ntv_A MW1564 protein; rossman 31.1 1.3E+02 0.0043 20.6 8.6 67 19-102 94-164 (232)
378 1vhc_A Putative KHG/KDPG aldol 31.0 1.4E+02 0.0047 20.9 7.1 64 50-134 117-183 (224)
379 3egc_A Putative ribose operon 31.0 1.3E+02 0.0046 20.9 6.1 20 33-52 27-46 (291)
380 2chg_A Replication factor C sm 30.9 1.1E+02 0.0036 20.0 5.3 71 77-151 101-173 (226)
381 2jbm_A Nicotinate-nucleotide p 30.8 1.5E+02 0.0052 21.8 6.4 53 95-150 185-237 (299)
382 3l8d_A Methyltransferase; stru 30.7 93 0.0032 21.1 5.1 74 76-150 114-189 (242)
383 3s5p_A Ribose 5-phosphate isom 30.5 1.1E+02 0.0039 20.6 5.1 32 20-51 21-54 (166)
384 3fro_A GLGA glycogen synthase; 30.4 1.6E+02 0.0055 21.6 11.5 106 20-152 285-393 (439)
385 1iow_A DD-ligase, DDLB, D-ALA\ 30.4 57 0.002 23.2 4.0 33 21-53 3-43 (306)
386 3c6k_A Spermine synthase; sper 30.1 1.9E+02 0.0064 22.2 7.5 57 21-89 229-295 (381)
387 3lkb_A Probable branched-chain 30.1 1.6E+02 0.0055 21.5 7.3 42 77-122 197-238 (392)
388 1vrd_A Inosine-5'-monophosphat 30.1 1.1E+02 0.0037 24.0 5.8 57 77-136 248-305 (494)
389 1viz_A PCRB protein homolog; s 30.1 1.4E+02 0.0049 21.2 5.9 55 80-138 157-211 (240)
390 2qjg_A Putative aldolase MJ040 30.0 1.5E+02 0.005 21.0 6.2 51 77-134 178-234 (273)
391 3l4b_C TRKA K+ channel protien 29.9 1.3E+02 0.0044 20.3 8.1 55 77-136 64-118 (218)
392 3k4h_A Putative transcriptiona 29.9 1.4E+02 0.0048 20.7 7.6 20 33-52 32-51 (292)
393 3n1u_A Hydrolase, HAD superfam 29.8 1.2E+02 0.0042 20.0 6.5 49 97-150 55-105 (191)
394 2kx7_A Sensor-like histidine k 29.8 1.1E+02 0.0037 19.4 4.6 48 19-86 6-53 (117)
395 3ib6_A Uncharacterized protein 29.8 1.2E+02 0.0041 19.8 5.7 38 92-133 38-78 (189)
396 3mti_A RRNA methylase; SAM-dep 29.7 1.1E+02 0.0036 19.8 5.0 53 20-86 44-97 (185)
397 1xj5_A Spermidine synthase 1; 29.7 1.7E+02 0.0059 21.7 9.5 70 19-102 143-223 (334)
398 3hut_A Putative branched-chain 29.7 1.4E+02 0.0048 21.4 6.1 41 78-122 194-234 (358)
399 3noy_A 4-hydroxy-3-methylbut-2 29.7 59 0.002 24.9 3.9 64 82-149 61-127 (366)
400 2rgy_A Transcriptional regulat 29.7 1.3E+02 0.0046 20.9 5.9 17 34-50 28-44 (290)
401 3tlq_A Regulatory protein YDIV 29.6 24 0.00083 24.8 1.8 72 77-149 162-241 (242)
402 3snr_A Extracellular ligand-bi 29.5 1.5E+02 0.0053 21.1 6.6 41 78-122 190-230 (362)
403 3hz7_A Uncharacterized protein 29.5 89 0.003 18.3 4.6 33 19-51 28-60 (87)
404 3vc1_A Geranyl diphosphate 2-C 29.5 34 0.0012 24.8 2.6 38 77-115 184-221 (312)
405 3kux_A Putative oxidoreductase 29.4 1E+02 0.0035 22.7 5.3 41 109-149 68-112 (352)
406 1tv5_A Dhodehase, dihydroorota 29.3 81 0.0028 24.7 4.9 40 94-134 360-399 (443)
407 1mzh_A Deoxyribose-phosphate a 29.3 1.4E+02 0.0049 20.7 5.8 54 78-132 145-199 (225)
408 2rdx_A Mandelate racemase/muco 29.2 1.8E+02 0.0061 21.8 6.7 46 93-141 225-271 (379)
409 1vs1_A 3-deoxy-7-phosphoheptul 29.2 90 0.0031 22.8 4.8 72 77-151 172-270 (276)
410 3ew7_A LMO0794 protein; Q8Y8U8 29.2 1.1E+02 0.0039 20.1 5.2 31 21-51 1-31 (221)
411 1jr3_D DNA polymerase III, del 29.0 1.7E+02 0.0057 21.3 7.5 73 77-150 75-153 (343)
412 3lvj_C Sulfurtransferase TUSA; 28.8 87 0.003 18.0 5.0 32 20-51 37-68 (82)
413 2vpt_A Lipolytic enzyme; ester 28.6 1.3E+02 0.0045 20.0 5.5 39 77-117 82-129 (215)
414 3hvb_A Protein FIMX; EAL phosp 28.4 1.9E+02 0.0064 22.0 6.8 92 38-144 329-430 (437)
415 1sui_A Caffeoyl-COA O-methyltr 28.2 1.5E+02 0.0052 20.6 10.8 72 20-102 104-178 (247)
416 3dh0_A SAM dependent methyltra 28.1 1.3E+02 0.0046 19.9 5.9 67 20-102 62-131 (219)
417 4fxs_A Inosine-5'-monophosphat 28.0 2.2E+02 0.0076 22.4 11.1 99 22-135 245-361 (496)
418 3lkz_A Non-structural protein 27.9 69 0.0023 24.0 4.0 14 77-90 159-172 (321)
419 3tjx_A Dihydroorotate dehydrog 27.9 82 0.0028 23.5 4.6 49 95-145 266-321 (354)
420 3fhl_A Putative oxidoreductase 27.8 93 0.0032 23.1 4.9 43 108-150 65-111 (362)
421 3w01_A Heptaprenylglyceryl pho 27.8 1.7E+02 0.0057 20.9 6.1 57 78-138 159-215 (235)
422 3i65_A Dihydroorotate dehydrog 27.8 77 0.0026 24.7 4.4 40 94-134 332-371 (415)
423 3orh_A Guanidinoacetate N-meth 27.7 1.5E+02 0.0051 20.4 6.9 54 21-88 84-138 (236)
424 3eey_A Putative rRNA methylase 27.7 1.2E+02 0.0041 19.8 5.1 53 21-88 48-103 (197)
425 4b4u_A Bifunctional protein fo 27.7 73 0.0025 23.7 4.1 58 19-91 178-235 (303)
426 4dzz_A Plasmid partitioning pr 27.7 1.3E+02 0.0045 19.7 8.3 53 20-87 30-84 (206)
427 1zh8_A Oxidoreductase; TM0312, 27.5 92 0.0032 22.9 4.8 42 108-149 82-127 (340)
428 3ic5_A Putative saccharopine d 27.5 97 0.0033 18.1 5.3 41 19-60 4-45 (118)
429 1jdq_A TM006 protein, hypothet 27.4 1.1E+02 0.0036 18.5 4.5 30 21-50 54-83 (98)
430 3p3b_A Mandelate racemase/muco 27.3 1.9E+02 0.0064 21.9 6.6 60 78-140 226-288 (392)
431 3gr7_A NADPH dehydrogenase; fl 27.3 1E+02 0.0035 23.0 5.0 38 93-133 265-303 (340)
432 3s28_A Sucrose synthase 1; gly 27.1 2.6E+02 0.0089 23.8 7.8 62 80-151 666-727 (816)
433 4fyk_A Deoxyribonucleoside 5'- 27.0 35 0.0012 22.7 2.1 69 78-152 68-140 (152)
434 3r8r_A Transaldolase; pentose 26.9 93 0.0032 21.8 4.4 93 39-149 97-195 (212)
435 2fhp_A Methylase, putative; al 26.9 1.3E+02 0.0044 19.3 8.5 68 21-100 68-138 (187)
436 2qfm_A Spermine synthase; sper 26.9 2.1E+02 0.0072 21.8 9.6 67 21-100 212-296 (364)
437 3mn1_A Probable YRBI family ph 26.7 1.4E+02 0.0048 19.7 6.6 41 96-140 54-94 (189)
438 1sxj_A Activator 1 95 kDa subu 26.7 1.7E+02 0.0057 23.0 6.4 70 77-150 147-220 (516)
439 3njr_A Precorrin-6Y methylase; 26.6 1.5E+02 0.005 19.9 7.2 75 20-115 77-154 (204)
440 1zx0_A Guanidinoacetate N-meth 26.6 1.5E+02 0.0052 20.1 5.6 50 22-85 85-135 (236)
441 3ohs_X Trans-1,2-dihydrobenzen 26.6 99 0.0034 22.6 4.8 41 109-149 67-111 (334)
442 1a4i_A Methylenetetrahydrofola 26.6 1.2E+02 0.0042 22.5 5.2 59 18-91 163-221 (301)
443 3p2o_A Bifunctional protein fo 26.6 1.2E+02 0.0041 22.3 5.1 59 18-91 158-216 (285)
444 3m9l_A Hydrolase, haloacid deh 26.5 1.4E+02 0.0046 19.5 6.4 40 92-135 74-113 (205)
445 3o74_A Fructose transport syst 26.4 1.6E+02 0.0053 20.1 6.5 18 34-51 22-39 (272)
446 2zbt_A Pyridoxal biosynthesis 26.4 42 0.0014 24.4 2.6 42 92-136 194-237 (297)
447 3llv_A Exopolyphosphatase-rela 26.4 1.2E+02 0.004 18.7 9.8 106 21-135 7-121 (141)
448 1a5t_A Delta prime, HOLB; zinc 26.3 89 0.003 22.9 4.5 70 77-150 107-178 (334)
449 2nv1_A Pyridoxal biosynthesis 26.3 40 0.0014 24.7 2.5 39 93-134 195-235 (305)
450 1wbh_A KHG/KDPG aldolase; lyas 26.2 1.6E+02 0.0056 20.3 9.1 65 49-134 115-182 (214)
451 3ius_A Uncharacterized conserv 26.0 62 0.0021 22.7 3.5 32 19-51 4-35 (286)
452 3td9_A Branched chain amino ac 26.0 1.9E+02 0.0064 20.9 8.6 77 21-115 150-237 (366)
453 2jbm_A Nicotinate-nucleotide p 26.0 2E+02 0.0067 21.1 6.7 65 47-134 201-269 (299)
454 3kru_A NADH:flavin oxidoreduct 25.9 91 0.0031 23.4 4.5 38 93-133 265-302 (343)
455 1k1e_A Deoxy-D-mannose-octulos 25.7 1.4E+02 0.0048 19.4 9.0 41 94-138 41-81 (180)
456 3dlc_A Putative S-adenosyl-L-m 25.6 1E+02 0.0035 20.3 4.4 79 20-115 66-148 (219)
457 1mxs_A KDPG aldolase; 2-keto-3 25.6 1.7E+02 0.0059 20.4 6.5 95 36-147 19-114 (225)
458 3euw_A MYO-inositol dehydrogen 25.4 2E+02 0.0068 21.0 7.1 102 20-149 4-110 (344)
459 3ou2_A SAM-dependent methyltra 25.4 84 0.0029 20.8 4.0 74 76-150 105-194 (218)
460 1inl_A Spermidine synthase; be 25.3 1.9E+02 0.0066 20.8 9.7 69 19-102 113-193 (296)
461 2pq0_A Hypothetical conserved 25.2 1.7E+02 0.0057 20.0 7.5 54 94-151 26-94 (258)
462 3ph3_A Ribose-5-phosphate isom 25.1 1.1E+02 0.0037 20.7 4.2 117 18-149 18-158 (169)
463 1y81_A Conserved hypothetical 25.1 1.4E+02 0.0046 19.0 5.3 103 18-132 12-118 (138)
464 3igs_A N-acetylmannosamine-6-p 25.1 1.8E+02 0.0061 20.3 6.6 51 78-134 101-153 (232)
465 3ctl_A D-allulose-6-phosphate 25.0 1.8E+02 0.0062 20.4 6.6 59 78-137 128-195 (231)
466 3iwp_A Copper homeostasis prot 25.0 1.8E+02 0.006 21.5 5.7 89 31-135 139-236 (287)
467 3o26_A Salutaridine reductase; 24.9 1.8E+02 0.0062 20.4 7.5 37 19-55 11-48 (311)
468 3pfn_A NAD kinase; structural 24.7 2.3E+02 0.0079 21.5 10.4 113 19-151 37-161 (365)
469 2xw6_A MGS, methylglyoxal synt 24.7 1.4E+02 0.0049 19.2 5.0 46 76-127 72-122 (134)
470 1mxs_A KDPG aldolase; 2-keto-3 24.7 1.8E+02 0.0062 20.3 8.8 72 42-134 117-192 (225)
471 3qvo_A NMRA family protein; st 24.7 48 0.0016 22.8 2.6 32 19-50 22-54 (236)
472 3b0p_A TRNA-dihydrouridine syn 24.6 97 0.0033 23.2 4.4 39 93-134 184-222 (350)
473 1vzw_A Phosphoribosyl isomeras 24.6 1.2E+02 0.004 21.1 4.7 39 95-136 65-103 (244)
474 3g89_A Ribosomal RNA small sub 24.6 1.8E+02 0.0062 20.3 8.5 88 19-123 103-192 (249)
475 3jr2_A Hexulose-6-phosphate sy 24.6 1.2E+02 0.0039 20.9 4.6 63 81-148 61-129 (218)
476 3l07_A Bifunctional protein fo 24.5 1.4E+02 0.0049 21.9 5.2 59 18-91 159-217 (285)
477 3gcz_A Polyprotein; flavivirus 24.5 1E+02 0.0035 22.7 4.3 58 76-149 154-214 (282)
478 2nyd_A UPF0135 protein SA1388; 24.3 2.2E+02 0.0074 21.7 6.3 59 90-148 251-319 (370)
479 1nmo_A Hypothetical protein YB 24.3 1.3E+02 0.0045 21.3 4.9 59 90-148 136-204 (247)
480 3k9c_A Transcriptional regulat 24.2 1.8E+02 0.0063 20.2 7.4 18 34-51 31-48 (289)
481 3hv8_A Protein FIMX; EAL phosp 23.9 1.1E+02 0.0037 21.5 4.5 92 38-144 160-261 (268)
482 1vgv_A UDP-N-acetylglucosamine 23.8 2.1E+02 0.0072 20.7 8.2 40 108-152 301-340 (384)
483 1vmd_A MGS, methylglyoxal synt 23.7 1.8E+02 0.0061 19.8 5.7 32 76-111 96-132 (178)
484 1wbh_A KHG/KDPG aldolase; lyas 23.7 1.8E+02 0.0063 20.0 7.2 63 78-146 41-103 (214)
485 3mb5_A SAM-dependent methyltra 23.5 1.6E+02 0.0055 20.1 5.2 25 20-44 118-142 (255)
486 2y88_A Phosphoribosyl isomeras 23.5 1.3E+02 0.0043 20.8 4.7 39 95-136 64-102 (244)
487 2vvp_A Ribose-5-phosphate isom 23.4 1.2E+02 0.004 20.4 4.1 31 21-51 4-36 (162)
488 4fb5_A Probable oxidoreductase 23.4 1.2E+02 0.0041 22.3 4.8 42 108-149 94-139 (393)
489 1b0a_A Protein (fold bifunctio 23.4 90 0.0031 23.0 3.9 58 18-90 157-214 (288)
490 2pyy_A Ionotropic glutamate re 23.3 1.6E+02 0.0054 19.1 6.7 49 19-86 111-159 (228)
491 3kjx_A Transcriptional regulat 23.2 2.1E+02 0.0072 20.5 10.7 65 32-114 86-153 (344)
492 3gdo_A Uncharacterized oxidore 23.1 1.5E+02 0.0052 21.9 5.3 41 109-149 66-110 (358)
493 1zco_A 2-dehydro-3-deoxyphosph 23.1 2.1E+02 0.0072 20.5 7.3 72 77-151 157-255 (262)
494 4gx0_A TRKA domain protein; me 23.1 2.8E+02 0.0096 21.9 8.6 53 77-136 191-243 (565)
495 3hgj_A Chromate reductase; TIM 23.0 93 0.0032 23.3 4.1 38 93-133 276-314 (349)
496 1ka9_H Imidazole glycerol phos 23.0 91 0.0031 20.9 3.7 32 21-52 3-34 (200)
497 3l5l_A Xenobiotic reductase A; 23.0 96 0.0033 23.4 4.2 37 93-132 283-320 (363)
498 4h83_A Mandelate racemase/muco 22.9 2.3E+02 0.0078 21.4 6.3 56 78-138 234-292 (388)
499 2o3a_A UPF0106 protein AF_0751 22.9 1.8E+02 0.0063 19.7 5.9 62 21-102 34-97 (178)
500 3s1x_A Probable transaldolase; 22.8 1.4E+02 0.0047 21.1 4.7 84 39-138 99-189 (223)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.96 E-value=1.2e-28 Score=167.02 Aligned_cols=121 Identities=31% Similarity=0.576 Sum_probs=110.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
++++||||||++..+..++.+|+..||. +..+.++.+|++.+. .+.||+||+|+.||+++|++++
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~--------------~~~~DlillD~~MP~mdG~el~ 76 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--------------KGDFDFVVTDWNMPGMQGIDLL 76 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH--------------HHCCSEEEEESCCSSSCHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH--------------hCCCCEEEEcCCCCCCCHHHHH
Confidence 4578999999999999999999999985 778999999999884 3469999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhcC
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLIN 153 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~~ 153 (153)
++||+....+++|||++|+..+.+...++++.|+++||.||+++++|.+.+.++++
T Consensus 77 ~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 77 KNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp HHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99998666678999999999999999999999999999999999999998888653
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.93 E-value=1.7e-24 Score=143.12 Aligned_cols=118 Identities=38% Similarity=0.503 Sum_probs=108.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++++
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~--------------~~~~dlvllD~~~p~~~g~~~~~~l 68 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--------------EFTPDLIVLXIMMPVMDGFTVLKKL 68 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT--------------TBCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH--------------hcCCCEEEEeccCCCCcHHHHHHHH
Confidence 58999999999999999999999999999999999999883 4579999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
|+....+.+|+|++|+..+.....++++.|+++|+.||++++++...+.+++
T Consensus 69 ~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 69 QEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp HTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 9765456899999999999999999999999999999999999999888765
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.92 E-value=8.9e-24 Score=142.06 Aligned_cols=119 Identities=24% Similarity=0.459 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvl~D~~lp~~~g~~~~~ 68 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY--------------KNLPDALICDVLLPGIDGYTLCK 68 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHH
Confidence 4578999999999999999999999999999999999999873 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++|+....+.+|+|++|+..+.....++++.|+++|+.||++.++|...+.++
T Consensus 69 ~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 69 RVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 121 (136)
T ss_dssp HHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHH
T ss_pred HHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 99975444678999999998888889999999999999999999999887765
No 4
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.91 E-value=1.1e-25 Score=150.20 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=99.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
+.++||||||++..+..++.+|+..||++. .+.++.+|++.+. .++||+||+|+.||+++|++++
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~--------------~~~~DlvllDi~mP~~~G~el~ 72 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR--------------KGQFDIAIIDVNLDGEPSYPVA 72 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH--------------HCCSSEEEECSSSSSCCSHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------------hCCCCEEEEecCCCCCCHHHHH
Confidence 457899999999999999999999999975 7899999999883 3579999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++|+. ++|||++|+..+... +.+.|+++||.||+++++|...+.++.
T Consensus 73 ~~lr~~----~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 73 DILAER----NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp HHHHHT----CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred HHHHcC----CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 999973 589999998765543 346799999999999999999998864
No 5
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.91 E-value=6.7e-23 Score=136.37 Aligned_cols=120 Identities=31% Similarity=0.553 Sum_probs=106.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.++|||+||++..+..++.+|+..|+. +..+.++.+++..+. ....||+||+|+.||+++|+++++
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-------------~~~~~dlvi~D~~~p~~~g~~~~~ 71 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLD-------------ANADTKVLITDWNMPEMNGLDLVK 71 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-------------HCTTCCEEEECSCCSSSCHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHH-------------hCCCCCEEEEeCCCCCCCHHHHHH
Confidence 468999999999999999999999985 889999999988763 123689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++|+....+.+|+|++|+..+.....++++.|+++|+.||++++++...+..++
T Consensus 72 ~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 72 KVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp HHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 999755446899999999999999999999999999999999999999888754
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.91 E-value=4.9e-23 Score=135.51 Aligned_cols=116 Identities=21% Similarity=0.372 Sum_probs=105.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+...|+..||.+..+.++.++++.+. ..+||+||+|+.||+++|++++++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlii~D~~~p~~~g~~~~~~ 67 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE--------------ELQPDLILLDIMLPNKDGVEVCRE 67 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------TTCCSEEEEETTSTTTHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh--------------hCCCCEEEEeCCCCCCCHHHHHHH
Confidence 358999999999999999999999999999999999999873 457999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+|+. ..+|+|++|+..+.....++++.|+++|+.||++.+++...+.+.+
T Consensus 68 lr~~---~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 68 VRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp HHTT---CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHhc---CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 9974 3689999999988888899999999999999999999998887753
No 7
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.90 E-value=8.9e-23 Score=138.35 Aligned_cols=121 Identities=29% Similarity=0.512 Sum_probs=104.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+.++|||+||++..+..++.+|+..|+.+..+.++.++++.+. ...||+||+|+.||+++|++++
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvl~D~~mp~~~g~~~~ 77 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA--------------EEDYDAVIVDLHMPGMNGLDML 77 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH--------------HSCCSEEEEESCCSSSCHHHHH
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHH
Confidence 45579999999999999999999999999999999999998873 3569999999999999999999
Q ss_pred HHHHhc--cCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKES--SVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~--~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++|+. ...+.+|+|++|+..+.+...++++.|+++||.||++.++|...+.++.
T Consensus 78 ~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 78 KQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 999853 2235689999999989999999999999999999999999999887753
No 8
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.90 E-value=1.4e-22 Score=135.67 Aligned_cols=123 Identities=24% Similarity=0.422 Sum_probs=105.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+|||+||++..+..++.+|+..|+ .+..+.++.+++..+..... ....||+||+|+.||+++|+++++
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~---------~~~~~dlvllD~~mp~~~G~~~~~ 72 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS---------KGENYNMIFMDVQMPKVDGLLSTK 72 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH---------HTCCCSEEEECSCCSSSCHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh---------cCCCCCEEEEeCCCCCCChHHHHH
Confidence 35799999999999999999998887 58889999999987742110 124699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+|+.. .+.+|+|++|+..+.....++++.|+++|+.||++.+++.+.+.+++
T Consensus 73 ~lr~~~-~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 125 (133)
T 2r25_B 73 MIRRDL-GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFC 125 (133)
T ss_dssp HHHHHS-CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHhhc-CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 999632 24689999999988888999999999999999999999999888754
No 9
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.90 E-value=4.8e-23 Score=145.33 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=107.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
++..+||||||++..+..+..+|+..||.+..+.++.++++.+. ...||+||+|+.||+++|++++
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvl~D~~lp~~~g~~~~ 70 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG--------------AEKFEFITVXLHLGNDSGLSLI 70 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT--------------TSCCSEEEECSEETTEESHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------hCCCCEEEEeccCCCccHHHHH
Confidence 35678999999999999999999999999999999999999883 4679999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++++.. +.+|||++|+..+.+...++++.|+++|+.||++.++|...+.++
T Consensus 71 ~~l~~~~--~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 71 APLCDLQ--PDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTN 122 (184)
T ss_dssp HHHHHHC--TTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTT
T ss_pred HHHHhcC--CCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHH
Confidence 9999864 689999999999999999999999999999999999999877654
No 10
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.90 E-value=4.4e-22 Score=131.64 Aligned_cols=117 Identities=23% Similarity=0.332 Sum_probs=106.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvi~D~~l~~~~g~~~~~ 67 (126)
T 1dbw_A 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP--------------DVRNGVLVTDLRMPDMSGVELLR 67 (126)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG--------------GCCSEEEEEECCSTTSCHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--------------cCCCCEEEEECCCCCCCHHHHHH
Confidence 3568999999999999999999988999999999999998773 35689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 68 ~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 118 (126)
T 1dbw_A 68 NLGDLK--INIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERA 118 (126)
T ss_dssp HHHHTT--CCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhcC--CCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHH
Confidence 999754 678999999998888899999999999999999999999888765
No 11
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.90 E-value=4.5e-22 Score=136.33 Aligned_cols=119 Identities=28% Similarity=0.474 Sum_probs=108.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..||.+..+.++.+++..+. ..+||+||+|+.||+++|+++++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~dlii~D~~l~~~~g~~~~~ 71 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS--------------LTRPDLIISDVLMPEMDGYALCR 71 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT--------------TCCCSEEEEESCCSSSCHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHH
Confidence 3578999999999999999999999999999999999999883 46799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.|++....+.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 72 ~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (154)
T 3gt7_A 72 WLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRL 124 (154)
T ss_dssp HHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 99986544689999999999999999999999999999999999999888765
No 12
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.90 E-value=4.2e-22 Score=132.24 Aligned_cols=119 Identities=28% Similarity=0.483 Sum_probs=102.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ..+||+||+|+.+|+.+|++++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvi~d~~l~~~~g~~~~ 70 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--------------GFTPDLMICDIAMPRMNGLKLL 70 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT--------------TCCCSEEEECCC-----CHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh--------------cCCCCEEEEecCCCCCCHHHHH
Confidence 35679999999999999999999999999999999999999883 4679999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCC-ChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPL-KPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~-~~~~l~~~~~~~~ 152 (153)
+.+++.. +.+|+|++|+..+.....++++.|+++|+.||+ +.+++.+.+.+++
T Consensus 71 ~~l~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 71 EHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp HHHHHTT--CCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred HHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 9999854 689999999999999889999999999999999 8999999888764
No 13
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.89 E-value=3.9e-22 Score=131.38 Aligned_cols=117 Identities=25% Similarity=0.440 Sum_probs=106.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..++..|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--------------~~~~dlvl~D~~l~~~~g~~~~~~ 68 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--------------KERPDLVLLDMKIPGMDGIEILKR 68 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--------------HHCCSEEEEESCCTTCCHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh--------------ccCCCEEEEecCCCCCCHHHHHHH
Confidence 468999999999999999999998999999999999998873 235899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 69 l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 69 MKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp HHHHC--TTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred HHHhC--CCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 99754 5789999999888888899999999999999999999999888754
No 14
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.89 E-value=1.4e-21 Score=129.31 Aligned_cols=119 Identities=34% Similarity=0.534 Sum_probs=105.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
+.++|||+||++..+..++..|+..|+ .+..+.++.+++..+. ...||++++|+.||+++|++++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~--------------~~~~dlvi~D~~l~~~~g~~l~ 68 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--------------AGGYGFVISDWNMPNMDGLELL 68 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT--------------TCCCCEEEEESCCSSSCHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHH
Confidence 456899999999999999999998888 7899999999998873 4569999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++....+.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~ 122 (128)
T 1jbe_A 69 KTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122 (128)
T ss_dssp HHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHH
Confidence 999974444678999999998888899999999999999999999999888764
No 15
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.89 E-value=3.7e-22 Score=134.22 Aligned_cols=120 Identities=19% Similarity=0.320 Sum_probs=109.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCcEEEEecCHHHHHHHhchhhhHHhhhhcccCC-CcccEEEEeCCCC-CCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN-SACKVTTAENGMRALEFLGLVDEQEQQNNLNSNG-TKVNLVITDYCMP-GMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~dlii~D~~~~-~~~g~~ 95 (153)
+..+|||+||++..+..++.+|+. .|+.+..+.++.+++..+. . ..||+||+|+.|| +++|++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~--------------~~~~~dlvi~D~~l~~~~~g~~ 68 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK--------------DLDSITLIIMDIAFPVEKEGLE 68 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT--------------TCCCCSEEEECSCSSSHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh--------------cCCCCcEEEEeCCCCCCCcHHH
Confidence 357899999999999999999998 8999999999999998873 4 6799999999999 999999
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++.||+....+.+|+|++|+..+.....++++.|+++||.||++.++|...+.+++
T Consensus 69 ~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 69 VLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 999999833346899999999999999999999999999999999999999888764
No 16
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.89 E-value=1.2e-21 Score=133.80 Aligned_cols=119 Identities=22% Similarity=0.356 Sum_probs=108.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+..+|||+||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.+|+++|++++
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvi~D~~l~~~~g~~~~ 77 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA--------------SREVDLVISAAHLPQMDGPTLL 77 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH--------------HSCCSEEEEESCCSSSCHHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH--------------cCCCCEEEEeCCCCcCcHHHHH
Confidence 34679999999999999999999999999999999999999883 3569999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-CcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.|++.. +.+|+|++++..+.....++++.| +++||.||++.++|...+.+++
T Consensus 78 ~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 78 ARIHQQY--PSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp HHHHHHC--TTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHhHC--CCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 9999854 689999999999999999999999 9999999999999998887753
No 17
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.89 E-value=7.5e-22 Score=131.74 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=105.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..++.+|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvl~D~~l~~~~g~~~~~~ 68 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE--------------NEFFNLALFXIKLPDMEGTELLEK 68 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEECSBCSSSBHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh--------------cCCCCEEEEecCCCCCchHHHHHH
Confidence 468999999999999999999988999999999999998873 246899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 l~~~~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 118 (132)
T 3crn_A 69 AHKLR--PGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEK 118 (132)
T ss_dssp HHHHC--TTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHhhC--CCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHH
Confidence 99754 578999999998888889999999999999999999999887764
No 18
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.89 E-value=3.5e-22 Score=134.00 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=107.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~~ 96 (153)
+..+|||+||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.+|+ ++|+++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvi~D~~l~~~~~~g~~~ 70 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI--------------SDDAIGMIIEAHLEDKKDSGIEL 70 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC--------------CTTEEEEEEETTGGGBTTHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh--------------ccCCCEEEEeCcCCCCCccHHHH
Confidence 4578999999999999999999999999999999999988773 467999999999999 999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++++++.. +.+|+|++|+..+.....++++.|+++||.||++.++|...+.++.
T Consensus 71 ~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 124 (136)
T 3kto_A 71 LETLVKRG--FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQII 124 (136)
T ss_dssp HHHHHHTT--CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHH
T ss_pred HHHHHhCC--CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHH
Confidence 99999864 6899999999999999999999999999999999999999888753
No 19
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.89 E-value=7e-23 Score=137.15 Aligned_cols=118 Identities=18% Similarity=0.114 Sum_probs=108.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcC-cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSA-CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
+..+|||+||++..+..++.+|+..| |.+..+.++.+++..+ ....||+||+|+.+|+++|++++
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l--------------~~~~~dlvi~D~~l~~~~g~~~~ 78 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPP--------------ADTRPGIVILDLGGGDLLGKPGI 78 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCC--------------TTCCCSEEEEEEETTGGGGSTTH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHH--------------hccCCCEEEEeCCCCCchHHHHH
Confidence 44689999999999999999999999 9999999999998877 34679999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.+|+.. +.+|+|++|+..+.....++++.|+++|+.||++.++|...+.+++
T Consensus 79 ~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 79 VEARALW--ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp HHHHGGG--TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC
T ss_pred HHHHhhC--CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHh
Confidence 9999865 5899999999999999999999999999999999999999988764
No 20
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.89 E-value=7.3e-22 Score=129.25 Aligned_cols=117 Identities=26% Similarity=0.434 Sum_probs=105.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+|||+||++..+..++..|+..|+. +..+.++.+++..+. ...||++++|+.||+++|+++++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~--------------~~~~dlil~D~~l~~~~g~~~~~ 67 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK--------------ELKPDIVTMDITMPEMNGIDAIK 67 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------------HHCCSEEEEECSCGGGCHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH--------------hcCCCEEEEeCCCCCCcHHHHHH
Confidence 368999999999999999999988998 568999999998873 23589999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 68 ~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 68 EIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp HHHHHC--TTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred HHHhhC--CCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 999754 5789999999988888899999999999999999999999988764
No 21
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.88 E-value=6.1e-22 Score=130.20 Aligned_cols=118 Identities=24% Similarity=0.417 Sum_probs=100.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..++..|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~--------------~~~~dlvi~D~~l~~~~g~~~~~~l 67 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR--------------ENKPDLILMDIQLPEISGLEVTKWL 67 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH--------------HHCCSEEEEESBCSSSBHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999988773 2358999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++....+.+|+|++|+..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 68 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 68 KEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 119 (124)
T ss_dssp HHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHH
T ss_pred HcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 9854346789999999888888889999999999999999999998887754
No 22
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.88 E-value=2.3e-21 Score=131.92 Aligned_cols=126 Identities=27% Similarity=0.455 Sum_probs=106.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..++..|+..|+ .+..+.++.+++..+..... ..+...||+||+|+.||+++|+++
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~-------~~~~~~~dlillD~~lp~~~g~~l 79 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGE-------YENSPRPNLILLDLNLPKKDGREV 79 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGG-------GTTCCCCSEEEECSCCSSSCHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccc-------cccCCCCCEEEEeCCCCCCcHHHH
Confidence 346899999999999999999998776 78899999999988731000 000246999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.|++....+.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 80 ~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 80 LAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp HHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 9999985434578999999988888889999999999999999999999887764
No 23
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.88 E-value=1e-21 Score=130.12 Aligned_cols=118 Identities=22% Similarity=0.424 Sum_probs=105.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+|||+||++..+..+...|+..|+ .+..+.++.+++..+. ...||++|+|+.||+++|+++++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~--------------~~~~dlvl~D~~l~~~~g~~~~~ 71 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA--------------QNPHHLVISDFNMPKMDGLGLLQ 71 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH--------------TSCCSEEEECSSSCSSCHHHHHH
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH--------------cCCCCEEEEeCCCCCCCHHHHHH
Confidence 46899999999999999999998888 7889999999998873 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++....+.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 72 ~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (129)
T 1p6q_A 72 AVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAV 124 (129)
T ss_dssp HHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHH
T ss_pred HHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 99975434678999999988888889999999999999999999999888764
No 24
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.88 E-value=4.7e-22 Score=131.50 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=105.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.+|+++|+++++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlii~D~~l~~~~g~~~~~ 67 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS--------------TRGYDAVFIDLNLPDTSGLALVK 67 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH--------------HSCCSEEEEESBCSSSBHHHHHH
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 3568999999999999999999999999999999999999883 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+|+....+.+|+|++++..+... .+++..|+++|+.||++.++|.+.+.+.
T Consensus 68 ~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 119 (127)
T 3i42_A 68 QLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSI 119 (127)
T ss_dssp HHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHh
Confidence 999864346899999999887777 7899999999999999999999888764
No 25
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.88 E-value=2.1e-21 Score=130.78 Aligned_cols=119 Identities=23% Similarity=0.371 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..++.+|+..|+.+..+.+..+++..+.. ....||+||+|+.+|+.+|+++++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~------------~~~~~dlvi~d~~l~~~~g~~~~~ 69 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE------------NCNSIDVVITDMKMPKLSGMDILR 69 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH------------TTTTCCEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh------------CCCCCCEEEEeCCCCCCcHHHHHH
Confidence 45789999999999999999999999999999999999988731 135799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 70 ~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 70 EIKKIT--PHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp HHHHHC--TTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHhC--CCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 999864 689999999998888899999999999999999999999888765
No 26
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.88 E-value=2.1e-21 Score=132.21 Aligned_cols=118 Identities=26% Similarity=0.347 Sum_probs=107.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++|||+||++..+..+..+|+..+ +.+..+.++.+++..+. ...||+||+|+.+|+.+|+++
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--------------~~~~dlii~D~~l~~~~g~~~ 84 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE--------------KESVDIAILDVEMPVKTGLEV 84 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT--------------TSCCSEEEECSSCSSSCHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh--------------ccCCCEEEEeCCCCCCcHHHH
Confidence 44789999999999999999999877 78999999999999883 467999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++.|++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 85 ~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 85 LEWIRSEK--LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp HHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 99999854 6899999999999999999999999999999999999999888764
No 27
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.88 E-value=2e-21 Score=127.14 Aligned_cols=115 Identities=22% Similarity=0.359 Sum_probs=104.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.||+++|+++++.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~--------------~~~~dlil~D~~l~~~~g~~~~~~l 66 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN--------------EHIPDIAIVDLGLPDEDGLSLIRRW 66 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh--------------ccCCCEEEEecCCCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999998873 3468999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 67 ~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 115 (121)
T 2pl1_A 67 RSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 (121)
T ss_dssp HHTT--CCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhcC--CCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHH
Confidence 9754 578999999998888889999999999999999999999887764
No 28
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.88 E-value=1e-21 Score=134.92 Aligned_cols=120 Identities=27% Similarity=0.403 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
+..+|||+||++..+..+..+|+..|+.+. .+.+..+++..+... ...||+||+|+.||+++|++++
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~------------~~~~dliilD~~l~~~~g~~~~ 102 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH------------YPNIDIVTLXITMPKMDGITCL 102 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH------------GGGCCEEEECSSCSSSCHHHHH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc------------CCCCCEEEEeccCCCccHHHHH
Confidence 346899999999999999999999999988 999999999988421 1158999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.|++.. +.+|+|++++..+.....++++.|+++||.||++.++|...+.+++
T Consensus 103 ~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 103 SNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HHHHHHC--TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred HHHHhhC--CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 9999865 6899999999999999999999999999999999999999998865
No 29
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.88 E-value=1.7e-21 Score=131.57 Aligned_cols=120 Identities=21% Similarity=0.389 Sum_probs=107.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcE--EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACK--VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..+..+|+..|+. +..+.++.+++..+. ...||+||+|+.+|+++|+++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--------------~~~~dlii~D~~l~~~~g~~~ 69 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ--------------QAKYDLIILDIGLPIANGFEV 69 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT--------------TCCCSEEEECTTCGGGCHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh--------------cCCCCEEEEeCCCCCCCHHHH
Confidence 4578999999999999999999998887 889999999999883 467999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCC-ChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPL-KPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~-~~~~l~~~~~~~~ 152 (153)
++.||+....+.+|+|++++..+.....++++.|+++|+.||+ +.+++...+.+++
T Consensus 70 ~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 70 MSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp HHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 9999984444789999999999999999999999999999999 9999998887753
No 30
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.88 E-value=2e-21 Score=132.42 Aligned_cols=127 Identities=22% Similarity=0.463 Sum_probs=108.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+|||+||++..+..+...|+..|+ .+..+.++.+++..+..... ........||+||+|+.||+++|++++
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~-----~~~~~~~~~dliilD~~l~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK-----SGRVSAGRAQLVLLDLNLPDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS-----SSGGGTTCBEEEEECSBCSSSBHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc-----ccccccCCCCEEEEeCCCCCCcHHHHH
Confidence 47899999999999999999999988 89999999999998731100 000013579999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.||+....+.+|+|++|+..+.....++++.|+++||.||++.++|...+.++
T Consensus 79 ~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 999985445789999999999988899999999999999999999999988775
No 31
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.88 E-value=2.4e-21 Score=129.50 Aligned_cols=120 Identities=26% Similarity=0.404 Sum_probs=107.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..++.+|+..|+.+..+.+..+++..+.. ...||+||+|+.+|+.+|+++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-------------~~~~dlvi~D~~l~~~~g~~~~~ 72 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY-------------QKRIGLMITDLRMQPESGLDLIR 72 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH-------------CTTEEEEEECSCCSSSCHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh-------------CCCCcEEEEeccCCCCCHHHHHH
Confidence 45789999999999999999999999999999999999887731 23499999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++.. .+.+|+|++++..+.....++++.|+++|+.||++.++|...+.+..
T Consensus 73 ~l~~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 73 TIRASE-RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HHHTST-TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 999853 36899999999999989999999999999999999999999888753
No 32
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.88 E-value=3e-21 Score=126.84 Aligned_cols=115 Identities=26% Similarity=0.486 Sum_probs=104.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..++..|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--------------~~~~dlvi~D~~l~~~~g~~~~~~ 68 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--------------EYDINLVIMDINLPGKNGLLLARE 68 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--------------HSCCSEEEECSSCSSSCHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh--------------cCCCCEEEEcCCCCCCCHHHHHHH
Confidence 468999999999999999999988999999999999998873 346999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 l~~~---~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 117 (123)
T 1xhf_A 69 LREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 (123)
T ss_dssp HHHH---CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHhC---CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 9975 478999999988888889999999999999999999998877664
No 33
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.2e-21 Score=144.25 Aligned_cols=118 Identities=25% Similarity=0.376 Sum_probs=107.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+.++|||+||++..+..+..+|+..||.+..+.++.++++.+. ...||+||+|+.||+++|++++
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvllD~~lp~~~g~~~~ 86 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR--------------ETRPDAVILDVXMPGMDGFGVL 86 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HHCCSEEEEESCCSSSCHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHH
Confidence 35689999999999999999999999999999999999999873 2469999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++||+.. +.+|+|++|+..+.....++++.|+++|+.||++.++|...+..+
T Consensus 87 ~~lr~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~ 138 (250)
T 3r0j_A 87 RRLRADG--IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 138 (250)
T ss_dssp HHHHHTT--CCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHhcC--CCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Confidence 9999864 578999999999999999999999999999999999998877664
No 34
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.88 E-value=4.7e-21 Score=127.98 Aligned_cols=125 Identities=24% Similarity=0.418 Sum_probs=107.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.++|||+||++..+..+...|+..|+ .+..+.++.+++..+..... ......||+||+|+.+|+++|++++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~-------~~~~~~~dlvi~d~~~~~~~g~~~~ 74 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGE-------YANASRPDLILLXLNLPKKDGREVL 74 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGG-------GGSCCCCSEEEECSSCSSSCHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccc-------cccCCCCcEEEEecCCCcccHHHHH
Confidence 46899999999999999999999888 89999999999998831000 0001579999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++....+.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 128 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGI 128 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHH
Confidence 999985433578999999998888899999999999999999999999888765
No 35
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.88 E-value=1.4e-21 Score=130.50 Aligned_cols=117 Identities=21% Similarity=0.378 Sum_probs=103.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+|||+||++..+..+..+|+..+ +.+..+.++.+++..+. ...||++|+|+.||+++|++++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~--------------~~~~dlvilD~~lp~~~g~~~~ 68 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE--------------EYNPNVVILDIEMPGMTGLEVL 68 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH--------------HHCCSEEEECSSCSSSCHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh--------------hcCCCEEEEecCCCCCCHHHHH
Confidence 3579999999999999999999776 56778999999998873 2358999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.+++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 69 ~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 121 (133)
T 3b2n_A 69 AEIRKKH--LNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVN 121 (133)
T ss_dssp HHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 9999753 6899999999988888999999999999999999999999887753
No 36
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.88 E-value=1.8e-21 Score=144.57 Aligned_cols=120 Identities=25% Similarity=0.400 Sum_probs=107.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+...|+..|+.+..+.++.++++.+.. ...||+||+|+.||+++|+++++
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~-------------~~~~dlvllD~~mP~~dG~~l~~ 189 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ-------------HPAIRLVLVDYYMPEIDGISLVR 189 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-------------CTTEEEEEECSCCSSSCHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-------------CCCCCEEEEcCCCCCCCHHHHHH
Confidence 35789999999999999999999999999999999999998731 22489999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+||+......+|||++|+..+.....++++.|+++||.||+++++|...+.++
T Consensus 190 ~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 242 (259)
T 3luf_A 190 MLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHN 242 (259)
T ss_dssp HHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHH
Confidence 99986544578999999998888889999999999999999999998877764
No 37
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.88 E-value=4.3e-22 Score=133.81 Aligned_cols=120 Identities=16% Similarity=0.273 Sum_probs=106.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvi~d~~l~~~~g~~~~~ 70 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA--------------RRPYAAMTVDLNLPDQDGVSLIR 70 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH--------------HSCCSEEEECSCCSSSCHHHHHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHH
Confidence 4578999999999999999999999999999999999999883 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHH-HHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRIN-ECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~-~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++....+.+|+|++++..+..... ++++.|+++|+.||++.++|...+.+++
T Consensus 71 ~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l 125 (140)
T 3grc_A 71 ALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAI 125 (140)
T ss_dssp HHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 99974334689999999876666666 7899999999999999999998887753
No 38
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.88 E-value=1.2e-21 Score=131.10 Aligned_cols=118 Identities=24% Similarity=0.383 Sum_probs=107.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..++.+..+.++.+++..+. ...||+||+|+.+|+.+|+++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~--------------~~~~dlvi~d~~l~~~~g~~~~~ 71 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG--------------LHAPDVIITDIRMPKLGGLEMLD 71 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH--------------HHCCSEEEECSSCSSSCHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh--------------ccCCCEEEEeCCCCCCCHHHHHH
Confidence 3578999999999999999999998999999999999999884 24699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++.. +.+|+|++++..+.....++++.|+++|+.||++.++|.+.+.+++
T Consensus 72 ~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 72 RIKAGG--AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHHHTT--CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred HHHhcC--CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 999864 6889999999988889999999999999999999999999888764
No 39
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.88 E-value=4.5e-21 Score=125.81 Aligned_cols=114 Identities=21% Similarity=0.357 Sum_probs=103.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvi~d~~l~~~~g~~~~~~l 68 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ--------------NQSVDLILLDINLPDENGLMLTRAL 68 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh--------------cCCCCEEEEeCCCCCCChHHHHHHH
Confidence 57999999999999999999988999999999999988773 2468999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++ . +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~~-~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 116 (122)
T 1zgz_A 69 RE-R--STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 (122)
T ss_dssp HT-T--CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred Hh-c--CCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHH
Confidence 97 3 578999999988888889999999999999999999999877764
No 40
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.87 E-value=3.3e-21 Score=129.89 Aligned_cols=124 Identities=20% Similarity=0.329 Sum_probs=108.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..+..+|+..|+ .+..+.++.+++..+.... .....||+||+|+.||+++|+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~---------~~~~~~dlvi~D~~l~~~~g~~~ 78 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY---------AAGRWPSIICIDINMPGINGWEL 78 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH---------TSSCCCSEEEEESSCSSSCHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh---------ccCCCCCEEEEcCCCCCCCHHHH
Confidence 457899999999999999999999998 8999999999999884210 11257999999999999999999
Q ss_pred HHHHHhcc--CCCCCcEEEEeCCCChhhHHHHHHhc-CcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESS--VMKEVPVVVVSSENIPTRINECLEEG-AQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~--~~~~~pii~~t~~~~~~~~~~a~~~g-a~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.|++.. ..+.+|+|++++..+.....+++..| +++||.||++.++|...+.+.
T Consensus 79 ~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 79 IDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKV 136 (146)
T ss_dssp HHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHH
Confidence 99999832 33688999999999999999999999 999999999999999998875
No 41
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.87 E-value=6.1e-21 Score=126.78 Aligned_cols=118 Identities=23% Similarity=0.404 Sum_probs=100.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|++.|+.+..+.++.+++..+. ...||+||+|+.+|+++|+++++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlii~d~~l~~~~g~~~~~ 70 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS--------------TFEPAIMTLDLSMPKLDGLDVIR 70 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HTCCSEEEEESCBTTBCHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH--------------hcCCCEEEEecCCCCCCHHHHHH
Confidence 4578999999999999999999999999999999999998873 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+|+....+..+|++++... .....++++.|+++|+.||++.+++...+.+.
T Consensus 71 ~l~~~~~~~~~~ii~~~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 71 SLRQNKVANQPKILVVSGLD-KAKLQQAVTEGADDYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp HHHTTTCSSCCEEEEECCSC-SHHHHHHHHHTCCEEECSSCCHHHHHHHHHHH
T ss_pred HHHhcCccCCCeEEEEeCCC-hHHHHHHHHhChHHHhhCCCCHHHHHHHHHHH
Confidence 99975432345565555544 44778899999999999999999999888774
No 42
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.87 E-value=2e-21 Score=129.34 Aligned_cols=118 Identities=27% Similarity=0.404 Sum_probs=100.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..++.+|+ .++.+..+.++.+++..+. ..+||+||+|+.+|+++|+++++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~--------------~~~~dlvi~d~~l~~~~g~~~~~ 67 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL--------------AHPPDVLISDVNMDGMDGYALCG 67 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH--------------HSCCSEEEECSSCSSSCHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHH
Confidence 35789999999999999999998 7899999999999999873 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+++....+.+|+|++++..+... .++++.|+++|+.||++.++|...+.+++
T Consensus 68 ~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 120 (133)
T 3nhm_A 68 HFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALL 120 (133)
T ss_dssp HHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHH
Confidence 999865446899999999877766 78999999999999999999999888754
No 43
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.87 E-value=9.1e-22 Score=133.20 Aligned_cols=123 Identities=10% Similarity=0.168 Sum_probs=108.3
Q ss_pred CCCCCCCeEEEEeCCHHHHHHHHHHHHhcC-cEEEEecCHHHHHHHhchhhhHHhhhhcccCC-CcccEEEEeCCCCCCC
Q 042079 15 SSNPKPPHVLAVDDSIVDRKIVENLLKNSA-CKVTTAENGMRALEFLGLVDEQEQQNNLNSNG-TKVNLVITDYCMPGMT 92 (153)
Q Consensus 15 ~~~~~~~~iLiidd~~~~~~~l~~~l~~~~-~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~dlii~D~~~~~~~ 92 (153)
....+..+|||+||++..+..+..+|+..| |.+..+.++.+++..+. .. ..||+||+|+.||+++
T Consensus 15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~-------------~~~~~~dlvi~D~~l~~~~ 81 (146)
T 4dad_A 15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRT-------------DGLDAFDILMIDGAALDTA 81 (146)
T ss_dssp CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCH-------------HHHTTCSEEEEECTTCCHH
T ss_pred CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH-------------hcCCCCCEEEEeCCCCCcc
Confidence 333456899999999999999999999988 99999999998877652 12 4699999999999999
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
|+++++.+++.. +.+|+|++++..+.....++++.|+++||.||++.++|...+.+++
T Consensus 82 g~~~~~~l~~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 139 (146)
T 4dad_A 82 ELAAIEKLSRLH--PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAA 139 (146)
T ss_dssp HHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHH
Confidence 999999999865 6899999999999999999999999999999999999999887753
No 44
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.87 E-value=3.1e-21 Score=138.57 Aligned_cols=132 Identities=23% Similarity=0.376 Sum_probs=105.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
....+||||||++..+..+..+|+..|+ .+..+.++.++++.+.......+ .........||+||+|+.||+++|+++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~-~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQRE-EQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHH-HHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhccccc-ccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 3557999999999999999999999998 89999999999998842100000 000011246999999999999999999
Q ss_pred HHHHHhccC--CCCCcEEEEeCCC-ChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSV--MKEVPVVVVSSEN-IPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~--~~~~pii~~t~~~-~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++||+... .+.+|||++|+.. +.....++++.|+++||.||++ +|...+.+++
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l 194 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIE 194 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC
T ss_pred HHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHH
Confidence 999997421 2578999999987 7788889999999999999999 8888877754
No 45
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.87 E-value=2.8e-21 Score=129.91 Aligned_cols=115 Identities=23% Similarity=0.407 Sum_probs=104.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..++.+|+..||.+..+.++.+++..+. ...||++|+|+.||+++|+++++.|
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvllD~~l~~~~g~~l~~~l 70 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE--------------RSKPQLIILDLKLPDMSGEDVLDWI 70 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH--------------HHCCSEEEECSBCSSSBHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH--------------hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 48999999999999999999988999999999999998873 2368999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 71 ~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 119 (137)
T 3cfy_A 71 NQND--IPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALH 119 (137)
T ss_dssp HHTT--CCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhcC--CCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHH
Confidence 9754 578999999988888889999999999999999999999887764
No 46
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.87 E-value=8.7e-22 Score=129.96 Aligned_cols=117 Identities=22% Similarity=0.389 Sum_probs=105.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.+|+++|+++++++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~--------------~~~~dlvi~D~~l~~~~g~~~~~~l 68 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN--------------EPWPDLILLAWMLPGGSGIQFIKHL 68 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS--------------SSCCSEEEEESEETTEEHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh--------------ccCCCEEEEecCCCCCCHHHHHHHH
Confidence 58999999999999999999989999999999999988772 4569999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++....+.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 119 (127)
T 2jba_A 69 RRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAV 119 (127)
T ss_dssp HTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHH
T ss_pred HhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 975434678999999988888888899999999999999999999887764
No 47
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.87 E-value=4.5e-21 Score=128.81 Aligned_cols=119 Identities=24% Similarity=0.384 Sum_probs=101.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~dlvi~D~~l~~~~g~~~~~~ 68 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN--------------ATPPDLVLLDIMMEPMDGWETLER 68 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEEESCCSSSCHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh--------------ccCCCEEEEeCCCCCCCHHHHHHH
Confidence 368999999999999999999999999999999999998873 246899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
|++....+.+|+|++|+.........++..|+++|+.||++.+++...+.+++
T Consensus 69 l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~ 121 (138)
T 3c3m_A 69 IKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVL 121 (138)
T ss_dssp HHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHH
T ss_pred HHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHH
Confidence 99754345789999998765554445556668999999999999998887653
No 48
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.87 E-value=1.5e-20 Score=125.65 Aligned_cols=120 Identities=24% Similarity=0.453 Sum_probs=102.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ... |++++|+.||+++|++++
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--------------~~~-dlvllD~~lp~~~g~~~~ 69 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--------------HEH-KVVFMDVCMPGVENYQIA 69 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC--------------TTC-SEEEEECCSSTTTTTHHH
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--------------ccC-CEEEEeCCCCCCcHHHHH
Confidence 34678999999999999999999999999999999999998773 233 999999999999999999
Q ss_pred HHHHhccCC--CCC-cEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVM--KEV-PVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~--~~~-pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.+++.... ... ++|++|+..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 70 ~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 127 (136)
T 1dcf_A 70 LRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLL 127 (136)
T ss_dssp HHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHh
Confidence 999843211 123 5778898888888889999999999999999999998887753
No 49
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.87 E-value=8.6e-21 Score=127.41 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=106.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN-SACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~-~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+|+++..+..+...|+. .|+. +..+.++.+++..+. ...||+||+|+.+|+.+|+++
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--------------~~~~dlii~d~~l~~~~g~~~ 72 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH--------------TVKPDVVMLDLMMVGMDGFSI 72 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH--------------HTCCSEEEEETTCTTSCHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH--------------hcCCCEEEEecccCCCcHHHH
Confidence 457899999999999999999998 8999 999999999998873 346999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++.+++....+.+|+|++++..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 73 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 128 (143)
T 3cnb_A 73 CHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLV 128 (143)
T ss_dssp HHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 99999843446899999999988888899999999999999999999998887753
No 50
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.87 E-value=2.6e-21 Score=142.79 Aligned_cols=118 Identities=16% Similarity=0.350 Sum_probs=106.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
++..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|++++
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~DlvllD~~lp~~~G~~l~ 100 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR--------------EDHPDLILLDLGLPDFDGGDVV 100 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--------------HSCCSEEEEECCSCHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------cCCCCEEEEcCCCCCCCHHHHH
Confidence 34578999999999999999999999999999999999998873 3469999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++|++ . +.+|||++|+..+.....++++.|+++||.||+++++|...+..++
T Consensus 101 ~~lr~-~--~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l 152 (249)
T 3q9s_A 101 QRLRK-N--SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQL 152 (249)
T ss_dssp HHHHT-T--CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHc-C--CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 99997 3 5789999999999999999999999999999999999998887653
No 51
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.87 E-value=5.3e-21 Score=136.71 Aligned_cols=117 Identities=25% Similarity=0.380 Sum_probs=106.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvl~D~~lp~~~g~~~~~ 68 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR--------------PEQHGCLVLDMRMPGMSGIELQE 68 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC--------------TTSCEEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh--------------ccCCCEEEEeCCCCCCCHHHHHH
Confidence 3568999999999999999999999999999999999998873 45799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~l~~~~--~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (208)
T 1yio_A 69 QLTAIS--DGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQG 119 (208)
T ss_dssp HHHHTT--CCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhcC--CCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 999854 689999999988888889999999999999999999998877664
No 52
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.87 E-value=7.3e-21 Score=128.44 Aligned_cols=124 Identities=26% Similarity=0.469 Sum_probs=107.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccC---C--CcccEEEEeCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSN---G--TKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~---~--~~~dlii~D~~~~~~ 91 (153)
+..+|||+||++..+..++..|+..|+ .+..+.++.+++..+.... .. . ..||+||+|+.+|++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~---------~~~~~~~~~~~dlvi~D~~l~~~ 75 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTG---------SYCNPDIAPRPAVILLDLNLPGT 75 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCC---------SSSCGGGCCCCSEEEECSCCSSS
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcc---------cccCcccCCCCcEEEEECCCCCC
Confidence 457899999999999999999999888 8999999999999883100 00 0 579999999999999
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+|+++++.+++....+.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 76 ~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 135 (149)
T 1k66_A 76 DGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTF 135 (149)
T ss_dssp CHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 999999999975433578999999998888899999999999999999999999888775
No 53
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.87 E-value=5.1e-21 Score=130.41 Aligned_cols=122 Identities=26% Similarity=0.391 Sum_probs=105.3
Q ss_pred CCCCCCCCeEEEEeCCHHHHHHHHHHHHhcCcE--EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 14 SSSNPKPPHVLAVDDSIVDRKIVENLLKNSACK--VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 14 ~~~~~~~~~iLiidd~~~~~~~l~~~l~~~~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
.....+..+|||+||++..+..+..+|+..|+. +..+.++.+++..+. ...||+||+|+.+|++
T Consensus 9 ~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~--------------~~~~dlii~d~~l~~~ 74 (152)
T 3eul_A 9 SNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK--------------AHLPDVALLDYRMPGM 74 (152)
T ss_dssp -----CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH--------------HHCCSEEEEETTCSSS
T ss_pred CCCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCC
Confidence 333456689999999999999999999988843 568999999999874 2469999999999999
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+|+++++.+++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 75 ~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 132 (152)
T 3eul_A 75 DGAQVAAAVRSYE--LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDC 132 (152)
T ss_dssp CHHHHHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC--CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 9999999999864 688999999999999999999999999999999999999888765
No 54
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.87 E-value=1.5e-21 Score=130.14 Aligned_cols=116 Identities=20% Similarity=0.296 Sum_probs=102.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
.+|||+||++..+..++.+|++.|+.+. .+.++.+++..+. ...||+||+|+.+|+++|+++++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~--------------~~~~dlii~d~~l~~~~g~~~~~~ 67 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE--------------TLKPDIVIIDVDIPGVNGIQVLET 67 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH--------------HHCCSEEEEETTCSSSCHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH--------------hcCCCEEEEecCCCCCChHHHHHH
Confidence 5799999999999999999999999887 8999999998873 246999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+|+.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 68 l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 118 (134)
T 3f6c_A 68 LRKRQ--YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 118 (134)
T ss_dssp HHHTT--CCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHH
T ss_pred HHhcC--CCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHH
Confidence 99864 6899999999988888899999999999999999999999888754
No 55
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.87 E-value=9e-21 Score=123.74 Aligned_cols=114 Identities=26% Similarity=0.406 Sum_probs=103.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--------------~~~~dlvl~D~~l~~~~g~~~~~~l 67 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE--------------AEQPDIIILDLMLPEIDGLEVAKTI 67 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH--------------hCCCCEEEEeccCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999998773 2358999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 68 ~~~---~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 115 (120)
T 2a9o_A 68 RKT---SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKAL 115 (120)
T ss_dssp HHH---CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhC---CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHH
Confidence 973 478999999988888888999999999999999999999888764
No 56
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.87 E-value=5.4e-21 Score=128.34 Aligned_cols=115 Identities=19% Similarity=0.303 Sum_probs=104.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvllD~~l~~~~g~~l~~~ 69 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF--------------SNKYDLIFLEIILSDGDGWTLCKK 69 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--------------HCCCSEEEEESEETTEEHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHHH
Confidence 468999999999999999999988999999999999998873 246899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
|++.. .+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 70 l~~~~---~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~ 118 (136)
T 2qzj_A 70 IRNVT---TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAI 118 (136)
T ss_dssp HHTTC---CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HccCC---CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 99742 68999999988888889999999999999999999999877764
No 57
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.86 E-value=6.8e-21 Score=127.15 Aligned_cols=116 Identities=25% Similarity=0.386 Sum_probs=104.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--------------~~~~dlvl~D~~l~~~~g~~~~~~ 68 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE--------------TEKPDLIVLDVMLPKLDGIEVCKQ 68 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HHCCSEEEEESSCSSSCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh--------------hcCCCEEEEecCCCCCCHHHHHHH
Confidence 468999999999999999999999999999999999998773 235899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++++..+......+++.|+++|+.||++.+++...+.++
T Consensus 69 l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (136)
T 1mvo_A 69 LRQQK--LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAI 118 (136)
T ss_dssp HHHTT--CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHcCC--CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHH
Confidence 99854 578999999988888888999999999999999999999887764
No 58
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.86 E-value=4.9e-21 Score=129.59 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=106.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+|+++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|+.+|+++|+++++
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlii~d~~l~~~~g~~~~~ 72 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV--------------KTHPHLIITEANMPKISGMDLFN 72 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH--------------HHCCSEEEEESCCSSSCHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH--------------cCCCCEEEEcCCCCCCCHHHHHH
Confidence 4578999999999999999999999999999999999998873 23699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.|++....+.+|+|++++..+.....++++.|+++|+.||++.++|...+.++
T Consensus 73 ~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~ 125 (147)
T 2zay_A 73 SLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp HHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 99974334689999999998888889999999999999999999999888765
No 59
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.86 E-value=7e-21 Score=140.92 Aligned_cols=117 Identities=26% Similarity=0.511 Sum_probs=107.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
...+|||+||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--------------~~~~dlvl~D~~mp~~~G~~l~~ 193 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--------------KNHIDIVLSDVNMPNMDGYRLTQ 193 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH--------------HSCCSEEEEEESSCSSCCHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--------------hCCCCEEEEcCCCCCCCHHHHHH
Confidence 4578999999999999999999999999999999999999883 24699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+||+.. +.+|||++|+........++++.|+++|+.||++.++|...+.++
T Consensus 194 ~ir~~~--~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 244 (254)
T 2ayx_A 194 RIRQLG--LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLY 244 (254)
T ss_dssp HHHHHH--CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhcC--CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHH
Confidence 999865 579999999998888889999999999999999999999888764
No 60
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.86 E-value=2.4e-20 Score=127.31 Aligned_cols=118 Identities=31% Similarity=0.411 Sum_probs=106.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+..+|||+|+++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|+.+|+.+|++++
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvi~d~~l~~~~g~~~~ 70 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK--------------GTSVQLVISDMRMPEMGGEVFL 70 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT--------------TSCCSEEEEESSCSSSCHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh--------------cCCCCEEEEecCCCCCCHHHHH
Confidence 45688999999999999999999999999999999999999883 4569999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-CcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.+++.. +.+|+|++++..+.....++++.| +++|+.||++.+++...+.++
T Consensus 71 ~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~ 123 (154)
T 2rjn_A 71 EQVAKSY--PDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKG 123 (154)
T ss_dssp HHHHHHC--TTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHhC--CCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHH
Confidence 9999854 589999999988888888999998 999999999999999887764
No 61
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.86 E-value=1.8e-20 Score=126.10 Aligned_cols=116 Identities=27% Similarity=0.387 Sum_probs=106.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+ +|+.+|+++++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvi~d~-~~~~~g~~~~~ 67 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR--------------REKIDLVFVDV-FEGEESLNLIR 67 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT--------------TSCCSEEEEEC-TTTHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--------------ccCCCEEEEeC-CCCCcHHHHHH
Confidence 3568999999999999999999999999999999999999883 45799999999 99999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 68 ~l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 118 (142)
T 2qxy_A 68 RIREEF--PDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKI 118 (142)
T ss_dssp HHHHHC--TTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHH
T ss_pred HHHHHC--CCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHH
Confidence 999764 579999999998888899999999999999999999999888775
No 62
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.86 E-value=5.2e-22 Score=149.68 Aligned_cols=114 Identities=25% Similarity=0.379 Sum_probs=102.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~~g~~~~ 97 (153)
..+||++||++..+..+..+|+..||.+. .+.++.+|++.+. ...||+||+|+.|| +++|++++
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~--------------~~~~dlvl~D~~MPd~mdG~e~~ 225 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT--------------RRTPGLVLADIQLADGSSGIDAV 225 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------------HCCCSEEEEESCCTTSCCTTTTT
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH--------------hCCCCEEEEcCCCCCCCCHHHHH
Confidence 46899999999999999999999999999 9999999999884 35699999999999 79999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.||+.. .+|||++|+.. +...++++.|+++||.||+++++|...+.+++
T Consensus 226 ~~ir~~~---~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l 275 (286)
T 3n0r_A 226 KDILGRM---DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQAL 275 (286)
T ss_dssp HHHHHHT---TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHH
T ss_pred HHHHhcC---CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 9999864 89999999974 34667899999999999999999999888754
No 63
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.86 E-value=3.1e-21 Score=129.92 Aligned_cols=118 Identities=22% Similarity=0.312 Sum_probs=104.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~g~~~~ 97 (153)
+..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ....||+||+|+.||+ ++|++++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------~~~~~dlvi~D~~l~~~~~g~~~~ 70 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVS-------------GGWYPDLILMDIELGEGMDGVQTA 70 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------TTCCCSEEEEESSCSSSCCHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHh-------------cCCCCCEEEEeccCCCCCCHHHHH
Confidence 4578999999999999999999999999999999999999873 2257999999999995 9999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.+++. +.+|+|++++..+.....++++.|+++|+.||++.++|...+.+++
T Consensus 71 ~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 71 LAIQQI---SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp HHHHHH---CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHhC---CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 999974 5789999999888877888999999999999999999998887753
No 64
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.86 E-value=1.1e-20 Score=126.59 Aligned_cols=118 Identities=24% Similarity=0.261 Sum_probs=106.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-----CCCH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-----GMTG 93 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-----~~~g 93 (153)
+..+|||+|+++..+..+...|+..|+.+..+.+..+++..+. ...||+||+|+.++ +.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlvi~d~~~~~~~~~~~~g 67 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR--------------EENPEVVLLDMNFTSGINNGNEG 67 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH--------------HSCEEEEEEETTTTC-----CCH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH--------------cCCCCEEEEeCCcCCCCCCCccH
Confidence 4578999999999999999999999999999999999998873 34699999999999 9999
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++++.+++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 68 ~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 68 LFWLHEIKRQY--RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp HHHHHHHHHHC--TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 99999999864 6899999999888888899999999999999999999999888754
No 65
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.86 E-value=8.3e-21 Score=126.07 Aligned_cols=116 Identities=21% Similarity=0.363 Sum_probs=102.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS-ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~-~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+|||+||++..+..++.+|+.. |+.+. .+.++.+++..+. ...||++|+|+.||+++|+++++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~--------------~~~~dlvllD~~l~~~~g~~~~~ 68 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE--------------EKRPDILLLDIIMPHLDGLAVLE 68 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH--------------HHCCSEEEEESCCSSSCHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--------------cCCCCEEEEecCCCCCCHHHHHH
Confidence 57999999999999999999976 78765 7899999998873 23589999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++++.. .+.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~l~~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~ 120 (130)
T 1dz3_A 69 RIRAGF-EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120 (130)
T ss_dssp HHHHHC-SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHH
T ss_pred HHHhcC-CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999742 2567899999988888889999999999999999999999888764
No 66
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.86 E-value=5.1e-21 Score=128.67 Aligned_cols=120 Identities=23% Similarity=0.428 Sum_probs=107.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+|+++..+..+...|+..|+.+..+.+..+++..+. ...||+||+|+.+|+++|+++++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dlii~d~~l~~~~g~~~~~ 71 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK--------------KGFSGVVLLDIMMPGMDGWDTIR 71 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------TCCCEEEEEESCCSSSCHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 5678999999999999999999999999999999999999883 35699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+++....+.+|+|++++..+.....++++.|+++|+.||++.++|...+.+++
T Consensus 72 ~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 72 AILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp HHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 999843346899999999887777788999999999999999999998887753
No 67
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.85 E-value=8.6e-21 Score=123.40 Aligned_cols=114 Identities=25% Similarity=0.405 Sum_probs=101.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.||+++|+++++.+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~--------------~~~~dlvl~D~~l~~~~g~~~~~~l 67 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF--------------SGNYDLVILDIEMPGISGLEVAGEI 67 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh--------------cCCCCEEEEECCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999998873 2469999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++.. +.+|+|++++..+.. .++++.|+++|+.||++.+++...+.+++
T Consensus 68 ~~~~--~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 68 RKKK--KDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp HHHC--TTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HccC--CCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9764 578999999875544 67889999999999999999999888764
No 68
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.85 E-value=2.7e-21 Score=150.40 Aligned_cols=115 Identities=22% Similarity=0.265 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+||||||++..+..+..+|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--------------~~~~DlvllDi~mP~~dG~ell~~l 66 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK--------------ELFFPVIVLDVWMPDGDGVNFIDFI 66 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HBCCSEEEEESEETTEETTTHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 37999999999999999999999999999999999999883 3469999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|||++|+..+.+...++++.|+++|+.||++.+++...+.++
T Consensus 67 r~~~--~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 115 (368)
T 3dzd_A 67 KENS--PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHA 115 (368)
T ss_dssp HHHC--TTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHH
T ss_pred HhhC--CCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 9865 688999999998888999999999999999999999999888764
No 69
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.85 E-value=2.6e-20 Score=126.85 Aligned_cols=117 Identities=26% Similarity=0.332 Sum_probs=104.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+. ++.+..+.++.+++..+.. ..+||+||+|+.+|+++|+++++
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~-------------~~~~dlvi~D~~l~~~~g~~~~~ 68 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK-------------SDPFSVIMVDMRMPGMEGTEVIQ 68 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH-------------SCCCSEEEEESCCSSSCHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc-------------CCCCCEEEEeCCCCCCcHHHHHH
Confidence 457899999999999999999976 8999999999999998841 23479999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-CcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|++++..+.....+++..| +++|+.||++.+++...+.++
T Consensus 69 ~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~ 120 (151)
T 3kcn_A 69 KARLIS--PNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAG 120 (151)
T ss_dssp HHHHHC--SSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhcC--CCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHH
Confidence 999765 688999999988888889999999 999999999999999888765
No 70
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.85 E-value=2e-21 Score=130.67 Aligned_cols=119 Identities=25% Similarity=0.329 Sum_probs=96.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+..+|+.. +.+..+.++.+++..+. ...||+||+|+.+|+++|+++++
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~--------------~~~~dlvi~D~~l~~~~g~~~~~ 66 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID--------------HHHPDLVILDMDIIGENSPNLCL 66 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH--------------HHCCSEEEEETTC------CHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCcHHHHHH
Confidence 3578999999999999999999987 99999999999999883 24689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+++....+.+|+|++++..+.+...++++.|+++|+.||++.+++...+.+++
T Consensus 67 ~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 67 KLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp HHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 999865446899999999888888888999999999999999999998887753
No 71
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.85 E-value=3.7e-20 Score=126.49 Aligned_cols=116 Identities=25% Similarity=0.400 Sum_probs=105.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
.++|||+|+++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.+|+.+|+++++.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~dliild~~l~~~~g~~~~~~ 68 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS--------------ADFAGIVISDIRMPGMDGLALFRK 68 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC--------------TTCCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHHH
Confidence 468999999999999999999999999999999999998873 457999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 118 (155)
T 1qkk_A 69 ILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRA 118 (155)
T ss_dssp HHHHC--TTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHhhC--CCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 99764 689999999988888889999999999999999999999888764
No 72
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.85 E-value=9.3e-21 Score=126.08 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=103.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..++.+|+..++.+..+.+..+++..+ ... ||+||+|+.+|+.+|+++++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~--------------~~~-~dlvi~D~~l~~~~g~~~~~ 66 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLS--------------LNK-QDIIILDLMMPDMDGIEVIR 66 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSC--------------CCT-TEEEEEECCTTTTHHHHHHH
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhh--------------ccC-CCEEEEeCCCCCCCHHHHHH
Confidence 457899999999999999999998888999999999988766 234 99999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCCh-----hhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 99 KIKESSVMKEVPVVVVSSENIP-----TRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~-----~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+++.. +.+|+|++++..+. ....+++..|+++|+.||++.+++...+.++.
T Consensus 67 ~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~ 123 (135)
T 3eqz_A 67 HLAEHK--SPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLS 123 (135)
T ss_dssp HHHHTT--CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHS
T ss_pred HHHhCC--CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHH
Confidence 999855 67899999987764 56667889999999999999999999998864
No 73
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.85 E-value=1.8e-20 Score=134.67 Aligned_cols=117 Identities=31% Similarity=0.473 Sum_probs=104.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-ACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..+..+|+.. ++.+ ..+.++.+++..+. ...||+||+|+.||+++|+++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~--------------~~~~dlvllD~~lp~~~g~~~ 69 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE--------------SLDPDLILLDLNMPGMNGLET 69 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH--------------HHCCSEEEEETTSTTSCHHHH
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCcHHHH
Confidence 3468999999999999999999876 4777 78999999998873 245899999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.+++.. +.+|+|++|...+.+...++++.|+++|+.||++++++...+.++
T Consensus 70 ~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 122 (215)
T 1a04_A 70 LDKLREKS--LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQA 122 (215)
T ss_dssp HHHHHHSC--CCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Confidence 99999854 578999999998999999999999999999999999999888764
No 74
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.85 E-value=1.9e-20 Score=125.36 Aligned_cols=118 Identities=15% Similarity=0.259 Sum_probs=105.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CCCHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GMTGYE 95 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~~g~~ 95 (153)
.+..+|||+|+++..+..+...|+..|+.+. .+.++.+++..+. ...||+||+|+.+| +.+|++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~--------------~~~~dlii~d~~~~~~~~g~~ 72 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP--------------DLRPDIALVDIMLCGALDGVE 72 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH--------------HHCCSEEEEESSCCSSSCHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH--------------hCCCCEEEEecCCCCCCCHHH
Confidence 3467899999999999999999999999998 5999999998873 23599999999998 799999
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++.+++. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 73 ~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 73 TAARLAAG---CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp HHHHHHHH---SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 99999985 5789999999988888899999999999999999999998887753
No 75
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.85 E-value=4.4e-20 Score=125.84 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=106.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN-SACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~-~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..+...|+. .|+.+. .+.++.+++..+. ...||+||+|+.+++.+|+++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~--------------~~~~dlii~D~~l~~~~g~~~ 69 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR--------------ETTPDIVVMDLTLPGPGGIEA 69 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH--------------TTCCSEEEECSCCSSSCHHHH
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh--------------cCCCCEEEEecCCCCCCHHHH
Confidence 346899999999999999999998 789887 8999999998873 356999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++++++.. +.+|+|++++..+.....++++.|+++|+.||++.++|...+.+++
T Consensus 70 ~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 70 TRHIRQWD--GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHHHHHC--TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred HHHHHHhC--CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 99999864 5789999999988888999999999999999999999999888754
No 76
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.85 E-value=6.5e-21 Score=136.18 Aligned_cols=117 Identities=24% Similarity=0.364 Sum_probs=104.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
.+..+|||+||++..+..+...|...||.+. .+.++.+++..+. ...||+||+|+.||+++|+++
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~--------------~~~~dlvi~D~~~p~~~g~~~ 76 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE--------------LHKPDLVIMDVKMPRRDGIDA 76 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------------HHCCSEEEEESSCSSSCHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------------hcCCCEEEEeCCCCCCChHHH
Confidence 3457899999999999999999999999987 8999999998873 245999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.+++.. ..|+|++|+..+.....++++.|+++|+.||++.++|...+.++
T Consensus 77 ~~~l~~~~---~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 128 (205)
T 1s8n_A 77 ASEIASKR---IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELA 128 (205)
T ss_dssp HHHHHHTT---CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHhcC---CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Confidence 99999754 35999999988888888999999999999999999998877664
No 77
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.85 E-value=1.1e-20 Score=124.15 Aligned_cols=119 Identities=20% Similarity=0.350 Sum_probs=104.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~~g~~~~ 97 (153)
+..+|||+|+++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.+| +.+|++++
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--------------~~~~dlvi~d~~~~~~~~g~~~~ 69 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR--------------RDRPDLVVLAVDLSAGQNGYLIC 69 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH--------------HHCCSEEEEESBCGGGCBHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCCHHHHH
Confidence 3468999999999999999999999999999999999998873 24589999999999 99999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+.+++....+.+|+|++ +..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 70 ~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 70 GKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp HHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 99998643468899999 7777778888999999999999999999999888754
No 78
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.85 E-value=2.2e-20 Score=122.08 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=102.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvi~D~~l~~~~g~~~~~~l 67 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA--------------TRKPDLIILDLGLPDGDGIEFIRDL 67 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--------------HHCCSEEEEESEETTEEHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 47999999999999999999988999999999999988763 2358999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++ . +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 68 ~~-~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 115 (121)
T 1zh2_A 68 RQ-W--SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 (121)
T ss_dssp HT-T--CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred Hh-C--CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHH
Confidence 94 2 578999999998888889999999999999999999999887764
No 79
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.85 E-value=1.8e-20 Score=126.47 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=95.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh--cCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKN--SACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~--~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.+|||+||++..+..+...|.. .++.+. .+.++.+++..+. ...||++|+|+.||+++|++++
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~--------------~~~~dlvllD~~lp~~~g~~l~ 68 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL--------------KHPPNVLLTDVRMPRMDGIELV 68 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT--------------TSCCSEEEEESCCSSSCHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHH
Confidence 5799999999999999999973 577766 8999999998873 4569999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++|++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 ~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 120 (141)
T 3cu5_A 69 DNILKLY--PDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQS 120 (141)
T ss_dssp HHHHHHC--TTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHH
T ss_pred HHHHhhC--CCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHH
Confidence 9999754 578999999988877888999999999999999999999887764
No 80
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.8e-20 Score=123.98 Aligned_cols=124 Identities=23% Similarity=0.345 Sum_probs=105.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..+...|+..|+ .+..+.++.+++..+.... ......||+||+|+.+|+.+|+++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~--------~~~~~~~dlii~D~~l~~~~g~~~ 77 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN--------KENKIHPKLILLDINIPKMNGIEF 77 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT--------TCCCCCCSEEEEETTCTTSCHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc--------cccCCCCCEEEEecCCCCCCHHHH
Confidence 356899999999999999999998887 8999999999998873100 000257999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
++.+++....+.+|+|+++...+.....++++.|+++|+.||++.+++.+.+.+
T Consensus 78 ~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 78 LKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp HHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 999997543357899999999888888999999999999999999999887654
No 81
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.84 E-value=2.7e-20 Score=134.41 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=105.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
.++|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--------------~~~~dlvllD~~l~~~~g~~~~~~ 67 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL--------------NEPFDVVILDIMLPVHDGWEILKS 67 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEEESCCSSSCHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCCHHHHHHH
Confidence 368999999999999999999999999999999999998773 346999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++|+..+.....++++.|+++|+.||++++++...+.++
T Consensus 68 lr~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 117 (225)
T 1kgs_A 68 MRESG--VNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL 117 (225)
T ss_dssp HHHTT--CCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHH
T ss_pred HHhcC--CCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHH
Confidence 99854 689999999988888889999999999999999999999887764
No 82
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.84 E-value=1.6e-20 Score=146.72 Aligned_cols=116 Identities=29% Similarity=0.514 Sum_probs=101.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+||||||++..+..++.+|+..||.+..+.++.++++.+. ...||+||+|+.||+++|++++++
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~--------------~~~~dlvllD~~mp~~~G~~~~~~ 70 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE--------------SEQPDLVICDLRMPQIDGLELIRR 70 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH--------------HSCCSEEEECCCSSSSCTHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh--------------hCCCCEEEEcCCCCCCCHHHHHHH
Confidence 468999999999999999999999999999999999999873 356999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCC-ChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPL-KPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~-~~~~l~~~~~~~ 151 (153)
||+.. +.+|+|++|+..+.+...++++.|+++||.||+ +.+++...+.++
T Consensus 71 lr~~~--~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~ 121 (394)
T 3eq2_A 71 IRQTA--SETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRA 121 (394)
T ss_dssp HHHTT--CCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHH
T ss_pred HHhhC--CCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHH
Confidence 99864 689999999998889999999999999999999 578777766553
No 83
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.84 E-value=7.8e-20 Score=122.75 Aligned_cols=114 Identities=24% Similarity=0.393 Sum_probs=99.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..+...|+.. +.+..+.++.+++..+. ...||++|+|+.||+++|+++++.|
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~--------------~~~~dlvl~D~~lp~~~g~~~~~~l 66 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE--------------EEWVQVIICDQRMPGRTGVDFLTEV 66 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH--------------HSCEEEEEEESCCSSSCHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh--------------cCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 47999999999999999999875 88999999999998873 2469999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHh-cCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEE-GAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~-ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|++++..+.....+++.. |+++|+.||++.+++...+.++
T Consensus 67 ~~~~--~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 116 (139)
T 2jk1_A 67 RERW--PETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNA 116 (139)
T ss_dssp HHHC--TTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHhC--CCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHH
Confidence 9754 57899999998777777788876 5999999999999999877664
No 84
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.84 E-value=4.4e-20 Score=125.87 Aligned_cols=118 Identities=28% Similarity=0.355 Sum_probs=95.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-Cc-EEEEecCHHHHHHHhchhhhHHhhhhcccCC-CcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-AC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNG-TKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~dlii~D~~~~~~~g~~ 95 (153)
+.++|||+|+++..+..+...|+.. |+ .+..+.+..+++..+. . ..||+||+|+.+|+.+|++
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~--------------~~~~~dlvi~d~~l~~~~g~~ 67 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLE--------------ADNTVDLILLDVNLPDAEAID 67 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH--------------TTCCCSEEEECC------CHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHh--------------ccCCCCEEEEeCCCCCCchHH
Confidence 3468999999999999999999987 77 6889999999999883 3 5799999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++.+++.. +.+|+|++++..+.....++++.|+++|+.||++.++|...+.+++
T Consensus 68 ~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~ 122 (154)
T 2qsj_A 68 GLVRLKRFD--PSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLIL 122 (154)
T ss_dssp HHHHHHHHC--TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHH
Confidence 999999864 5789999999888888899999999999999999999999888753
No 85
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.84 E-value=4.7e-20 Score=146.35 Aligned_cols=117 Identities=26% Similarity=0.434 Sum_probs=105.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+||||||++..+..+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.|
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~--------------~~~~dlvllD~~mp~~~G~~~~~~l 67 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA--------------RDLPDIILLDVMMPGMDGFTVCRKL 67 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HHCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh--------------cCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 47999999999999999999999999999999999999873 2468999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++....+.+|||++|+..+.....++++.|+++||.||++.++|...+.++
T Consensus 68 ~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~ 118 (459)
T 1w25_A 68 KDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 118 (459)
T ss_dssp HHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHH
T ss_pred hcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 975444679999999999999999999999999999999999998877654
No 86
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.83 E-value=1.1e-19 Score=117.57 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=102.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++||++|+++..+..+...|+..|+.+..+.+..+++..+. ...||++|+|+.+++.+|+++++.+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~--------------~~~~dlii~d~~~~~~~~~~~~~~l 67 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD--------------LLQPIVILMAWPPPDQSCLLLLQHL 67 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH--------------HHCCSEEEEECSTTCCTHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH--------------hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 57999999999999999999999999999999999998873 2368999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++....+.+|+|++++..+.. .+++.|+++|+.||++.+++...+.+++
T Consensus 68 ~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 68 REHQADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HHTCCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred HhccccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 986434678999999876655 8899999999999999999999888754
No 87
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.83 E-value=4.8e-20 Score=124.61 Aligned_cols=110 Identities=29% Similarity=0.392 Sum_probs=92.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhc-CcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCC-cccEEEEeCCCCCCCHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNS-ACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGT-KVNLVITDYCMPGMTGY 94 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~-~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-~~dlii~D~~~~~~~g~ 94 (153)
.+..+|||+||++..+..++.+|++. |+.+ ..+.++.+++..+. .. .||+||+|+.||+++|+
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--------------~~~~~dlvilD~~l~~~~g~ 76 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA--------------AQPNVDLILLDIEMPVMDGM 76 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH--------------HCTTCCEEEECTTSCCCTTC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh--------------cCCCCCEEEEeCCCCCCCHH
Confidence 45688999999999999999999987 8875 48999999998873 23 69999999999999999
Q ss_pred HHHHHHHhccCCCCCcEEEEeC--CCChhhHHHHHHhcCcccccCCCChhHH
Q 042079 95 ELLKKIKESSVMKEVPVVVVSS--ENIPTRINECLEEGAQMFMLKPLKPSDV 144 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~--~~~~~~~~~a~~~ga~~~l~KP~~~~~l 144 (153)
++++++|+.. ..|+++++. ..+.....++++.|+++|+.||+++.++
T Consensus 77 ~~~~~lr~~~---~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 77 EFLRHAKLKT---RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp HHHHHHHHHC---CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred HHHHHHHhcC---CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 9999999754 378888887 4556667889999999999999995543
No 88
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.83 E-value=3.8e-20 Score=134.26 Aligned_cols=117 Identities=26% Similarity=0.372 Sum_probs=105.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..++|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--------------~~~~dlvllD~~l~~~~g~~~~~ 71 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT--------------ENRPDAIVLDINMPVLDGVSVVT 71 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------HSCCSEEEEESSCSSSCHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHH
Confidence 3478999999999999999999999999999999999998773 34699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 72 ~l~~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 122 (233)
T 1ys7_A 72 ALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKAL 122 (233)
T ss_dssp HHHHTT--CCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999754 689999999988888888899999999999999999999887765
No 89
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.83 E-value=3.1e-19 Score=119.44 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=103.7
Q ss_pred CCCCCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 15 SSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 15 ~~~~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
....+..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||+|| +|+++|+
T Consensus 13 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~dlvi----~~~~~g~ 74 (137)
T 2pln_A 13 LVPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD--------------IRNYDLVM----VSDKNAL 74 (137)
T ss_dssp --CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH--------------HSCCSEEE----ECSTTHH
T ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH--------------cCCCCEEE----EcCccHH
Confidence 33346689999999999999999999999999999999999998873 34689999 8999999
Q ss_pred HHHHHHHhccCCC-CCcEEEEeCCCChhhHHHHHHhcCcccccCCC-ChhHHHHHHhhhc
Q 042079 95 ELLKKIKESSVMK-EVPVVVVSSENIPTRINECLEEGAQMFMLKPL-KPSDVKKLTGHLI 152 (153)
Q Consensus 95 ~~~~~lr~~~~~~-~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~-~~~~l~~~~~~~~ 152 (153)
++++.|++. + .+|+|++++..+.....++++.|+++|+.||+ +.+++...+.+++
T Consensus 75 ~~~~~l~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 75 SFVSRIKEK---HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HHHHHHHHH---STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred HHHHHHHhc---CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 999999985 5 78999999998888899999999999999999 9999999888754
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.83 E-value=6.5e-20 Score=143.48 Aligned_cols=115 Identities=30% Similarity=0.445 Sum_probs=105.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.||+++|+++++++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~--------------~~~~DlvllD~~mp~~dG~ell~~l 66 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS--------------EKHFNVVLLDLLLPDVNGLEILKWI 66 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH--------------HSCCSEEEEESBCSSSBHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999988999999999999999873 3469999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|++|+..+.+...++++.|+++|+.||++.+++...+.++
T Consensus 67 r~~~--~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 115 (387)
T 1ny5_A 67 KERS--PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKA 115 (387)
T ss_dssp HHHC--TTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHH
T ss_pred HhhC--CCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHH
Confidence 9754 689999999999999999999999999999999999999887764
No 91
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.83 E-value=6e-20 Score=123.06 Aligned_cols=123 Identities=15% Similarity=0.229 Sum_probs=99.1
Q ss_pred CCCCCCCCCCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCC-CcccEEEEeCCC
Q 042079 10 SSSSSSSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNG-TKVNLVITDYCM 88 (153)
Q Consensus 10 ~~~~~~~~~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~dlii~D~~~ 88 (153)
+........+..+|||+||++..+..+...|+..|+.+..+.++.+++..+. . ..||++|+|+.|
T Consensus 5 ~~~~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~~dlvilD~~l 70 (138)
T 2b4a_A 5 KIHHHHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS--------------QLSTCDLLIVSDQL 70 (138)
T ss_dssp ---------CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG--------------GGGSCSEEEEETTC
T ss_pred hhhhccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH--------------hCCCCCEEEEeCCC
Confidence 3344444556789999999999999999999999999999999999998873 3 469999999999
Q ss_pred CCCCHHHHHHHHHhccCCCCCcEEEEe-CCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 89 PGMTGYELLKKIKESSVMKEVPVVVVS-SENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 89 ~~~~g~~~~~~lr~~~~~~~~pii~~t-~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
|+++|+++++.+++.. +.+|+|+++ +..+... .+++ +++|+.||++.+++...+.+++
T Consensus 71 ~~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~ 129 (138)
T 2b4a_A 71 VDLSIFSLLDIVKEQT--KQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHK 129 (138)
T ss_dssp TTSCHHHHHHHHTTSS--SCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhhC--CCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHH
Confidence 9999999999999743 689999999 7766555 5555 9999999999999999888754
No 92
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.82 E-value=1.5e-19 Score=130.98 Aligned_cols=116 Identities=23% Similarity=0.378 Sum_probs=104.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~--------------~~~~dlvllD~~l~~~~g~~~~~~ 69 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD--------------RAGADIVLLDLMLPGMSGTDVCKQ 69 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH--------------HHCCSEEEEESSCSSSCHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh--------------ccCCCEEEEECCCCCCCHHHHHHH
Confidence 368999999999999999999999999999999999998773 235899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.+++
T Consensus 70 l~~~---~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (230)
T 2oqr_A 70 LRAR---SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119 (230)
T ss_dssp HHHH---CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHH
T ss_pred HHcC---CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 9974 4789999999888888889999999999999999999998887753
No 93
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.82 E-value=1.5e-19 Score=131.99 Aligned_cols=116 Identities=22% Similarity=0.446 Sum_probs=105.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~dlvilD~~l~~~~g~~~~~~ 70 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR--------------ELRPDLVLLDLMLPGMNGIDVCRV 70 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH--------------HHCCSEEEEESSCSSSCHHHHHHH
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHHH
Confidence 368999999999999999999999999999999999998773 235899999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++. +.+|+|++|+..+.....++++.|+++|+.||+++++|...+.+++
T Consensus 71 lr~~---~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 120 (238)
T 2gwr_A 71 LRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARL 120 (238)
T ss_dssp HHTT---CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHC
T ss_pred HHhC---CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 9974 3789999999888888899999999999999999999998887754
No 94
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.82 E-value=4.9e-19 Score=117.37 Aligned_cols=116 Identities=19% Similarity=0.309 Sum_probs=101.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCC-cccEEEEeCCCCC-CCHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGT-KVNLVITDYCMPG-MTGYE 95 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-~~dlii~D~~~~~-~~g~~ 95 (153)
++..+|||+|+++..+..+...|+..|+.+..+.++.+++..+. .. .||++|+|+.+|+ .+|++
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------~~~~~dlvi~d~~l~~~~~g~~ 68 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLK--------------SGAAIDGVVTDIRFCQPPDGWQ 68 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------TTCCCCEEEEESCCSSSSCHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH--------------cCCCCCEEEEeeeCCCCCCHHH
Confidence 34578999999999999999999999999999999999998873 33 6999999999997 99999
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.+++.. +.+|+|++++..+.....+++..| +|+.||++.+++...+.++
T Consensus 69 ~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~ 120 (132)
T 2rdm_A 69 VARVAREID--PNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQL 120 (132)
T ss_dssp HHHHHHHHC--TTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHH
Confidence 999999864 589999999988777766666654 7999999999999888775
No 95
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.81 E-value=5.5e-19 Score=118.89 Aligned_cols=116 Identities=22% Similarity=0.372 Sum_probs=98.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-CcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-ACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|||+||++..+..+...|+.. ++. +..+.++.+++..+. ...||+||+|+.+|+.+|+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--------------~~~~dlvi~d~~l~~~~g~~~ 73 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ--------------HNKVDAIFLDINIPSLDGVLL 73 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH--------------HCCCSEEEECSSCSSSCHHHH
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH--------------hCCCCEEEEecCCCCCCHHHH
Confidence 3578999999999999999999875 787 458999999998873 346999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++.+++.. +..|+|++++.. +...++++.|+++|+.||++.+++...+.+++
T Consensus 74 ~~~l~~~~--~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 74 AQNISQFA--HKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLT 125 (143)
T ss_dssp HHHHTTST--TCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHccC--CCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHH
Confidence 99999753 466788888763 45678999999999999999999998887753
No 96
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.81 E-value=1.3e-19 Score=139.35 Aligned_cols=117 Identities=21% Similarity=0.349 Sum_probs=103.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHH-hcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLK-NSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~-~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+||||||++..+..+...|. ..|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~--------------~~~~dlvl~D~~mp~~~G~~~~~ 83 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN--------------QIKPTVILQDLVMPGVDGLTLLA 83 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH--------------HHCCSEEEEESBCSSSBHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH--------------hCCCCEEEEeCCCCCCCHHHHHH
Confidence 3579999999999999999996 45899999999999999873 24689999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+++....+.+|+|++|+..+.....++++.|+++||.||++..++...+..
T Consensus 84 ~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~ 135 (358)
T 3bre_A 84 AYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRY 135 (358)
T ss_dssp HHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHH
T ss_pred HHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHH
Confidence 9997543467999999999999989999999999999999999999876654
No 97
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.81 E-value=7.1e-19 Score=126.69 Aligned_cols=112 Identities=24% Similarity=0.304 Sum_probs=102.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
.+|||+||++..+..+...|+..| .+..+.++.+++..+ ..||++|+|+.||+++|+++++.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----------------~~~dlvllD~~lp~~~g~~~~~~l 65 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----------------EAFHVVVLDVMLPDYSGYEICRMI 65 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----------------SCCSEEEEESBCSSSBHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----------------CCCCEEEEeCCCCCCCHHHHHHHH
Confidence 589999999999999999999888 899999999988754 358999999999999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 66 r~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 114 (220)
T 1p2f_A 66 KETR--PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRF 114 (220)
T ss_dssp HHHC--TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhcC--CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 9864 589999999998988999999999999999999999999888765
No 98
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.81 E-value=4.5e-21 Score=125.71 Aligned_cols=116 Identities=28% Similarity=0.404 Sum_probs=103.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.+|+++|+++++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------~~~~dlvi~d~~~~~~~g~~~~~~ 68 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA--------------SKTPDVLLSDIRMPGMDGLALLKQ 68 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS--------------SCCCSCEEECSCSSHHHHCSTHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--------------cCCCCEEEEeeecCCCCHHHHHHH
Confidence 467999999999999999999988999999999999998873 456999999999999999999999
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+++.. +.+|+|++++..+.....++++.|+++|+.||++.+++...+.++
T Consensus 69 l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 118 (124)
T 1dc7_A 69 IKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 (124)
T ss_dssp HHHHC--TTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHH
T ss_pred HHhhC--CCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHH
Confidence 98754 578999999887777778899999999999999999999888764
No 99
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.80 E-value=1.1e-18 Score=120.66 Aligned_cols=115 Identities=28% Similarity=0.345 Sum_probs=95.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC-c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSA-C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~-~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+|||+||++..+..++.+|+..+ + .+..+.++.+++..+. ...||+||+|+.||+++|++++
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~--------------~~~~dlvilD~~l~~~~g~~l~ 90 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI--------------ELKPDVITMDIEMPNLNGIEAL 90 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH--------------HHCCSEEEECSSCSSSCHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc--------------cCCCCEEEEeCCCCCCCHHHHH
Confidence 4689999999999999999999764 3 3557999999998873 2459999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCChh--hHHHHHHhcCcccccCCCC---------hhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPT--RINECLEEGAQMFMLKPLK---------PSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~--~~~~a~~~ga~~~l~KP~~---------~~~l~~~~~~~ 151 (153)
+.|++.. + +|+|+++...+.. ...++++.|+++||.||++ ..++.+.+.+.
T Consensus 91 ~~lr~~~--~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~ 152 (164)
T 3t8y_A 91 KLIMKKA--P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQA 152 (164)
T ss_dssp HHHHHHS--C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHH
T ss_pred HHHHhcC--C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHH
Confidence 9999864 3 7999999866543 5678999999999999999 45665555543
No 100
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.80 E-value=4.1e-19 Score=119.33 Aligned_cols=116 Identities=22% Similarity=0.395 Sum_probs=97.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKK 99 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~ 99 (153)
..+|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||++|+|+.||+++|+++++.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~--------------~~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ--------------NRQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH--------------HSCCSEEEECTTCCSSCHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh--------------cCCCCEEEEeCCCCCCcHHHHHHH
Confidence 368999999999999999999988999999999999998873 246899999999999999999999
Q ss_pred HHhcc---CCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 100 IKESS---VMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 100 lr~~~---~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
|++.. ..+.+|++++++........ ..|+++|+.||++.++|...+.+++
T Consensus 76 l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~ 128 (140)
T 3c97_A 76 IRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCH 128 (140)
T ss_dssp HHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHh
Confidence 98631 12568899998865444322 6899999999999999998887753
No 101
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.80 E-value=8.5e-20 Score=132.49 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=102.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-cE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSA-CK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~-~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
++|||+||++..+..+..+|+..+ +. +..+.++.+++..+. ...||+||+|+.||+++|+++++
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~--------------~~~~dlvllD~~lp~~~g~~~~~ 67 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP--------------AARPDVAVLDVRLPDGNGIELCR 67 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH--------------HHCCSEEEECSEETTEEHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh--------------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 479999999999999999999876 87 457999999998873 23589999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+++.. +.+|+|++|+..+.....++++.|+++|+.||++.+++...+.++
T Consensus 68 ~lr~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 118 (225)
T 3c3w_A 68 DLLSRM--PDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDV 118 (225)
T ss_dssp HHHHHC--TTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--CCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 999854 689999999998999999999999999999999999999877764
No 102
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.80 E-value=7.8e-20 Score=132.50 Aligned_cols=118 Identities=8% Similarity=0.036 Sum_probs=99.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-cCcEEEE-ecCHHHHHHH-hchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN-SACKVTT-AENGMRALEF-LGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~-~~~~v~~-~~~~~~a~~~-l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
+..+||||||++..+..+..+|+. .|+.+.. +.++.+++.. + ....||+||+|+.||+++|++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~dlvllD~~mp~~~G~~ 71 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP--------------ESRSIQMLVIDYSRISDDVLT 71 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS--------------GGGGCCEEEEEGGGCCHHHHH
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh--------------hccCCCEEEEeCCCCCCCHHH
Confidence 357899999999999999999984 6887754 4555555543 3 135699999999999999999
Q ss_pred HHHHHHh-ccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 96 LLKKIKE-SSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 96 ~~~~lr~-~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++++++ .. +.+|+|++|+..+......+++.|+++|+.||++++++...+.+++
T Consensus 72 ~~~~lr~~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 127 (225)
T 3klo_A 72 DYSSFKHISC--PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKIL 127 (225)
T ss_dssp HHHHHHHHHC--TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHH
Confidence 9999997 44 6899999999888888889999999999999999999998887653
No 103
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.80 E-value=2.4e-19 Score=140.54 Aligned_cols=117 Identities=24% Similarity=0.298 Sum_probs=99.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKN-SACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+||||||++..+..+..+|+. .++.+..+.++.++++.+.. ...||+||+|+.||+++|+++++
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~-------------~~~~DlvllDi~mP~~dG~ell~ 69 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILES-------------CGHVDIAICDLQMSGMDGLAFLR 69 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHH-------------HSCEEEEEECSSCSSSCHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhh-------------CCCCCEEEEeCCCCCCCHHHHHH
Confidence 46899999999999999999997 57899999999999998831 13699999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCCh-----hhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIP-----TRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~-----~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++++.. +..|||++|..... ....+++..|+++|+.||++.+++...+.++
T Consensus 70 ~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~ 125 (400)
T 3sy8_A 70 HASLSG--KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRY 125 (400)
T ss_dssp HHHHHT--CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHH
T ss_pred HHHhcC--CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHH
Confidence 999764 45667766666555 4567788999999999999999999888765
No 104
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.78 E-value=6e-18 Score=122.05 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=101.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++|||+||++..+..+..+|+..|+.+..+.++.+++..+. ...||++| ||+++|+++++.+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------~~~~dlvi----lp~~~g~~~~~~l 62 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD--------------IRNYDLVM----VSDKNALSFVSRI 62 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT--------------TSCCSEEE----ECCTTHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh--------------cCCCCEEE----eCCCCHHHHHHHH
Confidence 36999999999999999999999999999999999999883 45799999 8999999999999
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCC-ChhHHHHHHhhhc
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPL-KPSDVKKLTGHLI 152 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~-~~~~l~~~~~~~~ 152 (153)
++. ...+|+|++|+..+.....++++.|+++|+.||+ +.+++...+.+++
T Consensus 63 r~~--~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 63 KEK--HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp HHH--CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHT
T ss_pred HhC--CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHh
Confidence 975 1378999999999999999999999999999999 9999999887754
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.77 E-value=1.2e-18 Score=123.55 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=97.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
+..+|||+||++..+..+...|...||.+..+.++.+++ ...||+||+|+.||+++|. +++
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------------------~~~~dlvl~D~~mp~~~g~-l~~ 71 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------------------DVPVDVVFTSIFQNRHHDE-IAA 71 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------------------SSCCSEEEEECCSSTHHHH-HHH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------------------CCCCCEEEEeCCCCccchH-HHH
Confidence 457899999999999999999998899998887766543 1368999999999999998 888
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.++... +.+|+|++|+..+.+...++++.|+++||.||++..++...+.++
T Consensus 72 ~~~~~~--~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 72 LLAAGT--PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSA 122 (196)
T ss_dssp HHHHSC--TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHH
T ss_pred HHhccC--CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHH
Confidence 888753 578999999999999999999999999999999999998877653
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.73 E-value=4.3e-17 Score=125.98 Aligned_cols=105 Identities=30% Similarity=0.394 Sum_probs=91.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS-ACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~-~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..+|||+||++..+..+..+|+.. ++. +..+.++.++++.+. ...||++++|+.||+++|++++
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~--------------~~~pDlVllDi~mp~~dGlell 68 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--------------KFNPDVLTLDVEMPRMDGLDFL 68 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH--------------HHCCSEEEEECCCSSSCHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh--------------ccCCCEEEEECCCCCCCHHHHH
Confidence 468999999999999999999985 888 668999999998873 2358999999999999999999
Q ss_pred HHHHhccCCCCCcEEEEeCCCCh--hhHHHHHHhcCcccccCCCCh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIP--TRINECLEEGAQMFMLKPLKP 141 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~--~~~~~a~~~ga~~~l~KP~~~ 141 (153)
++|++.. + +|+|++|+..+. +...++++.|+++|+.||++.
T Consensus 69 ~~l~~~~--p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~ 111 (349)
T 1a2o_A 69 EKLMRLR--P-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLG 111 (349)
T ss_dssp HHHHHSS--C-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred HHHHhcC--C-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCc
Confidence 9999754 3 899999987664 347889999999999999984
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.73 E-value=1.6e-17 Score=123.21 Aligned_cols=104 Identities=18% Similarity=0.353 Sum_probs=85.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-cCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKN-SACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~-~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+||||||++..+..+...|.. .|+.+..++ +.+++..+ ....||+|++|+.||+++|+++++
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~-~~~~~~~~--------------~~~~~dlvllD~~mP~~~G~~~~~ 68 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFD-TLEGARHC--------------QGDEYVVALVDLTLPDAPSGEAVK 68 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEES-STGGGTTC--------------CTTTEEEEEEESCBTTBTTSHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEeC-hHHHHHHh--------------hcCCCcEEEEeCCCCCCCHHHHHH
Confidence 35899999999999999999875 477775544 44444433 235799999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPS 142 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~ 142 (153)
++|+. .+|||++|+..+.+...++++.||++|+.||....
T Consensus 69 ~lr~~----~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 69 VLLER----GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp HHHHT----TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred HHHhC----CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 99973 57999999999999999999999999999996543
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.68 E-value=1.3e-16 Score=133.97 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=97.5
Q ss_pred CeEEEEeCCH-HH-------HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--
Q 042079 21 PHVLAVDDSI-VD-------RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-- 90 (153)
Q Consensus 21 ~~iLiidd~~-~~-------~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-- 90 (153)
++||||||+. .. ++.+...|++.||+|..+.++.+++..+. ....||+||+|+.||+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~-------------~~~~~d~vilDi~lp~~~ 67 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILS-------------SNEAIDCLMFSYQMEHPD 67 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-------------TTCCCSEEEEECCCCSHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-------------cCCCCcEEEEeCCCCccc
Confidence 3799999999 88 89999999999999999999999999883 1235999999999999
Q ss_pred --CCHHHHHHHHHhccCCCCCcEEEEeCCCC-hhhHHHHHHhcCcccccCCCChhH-HH
Q 042079 91 --MTGYELLKKIKESSVMKEVPVVVVSSENI-PTRINECLEEGAQMFMLKPLKPSD-VK 145 (153)
Q Consensus 91 --~~g~~~~~~lr~~~~~~~~pii~~t~~~~-~~~~~~a~~~ga~~~l~KP~~~~~-l~ 145 (153)
++|++++++||+.. +.+|||++|+..+ .+.....+..|+++|+.||++..+ +.
T Consensus 68 ~~~~G~~ll~~iR~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~ 124 (755)
T 2vyc_A 68 EHQNVRQLIGKLHERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIA 124 (755)
T ss_dssp HHHHHHHHHHHHHHHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHH
T ss_pred ccccHHHHHHHHHHhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHH
Confidence 99999999999865 5799999998766 666778899999999999999999 54
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.22 E-value=5.3e-10 Score=88.46 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=93.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
...++++++++......+...+.. .+.+....+..++.... ...||++++|+.||.++|+++++
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~~---------------~~~~dlil~D~~mp~~dG~~~~~ 214 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKISA---------------GGPVDLVIVNAAAKNFDGLRFTA 214 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHHH---------------HSSCSEEEEETTCSSSCHHHHHH
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhhc---------------cCCCCEEEEecCCCCCcHHHHHH
Confidence 346899999999888888777764 45666777777764221 24589999999999999999999
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
.+|.......+|+++++..........+++.|+++|+.||++..++...+.
T Consensus 215 ~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~ 265 (459)
T 1w25_A 215 ALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVK 265 (459)
T ss_dssp HHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHH
T ss_pred HHHhCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHH
Confidence 999765556789999999988888889999999999999999988765443
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.17 E-value=1.1e-11 Score=89.37 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=69.8
Q ss_pred cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHH
Q 042079 45 CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRIN 124 (153)
Q Consensus 45 ~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~ 124 (153)
+.|..+.++.++++.+. ...||++|+|+.||+++|+++++.+++.. +..++++++.....+...
T Consensus 6 ~~v~~~~~~~~a~~~~~--------------~~~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~ 69 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK--------------ELKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVI 69 (237)
T ss_dssp EEEECCCSSSTTHHHHH--------------HHCCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHH
T ss_pred EEEEECCCHHHHHHHHH--------------hcCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHH
Confidence 45666888888888773 23589999999999999999999999754 344555566555578888
Q ss_pred HHHHhcCcccccCC--CChhHHHHHHhh
Q 042079 125 ECLEEGAQMFMLKP--LKPSDVKKLTGH 150 (153)
Q Consensus 125 ~a~~~ga~~~l~KP--~~~~~l~~~~~~ 150 (153)
++++.|+++|+.|| ++..++...+.+
T Consensus 70 ~~~~~Ga~~~l~kp~~~~~~~l~~~i~~ 97 (237)
T 3cwo_X 70 EAIKAGAKDFIVNTAAVENPSLITQIAQ 97 (237)
T ss_dssp HHHHTTCCEEEESHHHHHCTHHHHHHHH
T ss_pred HHHHCCHHheEeCCcccChHHHHHHHHH
Confidence 99999999999999 676676654443
No 111
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=98.09 E-value=3.6e-05 Score=48.31 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=78.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+..||++..|-....+++.++....|.+....... .+...|+|+|++.+-..+
T Consensus 11 ~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~--------------------~e~~AdlIfCEYlLLPe~------ 64 (121)
T 3q7r_A 11 GPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK--------------------QELSADLVVCEYSLLPRE------ 64 (121)
T ss_dssp CCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC--------------------CCTTEEEEEEEGGGSCTT------
T ss_pred CCcEEEEEecCchhhHHHHHhcCCcceeEEeccccC--------------------CcccceeEEEeeecChHH------
Confidence 346799999999999999999977778887765422 235679999998654322
Q ss_pred HHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 99 KIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+...+.....-+|++-.-=+++...+.++.|+. ||.+|+++.-++.+++..
T Consensus 65 -ifS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraF 115 (121)
T 3q7r_A 65 -IRSPKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLF 115 (121)
T ss_dssp -CCCCTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHH
T ss_pred -hcCCCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHH
Confidence 122222234456667666678888999999999 999999999999988763
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.63 E-value=0.00019 Score=52.29 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
....+|||++|+...+..+..+|...|+.+..+.+ . ....+|++++|+.++...+.
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~--------------~~~~~~~ii~d~~~~~~~~~--- 64 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------Q--------------EPTPEDVLITDEVVSKKWQG--- 64 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------C--------------CCCTTCEEEEESSCSCCCCS---
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------C--------------CCCcCcEEEEcCCCcccccc---
Confidence 45689999999999999999999999999988764 1 12468999999999875321
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..++.++....... ...+...|+.+|+.+.++..++.++
T Consensus 65 -----------~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~ 103 (254)
T 2ayx_A 65 -----------RAVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARI 103 (254)
T ss_dssp -----------SEEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHH
T ss_pred -----------ceEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHH
Confidence 12444444321110 1223457888999988888777654
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.45 E-value=8.3e-05 Score=62.22 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEE
Q 042079 33 RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVV 112 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii 112 (153)
.+.|...|++.||+|..+.+..+++..+.. ...+++|++|+.++ +.+++++||+++ .++||+
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~-------------~~~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVF 80 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIEN-------------NARLCGVIFDWDKY---NLELCEEISKMN--ENLPLY 80 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHH-------------CTTEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEE
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-------------CCCceEEEEecccc---HHHHHHHHHHhC--CCCCEE
Confidence 355667788899999999999999998842 34689999999885 688999999876 689999
Q ss_pred EEeCCCChhhHHHHHHhcCcccccCCCChhHH
Q 042079 113 VVSSENIPTRINECLEEGAQMFMLKPLKPSDV 144 (153)
Q Consensus 113 ~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l 144 (153)
+++...+.....-..-.++++|+.+..+..++
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (715)
T 3n75_A 81 AFANTYSTLDVSLNDLRLQISFFEYALGAAED 112 (715)
T ss_dssp EECCTTCCCCGGGTTSCCEEEEECCCTTCHHH
T ss_pred EEecCCcccccchhhhhccCeEEEeCCCCHHH
Confidence 99987543322111124677888876654444
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.17 E-value=0.014 Score=39.74 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAV----DDSIVDRKIVENLLKNSACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
..++|++. |.|..-...+..+|+..||+|... .+.++.++.+. ...+|+|.+...+...
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~--------------~~~~diV~lS~~~~~~ 82 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV--------------QEDVDVIGVSILNGAH 82 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH--------------HTTCSEEEEEESSSCH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------hcCCCEEEEEeechhh
Confidence 35678877 778888899999999999998753 35556666552 3578999998776642
Q ss_pred --CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 92 --TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 92 --~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
...++++.|++... ++++|+ +.+.........+.+.|++.++..--+..+..+.+.+
T Consensus 83 ~~~~~~~i~~L~~~g~-~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~ 141 (161)
T 2yxb_A 83 LHLMKRLMAKLRELGA-DDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRK 141 (161)
T ss_dssp HHHHHHHHHHHHHTTC-TTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHH
Confidence 34566777877542 356665 4554445555567789999755443444455444443
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.85 E-value=0.0029 Score=44.79 Aligned_cols=69 Identities=12% Similarity=0.231 Sum_probs=53.5
Q ss_pred ccEEEEeC-CCCCCCH--HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccCCCChhHHHHHHh
Q 042079 79 VNLVITDY-CMPGMTG--YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLKPLKPSDVKKLTG 149 (153)
Q Consensus 79 ~dlii~D~-~~~~~~g--~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~KP~~~~~l~~~~~ 149 (153)
.++++.+. .++.++| .+.+++++.. .+.|+|.+++....+...++++.|++++ ..+|+++.++.+.+.
T Consensus 145 ~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 145 GEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLK 221 (237)
T ss_dssp SEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred CeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHH
Confidence 45888886 5565666 4456666553 4789999999999999999999999997 489999999987664
Q ss_pred h
Q 042079 150 H 150 (153)
Q Consensus 150 ~ 150 (153)
.
T Consensus 222 ~ 222 (237)
T 3cwo_X 222 K 222 (237)
T ss_dssp T
T ss_pred H
Confidence 3
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.38 E-value=0.21 Score=32.82 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=67.1
Q ss_pred eCCHHHHHHHHHHHHhcCcEEE---EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHH
Q 042079 27 DDSIVDRKIVENLLKNSACKVT---TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIK 101 (153)
Q Consensus 27 dd~~~~~~~l~~~l~~~~~~v~---~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr 101 (153)
|-|..-...+..+|+..||+|. ...+.++.++... ...+|+|.+...+... ...++++.|+
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~--------------~~~~d~v~lS~~~~~~~~~~~~~i~~l~ 79 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI--------------ETKADAILVSSLYGQGEIDCKGLRQKCD 79 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH--------------HHTCSEEEEEECSSTHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------hcCCCEEEEEecCcCcHHHHHHHHHHHH
Confidence 3466667788899999999877 4456777666663 2468999998877542 2345677787
Q ss_pred hccCCCCCcEEEEeCCC-C-hh----hHHHHHHhcCcccccCCCChhHHHH
Q 042079 102 ESSVMKEVPVVVVSSEN-I-PT----RINECLEEGAQMFMLKPLKPSDVKK 146 (153)
Q Consensus 102 ~~~~~~~~pii~~t~~~-~-~~----~~~~a~~~ga~~~l~KP~~~~~l~~ 146 (153)
+... ++++++ +.+.. . .+ ....+.+.|++.|+.---+..++.+
T Consensus 80 ~~g~-~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~ 128 (137)
T 1ccw_A 80 EAGL-EGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIA 128 (137)
T ss_dssp HTTC-TTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHH
T ss_pred hcCC-CCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHH
Confidence 7542 356665 44432 1 11 1345789999998865555555543
No 117
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=94.97 E-value=0.41 Score=35.12 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=55.3
Q ss_pred HHHHHhcCcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-----CCCHHHHHHHHHhccCCCCC
Q 042079 37 ENLLKNSACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-----GMTGYELLKKIKESSVMKEV 109 (153)
Q Consensus 37 ~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-----~~~g~~~~~~lr~~~~~~~~ 109 (153)
.+.|.+.|+.+. +..+...+-.... -.+++| +.+..| +...+++++.+++. .++
T Consensus 128 a~~L~~~Gf~Vlpy~~dd~~~akrl~~---------------~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~v 188 (265)
T 1wv2_A 128 AEQLVKDGFDVMVYTSDDPIIARQLAE---------------IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKV 188 (265)
T ss_dssp HHHHHTTTCEEEEEECSCHHHHHHHHH---------------SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSS
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHH---------------hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCC
Confidence 344556788766 5666666544431 346777 443332 12347899999874 478
Q ss_pred cEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 110 PVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 110 pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
|||.=.+-.++++...+++.|++..+.
T Consensus 189 PVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 189 PVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp CBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 999877778899999999999999753
No 118
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=94.81 E-value=0.27 Score=34.51 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=65.1
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
..+|++. |-|..-...+..+|+..||+|.... ...+.++.+. ..+||+|.+-..++..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~--------------~~~~d~v~lS~~~~~~~ 153 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK--------------KYQPDIVGMSALLTTTM 153 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH--------------HHCCSEEEEECCSGGGT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEeccccccH
Confidence 4567777 6677888899999999999988543 3344444442 2468999998876643
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
...++++.+|+....+++|+++-....+.+. +.+.|++.|-.
T Consensus 154 ~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 154 MNMKSTIDALIAAGLRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp HHHHHHHHHHHHTTCGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 2456677787754323577765544444332 35679987753
No 119
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=94.80 E-value=0.19 Score=35.71 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=66.6
Q ss_pred CCCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEE--eCCCC
Q 042079 19 KPPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVIT--DYCMP 89 (153)
Q Consensus 19 ~~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~--D~~~~ 89 (153)
+..++++. |-|..=...+..+|+..||+|.... ...+.++.+. .+++|+|.+ ...+.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~--------------~~~~d~v~l~~S~l~~ 156 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAA--------------KHKGEKVLLVGSALMT 156 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHH--------------HTTTSCEEEEEECSSH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHH--------------HcCCCEEEEEchhccc
Confidence 34677776 6688888889999999999987543 4455555552 357899999 77665
Q ss_pred C-C-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 90 G-M-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 90 ~-~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
. + ...++++.+++.....++|+++-....+++ -+.+.|+|.|-.
T Consensus 157 ~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~---~a~~iGad~~~~ 202 (215)
T 3ezx_A 157 TSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDK---WIEEIGADATAE 202 (215)
T ss_dssp HHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHH---HHHHHTCCBCCS
T ss_pred CcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHH---HHHHhCCeEEEC
Confidence 3 2 245677788876532357776544444443 344679998853
No 120
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=94.17 E-value=0.71 Score=33.08 Aligned_cols=86 Identities=10% Similarity=0.144 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC------CCCCCHHHHHHHHHhcc
Q 042079 32 DRKIVENLLKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC------MPGMTGYELLKKIKESS 104 (153)
Q Consensus 32 ~~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~------~~~~~g~~~~~~lr~~~ 104 (153)
....+-..+++.|..+ ..+.+.+++..... ..+|+|.+... .+...++++++++++.
T Consensus 117 ~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---------------~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~- 180 (229)
T 3q58_A 117 DIDSLLTRIRLHGLLAMADCSTVNEGISCHQ---------------KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA- 180 (229)
T ss_dssp CHHHHHHHHHHTTCEEEEECSSHHHHHHHHH---------------TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHHh---------------CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-
Confidence 3334444455556544 46778888766552 35888864321 1234568888988862
Q ss_pred CCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 105 VMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 105 ~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++|+|.-.+-.+.+...++++.|++.++.
T Consensus 181 ---~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 181 ---GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp ---TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ---CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 68999888877899999999999998753
No 121
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=93.31 E-value=1.3 Score=31.81 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC------CCCCCHHHHHHHHHhcc
Q 042079 32 DRKIVENLLKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC------MPGMTGYELLKKIKESS 104 (153)
Q Consensus 32 ~~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~------~~~~~g~~~~~~lr~~~ 104 (153)
....+...+++.|..+ ..+.+..++..... ..+|+|.+... ......+++++++++.
T Consensus 117 ~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---------------~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~- 180 (232)
T 3igs_A 117 AVEALLARIHHHHLLTMADCSSVDDGLACQR---------------LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA- 180 (232)
T ss_dssp CHHHHHHHHHHTTCEEEEECCSHHHHHHHHH---------------TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-
T ss_pred HHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh---------------CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-
Confidence 3334444455556544 45778877766542 35788864321 1223468889998863
Q ss_pred CCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 105 VMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 105 ~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++|+|.-.+-.+.+...++++.|++.++.
T Consensus 181 ---~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 181 ---GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp ---TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ---CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 68999888777899999999999998753
No 122
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=93.30 E-value=1.4 Score=31.93 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=65.3
Q ss_pred CCCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAV----DDSIVDRKIVENLLKNSACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
...+|++. |-|..-...+..+|+..||+|... -...+.++.+. ...+|+|.+-..++..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~--------------~~~~d~V~lS~l~~~~ 187 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQ--------------KEKPIMLTGTALMTTT 187 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHH--------------HHCCSEEEEECCCTTT
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEEeeccCC
Confidence 34667777 567788888999999999987532 34444445442 2468999998876643
Q ss_pred --CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 92 --TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 92 --~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
...++++.|++.. .++||++-....+.+. +...|++.|-.-.
T Consensus 188 ~~~~~~~i~~l~~~~--~~~~v~vGG~~~~~~~---~~~igad~~~~da 231 (258)
T 2i2x_B 188 MYAFKEVNDMLLENG--IKIPFACGGGAVNQDF---VSQFALGVYGEEA 231 (258)
T ss_dssp TTHHHHHHHHHHTTT--CCCCEEEESTTCCHHH---HHTSTTEEECSST
T ss_pred HHHHHHHHHHHHhcC--CCCcEEEECccCCHHH---HHHcCCeEEECCH
Confidence 2456778888754 3577765444434332 2367887775433
No 123
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=90.77 E-value=2 Score=31.04 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=49.9
Q ss_pred EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-------CCHHHHHHHHHhccCCCCCcEEEEeCCCCh
Q 042079 48 TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-------MTGYELLKKIKESSVMKEVPVVVVSSENIP 120 (153)
Q Consensus 48 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 120 (153)
.++.+..|+..... ..+|+|.+.-..|. .-|++.++++++.. ..++|++.+.+- +.
T Consensus 140 ~S~ht~~Ea~~A~~---------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~ 202 (243)
T 3o63_A 140 RSTHDPDQVAAAAA---------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NA 202 (243)
T ss_dssp EEECSHHHHHHHHH---------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CT
T ss_pred EeCCCHHHHHHHhh---------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CH
Confidence 36788888766542 35899998764443 23688888887631 137899988776 67
Q ss_pred hhHHHHHHhcCcccc
Q 042079 121 TRINECLEEGAQMFM 135 (153)
Q Consensus 121 ~~~~~a~~~ga~~~l 135 (153)
+.+.++++.|++.+.
T Consensus 203 ~ni~~~~~aGa~gva 217 (243)
T 3o63_A 203 QRLPAVLDAGARRIV 217 (243)
T ss_dssp TTHHHHHHTTCCCEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 778899999998864
No 124
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=90.58 E-value=0.75 Score=33.82 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHhcCcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC-----HHHHHHHHHhccCCCC-CcE
Q 042079 40 LKNSACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT-----GYELLKKIKESSVMKE-VPV 111 (153)
Q Consensus 40 l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~-----g~~~~~~lr~~~~~~~-~pi 111 (153)
|.+.||.+. +..+...+-.+.. -.+++| +.+..|-.. ..++++.+++.. .+ +||
T Consensus 120 L~k~Gf~Vlpy~~~D~~~ak~l~~---------------~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPV 181 (268)
T 2htm_A 120 LIEEDFLVLPYMGPDLVLAKRLAA---------------LGTATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPV 181 (268)
T ss_dssp HHHTTCEECCEECSCHHHHHHHHH---------------HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCB
T ss_pred HHHCCCEEeeccCCCHHHHHHHHh---------------cCCCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeE
Confidence 445688755 4456654433321 235666 565444222 356788888732 36 899
Q ss_pred EEEeCCCChhhHHHHHHhcCccccc
Q 042079 112 VVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 112 i~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
|.=..-.+++++..+++.|++..+.
T Consensus 182 I~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 182 VVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp EEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9877778899999999999999753
No 125
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=90.10 E-value=3.1 Score=30.45 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=66.6
Q ss_pred CeEEEE----eCCHHHHHHHHHH--------HHhc-CcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEE
Q 042079 21 PHVLAV----DDSIVDRKIVENL--------LKNS-ACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVIT 84 (153)
Q Consensus 21 ~~iLii----dd~~~~~~~l~~~--------l~~~-~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~ 84 (153)
.+|++. |-|..=.+.+..+ |+.. ||+|... -..++.++... ..++|+|.+
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~--------------e~~~d~Vgl 186 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAV--------------ELEADVLLV 186 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHH--------------HTTCSEEEE
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHH--------------HcCCCEEEE
Confidence 455554 5676666777777 8888 9998642 34555555542 357999999
Q ss_pred eCCCCCC-----CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHH
Q 042079 85 DYCMPGM-----TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVK 145 (153)
Q Consensus 85 D~~~~~~-----~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~ 145 (153)
...+... .-.++++.|++.....+++++ +.+.... ..-+.+.|++.|..--....++.
T Consensus 187 S~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vi-vGG~~~~--~~~a~~iGad~~~~da~~~~~~a 249 (262)
T 1xrs_B 187 SQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLL-CGGPRIN--NEIAKELGYDAGFGPGRFADDVA 249 (262)
T ss_dssp ECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEE-EECTTCC--HHHHHTTTCSEEECTTCCHHHHH
T ss_pred EeecCCccchHHHHHHHHHHHHhcCCCCCCEEE-EECCcCC--HHHHHHcCCeEEECCchHHHHHH
Confidence 9888762 233466777765432236654 4443322 23366889998876555555543
No 126
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=89.74 E-value=1.8 Score=31.54 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=48.5
Q ss_pred CcccEEEEeCCCCC--CC--------------------HHHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHH
Q 042079 77 TKVNLVITDYCMPG--MT--------------------GYELLKKIKESSVMKEVPVVVVSSENI------PTRINECLE 128 (153)
Q Consensus 77 ~~~dlii~D~~~~~--~~--------------------g~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~ 128 (153)
...|+|.+++-..+ .+ .+++++.+|+.. +.+|+++++..+. ......+.+
T Consensus 43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pi~~m~y~n~v~~~g~~~f~~~~~~ 120 (262)
T 2ekc_A 43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEF--PDIPFLLMTYYNPIFRIGLEKFCRLSRE 120 (262)
T ss_dssp TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTSCEEEECCHHHHHHHCHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--CCCCEEEEecCcHHHHhhHHHHHHHHHH
Confidence 35899998874432 22 345677787642 3789998753321 355577889
Q ss_pred hcCcccccCCCChhHHHHHHhh
Q 042079 129 EGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 129 ~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.|++.++.-.+..+++.+....
T Consensus 121 aG~dgvii~dl~~ee~~~~~~~ 142 (262)
T 2ekc_A 121 KGIDGFIVPDLPPEEAEELKAV 142 (262)
T ss_dssp TTCCEEECTTCCHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHH
Confidence 9999999888888877665543
No 127
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=89.69 E-value=4.8 Score=34.01 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=72.4
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
.++|++. |.|..-.+.+..+|+..||+|.... +.++.++... ...+|+|.+...+...
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~--------------e~~adiVglSsl~~~~~ 669 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAV--------------DADVHAVGVSTLAAGHK 669 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH--------------HTTCSEEEEEECSSCHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHH--------------HcCCCEEEEeeecHHHH
Confidence 4566665 3466667788889999999987543 4566666552 3568999887766542
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
...++++.|++... ..++| ++.+-........+.+.|++.|+..=-+..+..+.+
T Consensus 670 ~~~~~vi~~Lr~~G~-~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i 725 (762)
T 2xij_A 670 TLVPELIKELNSLGR-PDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQV 725 (762)
T ss_dssp HHHHHHHHHHHHTTC-TTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHH
Confidence 35667788887653 34444 344322233455678999999987444655555433
No 128
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=89.51 E-value=4.9 Score=29.47 Aligned_cols=88 Identities=8% Similarity=-0.036 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-C-CCHHHHHHHHHhccCCCCC
Q 042079 33 RKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-G-MTGYELLKKIKESSVMKEV 109 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~-~~g~~~~~~lr~~~~~~~~ 109 (153)
...+....+..|..+. .+++..++...+. ..+|+|-+.-... . ..+++.+++|.+.. ...+
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~---------------~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v-~~~~ 214 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALK---------------AGAKVIGVNARDLMTLDVDRDCFARIAPGL-PSSV 214 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHH---------------HTCSEEEEESBCTTTCCBCTTHHHHHGGGS-CTTS
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHH---------------CCCCEEEECCCcccccccCHHHHHHHHHhC-cccC
Confidence 3344455556787644 5778877655441 2478888763221 1 12356667776542 1268
Q ss_pred cEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 110 PVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 110 pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
|+|..++-.+.+.+.++.+.|++.++.
T Consensus 215 pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 215 IRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 888888877899999999999999865
No 129
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=89.16 E-value=3.2 Score=30.21 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=52.1
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~~~l~~~~~~~ 151 (153)
..+|.|++|+.-...+.-.+...++.... ...++++=.+..+...+..+++.|++.. ++|--+.++++++...+
T Consensus 36 ~g~D~vilDlEhav~~~~k~~~~l~a~~~-~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 36 AGLDYFIVDCEHAAYTFREINHLVSVAKN-AGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp TTCSEEEEESSSSCCCHHHHHHHHHHHHH-HTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred CCcCEEEEeccCCCCCHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 46999999998887776666666553221 2345565666667778899999999875 55566788888776554
No 130
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=88.90 E-value=5.6 Score=29.37 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=52.5
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~~~l~~~~~~~ 151 (153)
..+|.+++|+.-...+--.+...++.... ...++++=+...+...+..+++.|++.. +.|--+.++++++...+
T Consensus 59 ~GaD~v~lDlEh~~~~~~~~~~~l~a~~~-~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 59 AGFDWLLIDGEHAPNNVQTVLTQLQAIAP-YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp SCCSEEEEESSSSSCCHHHHHHHHHHHTT-SSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCccchHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 46999999997766665555555554322 2567777777777888899999999875 55556788888776543
No 131
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=88.47 E-value=1.4 Score=31.46 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
+++++.+|+.. ++|+.+++..+. .+....+.+.|++.++.-.....+..+++
T Consensus 69 ~~~i~~i~~~~---~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~ 126 (248)
T 1geq_A 69 FWIVKEFRRHS---STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFT 126 (248)
T ss_dssp HHHHHHHHTTC---CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHH
T ss_pred HHHHHHHHhhC---CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHH
Confidence 67788888642 578887774222 46777889999999887666555555443
No 132
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=88.29 E-value=0.59 Score=34.40 Aligned_cols=55 Identities=7% Similarity=0.295 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCC------hhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENI------PTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~------~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
+++++.+|+.. .++|+++++-.+. +....++.+.|++.++.-.+.+++..+....
T Consensus 83 ~~~v~~ir~~~--~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 83 FDIITKVRAQH--PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp HHHHHHHHHHC--TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHhcC--CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 56677777642 3689998875322 5567888999999998888887776655443
No 133
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=87.90 E-value=5.4 Score=33.52 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=71.6
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
.++|++. |.|..-.+.+..+|+..||+|.... +.++.++... ...+|+|.+...+...
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~--------------e~~adiVglSsl~~~~~ 661 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAV--------------EADVHVVGVSSLAGGHL 661 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHH--------------HTTCSEEEEEECSSCHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH--------------HcCCCEEEEeeecHhHH
Confidence 4566665 4566667888889999999987643 4566666552 3568999887766542
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHH
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVK 145 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~ 145 (153)
...++++.|++... ..++| ++.+-........+.+.|++.|+..=.+..++.
T Consensus 662 ~~~~~vi~~L~~~G~-~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a 714 (727)
T 1req_A 662 TLVPALRKELDKLGR-PDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESA 714 (727)
T ss_dssp HHHHHHHHHHHHTTC-TTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHH
Confidence 35667788887653 34444 444422333455678999999986545555543
No 134
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=86.48 E-value=1.4 Score=32.43 Aligned_cols=54 Identities=15% Similarity=0.401 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCC------CChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSE------NIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~------~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
+++++++|+.. .++|+++++-. .......++.+.|++.++.-.+.+++..+...
T Consensus 85 ~~~v~~~r~~~--~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~ 144 (271)
T 3nav_A 85 FELIAQIRARN--PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVA 144 (271)
T ss_dssp HHHHHHHHHHC--TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHH
T ss_pred HHHHHHHHhcC--CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Confidence 56777777643 47899998743 23556788899999999888787777655443
No 135
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=86.05 E-value=8 Score=28.09 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=51.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~~~l~~~~~~~ 151 (153)
..+|.+++|+.-...+.-.+...++.... ...++++=+...++..+..+++.|++.. +.|=-+.++++++...+
T Consensus 38 ~GaD~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 38 SGYDWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp TCCSEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 46999999997766665555555554222 2456777777777888889999999874 55556788888776544
No 136
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=84.90 E-value=8.3 Score=32.15 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCeEEEE----eCCHHHHHHH----HHHHHhcCcEEEEec---CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC
Q 042079 20 PPHVLAV----DDSIVDRKIV----ENLLKNSACKVTTAE---NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM 88 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l----~~~l~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~ 88 (153)
..+|++. |-|..=.+.+ ..+|+..||+|.... +.++.++.+. ...+|+|.+...+
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~--------------EedADVVGLSsLL 667 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAI--------------ELKADAILASTII 667 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHH--------------HTTCSEEEEECCC
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEeccc
Confidence 3567776 4455444333 467888999987433 5566666552 3579999999888
Q ss_pred CC----CC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHH
Q 042079 89 PG----MT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVK 145 (153)
Q Consensus 89 ~~----~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~ 145 (153)
.. +. --++++.|++......++|++=....+.+ -+.+.|++.|........++.
T Consensus 668 Tt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd---~AkeIGADa~f~DATeAVeVA 726 (763)
T 3kp1_A 668 SHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPE---VAVKQGVDAGFGRGSKGIHVA 726 (763)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHH
T ss_pred cCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHH---HHHHcCCcEEECCcchHHHHH
Confidence 76 22 34567778876542235555333233333 345899999887666555553
No 137
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=84.17 E-value=8.5 Score=26.76 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=45.9
Q ss_pred EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-------CCHHHHHHHHHhccCCCCCcEEEEeCCCChh
Q 042079 49 TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-------MTGYELLKKIKESSVMKEVPVVVVSSENIPT 121 (153)
Q Consensus 49 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~ 121 (153)
.+.+..++..... ...|.|+++...+. ..+++.++.+++.. ++|+++..+- +.+
T Consensus 116 sv~t~~~~~~a~~---------------~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI-~~~ 176 (221)
T 1yad_A 116 SVHSLEEAVQAEK---------------EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM-TPD 176 (221)
T ss_dssp EECSHHHHHHHHH---------------TTCSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESSC-CGG
T ss_pred EcCCHHHHHHHHh---------------CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHH
Confidence 5667777655441 34799998764332 23678888887642 6888877666 788
Q ss_pred hHHHHHHhcCccc
Q 042079 122 RINECLEEGAQMF 134 (153)
Q Consensus 122 ~~~~a~~~ga~~~ 134 (153)
.+.++++.|++.+
T Consensus 177 nv~~~~~~Ga~gv 189 (221)
T 1yad_A 177 RLRDVKQAGADGI 189 (221)
T ss_dssp GHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 8999999999865
No 138
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=83.65 E-value=0.72 Score=33.78 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=25.4
Q ss_pred CeEEEEeCC--HHHHHHHHHHHHhcCcEEEEecC
Q 042079 21 PHVLAVDDS--IVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 21 ~~iLiidd~--~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
+++|||+++ +.-...+...|+..|+.|.....
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~ 38 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPS 38 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECT
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecc
Confidence 579999988 55677888899999998887664
No 139
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=83.37 E-value=3.1 Score=31.66 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=47.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc---CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS---ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~---~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
...++.|+|.++...+.+..++.+. .+.+..+++.+...+... ++++|++++|-.+..
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~--------------~~~~dilli~e~~~~ 80 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVK--------------EYRIDVLIAEEDFNI 80 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHH--------------HHTCSEEEEETTCCC
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHh--------------cCCCCEEEEcchhhh
Confidence 4578999999999999999998753 578999999998888763 246899999876644
No 140
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=82.89 E-value=1.7 Score=31.73 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=47.5
Q ss_pred CcccEEEEeCCCC--CCC--------------------HHHHHHHHHhccCCCCCcEEEEeCCC------ChhhHHHHHH
Q 042079 77 TKVNLVITDYCMP--GMT--------------------GYELLKKIKESSVMKEVPVVVVSSEN------IPTRINECLE 128 (153)
Q Consensus 77 ~~~dlii~D~~~~--~~~--------------------g~~~~~~lr~~~~~~~~pii~~t~~~------~~~~~~~a~~ 128 (153)
...|.|-+++-.. -++ ++++++.+|+.. .++|+++++... .......+.+
T Consensus 43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~~~~~~~~~~ 120 (268)
T 1qop_A 43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH--PTIPIGLLMYANLVFNNGIDAFYARCEQ 120 (268)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SSSCEEEEECHHHHHTTCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEcccHHHHhhHHHHHHHHHH
Confidence 3478888887442 222 346678888752 367888775321 1466777899
Q ss_pred hcCcccccCCCChhHHHHHHhh
Q 042079 129 EGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 129 ~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.|++.++.-....+++.+.+..
T Consensus 121 aGadgii~~d~~~e~~~~~~~~ 142 (268)
T 1qop_A 121 VGVDSVLVADVPVEESAPFRQA 142 (268)
T ss_dssp HTCCEEEETTCCGGGCHHHHHH
T ss_pred cCCCEEEEcCCCHHHHHHHHHH
Confidence 9999988877777666555443
No 141
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=82.36 E-value=6.5 Score=27.93 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=39.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHH
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKK 146 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~ 146 (153)
.+++|=+. +...++++.++.+++.. +. .+|-...-.+.+...++.+.|++ |+..|-...++.+
T Consensus 38 Gi~~iEvt--~~t~~a~~~I~~l~~~~--p~-~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~~~evi~ 100 (217)
T 3lab_A 38 GVHLLEVT--LRTEAGLAAISAIKKAV--PE-AIVGAGTVCTADDFQKAIDAGAQ-FIVSPGLTPELIE 100 (217)
T ss_dssp TCCEEEEE--TTSTTHHHHHHHHHHHC--TT-SEEEEECCCSHHHHHHHHHHTCS-EEEESSCCHHHHH
T ss_pred CCCEEEEe--CCCccHHHHHHHHHHHC--CC-CeEeeccccCHHHHHHHHHcCCC-EEEeCCCcHHHHH
Confidence 34544444 33446888888888753 33 45555555577778888888886 5556655555544
No 142
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=82.00 E-value=2.7 Score=30.79 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred ccEEEEeCCCCC--CC--------------------HHHHHHHHHhccCCCCCcEEEEeCCC------ChhhHHHHHHhc
Q 042079 79 VNLVITDYCMPG--MT--------------------GYELLKKIKESSVMKEVPVVVVSSEN------IPTRINECLEEG 130 (153)
Q Consensus 79 ~dlii~D~~~~~--~~--------------------g~~~~~~lr~~~~~~~~pii~~t~~~------~~~~~~~a~~~g 130 (153)
.|+|.+++-..+ .+ .++.++.+|+. .++|+++++..+ .......+.+.|
T Consensus 43 aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG 119 (271)
T 1ujp_A 43 ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYLNPVLAWGPERFFGLFKQAG 119 (271)
T ss_dssp CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCHHHHHHHCHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCcHHHHhhHHHHHHHHHHcC
Confidence 899999864432 12 35667788764 368999875322 244566788999
Q ss_pred CcccccCCCChhHHHHHHh
Q 042079 131 AQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 131 a~~~l~KP~~~~~l~~~~~ 149 (153)
+++++.-.+..++..+...
T Consensus 120 ~dGviv~Dl~~ee~~~~~~ 138 (271)
T 1ujp_A 120 ATGVILPDLPPDEDPGLVR 138 (271)
T ss_dssp CCEEECTTCCGGGCHHHHH
T ss_pred CCEEEecCCCHHHHHHHHH
Confidence 9999887777776655443
No 143
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=81.59 E-value=11 Score=30.83 Aligned_cols=99 Identities=9% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhcCcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 20 PPHVLAV----DDSIVDRKIVENLLKNSACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 20 ~~~iLii----dd~~~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
..+|++. |-|..-...+..+|+..||+|... -...+.+..+. ...+|+|.+...+...
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~--------------~~~~diVgLS~l~t~~~ 163 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAK--------------EVNADLIGLSGLITPSL 163 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHH--------------HHTCSEEEEECCSTHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--------------HcCCCEEEEEecCCCCH
Confidence 4567776 567777888899999999998753 34455555442 2468999998877532
Q ss_pred -CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh-----cCccccc
Q 042079 92 -TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE-----GAQMFML 136 (153)
Q Consensus 92 -~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~-----ga~~~l~ 136 (153)
...++++.|++.. .++||++-....+.... .-+. |++.|-.
T Consensus 164 ~~m~~~i~~Lr~~g--~~i~ViVGGa~~~~~~a--~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 164 DEMVNVAKEMERQG--FTIPLLIGGATTSKAHT--AVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp HHHHHHHHHHHHTT--CCSCEEEESTTCCHHHH--HHHTGGGCSSCEEECC
T ss_pred HHHHHHHHHHHHcC--CCCeEEEEccccchhhh--hhhhhhcccCCeEEEC
Confidence 2345677787754 47887654444444432 1133 7877743
No 144
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=80.94 E-value=6.9 Score=26.86 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=38.2
Q ss_pred cccEEEEeCCCCC-------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCMPG-------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~~~-------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+|.++++...|. ..+++.++++++.. ++|+++..+-. .+.+.++.+.|++.+
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~~~~~~Ga~gv 187 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAREVLKTGVDGI 187 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHHHHHTTTCSEE
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHHHHHHcCCCEE
Confidence 4799998753442 34788888887643 67888766554 777888888998876
No 145
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=80.44 E-value=7.8 Score=27.43 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..+...+.. +. ...+..+.+..+. ....||+|++|... .+-..+
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-------------~~~~fD~V~~d~~~--~~~~~~ 152 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-------------ECPAFDLIFIDADK--PNNPHY 152 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-------------SCCCCSEEEECSCG--GGHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-------------CCCCeEEEEECCch--HHHHHH
Confidence 578999999999998888888766542 33 4555555444331 12479999998742 233456
Q ss_pred HHHHHhccCCCCCcEEEEe
Q 042079 97 LKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t 115 (153)
++.+.+.- .+.. ++++.
T Consensus 153 l~~~~~~L-kpGG-~lv~~ 169 (248)
T 3tfw_A 153 LRWALRYS-RPGT-LIIGD 169 (248)
T ss_dssp HHHHHHTC-CTTC-EEEEE
T ss_pred HHHHHHhc-CCCe-EEEEe
Confidence 66665432 2333 44443
No 146
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=79.49 E-value=7.3 Score=28.84 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=44.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~g~~~~~ 98 (153)
..++.++|.++.....+++-++...-.-....++.+++..+. +...++|+||+|---.. .....+++
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~------------~~~~~fdLVfiDPPYe~k~~~~~vl~ 180 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALL------------PPPEKRGLIFIDPSYERKEEYKEIPY 180 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHC------------SCTTSCEEEEECCCCCSTTHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhc------------CCCCCccEEEECCCCCCCcHHHHHHH
Confidence 367999999999998888777653322345667777776552 12346999999963332 23444555
Q ss_pred HHH
Q 042079 99 KIK 101 (153)
Q Consensus 99 ~lr 101 (153)
.|.
T Consensus 181 ~L~ 183 (283)
T 2oo3_A 181 AIK 183 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 147
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=79.38 E-value=15 Score=26.40 Aligned_cols=75 Identities=12% Similarity=0.016 Sum_probs=51.6
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCChhHHHHHHhhh
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~~~l~~~~~~~ 151 (153)
...+|.+++|+.-...+--++...++... ....++++=+...+...+..+++.|++.+ ++|--+.++++.+...+
T Consensus 38 ~~gaD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~~ 113 (256)
T 1dxe_A 38 LAGFDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVAST 113 (256)
T ss_dssp TSCCSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHHHHHHHHHh
Confidence 45699999998776544444444444322 23467777777777888889999999875 55566788887776544
No 148
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=79.26 E-value=14 Score=25.80 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=43.7
Q ss_pred CCeEEEEe------CCHHHHHHHHHHHHhcCcEEEEe----cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 20 PPHVLAVD------DSIVDRKIVENLLKNSACKVTTA----ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 20 ~~~iLiid------d~~~~~~~l~~~l~~~~~~v~~~----~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
..+|++|+ +.......+.+.+++.|+++... .+..+..+.+. ..|.|++ |
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~----------------~ad~I~l----~ 86 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR----------------KNDFIYV----T 86 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH----------------HSSEEEE----C
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH----------------hCCEEEE----C
Confidence 57899997 33346777889999999998887 36666555552 3588885 5
Q ss_pred CCCHHHHHHHHHh
Q 042079 90 GMTGYELLKKIKE 102 (153)
Q Consensus 90 ~~~g~~~~~~lr~ 102 (153)
+.+.+.+++.|++
T Consensus 87 GG~~~~l~~~L~~ 99 (206)
T 3l4e_A 87 GGNTFFLLQELKR 99 (206)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6666666665543
No 149
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=78.83 E-value=13 Score=25.53 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=28.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMR 55 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~ 55 (153)
.+|+|||=...+...+.+.|++.|+++....+.++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~ 37 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQV 37 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH
Confidence 46999997666667788889999999988887654
No 150
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=78.39 E-value=14 Score=27.82 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=33.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCC-hhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENI-PTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~-~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++--+....-|..+++.+. ..+|+|.-+...+ .+......+ .+++..|-+.+++.+.+.+++
T Consensus 278 aDv~vl~ss~~e~gg~~~lEAmA-----~G~PVI~~~~~~~~~e~~~~~~~---~G~l~~~~d~~~La~ai~~ll 344 (374)
T 2xci_A 278 GKIAIVGGTFVNIGGHNLLEPTC-----WGIPVIYGPYTHKVNDLKEFLEK---EGAGFEVKNETELVTKLTELL 344 (374)
T ss_dssp EEEEEECSSSSSSCCCCCHHHHT-----TTCCEEECSCCTTSHHHHHHHHH---TTCEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECCcccCCCCcCHHHHHH-----hCCCEEECCCccChHHHHHHHHH---CCCEEEeCCHHHHHHHHHHHH
Confidence 57766632222222334455443 3678874222222 222222223 356667778899988877764
No 151
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.11 E-value=9.4 Score=26.47 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=37.4
Q ss_pred cccEEEEeCCCCCC--------CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCMPGM--------TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~~~~--------~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..|.|.++--.|.. -|++.++++++.. ...+|++.+.+- +.+.+.++++.|++.+
T Consensus 107 GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~-~~~iPviaiGGI-~~~nv~~~~~~Ga~gV 169 (210)
T 3ceu_A 107 FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK-IIDSKVMALGGI-NEDNLLEIKDFGFGGA 169 (210)
T ss_dssp GSSEEEECCCC---------CCCCHHHHHHHHHTT-CSSTTEEEESSC-CTTTHHHHHHTTCSEE
T ss_pred CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCEEEECCC-CHHHHHHHHHhCCCEE
Confidence 47999887644322 3678888887631 036899887765 4778889999998765
No 152
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=78.05 E-value=16 Score=26.93 Aligned_cols=95 Identities=11% Similarity=0.063 Sum_probs=57.0
Q ss_pred eEEEEeCCHHHHH----HHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRK----IVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~----~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
-+||-|+|..... .++.+-+..+ .....+.+.+++.+.+. ...|+|++|-..| ..-.+
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~---------------aGaD~I~LDn~~~-~~~~~ 230 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLP---------------EKPELILLDNFAV-WQTQT 230 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGG---------------GCCSEEEEETCCH-HHHHH
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH---------------cCCCEEEECCCCH-HHHHH
Confidence 4677777654422 2333222223 23446778888877773 3579999997433 22334
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.++.++... +++ .+..++.-+.+.+.+..+.|+|.+.
T Consensus 231 ~v~~l~~~~--~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 231 AVQRRDSRA--PTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp HHHHHHHHC--TTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred HHHHhhccC--CCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 555555432 344 4456777788888888999987653
No 153
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=77.33 E-value=19 Score=26.47 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=63.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC-CCCCCCHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY-CMPGMTGYELL 97 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~-~~~~~~g~~~~ 97 (153)
+...|-+.-.++.....+.++|....|.+..+.+..+.++.+.. ..+.+|++++.. .. .-..++
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~------------~~e~iDcLvle~~~~---~~~~~~ 72 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQT------------HRDQIDCLILVAANP---SFRAVV 72 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHH------------STTSCSEEEEETTST---THHHHH
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHh------------ccccCCEEEEEeCCC---ccHHHH
Confidence 45667788888889999999998888999999998888887742 356899999886 33 356777
Q ss_pred HHHHhccCCCCCcEEEEeCC
Q 042079 98 KKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~ 117 (153)
..|.+.+. -.|+|++...
T Consensus 73 ~~L~~~g~--lLP~vil~~~ 90 (289)
T 1r8j_A 73 QQLCFEGV--VVPAIVVGDR 90 (289)
T ss_dssp HHHHHTTC--CCCEEEESCC
T ss_pred HHHHHcCc--cccEEEeccC
Confidence 88887653 4789887654
No 154
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=77.05 E-value=8.3 Score=27.40 Aligned_cols=98 Identities=10% Similarity=0.162 Sum_probs=57.7
Q ss_pred HHHHhcCcEEEEec--CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-----CCCCHHHHHHHHHhccCCCCCc
Q 042079 38 NLLKNSACKVTTAE--NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-----PGMTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 38 ~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-----~~~~g~~~~~~lr~~~~~~~~p 110 (153)
..|+..|+.+..-. ++...+..+. .-++|.|=+|-.+ .+.....+++.+........+.
T Consensus 146 ~~l~~~G~~ialDdfG~g~ssl~~L~--------------~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~ 211 (259)
T 3s83_A 146 KTLRDAGAGLALDDFGTGFSSLSYLT--------------RLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLE 211 (259)
T ss_dssp HHHHHHTCEEEEECC---CHHHHHHH--------------HSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCCEEEEECCCCCchhHHHHH--------------hCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCe
Confidence 44667788766533 4444455552 2468999998532 1222344555543221112344
Q ss_pred EEEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHHHHHHhh
Q 042079 111 VVVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l~~~~~~ 150 (153)
+| ..+-.+.+....+.+.|++ + |+.||.+.+++...+..
T Consensus 212 vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 212 VV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp EE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred EE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 43 5555677777778888874 4 47799999999887654
No 155
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=76.85 E-value=16 Score=26.43 Aligned_cols=41 Identities=29% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
+.+.++++++. .++|+++..+-.+.+.+.++++.|++.++.
T Consensus 166 ~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 166 NPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 47888998873 378999888777889999999999988643
No 156
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=76.05 E-value=21 Score=26.37 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=41.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++--.-...-|..+++.+.. .+|+|. +.. ....+....|..+++..|-+.+++.+.+.+++
T Consensus 283 adv~v~ps~~~e~~~~~~~Ea~a~-----G~PvI~-~~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~ 347 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMAA-----GTAVVA-SDL---DAFRRVLADGDAGRLVPVDDADGMAAALIGIL 347 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHHH-----TCEEEE-CCC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchHHHHHHHc-----CCCEEE-ecC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 466665421123345667777653 457663 321 34556677788899999999999988887753
No 157
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=75.74 E-value=7.2 Score=26.90 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CCCHHHHHHHHHhccCCC-CCcEEEEeC
Q 042079 40 LKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GMTGYELLKKIKESSVMK-EVPVVVVSS 116 (153)
Q Consensus 40 l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~~g~~~~~~lr~~~~~~-~~pii~~t~ 116 (153)
.+..|..+ ..+.+..++..... ..+|+|.+ .| +..|.+.++++++.. + ++|+++..+
T Consensus 97 ~~~~g~~~~~g~~t~~e~~~a~~---------------~G~d~v~v---~~t~~~g~~~~~~l~~~~--~~~ipvia~GG 156 (212)
T 2v82_A 97 AVGYGMTVCPGCATATEAFTALE---------------AGAQALKI---FPSSAFGPQYIKALKAVL--PSDIAVFAVGG 156 (212)
T ss_dssp HHHTTCEEECEECSHHHHHHHHH---------------TTCSEEEE---TTHHHHCHHHHHHHHTTS--CTTCEEEEESS
T ss_pred HHHcCCCEEeecCCHHHHHHHHH---------------CCCCEEEE---ecCCCCCHHHHHHHHHhc--cCCCeEEEeCC
Confidence 44445432 23677777655431 34788876 22 123678888887643 2 588887766
Q ss_pred CCChhhHHHHHHhcCcccc
Q 042079 117 ENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 117 ~~~~~~~~~a~~~ga~~~l 135 (153)
-. .+.+.++++.|++.+.
T Consensus 157 I~-~~~i~~~~~~Ga~gv~ 174 (212)
T 2v82_A 157 VT-PENLAQWIDAGCAGAG 174 (212)
T ss_dssp CC-TTTHHHHHHHTCSEEE
T ss_pred CC-HHHHHHHHHcCCCEEE
Confidence 54 7788889999998875
No 158
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=74.68 E-value=18 Score=28.02 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=36.4
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
...+++|+-+..+ .....++..+|+.. +.++||+-+. +........+.|++..+.
T Consensus 67 ~~A~~viv~~~~~-~~n~~i~~~ar~~~--p~~~Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 67 AKAEVLINAIDDP-QTNLQLTEMVKEHF--PHLQIIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp TTCSEEEECCSSH-HHHHHHHHHHHHHC--TTCEEEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred CccCEEEECCCCh-HHHHHHHHHHHHhC--CCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 4578888765432 23455566667654 5677877774 567777788999997653
No 159
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=73.91 E-value=11 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=42.4
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
-+.++++|+.. +..||.+-+. +.+...+|++.|+|..+.--++++++++++..+
T Consensus 195 ~~Av~~ar~~~--p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 195 TLAIQRLRKNL--KNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHHS--SSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 45667777653 4678877664 568888999999999999999999999887653
No 160
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=73.86 E-value=19 Score=24.82 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
+++.++++++.. ++|++...+-.+.+.+.++++.|++.++.
T Consensus 163 ~~~~~~~~~~~~---~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 163 DFQFLKDVLQSV---DAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp HHHHHHHHHHHC---CSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHhhC---CCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 456778887642 68998777766899999999999987643
No 161
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=73.48 E-value=30 Score=26.84 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=60.3
Q ss_pred CeEEEEeC----CHHHHHHHHHHHHhcCcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC------
Q 042079 21 PHVLAVDD----SIVDRKIVENLLKNSACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM------ 88 (153)
Q Consensus 21 ~~iLiidd----~~~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~------ 88 (153)
..++++|- .....+.++.+-+..+..+. .+.+.+++..+.. ..+|.|.+...-
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~---------------aGAD~I~vG~g~Gs~~~t 221 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE---------------NGADGIKVGIGPGSICTT 221 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH---------------TTCSEEEECC--------
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH---------------cCCCEEEEeCCCCcCccc
Confidence 44666642 22334445444444455444 5788888766552 358899884210
Q ss_pred -----CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 89 -----PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 89 -----~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+...+.++..+.+......+|+|.-.+-.+...+.+++..||+..
T Consensus 222 r~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V 272 (400)
T 3ffs_A 222 RIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSV 272 (400)
T ss_dssp -CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEE
T ss_pred ccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEE
Confidence 0123466667665432123689988777778899999999999875
No 162
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=72.99 E-value=15 Score=25.90 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=36.6
Q ss_pred EEEEeCCCCCCC---HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 81 LVITDYCMPGMT---GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 81 lii~D~~~~~~~---g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
+.+.|....... .++.++.+++. ..+|+++...-.+.+.+.+++..|++..+.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 345565433222 24556777653 378999888888889999999999987654
No 163
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=71.86 E-value=27 Score=25.57 Aligned_cols=95 Identities=8% Similarity=0.016 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-CCC-CHHHHHHHHHhccCCCCC
Q 042079 33 RKIVENLLKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-PGM-TGYELLKKIKESSVMKEV 109 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-~~~-~g~~~~~~lr~~~~~~~~ 109 (153)
...+....+..|..+ ..+++..|+...+ ...+|+|=+.-.. ... -.++...+|.+.-. ..+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~---------------~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip-~~~ 221 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERAL---------------KLSSRLLGVNNRNLRSFEVNLAVSERLAKMAP-SDR 221 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHT---------------TSCCSEEEEECBCTTTCCBCTHHHHHHHHHSC-TTS
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHH---------------hcCCCEEEECCCCCccCCCChHHHHHHHHhCC-CCC
Confidence 334444455678764 4688888876655 2457888766322 221 12445555554321 367
Q ss_pred cEEEEeCCCChhhHHHHHHhcCccccc-----CCCChhH
Q 042079 110 PVVVVSSENIPTRINECLEEGAQMFML-----KPLKPSD 143 (153)
Q Consensus 110 pii~~t~~~~~~~~~~a~~~ga~~~l~-----KP~~~~~ 143 (153)
|+|.-++-.+++++.++.+.|++.++. ++-++.+
T Consensus 222 ~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~ 260 (272)
T 3tsm_A 222 LLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAA 260 (272)
T ss_dssp EEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHH
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHH
Confidence 888888888999999999999999864 5555444
No 164
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=71.77 E-value=22 Score=25.17 Aligned_cols=55 Identities=18% Similarity=0.413 Sum_probs=36.8
Q ss_pred cccEEEEeCCCCCCCH-------HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPGMTG-------YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g-------~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..|.|++-...|+..| ++-++++|+.. .+.++ .+.+.-+.+...++.+.||+.++
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I-~VdGGI~~~t~~~~~~aGAd~~V 195 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDI-EVDGGVGPDTVHKCAEAGANMIV 195 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEE-EEESSCSTTTHHHHHHHTCCEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCE-EEeCCcCHHHHHHHHHcCCCEEE
Confidence 3688877655666544 44466777643 34454 46666678888899999998764
No 165
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=71.73 E-value=28 Score=25.78 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=49.4
Q ss_pred HHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC----C---CCHHHHHHHHHhccCCCCCcE
Q 042079 40 LKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP----G---MTGYELLKKIKESSVMKEVPV 111 (153)
Q Consensus 40 l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~----~---~~g~~~~~~lr~~~~~~~~pi 111 (153)
++..+..+. .+.+..++.... ...+|.++++-.-. + ...+++++.+++. .++|+
T Consensus 114 l~~~gi~vi~~v~t~~~a~~~~---------------~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPv 175 (328)
T 2gjl_A 114 FRRHGVKVIHKCTAVRHALKAE---------------RLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPI 175 (328)
T ss_dssp HHHTTCEEEEEESSHHHHHHHH---------------HTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCE
T ss_pred HHHcCCCEEeeCCCHHHHHHHH---------------HcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCE
Confidence 344454443 356666655443 13478888853211 1 2567788888763 36899
Q ss_pred EEEeCCCChhhHHHHHHhcCccc
Q 042079 112 VVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 112 i~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
|+-.+-.+.+.+.+++..|++.+
T Consensus 176 iaaGGI~~~~~v~~al~~GAdgV 198 (328)
T 2gjl_A 176 IASGGFADGRGLVAALALGADAI 198 (328)
T ss_dssp EEESSCCSHHHHHHHHHHTCSEE
T ss_pred EEECCCCCHHHHHHHHHcCCCEE
Confidence 87777667888889999999865
No 166
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=71.62 E-value=9.3 Score=28.72 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCeEEEEeCCHHHHHHHHHHH-HhcCcEEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCccc--EEEEe
Q 042079 10 SSSSSSSNPKPPHVLAVDDSIVDRKIVENLL-KNSACKVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVN--LVITD 85 (153)
Q Consensus 10 ~~~~~~~~~~~~~iLiidd~~~~~~~l~~~l-~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~d--lii~D 85 (153)
....+.+.++..+|.||.--..-...+..+. ...++++.. +....+..+.+.. .+. .-..
T Consensus 13 ~~~~~~~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~---------------~~g~~~~~~- 76 (357)
T 3ec7_A 13 GRENLYFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALD---------------KYAIEAKDY- 76 (357)
T ss_dssp ---------CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHH---------------HHTCCCEEE-
T ss_pred CccccccCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHH---------------HhCCCCeee-
Confidence 3344555566689999999887776666665 335676653 3322222222210 111 1111
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 86 YCMPGMTGYELLKKIKESSVMKEVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 86 ~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
.+--+ .+.. +.+=+|+++.+. ..+....|++.|..-|+-||+ +.++.++++.
T Consensus 77 -----~~~~~---ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~ 132 (357)
T 3ec7_A 77 -----NDYHD---LIND----KDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIE 132 (357)
T ss_dssp -----SSHHH---HHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred -----CCHHH---HhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHH
Confidence 12222 2222 133344444433 355667788999888999996 5566666554
No 167
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.18 E-value=15 Score=22.49 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=17.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEE
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVT 48 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~ 48 (153)
+|||+.++.......-.+++..||.+.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 577777777766666666666666554
No 168
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=70.84 E-value=16 Score=25.71 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~KP~~~~~l~~~~~~ 150 (153)
+++++++++.. ++|+|...+-.+.++..++++.|++.+ +..|+++.++.+.+..
T Consensus 185 ~~~i~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~ 244 (252)
T 1ka9_F 185 LRLTRMVAEAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAE 244 (252)
T ss_dssp HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 88999998743 689998887777888888898898775 3357888888776543
No 169
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=70.59 E-value=25 Score=25.13 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=58.9
Q ss_pred HHHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEE
Q 042079 36 VENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVV 114 (153)
Q Consensus 36 l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~ 114 (153)
+.+.+.+.+. -|....+.+++.+...... ...+++|=+. +...++.+.++.+++.. +. .++-.
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~-----------~gGi~~iEvt--~~t~~a~e~I~~l~~~~--~~-~~iGa 90 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLA-----------ENGLPAAEIT--FRSDAAVEAIRLLRQAQ--PE-MLIGA 90 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHH-----------HTTCCEEEEE--TTSTTHHHHHHHHHHHC--TT-CEEEE
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHH-----------HCCCCEEEEe--CCCCCHHHHHHHHHHhC--CC-CEEeE
Confidence 3444555564 4556677777766653221 2345655554 44556899999998754 33 34444
Q ss_pred eCCCChhhHHHHHHhcCcccccCCCChhHHHHH
Q 042079 115 SSENIPTRINECLEEGAQMFMLKPLKPSDVKKL 147 (153)
Q Consensus 115 t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~ 147 (153)
..-.+.+....+.+.|++ |+..|-...++.+.
T Consensus 91 GTVlt~~~a~~Ai~AGA~-fIvsP~~~~~vi~~ 122 (232)
T 4e38_A 91 GTILNGEQALAAKEAGAT-FVVSPGFNPNTVRA 122 (232)
T ss_dssp ECCCSHHHHHHHHHHTCS-EEECSSCCHHHHHH
T ss_pred CCcCCHHHHHHHHHcCCC-EEEeCCCCHHHHHH
Confidence 445578888899999997 55667555555443
No 170
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=70.16 E-value=14 Score=26.27 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC--CC----ChhHHHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK--PL----KPSDVKKL 147 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K--P~----~~~~l~~~ 147 (153)
++.++.+++. ..+|+++...-.+.+.+.++++.|++..+.- ++ +++.++++
T Consensus 63 ~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~~~~~~~~~~ 119 (266)
T 2w6r_A 63 TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHFREIDMRELKEY 119 (266)
T ss_dssp HHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC------CHHHHHH
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHhCCCCHHHHHHH
Confidence 7888888864 3789998777667788889999999886543 33 45566654
No 171
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=69.83 E-value=16 Score=27.09 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=47.0
Q ss_pred ccEEEE-eCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 79 VNLVIT-DYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 79 ~dlii~-D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.|.+++ |-+.--. +--+.+++.|+.. +..||.+-+. +.+...+|.+.|+|....--++++++++....+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~--~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLD--SNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHC--TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhC--CCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 345554 5443322 2246677777653 5678776553 557888999999999998999999999877653
No 172
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=68.94 E-value=36 Score=25.96 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=59.8
Q ss_pred CeEEEEeC----CHHHHHHHHHHHHhc-CcEE--EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC----
Q 042079 21 PHVLAVDD----SIVDRKIVENLLKNS-ACKV--TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP---- 89 (153)
Q Consensus 21 ~~iLiidd----~~~~~~~l~~~l~~~-~~~v--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~---- 89 (153)
..++++|- .+...+.++.+-+.. +..+ ..+.+.+++..+.. ...|.|.+.+.-.
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~---------------aGAD~I~vG~gpGs~~~ 185 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE---------------AGVSAVKVGIGPGSICT 185 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH---------------HTCSEEEECSSCSTTBC
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHH---------------cCCCEEEEecCCCCCCC
Confidence 44666642 333344444544443 4443 35778888766552 2478998843211
Q ss_pred -------CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 90 -------GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 90 -------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
....++.+..+.+......+|+|...+-.+...+.+++..||+...
T Consensus 186 tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~ 238 (366)
T 4fo4_A 186 TRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVM 238 (366)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred cccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 1234556666653211136899887777788899999999998753
No 173
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=68.73 E-value=6.7 Score=27.06 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=38.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
..++..+|-++......++.++..+.. +. ...+..+.+..+... .....||+|++|....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~----------~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK----------YDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT----------SCCCCCSEEEECSCGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh----------cCCCceEEEEEcCCcc
Confidence 568999999999998888888766642 33 445555444333100 0114799999997443
No 174
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=68.23 E-value=16 Score=24.89 Aligned_cols=71 Identities=7% Similarity=0.008 Sum_probs=44.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..+.. +. ...+..+.+..+... .....||+|++|... .+-..+
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~----------~~~~~fD~v~~~~~~--~~~~~~ 156 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA----------GQAWQYDLIYIDADK--ANTDLY 156 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT----------TCTTCEEEEEECSCG--GGHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc----------cCCCCccEEEECCCH--HHHHHH
Confidence 578999999999998888888776542 33 445555554433100 001579999988742 233445
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 157 l~~~~~ 162 (225)
T 3tr6_A 157 YEESLK 162 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 565543
No 175
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=68.17 E-value=31 Score=24.94 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh--cCcccccCCCChhHHHHHHhhhc
Q 042079 90 GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE--GAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 90 ~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~--ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
..-|..+++.+.. .+|+|... . ....+.... |..+++..| +.+++.+.+.+++
T Consensus 252 E~~~~~~~EAma~-----G~PvI~s~-~---~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 252 EPGATVVSEAAVS-----GTPVVGTG-N---GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp CCCCHHHHHHHHT-----TCCEEECC-T---TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred cCccHHHHHHHhc-----CCCEEEcC-C---CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 3346677777653 56876433 2 234556667 888999999 9999999888765
No 176
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=67.87 E-value=12 Score=25.61 Aligned_cols=64 Identities=8% Similarity=0.145 Sum_probs=39.8
Q ss_pred cccEEEEeCCCC----CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-----ccCCCChhHH
Q 042079 78 KVNLVITDYCMP----GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-----MLKPLKPSDV 144 (153)
Q Consensus 78 ~~dlii~D~~~~----~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-----l~KP~~~~~l 144 (153)
..|.|.++.... ...+++.++++++.. +++|+++-.+- +.+...++.+.|++.+ +.+.-++.+.
T Consensus 127 g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~--~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~ 199 (211)
T 3f4w_A 127 GADMLAVHTGTDQQAAGRKPIDDLITMLKVR--RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGE 199 (211)
T ss_dssp TCCEEEEECCHHHHHTTCCSHHHHHHHHHHC--SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHH
T ss_pred CCCEEEEcCCCcccccCCCCHHHHHHHHHHc--CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 367777663211 113577888888743 36787755544 4778888999999876 3454455443
No 177
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=67.75 E-value=18 Score=27.23 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=41.1
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+.++..|+.. +..+|.+.+. +.+...+|++.|++....--+++++++++...+
T Consensus 219 ~~Av~~ar~~~--p~~kIeVEVd--tldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 219 RQAISTAKQLN--PGKPVEVETE--TLAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp HHHHHHHHHHS--TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCeEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45667777654 4567877664 457778899999999988899999999877653
No 178
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=66.55 E-value=14 Score=24.97 Aligned_cols=65 Identities=11% Similarity=0.239 Sum_probs=42.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..+. .+. ...+..+.+... .. ||+|++|.. ..+-..+
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---------------~~-fD~v~~~~~--~~~~~~~ 142 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ---------------RD-IDILFMDCD--VFNGADV 142 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC---------------CS-EEEEEEETT--TSCHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC---------------CC-CCEEEEcCC--hhhhHHH
Confidence 56899999999988888887776554 233 344444433222 24 999999954 3345667
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 143 l~~~~~ 148 (210)
T 3c3p_A 143 LERMNR 148 (210)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 777654
No 179
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=66.46 E-value=16 Score=24.99 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=43.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..+. .+. ...+..+.+..+... .....||+|++|.. ...-..+
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~----------~~~~~~D~v~~d~~--~~~~~~~ 161 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA----------GEAGTFDVAVVDAD--KENCSAY 161 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT----------TCTTCEEEEEECSC--STTHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc----------CCCCCccEEEECCC--HHHHHHH
Confidence 46899999999988888888876653 233 345555544433100 00146999999864 3333455
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 162 l~~~~~ 167 (229)
T 2avd_A 162 YERCLQ 167 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 180
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=66.35 E-value=22 Score=22.52 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=31.9
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..|++++-..... ....++..+++.. +.+++|..+. +........+.|++..+
T Consensus 71 ~ad~vi~~~~~~~-~n~~~~~~a~~~~--~~~~iiar~~--~~~~~~~l~~~G~d~vi 123 (140)
T 3fwz_A 71 CAKWLILTIPNGY-EAGEIVASARAKN--PDIEIIARAH--YDDEVAYITERGANQVV 123 (140)
T ss_dssp GCSEEEECCSCHH-HHHHHHHHHHHHC--SSSEEEEEES--SHHHHHHHHHTTCSEEE
T ss_pred cCCEEEEECCChH-HHHHHHHHHHHHC--CCCeEEEEEC--CHHHHHHHHHCCCCEEE
Confidence 5788876543222 2233455566543 4667776664 55666677789998665
No 181
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=66.25 E-value=20 Score=26.49 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=43.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
.+++.+|..- .....++++++++.. ...+|+++=.+-.+.+.+.++++.||+..+.-
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 5799999765 444578999998753 11678887777778999999999999877554
No 182
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=66.18 E-value=26 Score=23.30 Aligned_cols=85 Identities=25% Similarity=0.315 Sum_probs=44.6
Q ss_pred CCCeEEEEeCCHHHH--HHHHHHHHhcCcEEEE-e---cC-HHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAVDDSIVDR--KIVENLLKNSACKVTT-A---EN-GMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~--~~l~~~l~~~~~~v~~-~---~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
..++|+++.|+.... ..+...|.... .+.. . .+ ....++.+.... ...+||+|++.+...+.
T Consensus 19 ~~prVl~iGDSit~G~~~~l~~~l~~~~-~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~pd~Vvi~~G~ND~ 87 (200)
T 4h08_A 19 DLPHVLLIGNSITRGYYGKVEAALKEKA-YVGRLSNSKSVGDPALIEELAVVL----------KNTKFDVIHFNNGLHGF 87 (200)
T ss_dssp SSCEEEEEESHHHHHHHHHHHHHTTTTC-EEEEEEESCCTTCHHHHHHHHHHH----------HHSCCSEEEECCCSSCT
T ss_pred CCCeEEEEchhHHhhhHHHHHHHhccCC-eEEEEeccCCccHHHHHHHHHHHH----------hcCCCCeEEEEeeeCCC
Confidence 456899999986542 33445554322 2321 1 11 122223221100 13568999997766653
Q ss_pred C--H-------HHHHHHHHhccCCCCCcEEEEeC
Q 042079 92 T--G-------YELLKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 92 ~--g-------~~~~~~lr~~~~~~~~pii~~t~ 116 (153)
. . -.+++.+++.. +..+||+++.
T Consensus 88 ~~~~~~~~~~l~~ii~~l~~~~--p~~~ii~~~~ 119 (200)
T 4h08_A 88 DYTEEEYDKSFPKLIKIIRKYA--PKAKLIWANT 119 (200)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHC--TTCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHhhhC--CCccEEEecc
Confidence 2 1 23556666654 5677777654
No 183
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=66.12 E-value=28 Score=24.09 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=43.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE---EEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK---VTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~---v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
..++..+|-++......+..++..|+. +.. ..+..+.+..+ ....||+|++|...+ +-.+
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~--------------~~~~fD~V~~d~~~~--~~~~ 144 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL--------------ANDSYQLVFGQVSPM--DLKA 144 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS--------------CTTCEEEEEECCCTT--THHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh--------------cCCCcCeEEEcCcHH--HHHH
Confidence 468999999999999998888876653 443 33444433222 135799999997543 3344
Q ss_pred HHHHHHh
Q 042079 96 LLKKIKE 102 (153)
Q Consensus 96 ~~~~lr~ 102 (153)
+++.+.+
T Consensus 145 ~l~~~~~ 151 (221)
T 3dr5_A 145 LVDAAWP 151 (221)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5665543
No 184
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=66.02 E-value=41 Score=25.53 Aligned_cols=87 Identities=10% Similarity=0.123 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-----------CCCHHHHHHH
Q 042079 33 RKIVENLLKNSACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-----------GMTGYELLKK 99 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-----------~~~g~~~~~~ 99 (153)
.+.++.+-+..+..+. .+.+.+++..+.. ...|.|.+..... ....++.+..
T Consensus 134 ~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~---------------aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~ 198 (361)
T 3khj_A 134 IRTLKEIKSKMNIDVIVGNVVTEEATKELIE---------------NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEK 198 (361)
T ss_dssp HHHHHHHHHHCCCEEEEEEECSHHHHHHHHH---------------TTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEccCCCHHHHHHHHH---------------cCcCEEEEecCCCcCCCcccccCCCCCcHHHHHH
Confidence 3444444444454443 5777777766552 3578888742111 1234555555
Q ss_pred HHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 100 IKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 100 lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.+......+|||.-.+-.+...+.+++..||+..
T Consensus 199 v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V 233 (361)
T 3khj_A 199 CSSVASKFGIPIIADGGIRYSGDIGKALAVGASSV 233 (361)
T ss_dssp HHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEE
Confidence 54311112589987777678889999999999875
No 185
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=65.99 E-value=28 Score=23.63 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..+...+. .+ ....+..+.+..+.. .....||+|++|...+ .-..+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----------~~~~~fD~v~~d~~~~--~~~~~ 149 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIEN-----------EKYEPFDFIFIDADKQ--NNPAY 149 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH-----------TTCCCCSEEEECSCGG--GHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-----------cCCCCcCEEEEcCCcH--HHHHH
Confidence 56899999999998888888876664 13 345565555443310 0114699999996532 33466
Q ss_pred HHHHHhccCCCCCcEEEEe
Q 042079 97 LKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t 115 (153)
++.+.+.- .+.. ++++.
T Consensus 150 l~~~~~~L-~pgG-~lv~~ 166 (223)
T 3duw_A 150 FEWALKLS-RPGT-VIIGD 166 (223)
T ss_dssp HHHHHHTC-CTTC-EEEEE
T ss_pred HHHHHHhc-CCCc-EEEEe
Confidence 66665432 2343 44443
No 186
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=65.12 E-value=26 Score=24.58 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccCCCChhHHHHHHh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLKPLKPSDVKKLTG 149 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~KP~~~~~l~~~~~ 149 (153)
++.++++++. .++|+|+-.+-.+.+.+.++++.|++.+ +..|+++.+..+.+.
T Consensus 184 ~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~l~ 242 (253)
T 1thf_D 184 TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLK 242 (253)
T ss_dssp HHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7888998864 3789998877777788899999998764 334667777766554
No 187
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=64.79 E-value=21 Score=28.40 Aligned_cols=56 Identities=7% Similarity=0.141 Sum_probs=42.1
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|+|.+|...+.. ...++++++++.. +.+|+++ ..-.+.+....+.+.|++.+..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHC--CCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 58999999887654 3468888998754 4678875 3334677788899999998764
No 188
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=64.60 E-value=34 Score=24.00 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.++.++++++.. ++|+++-.+-...+.+.+++..|++.++.
T Consensus 179 ~~~~i~~l~~~~---~~pi~~~GGI~~~e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 179 AYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp HHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhc---CCCEEEEeecCCHHHHHHHHHcCCCEEEE
Confidence 356778887643 68887666666658888888999988754
No 189
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=64.41 E-value=32 Score=23.66 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=35.8
Q ss_pred cccEEEEeCCCC--------CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCMP--------GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~~--------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+|.+++....+ ...+++.++++++.. +++|+++..+-. .+.+.++++.|++.+
T Consensus 136 g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 136 GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 478888632222 123688888888643 238988766654 777778888898765
No 190
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=64.00 E-value=13 Score=27.21 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred CCCeEEEEeCC-----HHHHHHHHHHHHhcC-cEEEEecCHHHH--HHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 19 KPPHVLAVDDS-----IVDRKIVENLLKNSA-CKVTTAENGMRA--LEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 19 ~~~~iLiidd~-----~~~~~~l~~~l~~~~-~~v~~~~~~~~a--~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
+..++||+... +.....+..+|++.| ++|....+.... ...+. +.-..+|+||++.....
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~------------~~L~~~D~vV~~~~~~~ 70 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV------------LDFSPYQLVVLDYNGDS 70 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC------------CCCTTCSEEEECCCSSC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh------------hhhhcCCEEEEeCCCCc
Confidence 45678888772 455678888898887 999888763100 00110 01246999999876544
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEEeC
Q 042079 91 MTGYELLKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 91 ~~g~~~~~~lr~~~~~~~~pii~~t~ 116 (153)
.+. +..+.|.+.- .....+|.+=+
T Consensus 71 l~~-~~~~~l~~yV-~~Ggglv~~H~ 94 (281)
T 4e5v_A 71 WPE-ETNRRFLEYV-QNGGGVVIYHA 94 (281)
T ss_dssp CCH-HHHHHHHHHH-HTTCEEEEEGG
T ss_pred CCH-HHHHHHHHHH-HcCCCEEEEec
Confidence 332 2222332211 12457776643
No 191
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=63.71 E-value=20 Score=24.93 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=43.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..+. .+. ...+..+.+..+... .....||+|++|... .+-..+
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~----------~~~~~fD~V~~d~~~--~~~~~~ 164 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQG----------KPLPEFDLIFIDADK--RNYPRY 164 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTS----------SSCCCEEEEEECSCG--GGHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc----------CCCCCcCEEEECCCH--HHHHHH
Confidence 46899999999998888888776554 233 445555544433100 001569999999642 233455
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 165 l~~~~~ 170 (232)
T 3cbg_A 165 YEIGLN 170 (232)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 192
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=63.50 E-value=13 Score=26.53 Aligned_cols=53 Identities=11% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccCCCChhHHHHHH
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLKPLKPSDVKKLT 148 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~KP~~~~~l~~~~ 148 (153)
.+++++++++. .++|+|+..+-.+.+.+.++++.|++.+ +..|+...++.+.+
T Consensus 188 ~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 246 (266)
T 2w6r_A 188 DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEYL 246 (266)
T ss_dssp CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-------------
T ss_pred CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHHH
Confidence 37888888864 3789998888778888999998898765 33466666665543
No 193
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=63.15 E-value=19 Score=27.24 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=33.8
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA 131 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga 131 (153)
+..|+|++--.||- +++++++|+.. +.+|+..+--......+..|.+.|.
T Consensus 255 EGAD~vMVKPal~Y---LDIi~~vk~~~--p~~P~aaYqVSGEYAMikaAa~~Gw 304 (342)
T 1h7n_A 255 EGADGIIVKPSTFY---LDIMRDASEIC--KDLPICAYHVSGEYAMLHAAAEKGV 304 (342)
T ss_dssp TTCSEEEEESSGGG---HHHHHHHHHHT--TTSCEEEEECHHHHHHHHHHHHTTS
T ss_pred hCCCeEEEecCccH---HHHHHHHHHhc--cCCCeEEEEcCcHHHHHHHHHHcCC
Confidence 45799999865555 88899998764 5899988864444444444444443
No 194
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=63.13 E-value=44 Score=24.82 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-C----CCCHHHHHHHHHhccCCCCCcEEE
Q 042079 40 LKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-P----GMTGYELLKKIKESSVMKEVPVVV 113 (153)
Q Consensus 40 l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-~----~~~g~~~~~~lr~~~~~~~~pii~ 113 (153)
++..+..+. .+.+..++..... ..+|.|+++-.- . ....+++++.+++.. ++|+|+
T Consensus 120 l~~~g~~v~~~v~s~~~a~~a~~---------------~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~---~iPvia 181 (326)
T 3bo9_A 120 LKENGTKVIPVVASDSLARMVER---------------AGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV---NIPVIA 181 (326)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH---------------TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEE
T ss_pred HHHcCCcEEEEcCCHHHHHHHHH---------------cCCCEEEEECCCCCccCCCccHHHHHHHHHHHc---CCCEEE
Confidence 344454443 3566666554431 347888885421 1 235678888887642 689987
Q ss_pred EeCCCChhhHHHHHHhcCccc
Q 042079 114 VSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 114 ~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..+-.+.+.+.+++..|++.+
T Consensus 182 aGGI~~~~dv~~al~~GA~gV 202 (326)
T 3bo9_A 182 AGGIADGRGMAAAFALGAEAV 202 (326)
T ss_dssp ESSCCSHHHHHHHHHHTCSEE
T ss_pred ECCCCCHHHHHHHHHhCCCEE
Confidence 777777889999999999875
No 195
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=62.93 E-value=29 Score=25.63 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=50.8
Q ss_pred EEEEeCCHHHHHHHHHHHH---hcC--c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 23 VLAVDDSIVDRKIVENLLK---NSA--C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~---~~~--~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+||-|+|......+...++ +.. . ....+.+.+++.+.+. ..+|+|++|-..| +-
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~---------------aGaD~I~LDn~~~-----~~ 231 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIA---------------AKADIVMLDNFSG-----ED 231 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHH---------------TTCSEEEEESCCH-----HH
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHH---------------cCCCEEEEcCCCH-----HH
Confidence 7777776544433333222 111 1 2347888888887773 3589999996333 22
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+++..+... .++ .+..++.-+.+.+.+..+.|+|.+
T Consensus 232 l~~av~~~~-~~v-~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 232 IDIAVSIAR-GKV-ALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp HHHHHHHHT-TTC-EEEEESSCCTTTHHHHHTTTCSEE
T ss_pred HHHHHHhhc-CCc-eEEEECCCCHHHHHHHHHcCCCEE
Confidence 333222111 244 455777778888888888898754
No 196
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=62.81 E-value=45 Score=24.87 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=43.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-----C
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS-ACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-----T 92 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~-~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-----~ 92 (153)
..++..||-++...+..++.+... +-.+ ....++.+.+... ...+||+||+|...+.. .
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~--------------~~~~fDvIi~D~~~~~~~~~~L~ 178 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF--------------TPASRDVIIRDVFAGAITPQNFT 178 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC--------------CTTCEEEEEECCSTTSCCCGGGS
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc--------------cCCCCCEEEECCCCccccchhhh
Confidence 457889999998888888776532 1122 3455655544322 13579999999765532 1
Q ss_pred HHHHHHHHHh
Q 042079 93 GYELLKKIKE 102 (153)
Q Consensus 93 g~~~~~~lr~ 102 (153)
..++++.+++
T Consensus 179 t~efl~~~~r 188 (317)
T 3gjy_A 179 TVEFFEHCHR 188 (317)
T ss_dssp BHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 2577777765
No 197
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=62.80 E-value=57 Score=26.00 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=37.2
Q ss_pred cccEEEEeCCCCC-----------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPG-----------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~-----------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+|.|.++..-.. ...+..+..+.+......+|+|+-.+-.+..++.+|+..||+...
T Consensus 318 Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~ 386 (511)
T 3usb_A 318 GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVM 386 (511)
T ss_dssp TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhe
Confidence 4788877442211 233455555432211135899987777789999999999998864
No 198
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=62.53 E-value=18 Score=27.24 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=41.5
Q ss_pred cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc
Q 042079 51 ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG 130 (153)
Q Consensus 51 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g 130 (153)
.+..||+....... .+..|+|++--.||- +++++++|+.. +.+|+..+--......+..|.+.|
T Consensus 229 aN~~EAlre~~~Di-----------~EGAD~vMVKPal~Y---LDIi~~vk~~~--p~~P~aaYqVSGEYAMikaAa~~G 292 (330)
T 1pv8_A 229 GARGLALRAVDRDV-----------REGADMLMVKPGMPY---LDIVREVKDKH--PDLPLAVYHVSGEFAMLWHGAQAG 292 (330)
T ss_dssp TCHHHHHHHHHHHH-----------HTTCSBEEEESCGGG---HHHHHHHHHHS--TTSCEEEEECHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhhH-----------HhCCceEEEecCccH---HHHHHHHHHhc--CCCCeEEEEcCcHHHHHHHHHHcC
Confidence 35567776653321 245799999865555 88899999764 589998886444444444444444
Q ss_pred C
Q 042079 131 A 131 (153)
Q Consensus 131 a 131 (153)
.
T Consensus 293 w 293 (330)
T 1pv8_A 293 A 293 (330)
T ss_dssp S
T ss_pred C
Confidence 3
No 199
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=62.46 E-value=8.3 Score=28.58 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCC--CChhhHHHHHHhcCcccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSE--NIPTRINECLEEGAQMFM 135 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~--~~~~~~~~a~~~ga~~~l 135 (153)
.+++++++++. .++|+|+++.. .+++...++++.|+++.+
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVm 227 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVF 227 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEE
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEE
Confidence 47888999875 36899877443 368899999999999874
No 200
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=61.75 E-value=49 Score=24.93 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=50.7
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCC--CCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVM--KEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~--~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~~~l~~~~~~~ 151 (153)
..+|.|++|+.-...+--.+.+.++..... ...++++=+...+...+..+++.|++.+ +.|=-+.++++++...+
T Consensus 62 ~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~ 139 (339)
T 1izc_A 62 TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEM 139 (339)
T ss_dssp TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 469999999977665554555555432110 1256777777778888899999999874 55556778887765543
No 201
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=61.68 E-value=22 Score=26.55 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=54.0
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcC-c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSA-C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~-~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.|||-|+|......+...++ ..+ . ....+++.+|+.+.+. ..+|+|++|-..| ..--+
T Consensus 180 ~vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~---------------aGaDiImLDn~s~-~~l~~ 243 (300)
T 3l0g_A 180 GVLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLS---------------NNVDMILLDNMSI-SEIKK 243 (300)
T ss_dssp CEEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHH---------------TTCSEEEEESCCH-HHHHH
T ss_pred eEEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHH---------------cCCCEEEECCCCH-HHHHH
Confidence 37777777655433333322 222 1 2446888898888773 3589999996332 11122
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.++.++ .+ ..+..++.-+.+.+.+..+.|+|-+
T Consensus 244 av~~~~-----~~-v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 244 AVDIVN-----GK-SVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp HHHHHT-----TS-SEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred HHHhhc-----Cc-eEEEEECCCCHHHHHHHHHcCCCEE
Confidence 233332 23 3556777778888888888888754
No 202
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=61.56 E-value=24 Score=25.89 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=55.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
++|.|+-........+..+|++.|+++.......+ .+ ..+|+||+= +.|| .+++..
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~---~~----------------~~~DlvIvl----GGDG-T~L~aa 85 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSE---EL----------------ENFDFIVSV----GGDG-TILRIL 85 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCG---GG----------------GGSSEEEEE----ECHH-HHHHHH
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccc---cc----------------CCCCEEEEE----CCCH-HHHHHH
Confidence 56777755322266788888889998876553222 11 246887741 3345 456666
Q ss_pred HhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 101 KESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.... . +|++-+.. |-.+||. +++++++.+.+.++
T Consensus 86 ~~~~~-~-~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l 120 (278)
T 1z0s_A 86 QKLKR-C-PPIFGINT-------------GRVGLLT-HASPENFEVELKKA 120 (278)
T ss_dssp TTCSS-C-CCEEEEEC-------------SSSCTTC-CBBTTBCHHHHHHH
T ss_pred HHhCC-C-CcEEEECC-------------CCCcccc-ccCHHHHHHHHHHH
Confidence 65332 2 89988874 4556765 46666666666554
No 203
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=61.10 E-value=35 Score=24.02 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=22.3
Q ss_pred cccEEEEeC-CCCCCCHHHHHHHHHhccCCCCCcEEEEe
Q 042079 78 KVNLVITDY-CMPGMTGYELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 78 ~~dlii~D~-~~~~~~g~~~~~~lr~~~~~~~~pii~~t 115 (153)
++|+|++|- +.-+.+-.++++.+... .+++|+..
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~----~~~Vi~~G 135 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANR----GYRVIVAG 135 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHT----TCEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhC----CCEEEEEe
Confidence 589999984 33344566777777642 56776544
No 204
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=60.89 E-value=19 Score=25.95 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=41.4
Q ss_pred ccEEEEeC---CC-CCC-CHHHHHHHHHhccCCCCCcEEE-EeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 79 VNLVITDY---CM-PGM-TGYELLKKIKESSVMKEVPVVV-VSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 79 ~dlii~D~---~~-~~~-~g~~~~~~lr~~~~~~~~pii~-~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.|.+=+|+ .. |.. -|..+++.||+.. ++.|+-+ +.-.+.......+.+.|++.+..-.-....+.+.+..
T Consensus 54 ~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~--p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ 129 (246)
T 3inp_A 54 ADNIHFDVMDNHYVPNLTFGPMVLKALRDYG--ITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQL 129 (246)
T ss_dssp CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHT--CCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHH
T ss_pred CCEEEEEecCCCcCcchhcCHHHHHHHHHhC--CCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHH
Confidence 45554444 32 333 4889999999754 3566654 3333345567778899998765554433444444443
No 205
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=60.62 E-value=20 Score=26.68 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=40.1
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+.++.+|+.. +..++.+-.. +.+...+|.+.|++....--++++++++.+..+
T Consensus 197 ~~Av~~~r~~~--p~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 197 GEALDAAFALN--AEVPVQIEVE--TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp HHHHHHHHHHC----CCCEEEES--SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45667777654 4567776664 456788899999999999999999999877643
No 206
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=60.34 E-value=50 Score=24.52 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=39.5
Q ss_pred cccEEEEeCCCC-----CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCMP-----GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~~-----~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+|.|+++-.-. ....+++++.+++.. ++|+|+..+-.+.+.+.+++..|++..
T Consensus 130 GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~---~iPViaaGGI~~~~~~~~al~~GAdgV 188 (332)
T 2z6i_A 130 GADAVIAEGMEAGGHIGKLTTMTLVRQVATAI---SIPVIAAGGIADGEGAAAGFMLGAEAV 188 (332)
T ss_dssp TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCCCCCCCccHHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 478888853211 234678888888643 689988777777889999999999764
No 207
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=60.16 E-value=33 Score=24.16 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=38.6
Q ss_pred cccEE-EEeCCCC---CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLV-ITDYCMP---GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dli-i~D~~~~---~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+|.| +.|..-. ....+++++++++.. .+|+++-..-.+.+.+.++++.|++..+
T Consensus 48 G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~---~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ 106 (247)
T 3tdn_A 48 GAGEILLTSIDRDGTKSGYDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLRGADKVS 106 (247)
T ss_dssp TCSEEEEEETTTTTCSSCCCHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEEC
T ss_pred CCCEEEEEecCcccCCCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 35544 4565322 223478888888743 7899988777788889999999988764
No 208
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=60.02 E-value=25 Score=20.90 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=30.6
Q ss_pred CCcEEEEeCCCChh----hHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 108 EVPVVVVSSENIPT----RINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 108 ~~pii~~t~~~~~~----~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.-|++++....+.. ...+|.+.|+.--+.|..+++++-+.++..
T Consensus 51 gkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvref 98 (112)
T 2lnd_A 51 GKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREF 98 (112)
T ss_dssp CSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHH
T ss_pred CCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHH
Confidence 45777777665543 345677888876678899999987665543
No 209
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=59.86 E-value=42 Score=23.54 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=40.6
Q ss_pred CCCeEEEEeCCH------HHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 19 KPPHVLAVDDSI------VDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 19 ~~~~iLiidd~~------~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
...+|++|+-.. .....+.+.|++.|+++.......+..+.+. ..|.|++ |+.+
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~----------------~ad~I~l----pGG~ 89 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE----------------KAEIIIV----GGGN 89 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH----------------HCSEEEE----CCSC
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh----------------cCCEEEE----CCCc
Confidence 347899998552 5667778889999998887742211222221 2577874 5666
Q ss_pred HHHHHHHHHh
Q 042079 93 GYELLKKIKE 102 (153)
Q Consensus 93 g~~~~~~lr~ 102 (153)
...+.+.|++
T Consensus 90 ~~~~~~~l~~ 99 (229)
T 1fy2_A 90 TFQLLKESRE 99 (229)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6776666654
No 210
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=59.65 E-value=30 Score=24.14 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=45.3
Q ss_pred cccEEE-EeCCCCC---CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh---cCccc------ccCCCChhHH
Q 042079 78 KVNLVI-TDYCMPG---MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE---GAQMF------MLKPLKPSDV 144 (153)
Q Consensus 78 ~~dlii-~D~~~~~---~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~---ga~~~------l~KP~~~~~l 144 (153)
.++.|+ .+....+ .-.++.++++++. .++|+|.-.+-.+.+...++++. |++.+ +..|..+.++
T Consensus 162 G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~ 238 (244)
T 2y88_A 162 GCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQA 238 (244)
T ss_dssp TCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHH
T ss_pred CCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHH
Confidence 356554 5543322 1257788888863 37899988777777888899988 88754 4567777776
Q ss_pred HHH
Q 042079 145 KKL 147 (153)
Q Consensus 145 ~~~ 147 (153)
.+.
T Consensus 239 ~~~ 241 (244)
T 2y88_A 239 LAA 241 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 211
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=59.23 E-value=20 Score=25.17 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh-----c-Cccc------ccCCCChhHHHHHH
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE-----G-AQMF------MLKPLKPSDVKKLT 148 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~-----g-a~~~------l~KP~~~~~l~~~~ 148 (153)
.+++++++++.. ++|+|...+-.+.++..++++. | ++.+ +..++++.++.+.+
T Consensus 176 ~~~~i~~l~~~~---~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~~ 240 (241)
T 1qo2_A 176 DFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRYA 240 (241)
T ss_dssp CHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred CHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHHh
Confidence 388899988753 6899988877788999999888 8 8764 55688888877653
No 212
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=58.97 E-value=36 Score=25.05 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=39.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
...++..|+... +..+|.+-+ .+.+...+|.+.|+|-++.-+++++++++....+
T Consensus 180 ~~av~~ar~~~~-~~~~I~VEV--~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l 234 (285)
T 1o4u_A 180 ERAVQEVRKIIP-FTTKIEVEV--ENLEDALRAVEAGADIVMLDNLSPEEVKDISRRI 234 (285)
T ss_dssp HHHHHHHHTTSC-TTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCceEEEEe--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 456677776442 235666544 3578888999999998889999999998876553
No 213
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=58.64 E-value=42 Score=23.17 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=53.0
Q ss_pred EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHH
Q 042079 49 TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINEC 126 (153)
Q Consensus 49 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a 126 (153)
.+.+..++..... ...|++-+ .|. .- |.+.++.++... +++|++.+.+- +.+.+.+.
T Consensus 110 G~~t~~e~~~A~~---------------~Gad~v~~---fpa~~~gG~~~lk~l~~~~--~~ipvvaiGGI-~~~n~~~~ 168 (207)
T 2yw3_A 110 GVLTPTEVERALA---------------LGLSALKF---FPAEPFQGVRVLRAYAEVF--PEVRFLPTGGI-KEEHLPHY 168 (207)
T ss_dssp EECSHHHHHHHHH---------------TTCCEEEE---TTTTTTTHHHHHHHHHHHC--TTCEEEEBSSC-CGGGHHHH
T ss_pred cCCCHHHHHHHHH---------------CCCCEEEE---ecCccccCHHHHHHHHhhC--CCCcEEEeCCC-CHHHHHHH
Confidence 4778888776552 34788876 343 33 889999998643 57898866554 57888899
Q ss_pred HHhcCccc-----ccCCCChhHHHHHHhh
Q 042079 127 LEEGAQMF-----MLKPLKPSDVKKLTGH 150 (153)
Q Consensus 127 ~~~ga~~~-----l~KP~~~~~l~~~~~~ 150 (153)
+..|++.+ +.+ -++.++.+...+
T Consensus 169 l~aGa~~vavgSai~~-~d~~~i~~~a~~ 196 (207)
T 2yw3_A 169 AALPNLLAVGGSWLLQ-GNLEAVRAKVRA 196 (207)
T ss_dssp HTCSSBSCEEESGGGS-SCHHHHHHHHHH
T ss_pred HhCCCcEEEEehhhhC-CCHHHHHHHHHH
Confidence 99998664 344 344555554444
No 214
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=58.59 E-value=33 Score=25.17 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=39.3
Q ss_pred ccEEEEeCCC------CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCM------PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~------~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++=... ...-|..+++.+.. .+|+|. +.... ..+....| .+++..|-+.+++.+.+.+++
T Consensus 273 ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~-----G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~ 342 (394)
T 3okp_A 273 ADIFAMPARTRGGGLDVEGLGIVYLEAQAC-----GVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELL 342 (394)
T ss_dssp CSEEEECCCCBGGGTBCCSSCHHHHHHHHT-----TCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEecCccccccccccccCcHHHHHHHc-----CCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHH
Confidence 4666653322 13345667776653 568775 33222 22334566 889999999999998887764
No 215
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=58.56 E-value=13 Score=26.66 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=33.6
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChh---hHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPT---RINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~---~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
++++++.+|+. .++|+++++.. +.. ....+.+.|++.++.-....+++.+++.
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~ 137 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWS 137 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHH
Confidence 45677788764 36888876522 211 1234889999988876666556655544
No 216
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=58.39 E-value=35 Score=25.61 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=41.0
Q ss_pred CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC
Q 042079 52 NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA 131 (153)
Q Consensus 52 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga 131 (153)
+..||+....... .+..|+|++--.||- +++++++++.. .+|+..+--......+..|.+.|.
T Consensus 224 N~~EAlre~~~Di-----------~EGAD~vMVKPal~Y---LDIi~~vk~~~---~~P~aaYqVSGEYAMikaAa~~Gw 286 (323)
T 1l6s_A 224 NRREAIRESLLDE-----------AQGADCLMVKPAGAY---LDIVRELRERT---ELPIGAYQVSGEYAMIKFAALAGA 286 (323)
T ss_dssp CHHHHHHHHHHHH-----------HTTCSBEEEESCTTC---HHHHHHHHTTC---SSCEEEEECHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHhhH-----------HhCCceEEEecCcch---hHHHHHHHHhc---CCCeEEEEcCcHHHHHHHHHHcCC
Confidence 5566666553221 245799999977766 78889998753 789988865444444455555543
No 217
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=58.20 E-value=39 Score=22.72 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=25.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
++|+|||........+.+.|++.|+.+......
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC
Confidence 479999976667777788888889887776654
No 218
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=58.06 E-value=43 Score=23.13 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=45.8
Q ss_pred ccEEEE-eCCCCC---CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc------cCCCChhHHHHHH
Q 042079 79 VNLVIT-DYCMPG---MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM------LKPLKPSDVKKLT 148 (153)
Q Consensus 79 ~dlii~-D~~~~~---~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l------~KP~~~~~l~~~~ 148 (153)
+|.|++ .....+ .-.++.++++++. .++|+++-.+-.+.+.+.++++.|++.++ ..+.+..++.+.+
T Consensus 168 ~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l 244 (253)
T 1h5y_A 168 AGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYL 244 (253)
T ss_dssp CSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHH
Confidence 566654 433211 1246788888864 26899877776667888888999998753 3566777777665
Q ss_pred hh
Q 042079 149 GH 150 (153)
Q Consensus 149 ~~ 150 (153)
..
T Consensus 245 ~~ 246 (253)
T 1h5y_A 245 KE 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 219
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=58.01 E-value=58 Score=24.54 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+++++.+++. .++|+|+..+-.+.+.+.+++..|++.+
T Consensus 196 ~~~~l~~i~~~---~~iPViaaGGI~~~~~~~~~l~~GAd~V 234 (369)
T 3bw2_A 196 LLSLLAQVREA---VDIPVVAAGGIMRGGQIAAVLAAGADAA 234 (369)
T ss_dssp HHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHh---cCceEEEECCCCCHHHHHHHHHcCCCEE
Confidence 48888888764 2689987777668899999999998764
No 220
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=57.99 E-value=38 Score=24.36 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=43.8
Q ss_pred cEEEEeCCCCCC---CHHHHHHHHHhccCCC---CCcEEEEeCCCChhhHHHHHHh--cCccc--------ccCC-CChh
Q 042079 80 NLVITDYCMPGM---TGYELLKKIKESSVMK---EVPVVVVSSENIPTRINECLEE--GAQMF--------MLKP-LKPS 142 (153)
Q Consensus 80 dlii~D~~~~~~---~g~~~~~~lr~~~~~~---~~pii~~t~~~~~~~~~~a~~~--ga~~~--------l~KP-~~~~ 142 (153)
.+++.|..-.++ .-+++++++++.. + .+|+|.-..-.+.+++.++++. |+++. ...| +++.
T Consensus 173 ~il~t~i~~dG~~~G~d~eli~~l~~~~--~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~ 250 (260)
T 2agk_A 173 EFLIHAADVEGLCGGIDELLVSKLFEWT--KDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFE 250 (260)
T ss_dssp EEEEEC-------CCCCHHHHHHHHHHH--TTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHH
T ss_pred EEEEEeeccccCcCCCCHHHHHHHHHhh--cccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHH
Confidence 345556543221 2478889888642 2 6899877777788999999887 77652 4455 8888
Q ss_pred HHHHHHh
Q 042079 143 DVKKLTG 149 (153)
Q Consensus 143 ~l~~~~~ 149 (153)
++.+.++
T Consensus 251 ~~~~~~~ 257 (260)
T 2agk_A 251 DCCRWNE 257 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 221
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=57.74 E-value=12 Score=26.09 Aligned_cols=54 Identities=17% Similarity=0.379 Sum_probs=40.1
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
.+||++ ++ ||+.- .++++++++.. .+|+|+=..-.+.+...+|++.||+..-+.
T Consensus 126 ~~PD~i--Ei-LPGi~-p~iI~~i~~~~---~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 126 VQPDCI--EL-LPGII-PEQVQKMTQKL---HIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp HCCSEE--EE-ECTTC-HHHHHHHHHHH---CCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred cCCCEE--EE-CCchh-HHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 457877 22 46644 37899998753 789987666778999999999999876543
No 222
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=56.98 E-value=40 Score=24.50 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=43.1
Q ss_pred ccEEEEeCCCCCCCH-HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc--CCCChhHHHHHHhh
Q 042079 79 VNLVITDYCMPGMTG-YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML--KPLKPSDVKKLTGH 150 (153)
Q Consensus 79 ~dlii~D~~~~~~~g-~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~--KP~~~~~l~~~~~~ 150 (153)
.+.|=+-....-+.| ++.++.+|+. ..+|++.-----++..+.+|...||+..+. .-++.+++.+++..
T Consensus 86 A~~isvltd~~~f~Gs~~~l~~ir~~---v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~ 157 (272)
T 3qja_A 86 ARIVSVVTEQRRFQGSLDDLDAVRAS---VSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDR 157 (272)
T ss_dssp CSEEEEECCGGGHHHHHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHH
T ss_pred CCEEEEecChhhcCCCHHHHHHHHHh---CCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHH
Confidence 445433222222334 7788888874 367887543334555678899999999875 45666777665543
No 223
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=56.91 E-value=35 Score=23.33 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=38.0
Q ss_pred cccEEEEeCCCCCCCH-------HHHHHHHHhccC--CCCCcEEEEeCCCChhhHHHHHHhcCccc-----ccCCCChhH
Q 042079 78 KVNLVITDYCMPGMTG-------YELLKKIKESSV--MKEVPVVVVSSENIPTRINECLEEGAQMF-----MLKPLKPSD 143 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g-------~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~a~~~ga~~~-----l~KP~~~~~ 143 (153)
..|.++++...|+.+| ++-++.+|+... ..+.|+++ ++.-+.+...++.+.|++.+ +.+.-++.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v-~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV-DGGVDNKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE-ESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE-ECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 3688887665554333 244555554220 11466654 44445677778888899876 344445554
Q ss_pred HHH
Q 042079 144 VKK 146 (153)
Q Consensus 144 l~~ 146 (153)
..+
T Consensus 210 a~~ 212 (220)
T 2fli_A 210 QVQ 212 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 224
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=56.83 E-value=64 Score=24.67 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=38.4
Q ss_pred CcccEEEEeCCC-----------CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCM-----------PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~-----------~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..+|.|.+...- .+...++.+..+++.....++|||....-.+..++.+++..||+...
T Consensus 214 ~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~ 283 (404)
T 1eep_A 214 VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVM 283 (404)
T ss_dssp TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHh
Confidence 458888883210 01224555666654221236899887777788999999999998753
No 225
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=56.57 E-value=37 Score=21.85 Aligned_cols=78 Identities=8% Similarity=-0.004 Sum_probs=44.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcE--EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACK--VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..++..+|-++......+..+...+.. +....+..+.+.. ....||+|++...+.. ..+
T Consensus 48 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------------~~~~~D~i~~~~~~~~---~~~ 109 (178)
T 3hm2_A 48 PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDD---------------VPDNPDVIFIGGGLTA---PGV 109 (178)
T ss_dssp SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGG---------------CCSCCSEEEECC-TTC---TTH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhc---------------cCCCCCEEEECCcccH---HHH
Confidence 3467899999998888888777766542 4333332221111 1256999999876655 345
Q ss_pred HHHHHhccCCCCCcEEEEe
Q 042079 97 LKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t 115 (153)
++.+.+.- .+...+++..
T Consensus 110 l~~~~~~L-~~gG~l~~~~ 127 (178)
T 3hm2_A 110 FAAAWKRL-PVGGRLVANA 127 (178)
T ss_dssp HHHHHHTC-CTTCEEEEEE
T ss_pred HHHHHHhc-CCCCEEEEEe
Confidence 55555422 2344444433
No 226
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=56.43 E-value=14 Score=30.51 Aligned_cols=95 Identities=8% Similarity=0.005 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCcEEEEe---cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC--CHHHHHHHHHhccC
Q 042079 31 VDRKIVENLLKNSACKVTTA---ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--TGYELLKKIKESSV 105 (153)
Q Consensus 31 ~~~~~l~~~l~~~~~~v~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--~g~~~~~~lr~~~~ 105 (153)
.-.+.+..+|+..|++|... .+ ++.++... ...+|+|.+...+... ..-++++.|++...
T Consensus 525 ~ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~--------------e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~ 589 (637)
T 1req_B 525 GREGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFK--------------KSGAQVADLCSSAKVYAQQGLEVAKALKAAGA 589 (637)
T ss_dssp HHHHHHHHHHHHTTCBCCEEECCCH-HHHHHHHH--------------HHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHH--------------hcCCCEEEEecccHHHHHHHHHHHHHHHhCCC
Confidence 34467778898899987653 33 55555542 2357888876544421 24567788887652
Q ss_pred CCCCcEEEEeCCCCh--hhHHHHHHhcCcccccCCCChhHHH
Q 042079 106 MKEVPVVVVSSENIP--TRINECLEEGAQMFMLKPLKPSDVK 145 (153)
Q Consensus 106 ~~~~pii~~t~~~~~--~~~~~a~~~ga~~~l~KP~~~~~l~ 145 (153)
..|++.+.... +...+..+ |++.|+.--.+..++.
T Consensus 590 ----~~V~vgG~P~~d~~~~~~~~~-G~D~~~~~g~~~~~~l 626 (637)
T 1req_B 590 ----KALYLSGAFKEFGDDAAEAEK-LIDGRLFMGMDVVDTL 626 (637)
T ss_dssp ----SEEEEESCGGGGGGGHHHHHH-HCCCEECTTCCHHHHH
T ss_pred ----CeEEEeCCCCccchhhHHHHh-ccceEecCCcCHHHHH
Confidence 23456654222 12345556 9999997766666654
No 227
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=56.36 E-value=26 Score=26.79 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred cccEEEEeCCCCCCCH-HHHHHHHHhccCCCCCcEEE--EeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVNLVITDYCMPGMTG-YELLKKIKESSVMKEVPVVV--VSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g-~~~~~~lr~~~~~~~~pii~--~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|+|.+|........ .+.++++|+.. +.+||+. +. +.+....+.+.|+|....
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~--~~~~Vi~G~V~---T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLL--GSRCIMAGNVA---TYAGADYLASCGADIIKA 168 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHH--TTCEEEEEEEC---SHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhc--CCCeEEEcCcC---CHHHHHHHHHcCCCEEEE
No 228
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=55.56 E-value=18 Score=26.69 Aligned_cols=94 Identities=19% Similarity=0.144 Sum_probs=52.5
Q ss_pred eEEEEeCCHHHHH----HHHHHHHhcCc---EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRK----IVENLLKNSAC---KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~----~l~~~l~~~~~---~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.+||-|+|..... .++..-+..+. ....+.+.+++.+.+. ...|+|++|-..| ..-.
T Consensus 165 ~vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~---------------aGaD~I~LDn~~~-e~l~ 228 (285)
T 1o4u_A 165 CVMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVE---------------AGADIVMLDNLSP-EEVK 228 (285)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHH---------------TTCSEEEEESCCH-HHHH
T ss_pred cEEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHH---------------cCCCEEEECCCCH-HHHH
Confidence 3677777765432 23332222322 2335778888877762 3579999997322 1222
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+.++.++... +++|+. .++.-+.+.+.+..+.|+|.+
T Consensus 229 ~av~~l~~~~--~~v~ie-ASGGIt~eni~~~a~tGVD~I 265 (285)
T 1o4u_A 229 DISRRIKDIN--PNVIVE-VSGGITEENVSLYDFETVDVI 265 (285)
T ss_dssp HHHHHHHHHC--TTSEEE-EEECCCTTTGGGGCCTTCCEE
T ss_pred HHHHHhhccC--CCceEE-EECCCCHHHHHHHHHcCCCEE
Confidence 3444454322 355555 455556677777777887654
No 229
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=55.48 E-value=22 Score=25.71 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCcEEEEeCCC------ChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 108 EVPVVVVSSEN------IPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 108 ~~pii~~t~~~------~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
.+|+++++-.+ .+....+|.+.|+++++.-.+.+++..+..
T Consensus 88 ~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~ 134 (252)
T 3tha_A 88 KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLI 134 (252)
T ss_dssp SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHH
T ss_pred CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 37998887632 345667788999999998877777755443
No 230
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=55.15 E-value=14 Score=28.21 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.0
Q ss_pred hhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 120 PTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 120 ~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+...+|++.|.+-++-||++.++..+++..
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~ 114 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTL 114 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHH
Confidence 4567888999999999999999988887654
No 231
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=55.06 E-value=14 Score=26.18 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=36.8
Q ss_pred cccEEEEeCCCCCCCH-------HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPGMTG-------YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g-------~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+|+|++=..-|+..| ++-++++|+.. .+++| .+.+.-+.+...++.+.|++.++
T Consensus 138 ~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~I-~VdGGI~~~ti~~~~~aGAd~~V 199 (227)
T 1tqx_A 138 LINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNI-QVDGGLNIETTEISASHGANIIV 199 (227)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEE-EEESSCCHHHHHHHHHHTCCEEE
T ss_pred CcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCeE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 4788876555555443 55566777643 24444 46666678888999999998764
No 232
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=55.04 E-value=48 Score=23.81 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc--C----------cEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEe
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS--A----------CKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITD 85 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~--~----------~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D 85 (153)
+..++..+|-++...+..+..+ .. + -.+. ...+..+.+.. ...||+|++|
T Consensus 97 ~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~----------------~~~fD~Ii~d 159 (281)
T 1mjf_A 97 DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----------------NRGFDVIIAD 159 (281)
T ss_dssp CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----------------CCCEEEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc----------------cCCeeEEEEC
Confidence 3468999999999888888776 22 1 1222 34454443321 2469999999
Q ss_pred CCCCCCC-----HHHHHHHHHh
Q 042079 86 YCMPGMT-----GYELLKKIKE 102 (153)
Q Consensus 86 ~~~~~~~-----g~~~~~~lr~ 102 (153)
...|... ..++++.+++
T Consensus 160 ~~~~~~~~~~l~~~~~l~~~~~ 181 (281)
T 1mjf_A 160 STDPVGPAKVLFSEEFYRYVYD 181 (281)
T ss_dssp CCCCC-----TTSHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHH
Confidence 7654211 2566777664
No 233
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=55.02 E-value=39 Score=23.51 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=36.8
Q ss_pred cccEEEEeCCCCCC-------CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMPGM-------TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~~~-------~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..|.++++...|+. .+++-++++|+.. +++|+++..+ -+.+...++.+.|+|.++
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~GG-I~~~ni~~~~~aGaD~vv 199 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDGG-LGPSTIDVAASAGANCIV 199 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEESS-CSTTTHHHHHHHTCCEEE
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEECC-cCHHHHHHHHHcCCCEEE
Confidence 47899887766643 2456667777643 3677765444 455777788888998764
No 234
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=54.96 E-value=77 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+..+..+++. ..+|+|...+-.+...+.+++..||+..
T Consensus 346 ~~~~~~~~~~~---~~ipVia~GGI~~~~di~kala~GAd~V 384 (514)
T 1jcn_A 346 AVYKVAEYARR---FGVPIIADGGIQTVGHVVKALALGASTV 384 (514)
T ss_dssp HHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHcCCCee
Confidence 45566666653 2689998777778899999999999764
No 235
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=54.17 E-value=41 Score=24.50 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred CeEEEE-eCCHHH---HHHHHHHHHhcCcEEEE---e----cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 21 PHVLAV-DDSIVD---RKIVENLLKNSACKVTT---A----ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 21 ~~iLii-dd~~~~---~~~l~~~l~~~~~~v~~---~----~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
.+|.++ .++..- .+.++..+++.|..+.. + .+....+..+. ...+|+|++...
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~--------------~~~~d~v~~~~~-- 203 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMK--------------DAKPDAMFVFVP-- 203 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHH--------------HHCCSEEEEECC--
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHH--------------hcCCCEEEEecc--
Confidence 455444 444332 34555666677765432 1 23334444442 135899998643
Q ss_pred CCCHHHHHHHHHhccCCCC-CcEEEEe
Q 042079 90 GMTGYELLKKIKESSVMKE-VPVVVVS 115 (153)
Q Consensus 90 ~~~g~~~~~~lr~~~~~~~-~pii~~t 115 (153)
+.....+++.+++...... +|++...
T Consensus 204 ~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 204 AGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp TTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred chHHHHHHHHHHHcCCCcCCceEEecC
Confidence 3378888999987654322 5665443
No 236
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=54.06 E-value=20 Score=25.98 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=40.1
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
+.||++|+=--.+...|-.-.|.+-.. ..+|.|+++....... .++++..-.+|+.-|
T Consensus 63 ~~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~-kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 63 FEPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLKV-KDEMEEQGLGYILVK 120 (283)
T ss_dssp HCCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGGG-HHHHHHTTCEEEEET
T ss_pred cCCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchhh-HHHHHhcCCcEEEEe
Confidence 568999987666667787777776543 4789999998665553 456665556665544
No 237
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=53.92 E-value=26 Score=27.83 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=41.5
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|+|.+|...+.. ...+.++++++.. +.+|+++ ..-.+.+....+.+.|++.+..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTF--PDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHC--CCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 58999999877653 3467888888754 4677765 3334678888899999998764
No 238
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=53.80 E-value=58 Score=23.33 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=42.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-------cCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN-------SACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~-------~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
+..++..+|-++...+..+..+.. ..+++ ...++.+.+... ...||+|++|...|..
T Consensus 98 ~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v-~~~D~~~~l~~~---------------~~~fD~Ii~d~~~~~~ 161 (275)
T 1iy9_A 98 SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDV-QVDDGFMHIAKS---------------ENQYDVIMVDSTEPVG 161 (275)
T ss_dssp TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEE-EESCSHHHHHTC---------------CSCEEEEEESCSSCCS
T ss_pred CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEE-EECcHHHHHhhC---------------CCCeeEEEECCCCCCC
Confidence 346899999999998888877642 12233 344444433321 3579999999765432
Q ss_pred -----CHHHHHHHHHh
Q 042079 92 -----TGYELLKKIKE 102 (153)
Q Consensus 92 -----~g~~~~~~lr~ 102 (153)
...++++.+++
T Consensus 162 ~~~~l~~~~~~~~~~~ 177 (275)
T 1iy9_A 162 PAVNLFTKGFYAGIAK 177 (275)
T ss_dssp CCCCCSTTHHHHHHHH
T ss_pred cchhhhHHHHHHHHHH
Confidence 12467777664
No 239
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=53.50 E-value=43 Score=21.76 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=40.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++=.. ...-|..+++.+.. .+|+|... . ....+....+..+++. |-+.+++.+.+.+++
T Consensus 98 adi~v~ps~-~e~~~~~~~Eama~-----G~PvI~~~-~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~ 160 (177)
T 2f9f_A 98 CKGLLCTAK-DEDFGLTPIEAMAS-----GKPVIAVN-E---GGFKETVINEKTGYLV-NADVNEIIDAMKKVS 160 (177)
T ss_dssp CSEEEECCS-SCCSCHHHHHHHHT-----TCCEEEES-S---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHH
T ss_pred CCEEEeCCC-cCCCChHHHHHHHc-----CCcEEEeC-C---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHH
Confidence 567765222 23345667777653 56876432 1 3344555667778888 999999998887764
No 240
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=53.20 E-value=58 Score=23.15 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=49.2
Q ss_pred HhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CC-CHHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 41 KNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GM-TGYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 41 ~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~-~g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
++.|.-+. -+.+..|+...+. ..+|+|=+ .| .. .|.++++.++.- .+++|++...+
T Consensus 124 ~~~gi~~ipGv~TptEi~~A~~---------------~Gad~vK~---FPa~~~gG~~~lkal~~p--~p~ip~~ptGG- 182 (232)
T 4e38_A 124 QEIGIDIVPGVNNPSTVEAALE---------------MGLTTLKF---FPAEASGGISMVKSLVGP--YGDIRLMPTGG- 182 (232)
T ss_dssp HHHTCEEECEECSHHHHHHHHH---------------TTCCEEEE---CSTTTTTHHHHHHHHHTT--CTTCEEEEBSS-
T ss_pred HHcCCCEEcCCCCHHHHHHHHH---------------cCCCEEEE---CcCccccCHHHHHHHHHH--hcCCCeeeEcC-
Confidence 33454432 4678888887763 34787765 44 33 389999999863 36788875444
Q ss_pred CChhhHHHHHHhcCcc
Q 042079 118 NIPTRINECLEEGAQM 133 (153)
Q Consensus 118 ~~~~~~~~a~~~ga~~ 133 (153)
-+.+.+.++++.|+..
T Consensus 183 I~~~n~~~~l~aGa~~ 198 (232)
T 4e38_A 183 ITPSNIDNYLAIPQVL 198 (232)
T ss_dssp CCTTTHHHHHTSTTBC
T ss_pred CCHHHHHHHHHCCCeE
Confidence 4678889999988754
No 241
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=53.15 E-value=75 Score=24.40 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCc--EEEEec--CHHHHHHHhchhhhHHhhhhcccCCCcc----cEEEEeCCCCCCCHHHHHHHHHhcc
Q 042079 33 RKIVENLLKNSAC--KVTTAE--NGMRALEFLGLVDEQEQQNNLNSNGTKV----NLVITDYCMPGMTGYELLKKIKESS 104 (153)
Q Consensus 33 ~~~l~~~l~~~~~--~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~~~~----dlii~D~~~~~~~g~~~~~~lr~~~ 104 (153)
...+....++.+. .|.... +..+....+. .. |+.++=. ....-|..+++.+..
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~----------------~a~~~~dv~v~pS-~~Eg~~~~~lEAma~-- 381 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYA----------------YLASKGSVFALTS-FYEPFGLAPVEAMAS-- 381 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHH----------------HHHHTTCEEEECC-SCBCCCSHHHHHHHT--
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHH----------------hcCcCCCEEEECc-ccCCCCcHHHHHHHc--
Confidence 5666777766553 233332 3455555552 25 7777532 223345667776653
Q ss_pred CCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 105 VMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 105 ~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+|+|... . ....+....|..+++..|-+.+++.+.+.+++
T Consensus 382 ---G~PvI~s~-~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll 422 (499)
T 2r60_A 382 ---GLPAVVTR-N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAF 422 (499)
T ss_dssp ---TCCEEEES-S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH
T ss_pred ---CCCEEEec-C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 56887433 2 23455667777889999999999998887764
No 242
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=52.95 E-value=28 Score=28.22 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=41.2
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...|+|++|...... .-+++++++++.. ++++|| ..+-.+.+.....++.|||...
T Consensus 292 AGvD~iviD~ahGhs~~v~~~i~~ik~~~--p~~~vi-aGNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 292 AGLDVVVLDSSQGNSVYQIEFIKWIKQTY--PKIDVI-AGNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp TTCCEEEECCSCCCSHHHHHHHHHHHHHC--TTSEEE-EEEECSHHHHHHHHHHTCSEEE
T ss_pred cCCcEEEEeccccccHHHHHHHHHHHhhC--CcceEE-eccccCHHHHHHHHHcCCCEEe
Confidence 358999999866543 4588889998764 577765 4444577778888899998763
No 243
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=52.91 E-value=63 Score=23.41 Aligned_cols=64 Identities=13% Similarity=0.268 Sum_probs=40.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC-CCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK-PLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K-P~~~~~l~~~~~~~~ 152 (153)
.|+.++-. ....-|..+++.+.- .+|+|....... .+....|..+++.. |-+.+++.+.+.+++
T Consensus 271 ad~~v~ps-~~e~~~~~~~Ea~a~-----G~Pvi~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~ 335 (374)
T 2iw1_A 271 ADLLLHPA-YQEAAGIVLLEAITA-----GLPVLTTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKAL 335 (374)
T ss_dssp CSEEEECC-SCCSSCHHHHHHHHH-----TCCEEEETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCEEEecc-ccCCcccHHHHHHHC-----CCCEEEecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHH
Confidence 46666532 223346677777653 468875433222 23455667788887 899999998887754
No 244
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=52.73 E-value=55 Score=22.67 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=30.9
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.++.++++++. ++|+++..+-.+.+.+.++++.|++.++
T Consensus 175 ~~~~i~~~~~~----~ipvia~GGI~s~~~~~~~~~~Gad~v~ 213 (234)
T 1yxy_A 175 DVALIEALCKA----GIAVIAEGKIHSPEEAKKINDLGVAGIV 213 (234)
T ss_dssp CHHHHHHHHHT----TCCEEEESCCCSHHHHHHHHTTCCSEEE
T ss_pred CHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 46778888763 5899877777779999999999998763
No 245
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=52.47 E-value=85 Score=24.81 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhc-CcEE--EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-----------CCHHHHH
Q 042079 32 DRKIVENLLKNS-ACKV--TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-----------MTGYELL 97 (153)
Q Consensus 32 ~~~~l~~~l~~~-~~~v--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-----------~~g~~~~ 97 (153)
..+.++.+-+.. +..+ ..+.+.+++..+.. ...|.|.+...-.. ...++.+
T Consensus 257 ~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~---------------aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l 321 (490)
T 4avf_A 257 VIERVRWVKQTFPDVQVIGGNIATAEAAKALAE---------------AGADAVKVGIGPGSICTTRIVAGVGVPQISAI 321 (490)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---------------TTCSEEEECSSCSTTCHHHHHTCBCCCHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH---------------cCCCEEEECCCCCcCCCccccCCCCccHHHHH
Confidence 334444444443 3222 23567766655542 35788887432111 2345566
Q ss_pred HHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 98 KKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..+.+......+|+|.-.+-.+..++.+++..||+...
T Consensus 322 ~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~ 359 (490)
T 4avf_A 322 ANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVM 359 (490)
T ss_dssp HHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 66654321236899987777789999999999998753
No 246
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=51.84 E-value=54 Score=22.39 Aligned_cols=117 Identities=9% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEe----------CCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITD----------YCM 88 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D----------~~~ 88 (153)
..+|+++-..+......+.+..+.+.++. ...+.++++...... ...+|+||.- +..
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~------------~~~~dVIISRGgta~~lr~~~~i 71 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL------------QDEVDAIISRGATSDYIKKSVSI 71 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH------------TTTCSEEEEEHHHHHHHHTTCSS
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh------------cCCCeEEEECChHHHHHHHhCCC
Confidence 46899999999999988988887665554 456777787765321 1457888852 233
Q ss_pred C----CCCHHHHHHHHHhccCCCCCcEEEEeCCCCh---hhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 89 P----GMTGYELLKKIKESSVMKEVPVVVVSSENIP---TRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 89 ~----~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~---~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
| ..+|+++++.|.+.... .-+|-+++-.... ....+.+ |.+--....-+.+++.+.+.++
T Consensus 72 PVV~I~~s~~Dil~al~~a~~~-~~kIavvg~~~~~~~~~~~~~ll--~~~i~~~~~~~~~e~~~~i~~l 138 (196)
T 2q5c_A 72 PSISIKVTRFDTMRAVYNAKRF-GNELALIAYKHSIVDKHEIEAML--GVKIKEFLFSSEDEITTLISKV 138 (196)
T ss_dssp CEEEECCCHHHHHHHHHHHGGG-CSEEEEEEESSCSSCHHHHHHHH--TCEEEEEEECSGGGHHHHHHHH
T ss_pred CEEEEcCCHhHHHHHHHHHHhh-CCcEEEEeCcchhhHHHHHHHHh--CCceEEEEeCCHHHHHHHHHHH
Confidence 3 34677777777543221 2244444443322 2223333 3332233345566666666554
No 247
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=51.73 E-value=47 Score=23.21 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++.++.+++. ..+|+++-..-.+.+.+.++++.|++..+.
T Consensus 63 ~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 63 LELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp HHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5566777753 378999877777788899999999987654
No 248
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=51.54 E-value=41 Score=25.04 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCCCeEEEEeCCHHHH-HHHHHHHHhcCcEEEE-ec-CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 18 PKPPHVLAVDDSIVDR-KIVENLLKNSACKVTT-AE-NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~-~~l~~~l~~~~~~v~~-~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
++.++|.||.--..-. ..+..+.+..++++.. ++ +...+-.... .+.+-..+ +--
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------~~g~~~~~------~~~ 82 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTE----------------RFGGEPVE------GYP 82 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHH----------------HHCSEEEE------SHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHH----------------HcCCCCcC------CHH
Confidence 3457899999987766 3445444444676653 33 3333322221 12221111 111
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
+ .+.. +.+=+|+++.+. ..+....|++.|..-++-||+ +.++..++..
T Consensus 83 ~---ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~ 134 (350)
T 3rc1_A 83 A---LLER----DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFA 134 (350)
T ss_dssp H---HHTC----TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred H---HhcC----CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 2 2221 233344444433 355567788888888888986 5556665544
No 249
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=51.23 E-value=48 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+.++++|+.. ++|+++=.+-.+.+...+++..|||.++.
T Consensus 194 ~~~i~~lr~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 194 HHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp HHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 67888888743 67876544445588888889999988744
No 250
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=51.16 E-value=56 Score=22.54 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
..++++.+++.. .+|+++-..-.+.+...++.+.|++.+.
T Consensus 65 ~~~~i~~i~~~~---~ipvi~~g~i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 65 FIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp HHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 466778887643 6899877776777888889999988765
No 251
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=50.91 E-value=41 Score=24.78 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=37.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++..|+... +..+|.+ +. .+.+...+|.+.|+|-+...|++++.+++....
T Consensus 183 ~~av~~ar~~~~-~~~~IgV-ev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~ 236 (286)
T 1x1o_A 183 GEAVRRAKARAP-HYLKVEV-EV-RSLEELEEALEAGADLILLDNFPLEALREAVRR 236 (286)
T ss_dssp HHHHHHHHHHSC-TTSCEEE-EE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCEEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 345666776542 2345544 33 357778889999998888999999999877654
No 252
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=50.89 E-value=6.9 Score=26.74 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=24.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
|+|||........+.++|++.|+.+..+...
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~ 34 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRND 34 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCC
Confidence 8999987766667788898889887766653
No 253
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=50.80 E-value=54 Score=22.04 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=42.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc-EEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSAC-KVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~-~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
.+|..+|-++......+..++..+. .+.. ..+..+.+.. ....||+|++|.-.......++++
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~---------------~~~~fD~V~~~~p~~~~~~~~~l~ 142 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ---------------KGTPHNIVFVDPPFRRGLLEETIN 142 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS---------------CCCCEEEEEECCSSSTTTHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh---------------cCCCCCEEEECCCCCCCcHHHHHH
Confidence 4799999999998888887776664 3333 3343332211 134699999985433334456677
Q ss_pred HHHh
Q 042079 99 KIKE 102 (153)
Q Consensus 99 ~lr~ 102 (153)
.+.+
T Consensus 143 ~l~~ 146 (202)
T 2fpo_A 143 LLED 146 (202)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7754
No 254
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=50.43 E-value=30 Score=25.61 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=42.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh--cC----cEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN--SA----CKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~--~~----~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
+..+|-+||=|+...+..+.+|.. .+ -.+ ....|+.+ .+.. ...+||+||+|...|..
T Consensus 106 ~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~---~l~~------------~~~~yDvIi~D~~dp~~ 170 (294)
T 3o4f_A 106 NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN---FVNQ------------TSQTFDVIISDCTDPIG 170 (294)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTT---TTSC------------SSCCEEEEEESCCCCCC
T ss_pred CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHH---HHhh------------ccccCCEEEEeCCCcCC
Confidence 345788888888888877777632 11 112 23444433 3321 34579999999876643
Q ss_pred -----CHHHHHHHHHhc
Q 042079 92 -----TGYELLKKIKES 103 (153)
Q Consensus 92 -----~g~~~~~~lr~~ 103 (153)
-..+|.+.+++.
T Consensus 171 ~~~~L~t~eFy~~~~~~ 187 (294)
T 3o4f_A 171 PGESLFTSAFYEGCKRC 187 (294)
T ss_dssp TTCCSSCCHHHHHHHHT
T ss_pred CchhhcCHHHHHHHHHH
Confidence 234667777653
No 255
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=50.41 E-value=40 Score=24.78 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
.+.++..|+.. +..+|.+-.. +.+...++.+.|++-++.-.++++++++.+..+
T Consensus 182 ~~av~~ar~~~--~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l 235 (284)
T 1qpo_A 182 VDALRAVRNAA--PDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRR 235 (284)
T ss_dssp HHHHHHHHHHC--TTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45677777654 3347776554 568888999999998888899999998876653
No 256
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=50.36 E-value=31 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCCCCCcEEE--EeCCCChhhHHHHHHhcCcccccCCC
Q 042079 93 GYELLKKIKESSVMKEVPVVV--VSSENIPTRINECLEEGAQMFMLKPL 139 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~--~t~~~~~~~~~~a~~~ga~~~l~KP~ 139 (153)
|.++++.||+.. ++.|+++ ....-.......+.+.|++.+...+.
T Consensus 40 g~~~i~~l~~~~--~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 40 GLSVITAVKKAH--PDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp CTHHHHHHHHHS--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHhC--CCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc
Confidence 445566665532 2345543 22210122345566666665544443
No 257
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=50.07 E-value=33 Score=27.40 Aligned_cols=57 Identities=11% Similarity=0.213 Sum_probs=41.5
Q ss_pred CcccEEEEeCCCCCCC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..+|+|.+|...+... -.++++++++.. +.+|+++ ..-.+.+....+.+.|++.+..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~--~~~~vi~-g~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKY--PSLNIIA-GNVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred hccceEEecccccchhhhhhHHHHHHHhC--CCceEEe-eeeccHHHHHHHHHhCCCEEEE
Confidence 3589999998776543 457888998754 4577764 3334677788899999987753
No 258
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=49.97 E-value=34 Score=23.26 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.3
Q ss_pred HHHHHHhcCccccc
Q 042079 123 INECLEEGAQMFML 136 (153)
Q Consensus 123 ~~~a~~~ga~~~l~ 136 (153)
...+.+.|++.++.
T Consensus 70 ~~~~~~~Gad~v~v 83 (211)
T 3f4w_A 70 SQLLFDAGADYVTV 83 (211)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHhcCCCEEEE
Confidence 45555555555444
No 259
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=49.95 E-value=20 Score=25.59 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=36.1
Q ss_pred CcccEEEEeCCCCC--CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCC
Q 042079 77 TKVNLVITDYCMPG--MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLK 140 (153)
Q Consensus 77 ~~~dlii~D~~~~~--~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~ 140 (153)
...|+|.+..+... .+-+++++++|+ ..+|+++++...+.- ..|+|.+|.-.+.
T Consensus 32 ~GaD~IelG~S~g~t~~~~~~~v~~ir~----~~~Pivl~~y~~n~i------~~gvDg~iipdLp 87 (234)
T 2f6u_A 32 SGTDAVMISGTQNVTYEKARTLIEKVSQ----YGLPIVVEPSDPSNV------VYDVDYLFVPTVL 87 (234)
T ss_dssp TTCSEEEECCCTTCCHHHHHHHHHHHTT----SCCCEEECCSSCCCC------CCCSSEEEEEEET
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHHhcC----CCCCEEEecCCcchh------hcCCCEEEEcccC
Confidence 45799999885332 235666777765 378999998863221 6799998876433
No 260
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=49.76 E-value=69 Score=23.01 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=44.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc-----CcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS-----ACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~-----~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
+..++..+|-++...+..++.+... .-.+ ....+..+.+... ...||+|++|...|...
T Consensus 101 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---------------~~~fD~Ii~d~~~~~~~ 165 (283)
T 2i7c_A 101 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---------------TNTYDVIIVDSSDPIGP 165 (283)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---------------CSCEEEEEEECCCTTTG
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---------------CCCceEEEEcCCCCCCc
Confidence 3468999999999888888776532 1122 2445555443322 35699999997655321
Q ss_pred --H---HHHHHHHHhc
Q 042079 93 --G---YELLKKIKES 103 (153)
Q Consensus 93 --g---~~~~~~lr~~ 103 (153)
. .++++.+++.
T Consensus 166 ~~~l~~~~~l~~~~~~ 181 (283)
T 2i7c_A 166 AETLFNQNFYEKIYNA 181 (283)
T ss_dssp GGGGSSHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHh
Confidence 1 4777777653
No 261
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=49.60 E-value=30 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..+.++++++.. ++||++-.+-.+.+.+.++...|++.++.
T Consensus 189 ~~~~i~~v~~~~---~~pI~vgGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 189 VESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp HHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhc---CCeEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 556788888743 68988777766689999999999988643
No 262
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=49.46 E-value=31 Score=26.24 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=31.7
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG 130 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g 130 (153)
+..|+|++--.||- +++++++++. ..+|+.++--......+..|.+.|
T Consensus 259 EGAD~vMVKPal~Y---LDIi~~vk~~---~~~PvaaYqVSGEYAMikAAa~~G 306 (356)
T 3obk_A 259 EGADMLMVKPGLPY---LDVLAKIREK---SKLPMVAYHVSGEYAMLKAAAEKG 306 (356)
T ss_dssp TTCSEEEEESSGGG---HHHHHHHHHH---CSSCEEEEECHHHHHHHHHHHHHT
T ss_pred cCCCEEEecCCCcH---HHHHHHHHhc---CCCCEEEEEccHHHHHHHHHHHcC
Confidence 45799999865554 7888999875 378998876443444444444333
No 263
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=49.21 E-value=28 Score=26.27 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=34.6
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM 133 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~ 133 (153)
+..|++++--.||- +++++++++.. .+|+.++--......+..|.+.|..+
T Consensus 252 EGAD~vMVKPal~Y---LDIir~vk~~~---~~PvaaYqVSGEYAMikaAa~~GwiD 302 (337)
T 1w5q_A 252 EGADMVMVKPGMPY---LDIVRRVKDEF---RAPTFVYQVSGEYAMHMGAIQNGWLA 302 (337)
T ss_dssp TTCSEEEEESCGGG---HHHHHHHHHHH---CSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred hCCCEEEEcCCCch---HHHHHHHHHhc---CCCEEEEEcCcHHHHHHHHHHcCCcc
Confidence 45799999865554 78899998764 78998886544455555555554433
No 264
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=48.23 E-value=66 Score=22.36 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCcEEEEecCHHH------HHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCC
Q 042079 34 KIVENLLKNSACKVTTAENGMR------ALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMK 107 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~~~~~~~~------a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~ 107 (153)
..+...+++.||.+..+....+ .++.+ ....+|-||+-...+ .+.++.+++ .
T Consensus 27 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l--------------~~~~vdgiIi~~~~~----~~~~~~l~~----~ 84 (276)
T 3jy6_A 27 KGISSILESRGYIGVLFDANADIEREKTLLRAI--------------GSRGFDGLILQSFSN----PQTVQEILH----Q 84 (276)
T ss_dssp HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHH--------------HTTTCSEEEEESSCC----HHHHHHHHT----T
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH--------------HhCCCCEEEEecCCc----HHHHHHHHH----C
Confidence 4445556667887665543221 22222 134577777654332 455566654 2
Q ss_pred CCcEEEEeC
Q 042079 108 EVPVVVVSS 116 (153)
Q Consensus 108 ~~pii~~t~ 116 (153)
.+|+|++..
T Consensus 85 ~iPvV~i~~ 93 (276)
T 3jy6_A 85 QMPVVSVDR 93 (276)
T ss_dssp SSCEEEESC
T ss_pred CCCEEEEec
Confidence 567776644
No 265
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=48.05 E-value=40 Score=25.71 Aligned_cols=57 Identities=7% Similarity=0.121 Sum_probs=38.8
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..+|+|.+|...... ...+.++++++.. +.+|+++- .-.+.+...++.+.|+|.+..
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~--p~v~Vi~G-~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIGG-NVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhc--CCCceEee-eeCCHHHHHHHHHcCCCEEEE
Confidence 358999998644322 3456778888754 46777642 224677888899999987765
No 266
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=48.02 E-value=66 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC 45 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~ 45 (153)
..+|.-+|.++......+..+++.|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 57899999999999999999998775
No 267
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=48.00 E-value=80 Score=23.24 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=40.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc--Cc---EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS--AC---KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~--~~---~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
+..++..+|-++......++.+... ++ .+. ...+..+.+... ...||+|++|...|...
T Consensus 131 ~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---------------~~~fD~Ii~d~~~~~~~ 195 (314)
T 2b2c_A 131 SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH---------------KNEFDVIITDSSDPVGP 195 (314)
T ss_dssp TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC---------------TTCEEEEEECCC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc---------------CCCceEEEEcCCCCCCc
Confidence 4568999999999888888877542 11 232 445555443321 35699999998544211
Q ss_pred --H---HHHHHHHHh
Q 042079 93 --G---YELLKKIKE 102 (153)
Q Consensus 93 --g---~~~~~~lr~ 102 (153)
+ .++++.+++
T Consensus 196 ~~~l~t~~~l~~~~~ 210 (314)
T 2b2c_A 196 AESLFGQSYYELLRD 210 (314)
T ss_dssp --------HHHHHHH
T ss_pred chhhhHHHHHHHHHh
Confidence 1 466666654
No 268
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=47.49 E-value=58 Score=23.19 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=41.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 80 NLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 80 dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
.+|.++. .......++++++++.. ..+|+++=-+-.+.+.+.++++ ||+..+.-.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~--~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVL--DKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHC--SSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhC--CCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 7888887 55555688999998753 2678876666678888888888 999876543
No 269
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=47.20 E-value=23 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCCCCCcEEEEe--CCCChhhHHHHHHhcCccccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVS--SENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t--~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++++++.+++.. .+|++.++ +-.+++.+.++++.|++.++.
T Consensus 228 ~lell~~i~~~~---~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~V 270 (330)
T 2yzr_A 228 LYEVLLEVKKLG---RLPVVNFAAGGVATPADAALMMQLGSDGVFV 270 (330)
T ss_dssp HHHHHHHHHHHT---SCSSEEEECSCCCSHHHHHHHHHTTCSCEEE
T ss_pred hHHHHHHHHHhC---CCCeEEEEECCCCCHHHHHHHHHcCcCEEee
Confidence 458888887743 57886433 334689999999999998753
No 270
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=47.05 E-value=38 Score=26.20 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=38.6
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|+|++|...... .-.++++++++.. .+|+++ ..-.+.+....+.+.|+|.+..
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~---~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcC---CCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 58999998765432 2367888887642 567764 2224678888899999998766
No 271
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=46.83 E-value=83 Score=23.08 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=54.0
Q ss_pred eEEEEeCCHHHHH----HHHHHHHhcCc---EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 22 HVLAVDDSIVDRK----IVENLLKNSAC---KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 22 ~iLiidd~~~~~~----~l~~~l~~~~~---~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
.+||.|+|..... .++..-+..+. ....+.+..++.+.+. ...|+|++|-..|.
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~---------------aGaD~I~ld~~~~~---- 228 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALE---------------AGADLILLDNFPLE---- 228 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHH---------------HTCSEEEEESCCHH----
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH---------------cCCCEEEECCCCHH----
Confidence 4788888876542 23333233322 2346788888877662 24799999974332
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.++...+... .++|+++ ++.-+.+.+.+..+.|++.+
T Consensus 229 -~~k~av~~v~-~~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 229 -ALREAVRRVG-GRVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp -HHHHHHHHHT-TSSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred -HHHHHHHHhC-CCCeEEE-EcCCCHHHHHHHHHcCCCEE
Confidence 2233222111 2567765 55567888889999998765
No 272
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=46.76 E-value=64 Score=23.76 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCCCCeEEEEeCCHHHH-HHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 16 SNPKPPHVLAVDDSIVDR-KIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 16 ~~~~~~~iLiidd~~~~~-~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
+.++..+|.||.--..-+ ..+..+....++++..+.+... ..+.+-.. .+--
T Consensus 21 ~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~---------------------~~~g~~~~------~~~~ 73 (330)
T 4ew6_A 21 QSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG---------------------TVEGVNSY------TTIE 73 (330)
T ss_dssp CCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC---------------------CCTTSEEE------SSHH
T ss_pred ccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh---------------------hhcCCCcc------CCHH
Confidence 335567999999987766 3444444444666554443221 11111111 1222
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
++ |... +.+=+|+++.+. ..+...+|++.|..-++-||+ +.++..+++.
T Consensus 74 ~l---l~~~---~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~ 126 (330)
T 4ew6_A 74 AM---LDAE---PSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEA 126 (330)
T ss_dssp HH---HHHC---TTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHH
T ss_pred HH---HhCC---CCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHH
Confidence 22 3321 133345554433 355567789999999999996 6666666654
No 273
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=46.72 E-value=71 Score=23.12 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.++++++|+. .++|+++=.+-.+++...++ .|+|..+.
T Consensus 191 ~~~v~~vr~~---~~~Pv~vGfGI~t~e~a~~~--~~ADgVIV 228 (271)
T 1ujp_A 191 KDLVRRIKAR---TALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp HHHHHHHHTT---CCSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred HHHHHHHHhh---cCCCEEEEcCCCCHHHHHHh--cCCCEEEE
Confidence 5788888874 36898766665667877775 88988754
No 274
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=46.64 E-value=41 Score=25.11 Aligned_cols=98 Identities=10% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHhcCcEEEE--ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC----C-CCCHHHHHHHHHhccCCCCCc
Q 042079 38 NLLKNSACKVTT--AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM----P-GMTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 38 ~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~----~-~~~g~~~~~~lr~~~~~~~~p 110 (153)
..|+..|+.+.. +.++...+..+. .-++|.|=+|-.+ . +.....+++.+-.....-.+.
T Consensus 219 ~~Lr~~G~~ialDDFGtG~ssl~~L~--------------~lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~ 284 (340)
T 4hjf_A 219 KTLRDAGAGLALDDFGTGFSSLSYLT--------------RLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLE 284 (340)
T ss_dssp HHHHHHTCEEEEECTTSSSCGGGTGG--------------GSCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHcCCCccccCCCCCcchHHHHH--------------hCCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCE
Confidence 445667887655 333333344442 3468999888532 2 223344555442211111344
Q ss_pred EEEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHHHHHHhh
Q 042079 111 VVVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l~~~~~~ 150 (153)
+| .-+-.+.+....+.+.|++ + |+.||+..+++...+.+
T Consensus 285 vv-AEGVEt~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 327 (340)
T 4hjf_A 285 VV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 327 (340)
T ss_dssp EE-EECCCSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHH
T ss_pred EE-EEeCCcHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHHh
Confidence 44 4444567777777888985 3 47899999999877654
No 275
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=46.63 E-value=21 Score=24.85 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=24.8
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEE
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVV 114 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~ 114 (153)
...||+|++...+.-.+-..+++.+++.- .+...+++.
T Consensus 112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L-~pgG~l~~~ 149 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIGFERGMNEWSKYL-KKGGFIAVS 149 (257)
T ss_dssp TTCEEEEEEESCSCCCCHHHHHHHHHTTE-EEEEEEEEE
T ss_pred CCCEEEEEecChHhhcCHHHHHHHHHHHc-CCCcEEEEE
Confidence 35799999987776666677788776532 233344443
No 276
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=46.50 E-value=43 Score=25.29 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=37.1
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.++++.++...... ..++.++++|+.. +.+|+++ ..-.+.+....+.+.|+|.+
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~--~~~~vi~-g~v~t~e~A~~a~~aGaD~I 186 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRF--PQHTIMA-GNVVTGEMVEELILSGADII 186 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHTTCSEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhc--CCCeEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 46788787654322 3567888888754 3677774 23346788889999999876
No 277
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=46.43 E-value=84 Score=22.99 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=44.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh--cC----cEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN--SA----CKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG- 90 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~--~~----~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~- 90 (153)
+..++..+|-++...+..++.+.. .+ -.+ ....+..+.+... ...||+|++|...+.
T Consensus 100 ~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---------------~~~fD~Ii~d~~~~~~ 164 (314)
T 1uir_A 100 TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---------------EERYDVVIIDLTDPVG 164 (314)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---------------CCCEEEEEEECCCCBS
T ss_pred CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc---------------CCCccEEEECCCCccc
Confidence 346899999999988888877643 11 122 2445555443322 356999999986654
Q ss_pred --CC-----HHHHHHHHHhc
Q 042079 91 --MT-----GYELLKKIKES 103 (153)
Q Consensus 91 --~~-----g~~~~~~lr~~ 103 (153)
.. ..++++.+++.
T Consensus 165 ~~~~~~~l~~~~~l~~~~~~ 184 (314)
T 1uir_A 165 EDNPARLLYTVEFYRLVKAH 184 (314)
T ss_dssp TTCGGGGGSSHHHHHHHHHT
T ss_pred ccCcchhccHHHHHHHHHHh
Confidence 11 25777777653
No 278
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=46.07 E-value=96 Score=23.57 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEE
Q 042079 33 RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVV 112 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii 112 (153)
...|..+-++.|..+.+..-..+.++++. .+++=++-+...++.-+.+++.+.+. ..|||
T Consensus 80 ~~~L~~~~~~~Gi~~~st~fD~~svd~l~----------------~~~v~~~KI~S~~~~N~pLL~~va~~----gKPvi 139 (350)
T 3g8r_A 80 MQKLVAEMKANGFKAICTPFDEESVDLIE----------------AHGIEIIKIASCSFTDWPLLERIARS----DKPVV 139 (350)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHH----------------HTTCCEEEECSSSTTCHHHHHHHHTS----CSCEE
T ss_pred HHHHHHHHHHcCCcEEeccCCHHHHHHHH----------------HcCCCEEEECcccccCHHHHHHHHhh----CCcEE
Confidence 45566667778887776655566678773 12333444556667779999998864 46999
Q ss_pred EEeCCCChhhHHHHH
Q 042079 113 VVSSENIPTRINECL 127 (153)
Q Consensus 113 ~~t~~~~~~~~~~a~ 127 (153)
+=|+-.+.++...|.
T Consensus 140 LstGmstl~Ei~~Av 154 (350)
T 3g8r_A 140 ASTAGARREDIDKVV 154 (350)
T ss_dssp EECTTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 888887777766654
No 279
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=46.07 E-value=71 Score=22.06 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCcccEEEEeCC-----CCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHH
Q 042079 76 GTKVNLVITDYC-----MPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINE 125 (153)
Q Consensus 76 ~~~~dlii~D~~-----~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 125 (153)
+..||+||+|-- +.-.+.-++++.|..+. ... -+++|+...+....+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~-~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQ-TVIITGRGCHRDILD 169 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTC-EEEEECSSCCHHHHH
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCC-EEEEECCCCcHHHHH
Confidence 457999999953 23346667888888654 344 555777766665544
No 280
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=45.67 E-value=90 Score=23.14 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=44.9
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcC-c-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSA-C-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~-~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.+||-|+|......+...++ ..+ . ....+++.+++.+.+. ..+|+|++|-..+ -+
T Consensus 182 ~vlikdNHi~~~G~i~~Av~~~r~~~p~~~ieVEvdtlde~~eAl~---------------aGaD~I~LDn~~~----~~ 242 (298)
T 3gnn_A 182 GILIKENHIAAAGGVGEALDAAFALNAEVPVQIEVETLDQLRTALA---------------HGARSVLLDNFTL----DM 242 (298)
T ss_dssp -------------CHHHHHHHHHHHC--CCCEEEESSHHHHHHHHH---------------TTCEEEEEESCCH----HH
T ss_pred EEEEeHHHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH---------------cCCCEEEECCCCH----HH
Confidence 35666666544332332222 222 1 2345888888777662 3589999996332 23
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+-+.++... +++ .+..++.-+.+.+.+..+.|+|.+
T Consensus 243 l~~av~~i~--~~v-~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 243 MRDAVRVTE--GRA-VLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp HHHHHHHHT--TSE-EEEEESSCSTTTHHHHHHTTCSEE
T ss_pred HHHHHHHhC--CCC-eEEEEcCCCHHHHHHHHHcCCCEE
Confidence 222333221 343 455777778888888889999755
No 281
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=45.54 E-value=50 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
.++++++|+.. ++|+++=.+-.+++...++...|+|..+.-
T Consensus 197 ~~~v~~vr~~~---~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 197 HALLERLQQFD---APPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp HHHHHHHHHTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 56788888743 678876455556777777899999988653
No 282
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=45.35 E-value=75 Score=26.22 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
..++|+|+|....+...+.+.++..|+.+.....
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~ 478 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGV 478 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEET
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEC
Confidence 4578999999988888999999999987776543
No 283
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=45.06 E-value=67 Score=21.51 Aligned_cols=68 Identities=10% Similarity=0.077 Sum_probs=41.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc---EEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCc-ccEEEEeCCCCCCCHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSAC---KVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTK-VNLVITDYCMPGMTGYE 95 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~---~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~-~dlii~D~~~~~~~g~~ 95 (153)
.++..+|-++......+..++..+. .+.. ..+..+....+ .... ||+|++|.........+
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~--------------~~~~~fD~I~~~~~~~~~~~~~ 142 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP--------------QNQPHFDVVFLDPPFHFNLAEQ 142 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC--------------CSSCCEEEEEECCCSSSCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh--------------ccCCCCCEEEECCCCCCccHHH
Confidence 4799999999988888887776654 3433 33433321111 1246 99999986533333445
Q ss_pred HHHHHHh
Q 042079 96 LLKKIKE 102 (153)
Q Consensus 96 ~~~~lr~ 102 (153)
+++.+.+
T Consensus 143 ~l~~~~~ 149 (201)
T 2ift_A 143 AISLLCE 149 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666643
No 284
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=44.58 E-value=27 Score=26.24 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=33.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA 131 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga 131 (153)
..|++++--.||- +++++++++.. .+|+.++--......+..|.+.|.
T Consensus 246 GAD~vMVKPal~Y---LDIir~vk~~~---~~P~aaYqVSGEYAMikaAa~~Gw 293 (328)
T 1w1z_A 246 GADIVMVKPGLAY---LDIVWRTKERF---DVPVAIYHVSGEYAMVKAAAAKGW 293 (328)
T ss_dssp TCSEEEEESCGGG---HHHHHHHHHHH---CSCEEEEECHHHHHHHHHHHHTTS
T ss_pred CCCEEEEcCCCch---HHHHHHHHHhc---CCCEEEEEccHHHHHHHHHHHcCC
Confidence 5799999865554 78899998764 789988865444444455555543
No 285
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=44.35 E-value=40 Score=24.64 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------cc-CCCChhHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------ML-KPLKPSDVK 145 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~-KP~~~~~l~ 145 (153)
+++++++++.. +++|||....-.+.+.+.+++..||+.. +. .|.-..++.
T Consensus 232 ~~~i~~v~~~~--~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~ 288 (314)
T 2e6f_A 232 LANVNAFYRRC--PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLE 288 (314)
T ss_dssp HHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHH
Confidence 67888888743 5799998888788999999999998764 32 565455544
No 286
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=44.11 E-value=61 Score=21.72 Aligned_cols=35 Identities=3% Similarity=0.006 Sum_probs=23.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEe-cCHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTA-ENGMR 55 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~-~~~~~ 55 (153)
|+|||....-.....+...|.+.|+.|... .+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK 36 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 468888887777777777776678776643 44433
No 287
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=44.09 E-value=27 Score=24.44 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHh---cCccc------ccCCCChhHHHHHH
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEE---GAQMF------MLKPLKPSDVKKLT 148 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~---ga~~~------l~KP~~~~~l~~~~ 148 (153)
.++.++++++.. .+|+|+..+-.+.+.+.++++. |++.+ +..|+++.++.+.+
T Consensus 178 ~~~~~~~i~~~~---~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 178 NLELLKNVCAAT---DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT 239 (244)
T ss_dssp CHHHHHHHHHTC---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred CHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHHh
Confidence 478888888642 6899988777777889999988 98764 44677777766544
No 288
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.09 E-value=53 Score=20.04 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=33.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHh
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFL 60 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l 60 (153)
..|.+...++...+..+.+++..|+.+..+.+..+.-..+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsi 42 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSI 42 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHH
Confidence 4566777888888899999999999999999998865554
No 289
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=43.66 E-value=93 Score=22.71 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=39.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh--cC---cEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN--SA---CKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~--~~---~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
+..++..+|-++...+..++.+.. .+ -.+ ....+..+.+... ...||+|++|...+..
T Consensus 118 ~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~---------------~~~fD~Ii~d~~~~~~~ 182 (304)
T 2o07_A 118 SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN---------------QDAFDVIITDSSDPMGP 182 (304)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC---------------SSCEEEEEEECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC---------------CCCceEEEECCCCCCCc
Confidence 346899999999988888877653 11 122 2345554433321 3569999999765422
Q ss_pred ----CHHHHHHHHHh
Q 042079 92 ----TGYELLKKIKE 102 (153)
Q Consensus 92 ----~g~~~~~~lr~ 102 (153)
...++++.+++
T Consensus 183 ~~~l~~~~~l~~~~~ 197 (304)
T 2o07_A 183 AESLFKESYYQLMKT 197 (304)
T ss_dssp ------CHHHHHHHH
T ss_pred chhhhHHHHHHHHHh
Confidence 12346666654
No 290
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=43.53 E-value=57 Score=21.04 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=16.2
Q ss_pred CCeEEEEeCCHHH----------HHHHHHHHHhcCc
Q 042079 20 PPHVLAVDDSIVD----------RKIVENLLKNSAC 45 (153)
Q Consensus 20 ~~~iLiidd~~~~----------~~~l~~~l~~~~~ 45 (153)
.++|+++.|+... ...+...|...+.
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~ 37 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQS 37 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCC
Confidence 4577788877654 4556666665443
No 291
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=43.47 E-value=39 Score=23.70 Aligned_cols=55 Identities=7% Similarity=0.146 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhccCCCCCcEE--EEeCCCChhhHHHHHHhcCcccccCCC--ChhHHHHHHhh
Q 042079 92 TGYELLKKIKESSVMKEVPVV--VVSSENIPTRINECLEEGAQMFMLKPL--KPSDVKKLTGH 150 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii--~~t~~~~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~~ 150 (153)
.|.++++.||+.. +.|+. +++. +.......+.+.|++.+..... ..+...+.+++
T Consensus 49 ~g~~~v~~lr~~~---~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~ 107 (230)
T 1tqj_A 49 IGPLIVDAIRPLT---KKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQ 107 (230)
T ss_dssp BCHHHHHHHGGGC---CSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHH
T ss_pred hhHHHHHHHHhhc---CCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcccccchhHHHHHHH
Confidence 4779999998743 34554 5554 3345667889999998755444 33344444443
No 292
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=43.35 E-value=79 Score=24.28 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=46.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcE---EE-EecCHHHHHH-HhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACK---VT-TAENGMRALE-FLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~---v~-~~~~~~~a~~-~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.+|..+|-++...+.++.-++..+.. +. ...+..+.+. .. ...||+|++|. +.. ..+
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---------------~~~fD~V~lDP--~g~-~~~ 139 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---------------GFGFDYVDLDP--FGT-PVP 139 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---------------SSCEEEEEECC--SSC-CHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---------------CCCCcEEEECC--CcC-HHH
Confidence 46899999999999998888876652 43 3445444433 22 24699999997 222 234
Q ss_pred HHHHHHhccCCCCCcEEEEeCCC
Q 042079 96 LLKKIKESSVMKEVPVVVVSSEN 118 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~ 118 (153)
+++...+.- ..--++.++...
T Consensus 140 ~l~~a~~~L--k~gGll~~t~t~ 160 (392)
T 3axs_A 140 FIESVALSM--KRGGILSLTATD 160 (392)
T ss_dssp HHHHHHHHE--EEEEEEEEEECC
T ss_pred HHHHHHHHh--CCCCEEEEEecc
Confidence 555443311 112366666543
No 293
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=43.22 E-value=70 Score=21.21 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc-EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC-KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~-~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
..++..+|-++......+..++..+. .+. ...+..+.+. ....||+|+++.... +-..++
T Consensus 64 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------------~~~~~D~i~~~~~~~--~~~~~l 125 (204)
T 3e05_A 64 NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD----------------DLPDPDRVFIGGSGG--MLEEII 125 (204)
T ss_dssp TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT----------------TSCCCSEEEESCCTT--CHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh----------------cCCCCCEEEECCCCc--CHHHHH
Confidence 35788888888777777766655442 122 1222211111 124699999987655 455677
Q ss_pred HHHHhccCCCCCcEEEEe
Q 042079 98 KKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~t 115 (153)
+.+.+.- .+...+++.+
T Consensus 126 ~~~~~~L-kpgG~l~~~~ 142 (204)
T 3e05_A 126 DAVDRRL-KSEGVIVLNA 142 (204)
T ss_dssp HHHHHHC-CTTCEEEEEE
T ss_pred HHHHHhc-CCCeEEEEEe
Confidence 7766532 2444455443
No 294
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=42.58 E-value=69 Score=20.90 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=61.7
Q ss_pred CCeEEEEeCCH-HHHHHHHHHHHhcCcEEEE---ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 20 PPHVLAVDDSI-VDRKIVENLLKNSACKVTT---AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 20 ~~~iLiidd~~-~~~~~l~~~l~~~~~~v~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
..+++++.+.+ .....+..++++.+ .+.. .-+..+....+ ...|++++-... ..-|..
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~----------------~~ad~~l~ps~~-e~~~~~ 131 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELY----------------GSVDFVIIPSYF-EPFGLV 131 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHH----------------TTCSEEEECCSC-CSSCHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHH----------------HHCCEEEECCCC-CCccHH
Confidence 35666666543 24455666666555 3433 22333544444 235788764332 334667
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
+++.+.. .+|+|.. .. ....+.. .|-.+++..|-+.+++.+.+.+++
T Consensus 132 ~~Ea~a~-----G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~ 178 (200)
T 2bfw_A 132 ALEAMCL-----GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKAL 178 (200)
T ss_dssp HHHHHHT-----TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHC-----CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHH
Confidence 7777653 5676643 22 2334455 677889999999999988777653
No 295
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=42.52 E-value=94 Score=22.50 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
.+.++..|+... ...++++-+. +.+...++.+.|++-...-+++++.++++...
T Consensus 169 ~~ai~~~r~~~~-~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~ 222 (273)
T 2b7n_A 169 KSFLTHARKNLP-FTAKIEIECE--SFEEAKNAMNAGADIVMCDNLSVLETKEIAAY 222 (273)
T ss_dssp HHHHHHHGGGSC-TTCCEEEEES--SHHHHHHHHHHTCSEEEEETCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCceEEEEcC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 556777776542 2346666553 45678889999999888889999999876654
No 296
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=42.49 E-value=1e+02 Score=22.79 Aligned_cols=79 Identities=10% Similarity=0.159 Sum_probs=47.9
Q ss_pred hcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC--CCCH----------HHHHHHH----Hhcc
Q 042079 42 NSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP--GMTG----------YELLKKI----KESS 104 (153)
Q Consensus 42 ~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~--~~~g----------~~~~~~l----r~~~ 104 (153)
+.|. .+..+.+.+++..+.. -.+|+|.+...+. +.-| .+.++.+ ++.+
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~---------------agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vn 225 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAK---------------AGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIR 225 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHH---------------HTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCeEEEecCCHHHHHHHHH---------------cCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhC
Confidence 3454 4567888888876652 3589999886542 1111 2333333 3332
Q ss_pred CCCCCcEEEEe-CCCChhhHHHHHHh--cCcccccC
Q 042079 105 VMKEVPVVVVS-SENIPTRINECLEE--GAQMFMLK 137 (153)
Q Consensus 105 ~~~~~pii~~t-~~~~~~~~~~a~~~--ga~~~l~K 137 (153)
+++.++.-. +-.++++...+++. |+++|+.-
T Consensus 226 --pdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 226 --DDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp --SCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred --CCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 455444444 33578899999998 99998753
No 297
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=42.45 E-value=1.1e+02 Score=23.25 Aligned_cols=107 Identities=9% Similarity=0.033 Sum_probs=60.0
Q ss_pred CCeEEEEeCCH-HHHHHHHHHHHhcCcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSI-VDRKIVENLLKNSACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..+++|+.+.+ .....++.+.++.+-.+. ...+..+....+. ..|+.++=-. ...-|+.+
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~----------------~adv~v~pS~-~E~~~~~~ 382 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQA----------------GCDAIIIPSR-FEPCGLTQ 382 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHH----------------HCSEEEECCS-CCSSCSHH
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHh----------------cCCEEEECcc-cCCCCHHH
Confidence 34666776653 244555555554432232 2223333223331 2577665322 23345666
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc---------CcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEG---------AQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g---------a~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++.+.. .+|+|. +.. ....+....| ..+++..|-+.+++.+.+.+++
T Consensus 383 lEAma~-----G~PvI~-s~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 383 LYALRY-----GCIPVV-ART---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp HHHHHH-----TCEEEE-ESS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred HHHHHC-----CCCEEE-eCC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 776653 468775 322 3344555666 7889999999999988887764
No 298
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=42.08 E-value=56 Score=19.70 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=22.7
Q ss_pred cEEEEeCCCC--CC-----CHHHHHHHHHhccCCCCCcEEEEeCCCChh
Q 042079 80 NLVITDYCMP--GM-----TGYELLKKIKESSVMKEVPVVVVSSENIPT 121 (153)
Q Consensus 80 dlii~D~~~~--~~-----~g~~~~~~lr~~~~~~~~pii~~t~~~~~~ 121 (153)
.++++|+.-. +. ...++++.|++. .+++.++|+.....
T Consensus 3 k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~----G~~~~i~S~~~~~~ 47 (137)
T 2pr7_A 3 RGLIVDYAGVLDGTDEDQRRWRNLLAAAKKN----GVGTVILSNDPGGL 47 (137)
T ss_dssp CEEEECSTTTTSSCHHHHHHHHHHHHHHHHT----TCEEEEEECSCCGG
T ss_pred cEEEEeccceecCCCccCccHHHHHHHHHHC----CCEEEEEeCCCHHH
Confidence 4677776332 11 134567777763 46888888865544
No 299
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=42.01 E-value=39 Score=24.24 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=33.3
Q ss_pred cccEEEEeCCCCCCCH-------HHHHHHHHhccC--CCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 78 KVNLVITDYCMPGMTG-------YELLKKIKESSV--MKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g-------~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+|.|++=...|+..| ++-++++|+... ..+++ |.+.+.-+.+...++.+.||+.++.
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCE-EEEESSCCTTTHHHHHTTTCCEEEE
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCee-EEEECCcCHHHHHHHHHcCCCEEEE
Confidence 4677765333455444 444555554211 12344 4466666778888999999987643
No 300
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=41.97 E-value=47 Score=23.49 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=24.0
Q ss_pred CcccEEEEeC-CCCCCCHHHHHHHHHhccCCCCCcEEEEeC
Q 042079 77 TKVNLVITDY-CMPGMTGYELLKKIKESSVMKEVPVVVVSS 116 (153)
Q Consensus 77 ~~~dlii~D~-~~~~~~g~~~~~~lr~~~~~~~~pii~~t~ 116 (153)
.++|+|++|- ++-+.+-.+++..|.. ..+|||+..-
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~----~gi~Vi~~GL 136 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA----DGHRVIVAGL 136 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH----TTCEEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH----CCCEEEEeec
Confidence 4689999984 4444456777777763 2578876654
No 301
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=41.94 E-value=68 Score=20.65 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=17.3
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCC
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENI 119 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~ 119 (153)
...++++.|++. ..++.++|+...
T Consensus 31 g~~~~l~~L~~~----g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 31 GSLQAIARLTQA----DWTVVLATNQSG 54 (179)
T ss_dssp THHHHHHHHHHT----TCEEEEEEECTT
T ss_pred CHHHHHHHHHHC----CCEEEEEECCCc
Confidence 456888888874 467888887654
No 302
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=41.51 E-value=85 Score=21.68 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=45.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..|+. +. ...+..+.+..+... ......||+|++|... .+-..+
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~---------~~~~~~fD~I~~d~~~--~~~~~~ 163 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQG---------QESEGSYDFGFVDADK--PNYIKY 163 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS---------TTCTTCEEEEEECSCG--GGHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---------cCCCCCcCEEEECCch--HHHHHH
Confidence 468999999999999988888877652 33 445655554433100 0002469999999643 233455
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 164 l~~~~~ 169 (237)
T 3c3y_A 164 HERLMK 169 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 303
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=41.23 E-value=1.1e+02 Score=22.96 Aligned_cols=95 Identities=9% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhc-CcE--EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-----------CCCHHH
Q 042079 30 IVDRKIVENLLKNS-ACK--VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-----------GMTGYE 95 (153)
Q Consensus 30 ~~~~~~l~~~l~~~-~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-----------~~~g~~ 95 (153)
....+.++.+-+.. +.- +..+.+.+++..... ..+|.|.+...-. ....+.
T Consensus 146 ~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~---------------aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~ 210 (351)
T 2c6q_A 146 EHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELIL---------------SGADIIKVGIGPGSVCTTRKKTGVGYPQLS 210 (351)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---------------TTCSEEEECSSCSTTBCHHHHHCBCCCHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHH---------------hCCCEEEECCCCCcCcCccccCCCCccHHH
Confidence 33445555554444 443 345778887766552 3578887753211 112233
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCC
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPL 139 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~ 139 (153)
.+..+.+......+|+|.-.+-.+..++.+|+..||+.. +-+|+
T Consensus 211 ~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 211 AVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 444443211112589988777788999999999999874 44555
No 304
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=40.88 E-value=28 Score=25.71 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=48.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC------C
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG------M 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~------~ 91 (153)
+..+++.+|-|+......+..+...|..... ..+... . .-..++|++++-..+|- .
T Consensus 155 p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~--~---------------~p~~~~DvaL~lkti~~Le~q~kg 217 (281)
T 3lcv_B 155 AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE--D---------------RLDEPADVTLLLKTLPCLETQQRG 217 (281)
T ss_dssp TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT--S---------------CCCSCCSEEEETTCHHHHHHHSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecc--c---------------CCCCCcchHHHHHHHHHhhhhhhH
Confidence 6679999999999999999999877754322 111110 1 12567999998876653 2
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
.|+.+++.|+ .|.|+++.+
T Consensus 218 ~g~~ll~aL~-------~~~vvVSfp 236 (281)
T 3lcv_B 218 SGWEVIDIVN-------SPNIVVTFP 236 (281)
T ss_dssp HHHHHHHHSS-------CSEEEEEEE
T ss_pred HHHHHHHHhC-------CCCEEEecc
Confidence 4555555543 355666554
No 305
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=40.85 E-value=68 Score=20.33 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCC-ChhHHHHHHhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPL-KPSDVKKLTGH 150 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~-~~~~l~~~~~~ 150 (153)
.++++.+++. ..+++++|+.........+...|...|+..+- .+.-+..++.+
T Consensus 42 ~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~ 95 (162)
T 2p9j_A 42 GIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEK 95 (162)
T ss_dssp HHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHH
Confidence 4788888763 46899899876665555556778877764332 33334444443
No 306
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=40.77 E-value=70 Score=23.55 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=39.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|+.++-.. ...-|..+++.+.. .+|+|........ +....|-.+++..|-+.+++.+.+.+++
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma~-----G~PvI~~~~~~~~----e~v~~~~~g~~~~~~d~~~la~~i~~l~ 348 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMAC-----GVPCIGTRVGGIP----EVIQHGDTGYLCEVGDTTGVADQAIQLL 348 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHHT-----TCCEEEECCTTST----TTCCBTTTEEEECTTCHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHhc-----CCCEEEecCCChH----HHhhcCCceEEeCCCCHHHHHHHHHHHH
Confidence 466665322 33346667777653 5688754432222 2334566788999999999988777653
No 307
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=40.68 E-value=29 Score=24.90 Aligned_cols=86 Identities=6% Similarity=-0.077 Sum_probs=48.8
Q ss_pred HHHHHHH---hcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-CC-CCHHHHHHHHHhccC--C
Q 042079 35 IVENLLK---NSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-PG-MTGYELLKKIKESSV--M 106 (153)
Q Consensus 35 ~l~~~l~---~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-~~-~~g~~~~~~lr~~~~--~ 106 (153)
.++.++. ..|..+ ..+++..|+...+. ...|+|-+.... .+ ...++.+++|.+... .
T Consensus 142 ~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~---------------~gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~ 206 (254)
T 1vc4_A 142 LTGAYLEEARRLGLEALVEVHTERELEIALE---------------AGAEVLGINNRDLATLHINLETAPRLGRLARKRG 206 (254)
T ss_dssp GHHHHHHHHHHHTCEEEEEECSHHHHHHHHH---------------HTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH---------------cCCCEEEEccccCcCCCCCHHHHHHHHHhCcccc
Confidence 4444444 567654 45777777654442 124677553321 11 112344445543211 0
Q ss_pred CCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 107 KEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 107 ~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.++|+|..++-.+.+++.++.+ |++.++.
T Consensus 207 ~~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 207 FGGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CCSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 1568888777777999999999 9998854
No 308
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=40.25 E-value=1.2e+02 Score=22.82 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=55.0
Q ss_pred eEEEEeCCHHHHHHHHHHHH----hcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHH
Q 042079 22 HVLAVDDSIVDRKIVENLLK----NSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYE 95 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~----~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~ 95 (153)
.+||-|+|......+...++ ..+. ....+.+..++.+.+. ..+|+|.+|-. +- +
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~---------------aGaD~I~LDn~----~~-~ 263 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAIS---------------AGADIIMLDNF----SL-E 263 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHH---------------TTCSEEEEESC----CH-H
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHH---------------cCCCEEEECCC----CH-H
Confidence 47888877554433333332 2222 2457888888877662 35799999963 22 3
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+++..+... +++ .|..++.-+.+.+.+..+.|+|.+
T Consensus 264 ~l~~av~~l~-~~v-~ieaSGGIt~~~I~~~a~tGVD~i 300 (320)
T 3paj_A 264 MMREAVKINA-GRA-ALENSGNITLDNLKECAETGVDYI 300 (320)
T ss_dssp HHHHHHHHHT-TSS-EEEEESSCCHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHhC-CCC-eEEEECCCCHHHHHHHHHcCCCEE
Confidence 3343332211 344 455777778888888888998765
No 309
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=39.85 E-value=37 Score=22.61 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=46.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEE-EEecCHH---HHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC---
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKV-TTAENGM---RALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM--- 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v-~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~--- 91 (153)
+..+|+++.|+....-.+...|... +.+ ...-++. ..+..+... . ...+||+|++-+...+.
T Consensus 33 ~~~~i~~~GDSit~g~~~~~~l~~~-~~v~n~g~~G~~~~~~~~~l~~~--------~--~~~~pd~vvi~~G~ND~~~~ 101 (214)
T 2hsj_A 33 VEPNILFIGDSIVEYYPLQELFGTS-KTIVNRGIRGYQTGLLLENLDAH--------L--YGGAVDKIFLLIGTNDIGKD 101 (214)
T ss_dssp SCCSEEEEESHHHHTCCHHHHHCSS-SCEEEEECTTCCHHHHHHTGGGG--------C--CCSCCCEEEEECCHHHHHTT
T ss_pred ccCCEEEEecchhcCCCHHHHcCCc-ceEEecCccchhHHHHHHHhhHH--------H--HhcCCCEEEEEEecCcCCcC
Confidence 4578999999987665566666532 222 3333333 333333110 0 23468999986643321
Q ss_pred -C-------HHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 92 -T-------GYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 92 -~-------g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
+ -..+++.+++.. +..+|++++..
T Consensus 102 ~~~~~~~~~l~~~i~~l~~~~--p~~~iil~~~~ 133 (214)
T 2hsj_A 102 VPVNEALNNLEAIIQSVARDY--PLTEIKLLSIL 133 (214)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC--TTCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCeEEEEecC
Confidence 1 123455666543 45678777654
No 310
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=39.67 E-value=66 Score=19.87 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+++.++.| +.+... ++-.|+++..+.+.+++.+.+..... ...+.+|+++-..-.. --+.++
T Consensus 2 ~~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~----------~~digIIlIte~~a~~-i~~~i~ 65 (109)
T 2d00_A 2 VPVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVE----------RGGYALVAVDEALLPD-PERAVE 65 (109)
T ss_dssp CCCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHH----------HCCCSEEEEETTTCSC-HHHHHH
T ss_pred CccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhh----------CCCeEEEEEeHHHHHh-hHHHHH
Confidence 3467889998 443322 23468888888888887766643221 2458899998776653 234455
Q ss_pred HHHhccCCCCCcEEEEeCC
Q 042079 99 KIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~ 117 (153)
+++.. ...|+|+..+.
T Consensus 66 ~~~~~---~~~P~Il~IPs 81 (109)
T 2d00_A 66 RLMRG---RDLPVLLPIAG 81 (109)
T ss_dssp HHTTC---CCCCEEEEESC
T ss_pred HHHhC---CCCeEEEEECC
Confidence 55422 34677776654
No 311
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=39.60 E-value=98 Score=21.85 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCcEEEEecCHHH------HHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCC
Q 042079 33 RKIVENLLKNSACKVTTAENGMR------ALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVM 106 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~~~------a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~ 106 (153)
...+...+++.||.+..+....+ .++.+ ....+|-||+-..... -+.++.+++.
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l--------------~~~~vdgiIi~~~~~~---~~~~~~l~~~--- 105 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMI--------------QSKSVDGFILLYSLKD---DPIEHLLNEF--- 105 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHH--------------HTTCCSEEEESSCBTT---CHHHHHHHHT---
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH--------------HhCCCCEEEEeCCcCC---cHHHHHHHHc---
Confidence 34555666678998877654322 12222 1346787776432222 1556666652
Q ss_pred CCCcEEEEeCC
Q 042079 107 KEVPVVVVSSE 117 (153)
Q Consensus 107 ~~~pii~~t~~ 117 (153)
.+|+|++...
T Consensus 106 -~iPvV~i~~~ 115 (305)
T 3huu_A 106 -KVPYLIVGKS 115 (305)
T ss_dssp -TCCEEEESCC
T ss_pred -CCCEEEECCC
Confidence 5788877543
No 312
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=39.49 E-value=38 Score=24.78 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=33.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--------CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNS--------ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~--------~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
..+|..+|-++...+..++.+... .+++. ..++.+.+.. ....||+||+|...|..
T Consensus 107 ~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~-~~D~~~~l~~---------------~~~~fDvIi~D~~~p~~ 170 (294)
T 3adn_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV-IDDGVNFVNQ---------------TSQTFDVIISDCTDPIG 170 (294)
T ss_dssp CCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEE-CSCSCC---C---------------CCCCEEEEEECC-----
T ss_pred CCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEE-EChHHHHHhh---------------cCCCccEEEECCCCccC
Confidence 356777777777666666655421 12222 2222222211 13579999999866543
Q ss_pred CH-----HHHHHHHHh
Q 042079 92 TG-----YELLKKIKE 102 (153)
Q Consensus 92 ~g-----~~~~~~lr~ 102 (153)
.. .++++.+++
T Consensus 171 ~~~~l~~~~f~~~~~~ 186 (294)
T 3adn_A 171 PGESLFTSAFYEGCKR 186 (294)
T ss_dssp -----CCHHHHHHHHH
T ss_pred cchhccHHHHHHHHHH
Confidence 22 567777765
No 313
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=39.43 E-value=1.2e+02 Score=22.86 Aligned_cols=90 Identities=16% Similarity=0.058 Sum_probs=57.5
Q ss_pred HHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC----C-CCCHHHHHHHHHhccCC
Q 042079 34 KIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM----P-GMTGYELLKKIKESSVM 106 (153)
Q Consensus 34 ~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~----~-~~~g~~~~~~lr~~~~~ 106 (153)
+.++.+-+..+ +.+..+.+.+++..... ..+|.|.+.-+- . ....++.+..+++.. .
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~---------------~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~-~ 278 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQ---------------HGAAGIIVSNHGARQLDYVPATIMALEEVVKAA-Q 278 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHH---------------TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHH---------------cCCCEEEECCCCCccCCCcccHHHHHHHHHHHh-C
Confidence 44555555444 33445677777655542 357888874311 1 124567778777632 1
Q ss_pred CCCcEEEEeCCCChhhHHHHHHhcCcccc-cCCC
Q 042079 107 KEVPVVVVSSENIPTRINECLEEGAQMFM-LKPL 139 (153)
Q Consensus 107 ~~~pii~~t~~~~~~~~~~a~~~ga~~~l-~KP~ 139 (153)
.++|+|.-.+-.+..++.+++..||+... -+|+
T Consensus 279 ~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~ 312 (370)
T 1gox_A 279 GRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPV 312 (370)
T ss_dssp TSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHH
Confidence 36899988888889999999999998863 3454
No 314
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=39.24 E-value=54 Score=23.30 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=46.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEe-cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-CHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTA-ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-TGYELL 97 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-~g~~~~ 97 (153)
..++..+|-++......+..+...+..+... .+..+ +. ....||+|++...+... +-..++
T Consensus 47 ~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~----~~-------------~~~~fD~v~~~~~l~~~~~~~~~l 109 (284)
T 3gu3_A 47 GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE----IE-------------LNDKYDIAICHAFLLHMTTPETML 109 (284)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT----CC-------------CSSCEEEEEEESCGGGCSSHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh----cC-------------cCCCeeEEEECChhhcCCCHHHHH
Confidence 4688999999988888887777665544432 22221 10 13479999998755433 445677
Q ss_pred HHHHhccCCCCCcEEEE
Q 042079 98 KKIKESSVMKEVPVVVV 114 (153)
Q Consensus 98 ~~lr~~~~~~~~pii~~ 114 (153)
+.+++.- .+...+++.
T Consensus 110 ~~~~~~L-kpgG~l~~~ 125 (284)
T 3gu3_A 110 QKMIHSV-KKGGKIICF 125 (284)
T ss_dssp HHHHHTE-EEEEEEEEE
T ss_pred HHHHHHc-CCCCEEEEE
Confidence 7776532 233344433
No 315
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=38.68 E-value=1.2e+02 Score=22.40 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.++..++.. +..++++-+ .+.+...++.+.|++....-+++++.++++...+
T Consensus 197 ~ai~~~r~~~--~~~kI~vev--~tlee~~eA~~aGaD~I~ld~~~~e~l~~~v~~~ 249 (296)
T 1qap_A 197 QAVEKAFWLH--PDVPVEVEV--ENLDELDDALKAGADIIMLDNFNTDQMREAVKRV 249 (296)
T ss_dssp HHHHHHHHHS--TTSCEEEEE--SSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHTT
T ss_pred HHHHHHHHhC--CCCcEEEEe--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
No 316
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=38.46 E-value=47 Score=24.05 Aligned_cols=50 Identities=12% Similarity=0.298 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccCCCChhHHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLKPLKPSDVKK 146 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~KP~~~~~l~~ 146 (153)
+++++++++. .++|||....-.+.+.+.+++..||+.. +..|....++.+
T Consensus 230 ~~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~ 285 (311)
T 1ep3_A 230 LKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIID 285 (311)
T ss_dssp HHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHH
Confidence 4777778763 3789987777778899999999998754 445555555543
No 317
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=38.42 E-value=63 Score=23.44 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
-.++++++|+. .++|+++=.+-.+++...++...|+|.++.--
T Consensus 194 ~~~~v~~vr~~---~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 194 IENILTQLAEF---NAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHHHHHHHHTT---TCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 35677888764 36788754444567777778999999986643
No 318
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=38.29 E-value=42 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccCCCCCcEEE--EeCCCChhhHHHHHHhcCccccc
Q 042079 93 GYELLKKIKESSVMKEVPVVV--VSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~--~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+++++++++.. ++|+++ ..+-.+.+.+.+++..|++.++.
T Consensus 195 ~~~ll~~i~~~~---~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 195 PIDLILLTRKLK---RLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp CHHHHHHHHHHT---SCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHhc---CCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 367778887643 567764 33344788899999999998753
No 319
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=37.98 E-value=45 Score=25.34 Aligned_cols=51 Identities=8% Similarity=-0.054 Sum_probs=38.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc------ccC-CCChhHHHH
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF------MLK-PLKPSDVKK 146 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~------l~K-P~~~~~l~~ 146 (153)
++.++++++. .+++|||....-.+.+++.+++..||+.. +.. |.-..++.+
T Consensus 265 ~~~i~~v~~~--~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~ 322 (354)
T 4ef8_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTS 322 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHH
Confidence 7778888875 25799998888888999999999998764 344 655555544
No 320
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=37.88 E-value=70 Score=24.15 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=56.1
Q ss_pred HHHhcCcEEE--EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-----CCCCHHHHHHHHHhccCCCCCcE
Q 042079 39 LLKNSACKVT--TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-----PGMTGYELLKKIKESSVMKEVPV 111 (153)
Q Consensus 39 ~l~~~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-----~~~~g~~~~~~lr~~~~~~~~pi 111 (153)
.|+..|+.+. -+.++...+..+ ..-++|.|=+|-.+ .+.....+++.+-.....-.+.+
T Consensus 284 ~l~~~G~~ialDDfG~g~ssl~~L--------------~~l~~d~iKiD~~~v~~~~~~~~~~~~v~~i~~~a~~l~~~v 349 (400)
T 3sy8_A 284 RLWIMGCGLAMDDFGAGYSSLDRL--------------CEFPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISL 349 (400)
T ss_dssp HHHHHTCEEEEEEECSCSGGGGSS--------------SSCCCSEEEECTHHHHHHHHCTTHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHCCCEEEEECCCCchhhHHHH--------------HhCCCCEEEECHHHHhhhhcChhHHHHHHHHHHHHHHcCCeE
Confidence 3556677654 355555455554 24578999888533 12334455554432111113343
Q ss_pred EEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHHHHHHhh
Q 042079 112 VVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 112 i~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l~~~~~~ 150 (153)
| .-+-.+.+....+.+.|++ + |+.||...+++...+.+
T Consensus 350 v-aEGVEt~~~~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~ 391 (400)
T 3sy8_A 350 V-VEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCSG 391 (400)
T ss_dssp E-ECCCCCHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred E-EecCCcHHHHHHHHHcCCCEEEcCeecCcCCHHHHHHHHHh
Confidence 3 4444567777777888874 4 48899999998776543
No 321
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=37.62 E-value=66 Score=23.95 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc-cCCC
Q 042079 91 MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM-LKPL 139 (153)
Q Consensus 91 ~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l-~KP~ 139 (153)
....+.++.+++.. .++|+|...+-.+.+++.+++..||+.+. -.|+
T Consensus 236 ~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~ 283 (349)
T 1p0k_A 236 ISTAASLAEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMAGHF 283 (349)
T ss_dssp CCHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred ccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 45677777777632 47899988888889999999999998863 3343
No 322
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=37.62 E-value=63 Score=23.52 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+++++++++.. ..++|||....-.+.+.+.+++..||+..
T Consensus 229 ~~~i~~v~~~~-~~~ipvi~~GGI~~~~da~~~l~~GAd~V 268 (311)
T 1jub_A 229 LANVRAFYTRL-KPEIQIIGTGGIETGQDAFEHLLCGATML 268 (311)
T ss_dssp HHHHHHHHTTS-CTTSEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhc-CCCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 67778887642 13789998888888999999999998765
No 323
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=37.59 E-value=23 Score=17.50 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=15.1
Q ss_pred ccCCCChhHHHHHHhhh
Q 042079 135 MLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 135 l~KP~~~~~l~~~~~~~ 151 (153)
..+|+++++|+.++.+|
T Consensus 18 Y~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 18 YFIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSSCCCHHHHHHHHHTC
T ss_pred ccCcCCHHHHHHHHHHc
Confidence 57899999999999876
No 324
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=37.53 E-value=63 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+++++++++.. ..++|||....-.+.+++.+++..||+..
T Consensus 262 ~~~v~~i~~~~-~~~ipIIg~GGI~s~~da~~~l~aGAd~V 301 (345)
T 3oix_A 262 LANVHAFYKRL-NPSIQIIGTGGVXTGRDAFEHILCGASMV 301 (345)
T ss_dssp HHHHHHHHTTS-CTTSEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHc-CCCCcEEEECCCCChHHHHHHHHhCCCEE
Confidence 57788888643 13689999988889999999999999864
No 325
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=37.48 E-value=87 Score=20.63 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=32.3
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc-----------cCCCChhHHHHHHhhh
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM-----------LKPLKPSDVKKLTGHL 151 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l-----------~KP~~~~~l~~~~~~~ 151 (153)
...++++.|++. .+++.++|+.............|...|+ .|| +++-+..++.++
T Consensus 88 g~~~~l~~L~~~----g~~~~i~tn~~~~~~~~~l~~~~l~~~fd~~~~~~~~~~~KP-~p~~~~~a~~~l 153 (216)
T 3kbb_A 88 GVREALEFVKSK----RIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKNGKP-DPEIYLLVLERL 153 (216)
T ss_dssp THHHHHHHHHHT----TCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGSSSCTT-STHHHHHHHHHH
T ss_pred cHHHHHHHHHHc----CCCcccccCCcHHHHHHHHHhcCCCccccccccccccCCCcc-cHHHHHHHHHhh
Confidence 456778888763 4688888876444433334456665553 466 445555555543
No 326
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=37.43 E-value=1.1e+02 Score=21.69 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=39.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
.++|-+|. .......++++++++.. ..+|+++=-+-.+.+.+.+++ .||+..+.-
T Consensus 154 ~~~VYld~-sG~~~~~~~i~~i~~~~--~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVG 208 (228)
T 3vzx_A 154 LPIFYLEY-SGVLGDIEAVKKTKAVL--ETSTLFYGGGIKDAETAKQYA-EHADVIVVG 208 (228)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHHC--SSSEEEEESSCCSHHHHHHHH-TTCSEEEEC
T ss_pred CCEEEecC-CCCcCCHHHHHHHHHhc--CCCCEEEeCCCCCHHHHHHHH-hCCCEEEEC
Confidence 67888887 33333588999998753 257888666667788887777 799887554
No 327
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.39 E-value=70 Score=19.50 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=24.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEF 59 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~ 59 (153)
..|+|.|.+....+....-.++.|+++..+.+..+.-..
T Consensus 78 vliiiydqdqnrleefsrevrrrgfevrtvtspddfkks 116 (134)
T 2l69_A 78 VLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKS 116 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHH
T ss_pred EEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHH
Confidence 345666666666666666666677777777776664443
No 328
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=37.19 E-value=72 Score=23.19 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=55.5
Q ss_pred HHHHhcCcEEEE--ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC----CC-CCHHHHHHHHHhccCCCCCc
Q 042079 38 NLLKNSACKVTT--AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM----PG-MTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 38 ~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~----~~-~~g~~~~~~lr~~~~~~~~p 110 (153)
..|+..|+.+.. +.++...+..+. .-++|.|=+|-.+ .. .....+++.+-.....-.+.
T Consensus 170 ~~Lr~~G~~ialDDFGtG~ssl~~L~--------------~l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~ 235 (294)
T 2r6o_A 170 DALRARGVRLALDDFGTGYSSLSYLS--------------QLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGME 235 (294)
T ss_dssp HHHHHHTCEEEEEEETSSCBCHHHHH--------------HSCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCCEEEEECCCCCchhHHHHH--------------hCCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCE
Confidence 345567876543 444443344442 2368899888432 21 12344555443211112344
Q ss_pred EEEEeCCCChhhHHHHHHhcCcc----cccCCCChhHHHHHHhh
Q 042079 111 VVVVSSENIPTRINECLEEGAQM----FMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~~ga~~----~l~KP~~~~~l~~~~~~ 150 (153)
+| .-+-.+.+....+.+.|++- |+.||...+++...+.+
T Consensus 236 vv-AEGVEt~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 236 VV-AEGIETAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp EE-ECCCCSHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred EE-EecCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 43 45555677777788899853 58899999998876654
No 329
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=36.94 E-value=89 Score=25.13 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHH-hcCccc------ccCCCChhHHHHHHhh
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLE-EGAQMF------MLKPLKPSDVKKLTGH 150 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~-~ga~~~------l~KP~~~~~l~~~~~~ 150 (153)
.+++++.+++. ..+|+|.-..-.+.+++.++++ .|+++. ...|++..++++.+..
T Consensus 484 d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~ 545 (555)
T 1jvn_A 484 DLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 545 (555)
T ss_dssp CHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 37888998874 3689987777778899999988 688764 5568999998876543
No 330
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=36.83 E-value=1.1e+02 Score=21.53 Aligned_cols=18 Identities=6% Similarity=-0.073 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCcEEEEec
Q 042079 34 KIVENLLKNSACKVTTAE 51 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~~~~ 51 (153)
..+...+++.||.+..+.
T Consensus 30 ~gi~~~a~~~g~~~~~~~ 47 (294)
T 3qk7_A 30 SWIGIELGKRGLDLLLIP 47 (294)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 344455666777665543
No 331
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=36.65 E-value=1.2e+02 Score=22.19 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=43.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc--C---cEE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS--A---CKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMT 92 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~--~---~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~ 92 (153)
+..++..+|-++...+..++.+... + -.+ ....+..+.+... ..+||+|++|...|...
T Consensus 139 ~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---------------~~~fDvIi~d~~~p~~~ 203 (321)
T 2pt6_A 139 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---------------TNTYDVIIVDSSDPIGP 203 (321)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---------------CSCEEEEEEECCCSSSG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc---------------CCCceEEEECCcCCCCc
Confidence 4568999999999888888776541 1 123 2445555443322 34699999997544211
Q ss_pred -----HHHHHHHHHh
Q 042079 93 -----GYELLKKIKE 102 (153)
Q Consensus 93 -----g~~~~~~lr~ 102 (153)
..++++.+++
T Consensus 204 ~~~l~~~~~l~~~~~ 218 (321)
T 2pt6_A 204 AETLFNQNFYEKIYN 218 (321)
T ss_dssp GGGGSSHHHHHHHHH
T ss_pred chhhhHHHHHHHHHH
Confidence 1577777765
No 332
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=36.31 E-value=1.1e+02 Score=21.44 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=35.5
Q ss_pred cccEEEEeCCC--CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCM--PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~--~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..|+|++|... ....-.++++.+++. .+++ +..-.+.+...++.+.|++.+
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~----g~~v--~~~v~t~eea~~a~~~Gad~I 153 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLH----GLLA--MADCSTVNEGISCHQKGIEFI 153 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHT----TCEE--EEECSSHHHHHHHHHTTCSEE
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHC----CCEE--EEecCCHHHHHHHHhCCCCEE
Confidence 57999999864 234556788888763 3333 344457788888999999866
No 333
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=36.28 E-value=1.2e+02 Score=21.96 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC-CCCCC-HHHHHHHHHhccCCC
Q 042079 31 VDRKIVENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC-MPGMT-GYELLKKIKESSVMK 107 (153)
Q Consensus 31 ~~~~~l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~-~~~~~-g~~~~~~lr~~~~~~ 107 (153)
.....+..+-...|.+ +..+++..|.-..+. ...++|=++-. +.++. -++...+|...-+ .
T Consensus 140 ~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~---------------~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip-~ 203 (258)
T 4a29_A 140 RELESLLEYARSYGMEPLILINDENDLDIALR---------------IGARFIGIMSRDFETGEINKENQRKLISMIP-S 203 (258)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH---------------TTCSEEEECSBCTTTCCBCHHHHHHHHTTSC-T
T ss_pred HHHHHHHHHHHHHhHHHHHhcchHHHHHHHhc---------------CCCcEEEEeCCCccccccCHHHHHHHHhhCC-C
Confidence 3344455555567765 557899888766552 24678866532 23222 2444555655332 3
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
.+.+|.-++-.+.+++....+.|++.||.-
T Consensus 204 ~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 204 NVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 566666677778999999999999999763
No 334
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.14 E-value=49 Score=25.79 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=41.4
Q ss_pred cccEEEEeC--CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 78 KVNLVITDY--CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 78 ~~dlii~D~--~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
...++|+|- .++....-.+++.+.+ ..+.+|..|..........++..-+.-|..+|++.+++..++.+.
T Consensus 106 ~~~iLfIDEI~~l~~~~q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKSQQDAFLPHIED----GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp CCEEEEEETTTCC------CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred CCcEEEEeChhhhCHHHHHHHHHHHhc----CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHH
Confidence 467889884 2222222234444443 245565555544444445666666777888999999999888774
No 335
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=36.03 E-value=86 Score=20.12 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..+.. +. ...+..+.+... ...||+|+++.-.......++
T Consensus 54 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---------------~~~fD~i~~~~~~~~~~~~~~ 118 (177)
T 2esr_A 54 MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL---------------TGRFDLVFLDPPYAKETIVAT 118 (177)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB---------------CSCEEEEEECCSSHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh---------------cCCCCEEEECCCCCcchHHHH
Confidence 357999999999888888877766542 33 344554433332 245999999843211223445
Q ss_pred HHHHH
Q 042079 97 LKKIK 101 (153)
Q Consensus 97 ~~~lr 101 (153)
++.+.
T Consensus 119 ~~~l~ 123 (177)
T 2esr_A 119 IEALA 123 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 336
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=36.03 E-value=46 Score=24.34 Aligned_cols=25 Identities=4% Similarity=0.052 Sum_probs=16.6
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHh
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKE 102 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~ 102 (153)
..++|+||+|+... +|...++..|.
T Consensus 137 ~~~~DvVLSDMAPn--SG~~~vD~~Rs 161 (269)
T 2px2_A 137 SEISDTLLCDIGES--SPSAEIEEQRT 161 (269)
T ss_dssp CCCCSEEEECCCCC--CSCHHHHHHHH
T ss_pred CCCCCEEEeCCCCC--CCccHHHHHHH
Confidence 35799999998653 55555555543
No 337
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=36.00 E-value=1.4e+02 Score=22.60 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC----C-CCCCHHHHHHHHHhcc
Q 042079 32 DRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC----M-PGMTGYELLKKIKESS 104 (153)
Q Consensus 32 ~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~----~-~~~~g~~~~~~lr~~~ 104 (153)
..+.++.+-+..+ +.+..+.+.+++..... ..+|.|++.-+ + .....++++..+++.-
T Consensus 205 ~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~---------------~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av 269 (352)
T 3sgz_A 205 CWNDLSLLQSITRLPIILKGILTKEDAELAMK---------------HNVQGIVVSNHGGRQLDEVSASIDALREVVAAV 269 (352)
T ss_dssp CHHHHHHHHHHCCSCEEEEEECSHHHHHHHHH---------------TTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEecCcHHHHHHHHH---------------cCCCEEEEeCCCCCccCCCccHHHHHHHHHHHh
Confidence 3445555554433 44566777777766552 45888887431 1 1234577887776532
Q ss_pred CCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCC
Q 042079 105 VMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPL 139 (153)
Q Consensus 105 ~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~ 139 (153)
..++|||.-.+-.+..++.+++..||+.. +-.|+
T Consensus 270 -~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~ 304 (352)
T 3sgz_A 270 -KGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPI 304 (352)
T ss_dssp -TTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred -CCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 23689998888888999999999999985 34454
No 338
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=35.83 E-value=79 Score=23.63 Aligned_cols=43 Identities=9% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEEe--CCCChhhHHHHHHhcCcccc
Q 042079 91 MTGYELLKKIKESSVMKEVPVVVVS--SENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 91 ~~g~~~~~~lr~~~~~~~~pii~~t--~~~~~~~~~~a~~~ga~~~l 135 (153)
.+-+++++.+++.. +++++.+++ .......+.++.+.|++.+.
T Consensus 67 ~~~~e~l~~i~~~~--~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~ 111 (345)
T 1nvm_A 67 HTDLEYIEAVAGEI--SHAQIATLLLPGIGSVHDLKNAYQAGARVVR 111 (345)
T ss_dssp SCHHHHHHHHHTTC--SSSEEEEEECBTTBCHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHhhC--CCCEEEEEecCCcccHHHHHHHHhCCcCEEE
Confidence 56788888887642 577887774 22356777888888988753
No 339
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=35.54 E-value=1.3e+02 Score=22.13 Aligned_cols=63 Identities=6% Similarity=0.062 Sum_probs=40.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCc---------------cc--ccCCCCh
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQ---------------MF--MLKPLKP 141 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~---------------~~--l~KP~~~ 141 (153)
.|+.++= +....-|+.+++.+. ..+|+|. +.. ....+....|.. ++ +..|-+.
T Consensus 274 adv~v~p-S~~E~~~~~~lEAma-----~G~PvI~-s~~---~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~ 343 (413)
T 3oy2_A 274 CDVIVNC-SSGEGFGLCSAEGAV-----LGKPLII-SAV---GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDV 343 (413)
T ss_dssp CSEEEEC-CSCCSSCHHHHHHHT-----TTCCEEE-ECC---HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCH
T ss_pred CCEEEeC-CCcCCCCcHHHHHHH-----cCCCEEE-cCC---CChHHHHccCcccccccccccccccccCcceeeCCCCH
Confidence 5777762 223344666777664 3568874 322 234555666666 78 8899999
Q ss_pred hHHHHHHhhhc
Q 042079 142 SDVKKLTGHLI 152 (153)
Q Consensus 142 ~~l~~~~~~~~ 152 (153)
+++.+.+ +++
T Consensus 344 ~~la~~i-~l~ 353 (413)
T 3oy2_A 344 DDLVEAF-TFF 353 (413)
T ss_dssp HHHHHHH-HHT
T ss_pred HHHHHHH-HHh
Confidence 9999888 764
No 340
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=35.46 E-value=71 Score=24.28 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+++++.+++.. ..++|||...+-.+.+++.+++..||+..
T Consensus 285 ~~~v~~i~~~v-~~~ipvI~~GGI~s~~da~~~l~~GAd~V 324 (367)
T 3zwt_A 285 TQTIREMYALT-QGRVPIIGVGGVSSGQDALEKIRAGASLV 324 (367)
T ss_dssp HHHHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHc-CCCceEEEECCCCCHHHHHHHHHcCCCEE
Confidence 47788888753 13789999988889999999999999765
No 341
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=35.44 E-value=45 Score=22.79 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=25.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
.+.++|||.....-....+...|.+.|+.|....
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~ 52 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMV 52 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence 4568999999988888777777777788876543
No 342
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=35.35 E-value=1.5e+02 Score=23.05 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=8.5
Q ss_pred CcccEEEEeC
Q 042079 77 TKVNLVITDY 86 (153)
Q Consensus 77 ~~~dlii~D~ 86 (153)
..+|+||+|.
T Consensus 182 ~~~D~VIIDT 191 (433)
T 2xxa_A 182 KFYDVLLVDT 191 (433)
T ss_dssp TTCSEEEEEC
T ss_pred CCCCEEEEEC
Confidence 3589999998
No 343
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=35.19 E-value=1.1e+02 Score=21.05 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=38.0
Q ss_pred cccEEEEeCCCCCCC-------HHHHHHHHHhccC--CCCCcEEEEeCCCChhhHHHHHHhcCccc-----ccCCCChhH
Q 042079 78 KVNLVITDYCMPGMT-------GYELLKKIKESSV--MKEVPVVVVSSENIPTRINECLEEGAQMF-----MLKPLKPSD 143 (153)
Q Consensus 78 ~~dlii~D~~~~~~~-------g~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~a~~~ga~~~-----l~KP~~~~~ 143 (153)
..|.|+++...|+.. +++.++++|+... ..+.|+++..+ -+.+...++.+.|++.+ +.+.-++.+
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GG-I~~~n~~~~~~aGad~vvvgSaI~~a~dp~~ 218 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGG-VGPKNAYKVIEAGANALVAGSAVFGAPDYAE 218 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESS-CCTTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHcCCCEEEEChhhhCCCCHHH
Confidence 468888776555332 3455566664320 01567664444 45677777888898775 444444444
Q ss_pred H
Q 042079 144 V 144 (153)
Q Consensus 144 l 144 (153)
-
T Consensus 219 a 219 (230)
T 1rpx_A 219 A 219 (230)
T ss_dssp H
T ss_pred H
Confidence 3
No 344
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=35.17 E-value=95 Score=24.53 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=40.2
Q ss_pred CcccEEEEeCCCCCCC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..+|.|.++....... ..++++++++.. +.+|+++-. -.+.+.+..+.+.|++.+..
T Consensus 266 aG~d~v~i~~~~G~~~~~~~~i~~i~~~~--~~~pvi~~~-v~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQIAMVHYIKQKY--PHLQVIGGN-VVTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp TTCSEEEECCSCCCSHHHHHHHHHHHHHC--TTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEeeccCCcchhHHHHHHHHHHhC--CCCceEecc-cchHHHHHHHHHcCCCEEEE
Confidence 3589999987664433 358899998754 467887522 24677788899999987644
No 345
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=35.08 E-value=1.5e+02 Score=22.53 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=40.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc---------CcccccCCCChhHHHHHHh
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG---------AQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g---------a~~~l~KP~~~~~l~~~~~ 149 (153)
.|+.++=-. ...-|+.+++.+.- .+|+|.. .. ....+....| ..+++..|-+.+++.+.+.
T Consensus 367 adv~v~pS~-~E~~g~~~lEAma~-----G~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~ 436 (485)
T 2qzs_A 367 ADVILVPSR-FEPCGLTQLYGLKY-----GTLPLVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIR 436 (485)
T ss_dssp CSEEEECCS-CCSSCSHHHHHHHH-----TCEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHH
T ss_pred CCEEEECCc-cCCCcHHHHHHHHC-----CCCEEEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHH
Confidence 466655322 23345566666653 4677643 21 3344555666 7889999999999988877
Q ss_pred hhc
Q 042079 150 HLI 152 (153)
Q Consensus 150 ~~~ 152 (153)
+++
T Consensus 437 ~ll 439 (485)
T 2qzs_A 437 RAF 439 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 346
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.88 E-value=63 Score=23.60 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=40.7
Q ss_pred cccEEEEeCCCCCCCH---HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 78 KVNLVITDYCMPGMTG---YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g---~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.++|+|--.. ++. -.+++.+.+.. ....+|+++.... .....+..-+..+-.+|++.+++.+.+.+.
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~--~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS--PIIAPIKSQCLLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC--SSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH--HHHHHHHhhceEEecCCcCHHHHHHHHHHH
Confidence 578999985222 332 23444455422 3556666665432 223345555566777899999988877653
No 347
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=34.71 E-value=16 Score=25.70 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=41.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..+|..+|-++......+..++..|. .+. ...+..+.+..+... .....||+|++|... .+-..+
T Consensus 85 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~----------~~~~~fD~V~~d~~~--~~~~~~ 152 (242)
T 3r3h_A 85 DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNE----------GGEHQFDFIFIDADK--TNYLNY 152 (242)
T ss_dssp TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHH----------HCSSCEEEEEEESCG--GGHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhc----------cCCCCEeEEEEcCCh--HHhHHH
Confidence 56899999988777777777766553 233 345555554433100 002469999999752 233445
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 153 l~~~~~ 158 (242)
T 3r3h_A 153 YELALK 158 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 348
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=34.37 E-value=1.5e+02 Score=22.42 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC----C-CCCCHHHHHHHHHhcc
Q 042079 32 DRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC----M-PGMTGYELLKKIKESS 104 (153)
Q Consensus 32 ~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~----~-~~~~g~~~~~~lr~~~ 104 (153)
..+.++.+-+..+ +.+..+.+.+++..... ..+|.|.+.-+ + .....++.+.++++.-
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~---------------~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v 281 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIK---------------RGASGIWVSNHGARQLYEAPGSFDTLPAIAERV 281 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHH---------------TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH---------------cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh
Confidence 3444555544433 44555677777655542 35788887431 1 1234577888887642
Q ss_pred CCCCCcEEEEeCCCChhhHHHHHHhcCcccc-cCCC
Q 042079 105 VMKEVPVVVVSSENIPTRINECLEEGAQMFM-LKPL 139 (153)
Q Consensus 105 ~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l-~KP~ 139 (153)
. .++|||.-.+-.+..++.+++..||+... -+|+
T Consensus 282 ~-~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~ 316 (368)
T 2nli_A 282 N-KRVPIVFDSGVRRGEHVAKALASGADVVALGRPV 316 (368)
T ss_dssp T-TSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred C-CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 1 36899988888889999999999998863 4454
No 349
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=34.32 E-value=1.4e+02 Score=22.13 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=39.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 79 VNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 79 ~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.|++++-. ....-|..+++.+.. .+|+|... . ....+.+..|..+++..|-+.+++.+.+.+++
T Consensus 326 adv~v~ps-~~e~~~~~~~Eama~-----G~PvI~~~-~---~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~ 389 (438)
T 3c48_A 326 ADIVAVPS-FNESFGLVAMEAQAS-----GTPVIAAR-V---GGLPIAVAEGETGLLVDGHSPHAWADALATLL 389 (438)
T ss_dssp CSEEEECC-SCCSSCHHHHHHHHT-----TCCEEEES-C---TTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH
T ss_pred CCEEEECc-cccCCchHHHHHHHc-----CCCEEecC-C---CChhHHhhCCCcEEECCCCCHHHHHHHHHHHH
Confidence 46665432 223345667776653 56876533 2 22334555677789999999999988877653
No 350
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=34.19 E-value=60 Score=21.82 Aligned_cols=39 Identities=5% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCcccEEEEeCCCCCC-CHH---HHHHHHHhccCCCCCcEEEEe
Q 042079 76 GTKVNLVITDYCMPGM-TGY---ELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~-~g~---~~~~~lr~~~~~~~~pii~~t 115 (153)
...||+|++...+... +-. .+++.+++.- .+...+++.+
T Consensus 99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~ 141 (235)
T 3sm3_A 99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVL-KPGAYLYLVE 141 (235)
T ss_dssp TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHE-EEEEEEEEEE
T ss_pred CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHc-CCCeEEEEEE
Confidence 3579999997655544 223 5677665432 1334444443
No 351
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=34.13 E-value=37 Score=23.19 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=20.6
Q ss_pred cccEEEEeC-CCCCCCHHHHHHHHHhccCCCCCcEEEEe
Q 042079 78 KVNLVITDY-CMPGMTGYELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 78 ~~dlii~D~-~~~~~~g~~~~~~lr~~~~~~~~pii~~t 115 (153)
.+|+|++|- +.-+.+-.++++.+... .+++|+..
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~~----~~~Vi~~G 115 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAES----GRRVICAG 115 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHHT----TCEEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEe
Confidence 589999994 22222346666666542 56777654
No 352
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=33.99 E-value=46 Score=24.39 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHhh
Q 042079 107 KEVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTGH 150 (153)
Q Consensus 107 ~~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~~ 150 (153)
+.+=+|+++.+. ..+...+|++.|.+-++-||+ +.++.++++..
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 118 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKEL 118 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHH
T ss_pred CCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345555555543 356668899999999999995 55677776543
No 353
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=33.92 E-value=1.3e+02 Score=23.64 Aligned_cols=51 Identities=6% Similarity=0.017 Sum_probs=35.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcE-EEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACK-VTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~-v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
.+|..+|-++.....++.-++..|.. +.. ..+..+..... ...||+|++|.
T Consensus 131 g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~---------------~~~FD~Il~Da 183 (456)
T 3m4x_A 131 GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF---------------SGFFDRIVVDA 183 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH---------------TTCEEEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc---------------cccCCEEEECC
Confidence 47899999999988888888877753 433 44544433222 24699999995
No 354
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=33.90 E-value=1.8e+02 Score=23.31 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=42.7
Q ss_pred EEEEecCHHHHHHHhchhhhHHhhhhcccCCCc---ccEEEEeCCCCC---------CCHHHHHHHHHhcc---CCCCCc
Q 042079 46 KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTK---VNLVITDYCMPG---------MTGYELLKKIKESS---VMKEVP 110 (153)
Q Consensus 46 ~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~---~dlii~D~~~~~---------~~g~~~~~~lr~~~---~~~~~p 110 (153)
.-.++++..++..... .. +|.|.+.--.|. .-|++.++++++.. ...++|
T Consensus 111 iG~S~ht~eea~~A~~---------------~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iP 175 (540)
T 3nl6_A 111 IGWSVGFPEEVDELSK---------------MGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCR 175 (540)
T ss_dssp EEEEECSHHHHHHHHH---------------TCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCE
T ss_pred EEEECCCHHHHHHHHH---------------cCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCC
Confidence 3446778888766542 23 799998765543 13577777765431 113689
Q ss_pred EEEEeCCCChhhHHHHHH
Q 042079 111 VVVVSSENIPTRINECLE 128 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~~ 128 (153)
++.+.+- +.+.+.+++.
T Consensus 176 vvAIGGI-~~~ni~~v~~ 192 (540)
T 3nl6_A 176 TVGIGGL-HPDNIERVLY 192 (540)
T ss_dssp EEEESSC-CTTTHHHHHH
T ss_pred EEEEcCC-CHHHHHHHHH
Confidence 9988876 5566777776
No 355
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=33.73 E-value=81 Score=23.87 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=37.9
Q ss_pred CcccEEEEeCCCCCCC-HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMT-GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~-g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..+|+|.+|....... -.+.++++++.. .+|+++ ..-.+.+....+.+.|++....
T Consensus 116 aGad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 116 AGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp TTCSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred cCcCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 3589999887654332 246777777642 567765 2234677888899999987654
No 356
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=33.63 E-value=48 Score=23.13 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++.++.++ . ..+|+++...-.+.+.+.++++.|++..+.
T Consensus 63 ~~~i~~i~-~---~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 63 LPVLEKLS-E---FAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHGG-G---GGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH-h---cCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 66677766 3 368999888888888889999999887643
No 357
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=33.59 E-value=63 Score=23.86 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
++.++.+++.. ..++|||....-.+.+.+.+++..||+..
T Consensus 276 ~~~i~~i~~~~-~~~ipVi~~GGI~~~~da~~~l~~GAd~V 315 (336)
T 1f76_A 276 TEIIRRLSLEL-NGRLPIIGVGGIDSVIAAREKIAAGASLV 315 (336)
T ss_dssp HHHHHHHHHHH-TTSSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 36777777642 13689998888889999999999998765
No 358
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=33.09 E-value=79 Score=21.37 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=22.2
Q ss_pred CcccEEEEeCCCCCCCHH---HHHHHHHhccCCCCCcEEEE
Q 042079 77 TKVNLVITDYCMPGMTGY---ELLKKIKESSVMKEVPVVVV 114 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~---~~~~~lr~~~~~~~~pii~~ 114 (153)
..||+|++...+.-.+.. .+++.+++.- .+...+++.
T Consensus 108 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~ 147 (234)
T 3dtn_A 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSIL-KESGIFINA 147 (234)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred CCceEEEEeCccccCCHHHHHHHHHHHHHhc-CCCcEEEEE
Confidence 579999998766555433 3677776532 133344443
No 359
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=33.05 E-value=1.2e+02 Score=22.92 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCc
Q 042079 31 VDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 31 ~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~p 110 (153)
.-...|..+-++.|..+.+..-..+.++++.. ..+|++ -+...++.-+.+++.+.+. ..|
T Consensus 91 e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~--------------~~v~~~--KI~S~~~~n~~LL~~va~~----gkP 150 (349)
T 2wqp_A 91 EDEIKLKEYVESKGMIFISTLFSRAAALRLQR--------------MDIPAY--KIGSGECNNYPLIKLVASF----GKP 150 (349)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH--------------HTCSCE--EECGGGTTCHHHHHHHHTT----CSC
T ss_pred HHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHh--------------cCCCEE--EECcccccCHHHHHHHHhc----CCe
Confidence 34456667777788877665555666777631 113333 3444556668999998764 469
Q ss_pred EEEEeCCCChhhHHHHH
Q 042079 111 VVVVSSENIPTRINECL 127 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~ 127 (153)
||+=++-.+.++...|.
T Consensus 151 viLstGmat~~Ei~~Av 167 (349)
T 2wqp_A 151 IILSTGMNSIESIKKSV 167 (349)
T ss_dssp EEEECTTCCHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHH
Confidence 99888877766665543
No 360
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=32.89 E-value=1.6e+02 Score=22.45 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-----CCCCHHHHHHHHHhcc
Q 042079 32 DRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM-----PGMTGYELLKKIKESS 104 (153)
Q Consensus 32 ~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~-----~~~~g~~~~~~lr~~~ 104 (153)
..+.++.+-+..+ +.+..+.+.+++..... ..+|.|.+.-.- .....++.+..+++.-
T Consensus 240 ~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~---------------aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av 304 (392)
T 2nzl_A 240 SWEDIKWLRRLTSLPIVAKGILRGDDAREAVK---------------HGLNGILVSNHGARQLDGVPATIDVLPEIVEAV 304 (392)
T ss_dssp CHHHHHHHC--CCSCEEEEEECCHHHHHHHHH---------------TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEecCCHHHHHHHHH---------------cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc
Confidence 3444554444333 34445667777655542 357888884321 1234567777776532
Q ss_pred CCCCCcEEEEeCCCChhhHHHHHHhcCccc-ccCCCCh
Q 042079 105 VMKEVPVVVVSSENIPTRINECLEEGAQMF-MLKPLKP 141 (153)
Q Consensus 105 ~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-l~KP~~~ 141 (153)
..++|||+-.+-.+..++.+++..||+.. +-+|+-.
T Consensus 305 -~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 305 -EGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVW 341 (392)
T ss_dssp -TTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred -CCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence 13689988777788999999999999885 4455433
No 361
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=32.75 E-value=55 Score=21.80 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcEEEEecCH
Q 042079 23 VLAVDDSIVDRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 23 iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
|+|+|....+...+.+.|++.|..+..+...
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT 33 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECC
Confidence 8999988877778889999999887766643
No 362
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=32.62 E-value=78 Score=18.64 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=32.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHh
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFL 60 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l 60 (153)
-+||+.++.......+.+-+..+.+...+.+..+.-..+
T Consensus 4 yvliisndkklieearkmaekanlelrtvktedelkkyl 42 (110)
T 2kpo_A 4 YVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYL 42 (110)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHH
Confidence 478999999888888888888888998998888866555
No 363
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=32.56 E-value=87 Score=20.75 Aligned_cols=70 Identities=17% Similarity=0.337 Sum_probs=36.4
Q ss_pred cccEEEEeCC-CCCCCHH-HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 78 KVNLVITDYC-MPGMTGY-ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 78 ~~dlii~D~~-~~~~~g~-~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
++.++++|-- .-+.... .+++.+... ...+.+|+.+.. . ......+......+-.+|++.+++.+++.+.
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~--~~~~~~i~~t~~-~-~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEP--PEHVKFLLATTD-P-QKLPVTILSRCLQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSC--CTTEEEEEEESC-G-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcC--CCceEEEEEeCC-h-HhCCHHHHHHhhhccCCCCCHHHHHHHHHHH
Confidence 4678888742 1111222 233444332 124445544433 2 2223334444556677899999998887653
No 364
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=32.52 E-value=1.1e+02 Score=20.13 Aligned_cols=67 Identities=7% Similarity=-0.006 Sum_probs=31.8
Q ss_pred CcccEEEEeCCCC-CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 77 TKVNLVITDYCMP-GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 77 ~~~dlii~D~~~~-~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
..||+|++....- ..+-..+++.+++.- .+...+++.+....... +..+........++.+++.+++
T Consensus 93 ~~fD~v~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l 160 (202)
T 2kw5_A 93 DAWEGIVSIFCHLPSSLRQQLYPKVYQGL-KPGGVFILEGFAPEQLQ----YNTGGPKDLDLLPKLETLQSEL 160 (202)
T ss_dssp TTCSEEEEECCCCCHHHHHHHHHHHHTTC-CSSEEEEEEEECTTTGG----GTSCCSSSGGGCCCHHHHHHHC
T ss_pred CCccEEEEEhhcCCHHHHHHHHHHHHHhc-CCCcEEEEEEecccccc----CCCCCCCcceeecCHHHHHHHh
Confidence 4699999854322 123456667776532 23444444443222111 1112111122356777777654
No 365
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=32.18 E-value=1.8e+02 Score=22.70 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=37.1
Q ss_pred cccEEEEeCCCC-----------CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 78 KVNLVITDYCMP-----------GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 78 ~~dlii~D~~~~-----------~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.+|.|.+...-. +....+.+..+.+......+|+|.-..-.+...+.+++..||+...
T Consensus 299 G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~ 367 (494)
T 1vrd_A 299 GADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVM 367 (494)
T ss_dssp TCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 478888743211 1233444555443211136899988787789999999999998753
No 366
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=32.09 E-value=1.1e+02 Score=23.61 Aligned_cols=77 Identities=9% Similarity=0.052 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCc
Q 042079 31 VDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVP 110 (153)
Q Consensus 31 ~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~p 110 (153)
.-...|..+-++.|..+.+..-..+.++++. ...+|++ -+...++.-+.+++.+.+. ..|
T Consensus 101 e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~--------------~~~vd~~--KIgS~~~~N~pLL~~va~~----gKP 160 (385)
T 1vli_A 101 EWILPLLDYCREKQVIFLSTVCDEGSADLLQ--------------STSPSAF--KIASYEINHLPLLKYVARL----NRP 160 (385)
T ss_dssp GGHHHHHHHHHHTTCEEECBCCSHHHHHHHH--------------TTCCSCE--EECGGGTTCHHHHHHHHTT----CSC
T ss_pred HHHHHHHHHHHHcCCcEEEccCCHHHHHHHH--------------hcCCCEE--EECcccccCHHHHHHHHhc----CCe
Confidence 4456677777788887776666666778773 1223433 3444556668999998764 469
Q ss_pred EEEEeCCCChhhHHHHH
Q 042079 111 VVVVSSENIPTRINECL 127 (153)
Q Consensus 111 ii~~t~~~~~~~~~~a~ 127 (153)
||+=|+-.+.++...|.
T Consensus 161 ViLStGmaTl~Ei~~Av 177 (385)
T 1vli_A 161 MIFSTAGAEISDVHEAW 177 (385)
T ss_dssp EEEECTTCCHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHH
Confidence 99888887766665553
No 367
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=31.94 E-value=95 Score=19.39 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=45.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKI 100 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~l 100 (153)
+++.++.| +..... ++-.|+++..+.+.+++.+.+.... .. .+.+|++.-..-..-. +.+++.
T Consensus 3 mKiaVIGD-~Dtv~G----FrLaGie~~~v~~~ee~~~~~~~l~----------~~-digIIlIte~ia~~i~-~~i~~~ 65 (115)
T 3aon_B 3 YKIGVVGD-KDSVSP----FRLFGFDVQHGTTKTEIRKTIDEMA----------KN-EYGVIYITEQCANLVP-ETIERY 65 (115)
T ss_dssp EEEEEESC-HHHHGG----GGGGTCEEECCCSHHHHHHHHHHHH----------HT-TEEEEEEEHHHHTTCH-HHHHHH
T ss_pred eEEEEEEC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHH----------hc-CceEEEEeHHHHHHhH-HHHHHH
Confidence 57888888 433321 3446888888888888777664322 12 6889998865544433 344445
Q ss_pred HhccCCCCCcEEEEeCC
Q 042079 101 KESSVMKEVPVVVVSSE 117 (153)
Q Consensus 101 r~~~~~~~~pii~~t~~ 117 (153)
++ ...|+|+..+.
T Consensus 66 ~~----~~~P~IveIPs 78 (115)
T 3aon_B 66 KG----QLTPAIILIPS 78 (115)
T ss_dssp HT----SSSCEEEEECB
T ss_pred hC----CCCCEEEEECC
Confidence 43 23577666543
No 368
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=31.83 E-value=1.4e+02 Score=21.42 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=32.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChh----hHHHHHHhcCcccccCCCC--hhHHHHHHhhh
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPT----RINECLEEGAQMFMLKPLK--PSDVKKLTGHL 151 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~----~~~~a~~~ga~~~l~KP~~--~~~l~~~~~~~ 151 (153)
+..+++.+.- .+|+|.......+. ......+.|. +++..|-+ .+++.+.+.++
T Consensus 264 ~~~~~EAma~-----G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAAA-----GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHHH-----TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHHh-----CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 6777777664 56887654332111 1234556777 88888855 88888777643
No 369
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=31.68 E-value=1.4e+02 Score=21.35 Aligned_cols=87 Identities=7% Similarity=0.026 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCcEE-EEecCHHHHHHHhchhhhHHhhhhcccCCC-cccEEEEeCCC-CCC-CHHHHHHHHHhccCCCC
Q 042079 33 RKIVENLLKNSACKV-TTAENGMRALEFLGLVDEQEQQNNLNSNGT-KVNLVITDYCM-PGM-TGYELLKKIKESSVMKE 108 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-~~dlii~D~~~-~~~-~g~~~~~~lr~~~~~~~ 108 (153)
...+....++.|..+ ..+++..|+...+ .- .+|+|-++... .+. ..++...++.+.-. ..
T Consensus 139 l~~l~~~a~~lGl~~lvEv~~~eE~~~A~---------------~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip-~~ 202 (251)
T 1i4n_A 139 IKEIYEAAEELGMDSLVEVHSREDLEKVF---------------SVIRPKIIGINTRDLDTFEIKKNVLWELLPLVP-DD 202 (251)
T ss_dssp HHHHHHHHHTTTCEEEEEECSHHHHHHHH---------------TTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSC-TT
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHH---------------hcCCCCEEEEeCcccccCCCCHHHHHHHHHhCC-CC
Confidence 334444455678764 4688888876665 23 57888776422 211 11444455554321 34
Q ss_pred CcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 109 VPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 109 ~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
+++|.-++-.+++...++.+. ++.+|.
T Consensus 203 ~~vIaEsGI~t~edv~~~~~~-a~avLV 229 (251)
T 1i4n_A 203 TVVVAESGIKDPRELKDLRGK-VNAVLV 229 (251)
T ss_dssp SEEEEESCCCCGGGHHHHTTT-CSEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHh-CCEEEE
Confidence 566666666678999999888 988854
No 370
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=31.64 E-value=1.3e+02 Score=21.02 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=43.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-CHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-TGYE 95 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-~g~~ 95 (153)
..++..+|-++......+..+...+. .+. ...+..+. ... ....||+|++...+.-. +-..
T Consensus 90 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--------------~~~~fD~v~~~~~l~~~~~~~~ 154 (285)
T 4htf_A 90 GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDV-ASH--------------LETPVDLILFHAVLEWVADPRS 154 (285)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGT-GGG--------------CSSCEEEEEEESCGGGCSCHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHh-hhh--------------cCCCceEEEECchhhcccCHHH
Confidence 35677888888777777776665443 122 22222211 101 23579999998655422 4456
Q ss_pred HHHHHHhccCCCCCcEEEEe
Q 042079 96 LLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t 115 (153)
+++.+++.- .+...+++..
T Consensus 155 ~l~~~~~~L-kpgG~l~~~~ 173 (285)
T 4htf_A 155 VLQTLWSVL-RPGGVLSLMF 173 (285)
T ss_dssp HHHHHHHTE-EEEEEEEEEE
T ss_pred HHHHHHHHc-CCCeEEEEEE
Confidence 777776532 2333444443
No 371
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=31.39 E-value=80 Score=24.87 Aligned_cols=51 Identities=14% Similarity=0.013 Sum_probs=35.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
.+|..+|-++.....++.-++..|..+.. ..+..+..... ...||+|++|.
T Consensus 127 g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~---------------~~~FD~Il~D~ 178 (464)
T 3m6w_A 127 GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF---------------GTYFHRVLLDA 178 (464)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH---------------CSCEEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc---------------cccCCEEEECC
Confidence 57999999999999888888877765333 34444432222 24699999985
No 372
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=31.39 E-value=76 Score=23.25 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCcEEEEeCCC--ChhhHHHHHHhcCcccccCC--CChhHHHHHHh
Q 042079 108 EVPVVVVSSEN--IPTRINECLEEGAQMFMLKP--LKPSDVKKLTG 149 (153)
Q Consensus 108 ~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP--~~~~~l~~~~~ 149 (153)
.+=+|+++.+. ..+...+|++.|.+-|+-|| .+.++.++++.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 118 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAV 118 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHH
Confidence 45555555543 35667889999999999999 56667776654
No 373
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=31.24 E-value=1.3e+02 Score=20.84 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCcEEEEecCH---HHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCC
Q 042079 33 RKIVENLLKNSACKVTTAENG---MRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEV 109 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~ 109 (153)
...+...+++.||.+..+... ......+... ....+|-||+-...+. ...+.++.+.+. .+
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiI~~~~~~~-~~~~~~~~~~~~----~i 90 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEF-----------VHLKVDAIFITTLDDV-YIGSAIEEAKKA----GI 90 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH-----------HHTTCSEEEEECSCTT-TTHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-----------HHcCCCEEEEecCChH-HHHHHHHHHHHc----CC
Confidence 344556677789987765432 2222222111 1246888887543222 223566777653 57
Q ss_pred cEEEEeCC
Q 042079 110 PVVVVSSE 117 (153)
Q Consensus 110 pii~~t~~ 117 (153)
|+|++...
T Consensus 91 PvV~~~~~ 98 (293)
T 3l6u_A 91 PVFAIDRM 98 (293)
T ss_dssp CEEEESSC
T ss_pred CEEEecCC
Confidence 88877543
No 374
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=31.23 E-value=1.5e+02 Score=21.64 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=36.3
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..+|+|.+....| .++++++++. .++++... .+......+.+.|+|.++.
T Consensus 95 ~g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 95 AGIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp TTCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEE
Confidence 4588999887655 5778888863 46776544 3566777888999988776
No 375
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=31.18 E-value=1.1e+02 Score=19.93 Aligned_cols=82 Identities=13% Similarity=0.057 Sum_probs=47.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc-EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC-KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYE 95 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~-~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~ 95 (153)
..++..+|-++......+..++..+. .+. ...+..+..... ....||+|++|.-... .+-..
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--------------~~~~fD~i~~~~p~~~~~~~~~~ 132 (189)
T 3p9n_A 67 AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG--------------TTSPVDLVLADPPYNVDSADVDA 132 (189)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC--------------CSSCCSEEEECCCTTSCHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc--------------cCCCccEEEECCCCCcchhhHHH
Confidence 35799999999988888887776553 232 344544443322 1357999999854332 22345
Q ss_pred HHHHHHhc-cCCCCCcEEEEe
Q 042079 96 LLKKIKES-SVMKEVPVVVVS 115 (153)
Q Consensus 96 ~~~~lr~~-~~~~~~pii~~t 115 (153)
+++.+.+. ...+...+++-+
T Consensus 133 ~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 133 ILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp HHHHHHHSSSCCTTCEEEEEE
T ss_pred HHHHHHhcCccCCCeEEEEEe
Confidence 66666541 122444444443
No 376
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=31.16 E-value=1.3e+02 Score=20.90 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=8.2
Q ss_pred CeEEEEeCCH
Q 042079 21 PHVLAVDDSI 30 (153)
Q Consensus 21 ~~iLiidd~~ 30 (153)
++||||..++
T Consensus 26 ~kiLiI~gsp 35 (218)
T 3rpe_A 26 SNVLIINAMK 35 (218)
T ss_dssp CCEEEEECCC
T ss_pred cceEEEEeCC
Confidence 5799998877
No 377
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=31.15 E-value=1.3e+02 Score=20.59 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=44.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHH-HhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALE-FLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGY 94 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~-~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~ 94 (153)
+..++..+|-++......+..++..+. .+. ...+..+.+. .+ ...||+|++|...+ .-.
T Consensus 94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---------------~~~fD~V~~~~~~~--~~~ 156 (232)
T 3ntv_A 94 DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---------------DKVYDMIFIDAAKA--QSK 156 (232)
T ss_dssp TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---------------TSCEEEEEEETTSS--SHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---------------cCCccEEEEcCcHH--HHH
Confidence 357899999999999888888877664 232 3444444333 32 24699999996533 345
Q ss_pred HHHHHHHh
Q 042079 95 ELLKKIKE 102 (153)
Q Consensus 95 ~~~~~lr~ 102 (153)
.+++.+.+
T Consensus 157 ~~l~~~~~ 164 (232)
T 3ntv_A 157 KFFEIYTP 164 (232)
T ss_dssp HHHHHHGG
T ss_pred HHHHHHHH
Confidence 56676654
No 378
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=30.97 E-value=1.4e+02 Score=20.90 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=43.7
Q ss_pred ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHH
Q 042079 50 AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECL 127 (153)
Q Consensus 50 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~ 127 (153)
+.+..++..... ...|+|-+ .|. .-|.+.++.++.. .+.+|++.+.+ -+.+.+.+.+
T Consensus 117 v~t~~e~~~A~~---------------~Gad~vk~---Fpa~~~gG~~~lk~l~~~--~~~ipvvaiGG-I~~~N~~~~l 175 (224)
T 1vhc_A 117 VNNPMAIEIALE---------------MGISAVKF---FPAEASGGVKMIKALLGP--YAQLQIMPTGG-IGLHNIRDYL 175 (224)
T ss_dssp ECSHHHHHHHHH---------------TTCCEEEE---TTTTTTTHHHHHHHHHTT--TTTCEEEEBSS-CCTTTHHHHH
T ss_pred cCCHHHHHHHHH---------------CCCCEEEE---eeCccccCHHHHHHHHhh--CCCCeEEEECC-cCHHHHHHHH
Confidence 777888766552 34788877 453 3379999999863 35788875554 4667788888
Q ss_pred Hh-cCccc
Q 042079 128 EE-GAQMF 134 (153)
Q Consensus 128 ~~-ga~~~ 134 (153)
+. |++..
T Consensus 176 ~agga~~v 183 (224)
T 1vhc_A 176 AIPNIVAC 183 (224)
T ss_dssp TSTTBCCE
T ss_pred hcCCCEEE
Confidence 87 66543
No 379
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.96 E-value=1.3e+02 Score=20.85 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCcEEEEecC
Q 042079 33 RKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~ 52 (153)
...+...+++.||.+..+..
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~ 46 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLANT 46 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 34455556667777665543
No 380
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=30.95 E-value=1.1e+02 Score=20.05 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=37.9
Q ss_pred CcccEEEEeC-CCCCCCHHH-HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 77 TKVNLVITDY-CMPGMTGYE-LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 77 ~~~dlii~D~-~~~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
..+.++++|- +.-.....+ +.+.+.... ..+.+|+.+... ......+......+-..|++.+++.+.+.+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~--~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYS--KSCRFILSCNYV--SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCG--GGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcC--CCCeEEEEeCCh--hhcCHHHHHhCceeecCCCCHHHHHHHHHHH
Confidence 4567888874 221212233 333333321 345555555432 2233444444556667899999988877653
No 381
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=30.84 E-value=1.5e+02 Score=21.76 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=37.0
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
+.++..|+... +..++++-+. +.+...++.+.|++....-+++++.++++...
T Consensus 185 ~ai~~~r~~~~-~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~ 237 (299)
T 2jbm_A 185 KAVRAARQAAD-FALKVEVECS--SLQEAVQAAEAGADLVLLDNFKPEELHPTATV 237 (299)
T ss_dssp HHHHHHHHHHT-TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHhCC-cCCeEEEecC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 45566665432 2356766553 45677889999998887888999999876554
No 382
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=30.69 E-value=93 Score=21.05 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=36.5
Q ss_pred CCcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCC-hhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 76 GTKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENI-PTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~-~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
...||+|++...+.-. +-..+++.+.+.-. +...+++...... ...........-.......+++.++.+++..
T Consensus 114 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWTEEPLRALNEIKRVLK-SDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKE 189 (242)
T ss_dssp TTCEEEEEEESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHH
T ss_pred CCCccEEEEcChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHH
Confidence 4579999987655533 44567777765321 3334444432221 1111111111112223455777777776654
No 383
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=30.48 E-value=1.1e+02 Score=20.56 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=25.3
Q ss_pred CCeEEEEeCCH--HHHHHHHHHHHhcCcEEEEec
Q 042079 20 PPHVLAVDDSI--VDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 20 ~~~iLiidd~~--~~~~~l~~~l~~~~~~v~~~~ 51 (153)
.++|.|-.|+- ...+.+..+|+..|++|.-+.
T Consensus 21 ~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G 54 (166)
T 3s5p_A 21 SMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLG 54 (166)
T ss_dssp TCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcC
Confidence 47899988886 566788899999999887543
No 384
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=30.39 E-value=1.6e+02 Score=21.60 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCeEEEEeCCH-HHHHHHHHHHHhcCcEEEEec--CHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSI-VDRKIVENLLKNSACKVTTAE--NGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~-~~~~~l~~~l~~~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..+++|+.+.+ .....++.+.++.+-.+.... +..+....+. ..|+.++=... ..-|..+
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~----------------~adv~v~ps~~-e~~~~~~ 347 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG----------------SVDFVIIPSYF-EPFGLVA 347 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHT----------------TCSEEEECBSC-CSSCHHH
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHH----------------HCCEEEeCCCC-CCccHHH
Confidence 45677777654 233556666666552232333 4455545552 35777754332 3446677
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
++.+.. .+|+|. +.. ....+..+.| .+++..|-+.+++.+.+.+++
T Consensus 348 ~EAma~-----G~Pvi~-s~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll 393 (439)
T 3fro_A 348 LEAMCL-----GAIPIA-SAV---GGLRDIITNE-TGILVKAGDPGELANAILKAL 393 (439)
T ss_dssp HHHHHT-----TCEEEE-ESS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHC-----CCCeEE-cCC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHH
Confidence 777653 568764 332 2334455566 889999999999998877653
No 385
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=30.37 E-value=57 Score=23.20 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=23.0
Q ss_pred CeEEEEeCCHH--------HHHHHHHHHHhcCcEEEEecCH
Q 042079 21 PHVLAVDDSIV--------DRKIVENLLKNSACKVTTAENG 53 (153)
Q Consensus 21 ~~iLiidd~~~--------~~~~l~~~l~~~~~~v~~~~~~ 53 (153)
++|+|+.+... ....+...+++.|+.+..+...
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 57888887542 3345667778889998877654
No 386
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=30.14 E-value=1.9e+02 Score=22.24 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=33.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc------CcE---E-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS------ACK---V-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~------~~~---v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
.+|-+||=|+...+..+.++... ... + ....++.+.++.... ...+||+||+|+..+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~------------~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK------------EGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH------------HTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh------------ccCceeEEEECCCCC
Confidence 46777788887777777765321 011 2 345666665553311 135799999997553
No 387
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=30.13 E-value=1.6e+02 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=25.0
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhh
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTR 122 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~ 122 (153)
.++|.|++.. .+.....+++.+++... .+|++......+...
T Consensus 197 ~~~dav~~~~--~~~~a~~~~~~~~~~g~--~~~~~~~~~~~~~~~ 238 (392)
T 3lkb_A 197 AGVEYVVHQN--VAGPVANILKDAKRLGL--KMRHLGAHYTGGPDL 238 (392)
T ss_dssp TTCCEEEEES--CHHHHHHHHHHHHHTTC--CCEEEECGGGCSHHH
T ss_pred cCCCEEEEec--CcchHHHHHHHHHHcCC--CceEEEecCcccHHH
Confidence 3589998754 33456778888887653 567654433333433
No 388
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=30.07 E-value=1.1e+02 Score=24.00 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=39.9
Q ss_pred CcccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..+|.+.++...... ..+++++++++.. +.+|+++ ..-.+.+....+.+.|++.+..
T Consensus 248 aGvd~v~i~~~~G~~~~~~e~i~~i~~~~--p~~pvi~-g~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 248 AGVDVIVIDTAHGHSRRVIETLEMIKADY--PDLPVVA-GNVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp TTCSEEEECCSCCSSHHHHHHHHHHHHHC--TTSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred hCCCEEEEEecCCchHHHHHHHHHHHHHC--CCceEEe-CCcCCHHHHHHHHHcCCCEEEE
Confidence 357999988754322 3678899998754 3578765 3334677778889999987754
No 389
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=30.07 E-value=1.4e+02 Score=21.17 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 80 NLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 80 dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
.++-++. .......++++++++.. ..+|+++=-+-.+.+.+.++++ ||+..+.-.
T Consensus 157 ~~VYl~s-~G~~~~~~~i~~i~~~~--~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 157 PIFYLEY-SGVLGDIEAVKKTKAVL--ETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHTC--SSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CEEEEeC-CCccChHHHHHHHHHhc--CCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 4666665 44445688999998743 2678876666678888888878 999876543
No 390
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=30.03 E-value=1.5e+02 Score=20.96 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=35.4
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCC--hhh----HHHHHHhcCccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENI--PTR----INECLEEGAQMF 134 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~--~~~----~~~a~~~ga~~~ 134 (153)
...|+|.+.. + -+++.++++++.. ++|+++..+-.. .+. ..++++.|++.+
T Consensus 178 ~Gad~i~~~~--~--~~~~~l~~i~~~~---~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv 234 (273)
T 2qjg_A 178 LGADIVKTSY--T--GDIDSFRDVVKGC---PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGV 234 (273)
T ss_dssp TTCSEEEECC--C--SSHHHHHHHHHHC---SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEE
T ss_pred cCCCEEEECC--C--CCHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 3578888774 2 4688888887643 689998776553 333 666778998765
No 391
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=29.92 E-value=1.3e+02 Score=20.31 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=28.6
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
...|++++-..... ....++...++.. +...+|..+ .+..........|++..+.
T Consensus 64 ~~ad~vi~~~~~d~-~n~~~~~~a~~~~--~~~~iia~~--~~~~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 64 SKNDVVVILTPRDE-VNLFIAQLVMKDF--GVKRVVSLV--NDPGNMEIFKKMGITTVLN 118 (218)
T ss_dssp CTTCEEEECCSCHH-HHHHHHHHHHHTS--CCCEEEECC--CSGGGHHHHHHHTCEECCC
T ss_pred ccCCEEEEecCCcH-HHHHHHHHHHHHc--CCCeEEEEE--eCcchHHHHHHCCCCEEEC
Confidence 45788886543221 1223333344422 344555444 3455556667889876543
No 392
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.89 E-value=1.4e+02 Score=20.70 Aligned_cols=20 Identities=0% Similarity=-0.002 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCcEEEEecC
Q 042079 33 RKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 33 ~~~l~~~l~~~~~~v~~~~~ 52 (153)
...+...+++.||.+..+..
T Consensus 32 ~~gi~~~a~~~g~~~~~~~~ 51 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMSTG 51 (292)
T ss_dssp HHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHcCCEEEEEeC
Confidence 34455556677887766543
No 393
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=29.83 E-value=1.2e+02 Score=20.04 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=32.2
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc--CCCChhHHHHHHhh
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML--KPLKPSDVKKLTGH 150 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~--KP~~~~~l~~~~~~ 150 (153)
++.|++. .+++.++|+.........+...|...|+. || .+.-+..++.+
T Consensus 55 l~~L~~~----g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kp-k~~~~~~~~~~ 105 (191)
T 3n1u_A 55 LKLLMAA----GIQVAIITTAQNAVVDHRMEQLGITHYYKGQVD-KRSAYQHLKKT 105 (191)
T ss_dssp HHHHHHT----TCEEEEECSCCSHHHHHHHHHHTCCEEECSCSS-CHHHHHHHHHH
T ss_pred HHHHHHC----CCeEEEEeCcChHHHHHHHHHcCCccceeCCCC-hHHHHHHHHHH
Confidence 7777764 46899999877666666667788877654 33 34444555443
No 394
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=29.77 E-value=1.1e+02 Score=19.37 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=35.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
...++++==-++..++.+.+.|.++|..+..... +. ....+|+++.|-
T Consensus 6 dgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~de-----r~---------------~~~eyDi~lTDn 53 (117)
T 2kx7_A 6 DDVCVMVDVTSAEIRNIVTRQLENWGATCITPDE-----RL---------------ISQDYDIFLTDN 53 (117)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCS-----SS---------------SCCCCSEEEEES
T ss_pred cCcEEEEEcCcHHHHHHHHHHHHhcCCeEEeccc-----cC---------------CCCcccEEEecC
Confidence 3456777777899999999999999987766532 11 245689999984
No 395
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=29.76 E-value=1.2e+02 Score=19.84 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=23.2
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCC---hhhHHHHHHhcCcc
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENI---PTRINECLEEGAQM 133 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~---~~~~~~a~~~ga~~ 133 (153)
...++++.|++. .+++.++|+... ..........|...
T Consensus 38 g~~~~L~~L~~~----g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~ 78 (189)
T 3ib6_A 38 NAKETLEKVKQL----GFKQAILSNTATSDTEVIKRVLTNFGIID 78 (189)
T ss_dssp THHHHHHHHHHT----TCEEEEEECCSSCCHHHHHHHHHHTTCGG
T ss_pred CHHHHHHHHHHC----CCEEEEEECCCccchHHHHHHHHhcCchh
Confidence 456888888874 468888887654 33233334556543
No 396
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=29.73 E-value=1.1e+02 Score=19.83 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=32.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc-EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC-KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
..++.-+|-++......+..++..+. .+....+..+.+... ...+||+|+++.
T Consensus 44 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~--------------~~~~fD~v~~~~ 97 (185)
T 3mti_A 44 SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY--------------VREPIRAAIFNL 97 (185)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT--------------CCSCEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh--------------ccCCcCEEEEeC
Confidence 56799999999988888887776553 233322222211111 135699999984
No 397
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=29.71 E-value=1.7e+02 Score=21.66 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=42.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhc--Cc---EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNS--AC---KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM- 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~--~~---~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~- 91 (153)
+..++..+|-++......+..+... ++ .+. ...+..+.+... ....||+|++|...|..
T Consensus 143 ~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~--------------~~~~fDlIi~d~~~p~~~ 208 (334)
T 1xj5_A 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA--------------AEGSYDAVIVDSSDPIGP 208 (334)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS--------------CTTCEEEEEECCCCTTSG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc--------------cCCCccEEEECCCCccCc
Confidence 3468999999999888888776531 11 222 345554443322 12469999999765432
Q ss_pred -C---HHHHHHHHHh
Q 042079 92 -T---GYELLKKIKE 102 (153)
Q Consensus 92 -~---g~~~~~~lr~ 102 (153)
. ..++++.+++
T Consensus 209 ~~~l~~~~~l~~~~~ 223 (334)
T 1xj5_A 209 AKELFEKPFFQSVAR 223 (334)
T ss_dssp GGGGGSHHHHHHHHH
T ss_pred chhhhHHHHHHHHHH
Confidence 1 2466777664
No 398
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=29.69 E-value=1.4e+02 Score=21.43 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=25.4
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhh
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTR 122 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~ 122 (153)
.+|.|++.... .....+++.+++... ++|++..........
T Consensus 194 ~~d~i~~~~~~--~~a~~~~~~~~~~g~--~~p~~~~~~~~~~~~ 234 (358)
T 3hut_A 194 APQAIYLAMAY--EDAAPFLRALRARGS--ALPVYGSSALYSPKF 234 (358)
T ss_dssp CCSEEEEESCH--HHHHHHHHHHHHTTC--CCCEEECGGGCSHHH
T ss_pred CCCEEEEccCc--hHHHHHHHHHHHcCC--CCcEEecCcccCHHH
Confidence 57888886422 245678888887653 678765544334443
No 399
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=29.68 E-value=59 Score=24.91 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=43.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCC---hhHHHHHHh
Q 042079 82 VITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLK---PSDVKKLTG 149 (153)
Q Consensus 82 ii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~---~~~l~~~~~ 149 (153)
=|+++..|+....+.++.+++.. ++|+++=. +-+...+.+|.+.|++.+-.-|=+ .+.+++++.
T Consensus 61 diVRvavp~~~~a~al~~I~~~~---~vPlvaDi-Hf~~~lal~a~e~G~dklRINPGNig~~~~~~~vv~ 127 (366)
T 3noy_A 61 EIVRVAVPHKEDVEALEEIVKKS---PMPVIADI-HFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVE 127 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC---SSCEEEEC-CSCHHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHH
T ss_pred CEEEeCCCChHHHHHHHHHHhcC---CCCEEEeC-CCCHHHHHHHHHhCCCeEEECCcccCchhHHHHHHH
Confidence 35566778887788889998753 67876433 346778888999999987666632 334445443
No 400
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=29.68 E-value=1.3e+02 Score=20.94 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCcEEEEe
Q 042079 34 KIVENLLKNSACKVTTA 50 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~~~ 50 (153)
..+...+++.||.+..+
T Consensus 28 ~gi~~~a~~~g~~~~~~ 44 (290)
T 2rgy_A 28 KQTDLELRAVHRHVVVA 44 (290)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 33444455566665544
No 401
>3tlq_A Regulatory protein YDIV; anti-FLHD4C2 factor, repress motility, transcription; 1.91A {Escherichia coli}
Probab=29.56 E-value=24 Score=24.78 Aligned_cols=72 Identities=7% Similarity=-0.013 Sum_probs=43.1
Q ss_pred CcccEEEEeCCC-----CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC---cccccCCCChhHHHHHH
Q 042079 77 TKVNLVITDYCM-----PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA---QMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 77 ~~~dlii~D~~~-----~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga---~~~l~KP~~~~~l~~~~ 148 (153)
-++|.|=+|-.+ .+.....+++.+-.....-.+.+| .-+-.+.+....+.+.|+ .+|+.+|+..+++..++
T Consensus 162 l~~d~iKID~s~v~~~~~~~~~~~iv~~ii~~a~~l~~~vv-AEGVEt~~q~~~l~~lG~~~~QGy~f~P~p~~el~~ll 240 (242)
T 3tlq_A 162 GLFTRVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCII-AGGIDTAEILAQITPFDFHALQGCLWPAVPINQITTLV 240 (242)
T ss_dssp TCCSEEEECHHHHHHHHHSGGGHHHHHHHHHHHTTTCSEEE-ECCCCSHHHHHHHGGGCCSEECSTTSCCEEGGGGGGGS
T ss_pred CCCeEEEEcHHHHhhhccChhHHHHHHHHHHHHHHcCCEEE-EEeCCcHHHHHHHHHcCCCEEeCCCCCCCCHHHHHHHh
Confidence 468888777432 122334455555433222244443 344456666677778886 56888999999987665
Q ss_pred h
Q 042079 149 G 149 (153)
Q Consensus 149 ~ 149 (153)
.
T Consensus 241 ~ 241 (242)
T 3tlq_A 241 Q 241 (242)
T ss_dssp C
T ss_pred C
Confidence 4
No 402
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=29.51 E-value=1.5e+02 Score=21.09 Aligned_cols=41 Identities=5% Similarity=-0.013 Sum_probs=26.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhh
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTR 122 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~ 122 (153)
.+|.|++.. .+.....+++.+++.. -.+|++......+...
T Consensus 190 ~~dav~~~~--~~~~a~~~~~~~~~~g--~~~p~i~~~g~~~~~~ 230 (362)
T 3snr_A 190 NPDAILVGA--SGTAAALPQTTLRERG--YNGLIYQTHGAASMDF 230 (362)
T ss_dssp CCSEEEEEC--CHHHHHHHHHHHHHTT--CCSEEEECGGGCSHHH
T ss_pred CCCEEEEec--CcchHHHHHHHHHHcC--CCccEEeccCcCcHHH
Confidence 589998754 2345677888888765 3678755554444443
No 403
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=29.50 E-value=89 Score=18.32 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
+.-.+.|+-|++.....+..++++.|+.+....
T Consensus 28 ~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 28 AGGVVTVLVDNDISRQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp GCCEEEEEESSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 345788888999999999999999999886654
No 404
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=29.50 E-value=34 Score=24.79 Aligned_cols=38 Identities=8% Similarity=-0.096 Sum_probs=23.3
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEe
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t 115 (153)
..||+|++...+.-.+-..+++.+.+.- .+...+++.+
T Consensus 184 ~~fD~V~~~~~l~~~~~~~~l~~~~~~L-kpgG~l~~~~ 221 (312)
T 3vc1_A 184 GAVTASWNNESTMYVDLHDLFSEHSRFL-KVGGRYVTIT 221 (312)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHE-EEEEEEEEEE
T ss_pred CCEeEEEECCchhhCCHHHHHHHHHHHc-CCCcEEEEEE
Confidence 5799999876555445667777776532 1344455444
No 405
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=29.39 E-value=1e+02 Score=22.74 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=27.9
Q ss_pred CcEEEEeCCC--ChhhHHHHHHhcCcccccCC--CChhHHHHHHh
Q 042079 109 VPVVVVSSEN--IPTRINECLEEGAQMFMLKP--LKPSDVKKLTG 149 (153)
Q Consensus 109 ~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP--~~~~~l~~~~~ 149 (153)
+=+|+++.+. ..+...+|++.|.+-|+-|| .+.++.++++.
T Consensus 68 vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~ 112 (352)
T 3kux_A 68 IDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKE 112 (352)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHH
Confidence 4444454433 35666788999999999999 56666666654
No 406
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=29.32 E-value=81 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+++++.+++.. ..++|||....-.+.+++.+++..||+..
T Consensus 360 l~~i~~v~~~v-~~~iPVIg~GGI~s~~DA~e~l~aGAd~V 399 (443)
T 1tv5_A 360 TKFICEMYNYT-NKQIPIIASGGIFSGLDALEKIEAGASVC 399 (443)
T ss_dssp HHHHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHc-CCCCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence 46778887643 13789999998889999999999998654
No 407
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=29.30 E-value=1.4e+02 Score=20.65 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=38.5
Q ss_pred cccEEEEeCCC-CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCc
Q 042079 78 KVNLVITDYCM-PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQ 132 (153)
Q Consensus 78 ~~dlii~D~~~-~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~ 132 (153)
..|.|-....+ ++...++.++.+++.. ..++||+...+-.+.+...+.++.|++
T Consensus 145 Gad~I~tstg~~~gga~~~~i~~v~~~v-~~~ipVia~GGI~t~~da~~~l~aGA~ 199 (225)
T 1mzh_A 145 GADFIKTSTGFAPRGTTLEEVRLIKSSA-KGRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp TCSEEECCCSCSSSCCCHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHh-CCCCcEEEECCCCCHHHHHHHHHhCch
Confidence 46888555433 2223467788887642 247899988888888999999999988
No 408
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=29.21 E-value=1.8e+02 Score=21.81 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC-cccccCCCCh
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA-QMFMLKPLKP 141 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga-~~~l~KP~~~ 141 (153)
.++..++|++. ..+||+.--.-.+.....++++.|+ +.+..||-..
T Consensus 225 ~~~~~~~l~~~---~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 225 SYEECQQVRRV---ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp SHHHHHHHHTT---CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred CHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 35566666653 2578764433346777778887774 5567778654
No 409
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=29.21 E-value=90 Score=22.76 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=44.1
Q ss_pred CcccEEEEe-CC--CCC----CCHHHHHHHHHhccCCCCCcEEEEeCCC-C-----hhhHHHHHHhcCccc-ccCC----
Q 042079 77 TKVNLVITD-YC--MPG----MTGYELLKKIKESSVMKEVPVVVVSSEN-I-----PTRINECLEEGAQMF-MLKP---- 138 (153)
Q Consensus 77 ~~~dlii~D-~~--~~~----~~g~~~~~~lr~~~~~~~~pii~~t~~~-~-----~~~~~~a~~~ga~~~-l~KP---- 138 (153)
+..+++++. +. .|. .-.+..+..+++.. .+||++.+++. . ......|...|+++. +-|-
T Consensus 172 Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~---~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~~~d 248 (276)
T 1vs1_A 172 GNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT---HLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPE 248 (276)
T ss_dssp TCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB---SSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSSGG
T ss_pred CCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh---CCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcc
Confidence 346889887 42 222 12355566777642 57887776643 2 355667788999853 3332
Q ss_pred ---------CChhHHHHHHhhh
Q 042079 139 ---------LKPSDVKKLTGHL 151 (153)
Q Consensus 139 ---------~~~~~l~~~~~~~ 151 (153)
++++++.+++..+
T Consensus 249 ~a~~D~~~sl~p~~~~~lv~~i 270 (276)
T 1vs1_A 249 EALSDAKQQLTPGEFARLMGEL 270 (276)
T ss_dssp GCSSCGGGCBCHHHHHHHHHHH
T ss_pred cCCCchhcCCCHHHHHHHHHHH
Confidence 5788888877665
No 410
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=29.19 E-value=1.1e+02 Score=20.14 Aligned_cols=31 Identities=13% Similarity=-0.012 Sum_probs=21.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
++|||....-.....+...|.+.|++|....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIV 31 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEE
Confidence 4688888777777777777766788776543
No 411
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=28.96 E-value=1.7e+02 Score=21.30 Aligned_cols=73 Identities=7% Similarity=0.012 Sum_probs=42.6
Q ss_pred CcccEEEEeC-CC-CCCCHHHHHHHHHhccCCCCCcEEEEeCCCCh----hhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 77 TKVNLVITDY-CM-PGMTGYELLKKIKESSVMKEVPVVVVSSENIP----TRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~-~~-~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~----~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
....+|++|- ++ .+.++.+.+...=+.. .+.+.+|+.+...+. .....++...+.-+-.+|++..++...+.+
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLL-HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 3467888875 44 4445655444333323 245666666654332 334555555556677789899988866554
No 412
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=28.77 E-value=87 Score=17.99 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=24.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
.-.+.|+-|++.....+..++++.|+.+....
T Consensus 37 G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~ 68 (82)
T 3lvj_C 37 GETLLIIADDPATTRDIPGFCTFMEHELVAKE 68 (82)
T ss_dssp TCEEEEEECCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 45677777888888889999999999876653
No 413
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=28.59 E-value=1.3e+02 Score=20.01 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=23.3
Q ss_pred CcccEEEEeCCCCCC---------CHHHHHHHHHhccCCCCCcEEEEeCC
Q 042079 77 TKVNLVITDYCMPGM---------TGYELLKKIKESSVMKEVPVVVVSSE 117 (153)
Q Consensus 77 ~~~dlii~D~~~~~~---------~g~~~~~~lr~~~~~~~~pii~~t~~ 117 (153)
.+||+|++.+...+. +--.+++.+++.. +..+|++++..
T Consensus 82 ~~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~--p~~~ii~~~~~ 129 (215)
T 2vpt_A 82 HNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVK--PNVTLFVADYY 129 (215)
T ss_dssp HCCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHC--TTCEEEEECCC
T ss_pred cCCCEEEEEccccccCCCCChhHHHHHHHHHHHHHhC--CCCEEEEEeCC
Confidence 358999986643221 1234566777653 56777777654
No 414
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=28.45 E-value=1.9e+02 Score=21.97 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=52.9
Q ss_pred HHHHhcCcEEEE--ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC----CCCHHHHHHHHHhccCCCCCcE
Q 042079 38 NLLKNSACKVTT--AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP----GMTGYELLKKIKESSVMKEVPV 111 (153)
Q Consensus 38 ~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~----~~~g~~~~~~lr~~~~~~~~pi 111 (153)
..|+..|+.+.. +.++...+..+. .-++|.|=+|-.+- ......+++.+-.........+
T Consensus 329 ~~l~~~G~~ialDDfG~g~ssl~~L~--------------~l~~d~iKiD~~~i~~~~~~~~~~~~~~~i~~~~~~~~~v 394 (437)
T 3hvb_A 329 QGLATLHCQAAISQFGCSLNPFNALK--------------HLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLS 394 (437)
T ss_dssp HHHHHTTCEEEEEEETCSSSHHHHHT--------------TSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHCCCEEEEcCCCCCccHHHHHh--------------hCCCCEEEECHHHHHhHhhCcHHHHHHHHHHHHHHcCCCE
Confidence 446677887653 555555666662 45689999995432 1123334444322111123444
Q ss_pred EEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHH
Q 042079 112 VVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDV 144 (153)
Q Consensus 112 i~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l 144 (153)
| ..+-.+.+....+.+.|++ + |+.||....++
T Consensus 395 i-aegVEt~~~~~~l~~~G~~~~QG~~~~~P~~~~~~ 430 (437)
T 3hvb_A 395 I-VPFVESASVLATLWQAGATYIQGYYLQGPSQAMDY 430 (437)
T ss_dssp E-ECCCCSHHHHHHHHHHTCSEEECTTTCCCBSSCCC
T ss_pred E-eeeeCCHHHHHHHHHcCCCEeccccCCCCCccccC
Confidence 4 4555677777778888875 3 47789776543
No 415
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=28.24 E-value=1.5e+02 Score=20.59 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=45.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..|+ .+. ...+..+.+..+.... .....||+|++|... .+-..+
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~---------~~~~~fD~V~~d~~~--~~~~~~ 172 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDE---------KNHGSYDFIFVDADK--DNYLNY 172 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSG---------GGTTCBSEEEECSCS--TTHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhcc---------CCCCCEEEEEEcCch--HHHHHH
Confidence 46899999999998888888887665 233 3455555544331000 002469999999653 234556
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 173 l~~~~~ 178 (247)
T 1sui_A 173 HKRLID 178 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 416
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=28.08 E-value=1.3e+02 Score=19.88 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc-EEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC-CHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC-KVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM-TGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~-~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~-~g~~~ 96 (153)
..++..+|-++......+..+...+. .+.. ..+..+ +. . ....||+|++...+... +-..+
T Consensus 62 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~-~--------------~~~~fD~v~~~~~l~~~~~~~~~ 125 (219)
T 3dh0_A 62 KGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK-IP-L--------------PDNTVDFIFMAFTFHELSEPLKF 125 (219)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB-CS-S--------------CSSCEEEEEEESCGGGCSSHHHH
T ss_pred CcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc-CC-C--------------CCCCeeEEEeehhhhhcCCHHHH
Confidence 35788899888888777777765442 1222 222111 00 1 23569999997655433 44566
Q ss_pred HHHHHh
Q 042079 97 LKKIKE 102 (153)
Q Consensus 97 ~~~lr~ 102 (153)
++.+.+
T Consensus 126 l~~~~~ 131 (219)
T 3dh0_A 126 LEELKR 131 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 417
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=27.98 E-value=2.2e+02 Score=22.43 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=55.3
Q ss_pred eEEEEeC----CHHHHHHHHHHHHhc-CcE--EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC----
Q 042079 22 HVLAVDD----SIVDRKIVENLLKNS-ACK--VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG---- 90 (153)
Q Consensus 22 ~iLiidd----~~~~~~~l~~~l~~~-~~~--v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~---- 90 (153)
.++.++- .....+.++.+-+.. +.. +..+.+...+..+.. ...|.|.+......
T Consensus 245 d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~---------------aGaD~I~Vg~g~Gs~~~t 309 (496)
T 4fxs_A 245 DVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE---------------AGVSAVKVGIGPGSICTT 309 (496)
T ss_dssp SEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHH---------------HTCSEEEECSSCCTTBCH
T ss_pred ceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHH---------------hCCCEEEECCCCCcCccc
Confidence 4555542 233334444444443 222 334666666655442 24788887532111
Q ss_pred -------CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 91 -------MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 91 -------~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...+..+..+.+......+|+|.-.+-.+..++.+++..||+...
T Consensus 310 r~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~ 361 (496)
T 4fxs_A 310 RIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVM 361 (496)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred ccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEE
Confidence 223455555543211125899887777789999999999998754
No 418
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=27.95 E-value=69 Score=24.05 Aligned_cols=14 Identities=7% Similarity=0.072 Sum_probs=10.9
Q ss_pred CcccEEEEeCCCCC
Q 042079 77 TKVNLVITDYCMPG 90 (153)
Q Consensus 77 ~~~dlii~D~~~~~ 90 (153)
.++|+|++|+.-..
T Consensus 159 ~~~D~ivcDigeSs 172 (321)
T 3lkz_A 159 ECCDTLLCDIGESS 172 (321)
T ss_dssp CCCSEEEECCCCCC
T ss_pred CCCCEEEEECccCC
Confidence 56999999997333
No 419
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=27.87 E-value=82 Score=23.53 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=34.3
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc------cccC-CCChhHHH
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM------FMLK-PLKPSDVK 145 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~------~l~K-P~~~~~l~ 145 (153)
++++.+++.. +.+|||...+-.+.+++.+.+..||+. ++.+ |.-..++.
T Consensus 266 ~~v~~~~~~~--~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~ 321 (354)
T 3tjx_A 266 ANINAFYRRC--PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLT 321 (354)
T ss_dssp HHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHhc--CCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHH
Confidence 4455565533 478999888888899999999999965 3433 65555554
No 420
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=27.78 E-value=93 Score=23.11 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=29.5
Q ss_pred CCcEEEEeCCCC--hhhHHHHHHhcCcccccCCC--ChhHHHHHHhh
Q 042079 108 EVPVVVVSSENI--PTRINECLEEGAQMFMLKPL--KPSDVKKLTGH 150 (153)
Q Consensus 108 ~~pii~~t~~~~--~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~~ 150 (153)
++=+|+++.+.. .+...+|++.|..-|+-||+ +.++.++++..
T Consensus 65 ~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (362)
T 3fhl_A 65 EIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIAL 111 (362)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHH
Confidence 344555554433 55667889999999999997 66677666543
No 421
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=27.77 E-value=1.7e+02 Score=20.87 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=39.1
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
...++-++. .......++++++|+.. ..+|+++=-+-.+++...++.+ |||..+.--
T Consensus 159 g~~~vY~e~-sG~~g~~~~v~~ir~~~--~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGS 215 (235)
T 3w01_A 159 RLPVMYIEY-SGIYGDVSKVQAVSEHL--TETQLFYGGGISSEQQATEMAA-IADTIIVGD 215 (235)
T ss_dssp CCSEEEEEC-TTSCCCHHHHHHHHTTC--SSSEEEEESCCCSHHHHHHHHT-TSSEEEECT
T ss_pred CCCEEEEec-CCCcCCHHHHHHHHHhc--CCCCEEEECCcCCHHHHHHHHc-CCCEEEECC
Confidence 346777777 33333488999998743 3678876666667777777666 998876654
No 422
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=27.76 E-value=77 Score=24.69 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
+++++++++.. ..++|||...+-.+.+++.+++..||+..
T Consensus 332 l~~I~~v~~~v-~~~iPIIg~GGI~s~eDa~e~l~aGAd~V 371 (415)
T 3i65_A 332 TKFICEMYNYT-NKQIPIIASGGIFSGLDALEKIEAGASVC 371 (415)
T ss_dssp HHHHHHHHHHT-TTCSCEEECSSCCSHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 46778887643 13689999998889999999999999764
No 423
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=27.72 E-value=1.5e+02 Score=20.36 Aligned_cols=54 Identities=7% Similarity=-0.098 Sum_probs=37.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM 88 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~ 88 (153)
.++.+||-++......+......+..+.. ..+..+....+ ....||.|++|...
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--------------~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL--------------PDGHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS--------------CTTCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc--------------cccCCceEEEeeee
Confidence 46889999999998888887777765554 34444333222 24569999998644
No 424
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=27.72 E-value=1.2e+02 Score=19.80 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=33.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc--EEEEe-cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSAC--KVTTA-ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM 88 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~--~v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~ 88 (153)
.++..+|-++......+..+...+. .+... .+..+.... ....||+|+++...
T Consensus 48 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------------~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 48 GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY---------------IDCPVKAVMFNLGY 103 (197)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT---------------CCSCEEEEEEEESB
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh---------------ccCCceEEEEcCCc
Confidence 4789999999888888888776554 23332 332211111 13579999998643
No 425
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=27.70 E-value=73 Score=23.71 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=45.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
...++.|+.......+=+..+|.+.+..|+.+++...-+...- ...|+++.-..-|.+
T Consensus 178 ~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~dl~~~~---------------~~ADIvV~A~G~p~~ 235 (303)
T 4b4u_A 178 AGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELV---------------KQADIIVGAVGKAEL 235 (303)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH---------------HTCSEEEECSCSTTC
T ss_pred CCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCCCHHHHh---------------hcCCeEEeccCCCCc
Confidence 5689999999999999999999999999998887665443331 246899988877765
No 426
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=27.67 E-value=1.3e+02 Score=19.67 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=28.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh--cCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKN--SACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYC 87 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~--~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~ 87 (153)
..+++++|-|+... +..++.. .++.+..... ....+.+.. -...||+||+|+.
T Consensus 30 g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~------------l~~~yD~viiD~~ 84 (206)
T 4dzz_A 30 GYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRK------------DLADYDFAIVDGA 84 (206)
T ss_dssp TCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHH------------HTTTSSEEEEECC
T ss_pred CCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHH------------hcCCCCEEEEECC
Confidence 46799999886533 3444432 2355555443 222222211 1235899999973
No 427
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=27.52 E-value=92 Score=22.90 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=28.9
Q ss_pred CCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 108 EVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 108 ~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
.+=+|+++.+. ..+...+|++.|..-|+-||+ +.++..+++.
T Consensus 82 ~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 127 (340)
T 1zh8_A 82 LVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVE 127 (340)
T ss_dssp CCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 34455555433 356667889999999999996 6777666654
No 428
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=27.50 E-value=97 Score=18.09 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcC-cEEEEecCHHHHHHHh
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSA-CKVTTAENGMRALEFL 60 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~-~~v~~~~~~~~a~~~l 60 (153)
+.++|+|+.. -.....+...|...| +++..+....+..+.+
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 3468999998 555556666666667 7776655434434433
No 429
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=27.39 E-value=1.1e+02 Score=18.49 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=19.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEe
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTA 50 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~ 50 (153)
-.+.|+-|++.....+..++++.|+.+...
T Consensus 54 e~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 54 EILEVWIDYPMSKERIPETVKKLGHEVLEI 83 (98)
T ss_dssp CEEEEEESSCTHHHHHHHHHHHSSCCEEEE
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 346666666666677777777777766544
No 430
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=27.29 E-value=1.9e+02 Score=21.90 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=35.5
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcc--CCCCCcEEEEeCCCChhhHHHHHHhcCcc-cccCCCC
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESS--VMKEVPVVVVSSENIPTRINECLEEGAQM-FMLKPLK 140 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~--~~~~~pii~~t~~~~~~~~~~a~~~ga~~-~l~KP~~ 140 (153)
++++.+++--++ +.++..++|++.. ....+||+.-= -.+.....++++.|+.+ +..||..
T Consensus 226 ~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~ 288 (392)
T 3p3b_A 226 DVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIW 288 (392)
T ss_dssp TSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTT
T ss_pred hcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccc
Confidence 356777765555 4466667776540 00146765433 34566777888888544 5667765
No 431
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=27.28 E-value=1e+02 Score=23.03 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-Ccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQM 133 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~~ 133 (153)
..++++.+++.. .+|||....-.+.+.+.++++.| +|.
T Consensus 265 ~~~~~~~ik~~~---~iPVi~~GgI~s~e~a~~~L~~G~aD~ 303 (340)
T 3gr7_A 265 QVPFAELIRREA---DIPTGAVGLITSGWQAEEILQNGRADL 303 (340)
T ss_dssp THHHHHHHHHHT---TCCEEEESSCCCHHHHHHHHHTTSCSE
T ss_pred cHHHHHHHHHHc---CCcEEeeCCCCCHHHHHHHHHCCCeeE
Confidence 467888898753 68988777767888899999998 554
No 432
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=27.09 E-value=2.6e+02 Score=23.75 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=40.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 80 NLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 80 dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
|+.++ .+....-|+.+++.+.. .+|+|. |.. ....+....|..+++..|-+.+++.+.+.++
T Consensus 666 DvfV~-PS~~EgfglvllEAMA~-----G~PVIa-sd~---GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~l 727 (816)
T 3s28_A 666 GAFVQ-PALYEAFGLTVVEAMTC-----GLPTFA-TCK---GGPAEIIVHGKSGFHIDPYHGDQAADTLADF 727 (816)
T ss_dssp CEEEE-CCSCBSSCHHHHHHHHT-----TCCEEE-ESS---BTHHHHCCBTTTBEEECTTSHHHHHHHHHHH
T ss_pred eEEEE-CCCccCccHHHHHHHHc-----CCCEEE-eCC---CChHHHHccCCcEEEeCCCCHHHHHHHHHHH
Confidence 55554 22334456777777653 568875 332 2234455678889999999999998877543
No 433
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=26.98 E-value=35 Score=22.66 Aligned_cols=69 Identities=17% Similarity=0.371 Sum_probs=42.1
Q ss_pred cccEEEEeCCCCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCc---ccccCCCChhHHHHHHhhhc
Q 042079 78 KVNLVITDYCMPGM-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQ---MFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 78 ~~dlii~D~~~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~---~~l~KP~~~~~l~~~~~~~~ 152 (153)
..|++|..+.-|+. .++++--... ...|++.+...... ....++-.|.. .|-.+++.-.++.+++.+.+
T Consensus 68 ~aD~vvA~l~~~d~Gt~~EiG~A~a-----lgkPV~~l~~~~~~-~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~ 140 (152)
T 4fyk_A 68 QADVVVAEVTQPSLGVGYELGRAVA-----LGKPILCLFRPQSG-RVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYF 140 (152)
T ss_dssp HCSEEEEECSSCCHHHHHHHHHHHH-----TTCCEEEEECGGGS-CCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHH
T ss_pred HCCEEEEeCCCCCCCHHHHHHHHHH-----cCCeEEEEEeCCcc-chhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHH
Confidence 46999998875542 2444433322 24689988764321 12334445543 47788888899988887653
No 434
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=26.91 E-value=93 Score=21.82 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=53.5
Q ss_pred HHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEE--Ee-CCCCCCCHHHHHHHHHhccCC-CCCcEE
Q 042079 39 LLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVI--TD-YCMPGMTGYELLKKIKESSVM-KEVPVV 112 (153)
Q Consensus 39 ~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii--~D-~~~~~~~g~~~~~~lr~~~~~-~~~pii 112 (153)
.|+..|+ .++.+-+..+++.... -..++|= ++ +...+.+|.++++.+.+.... ..-..|
T Consensus 97 ~L~~~GI~vn~TlifS~~Qa~~Aa~---------------AGa~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~i 161 (212)
T 3r8r_A 97 ALTDLGIKTNVTLIFNANQALLAAR---------------AGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLDTQI 161 (212)
T ss_dssp HHHHTTCCEEEEEECSHHHHHHHHH---------------HTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHCCCcEEEEEeCCHHHHHHHHH---------------cCCeEEEeccchhhhcCCChHHHHHHHHHHHHHcCCCCEE
Confidence 3455554 5667788888776542 1234442 11 111246888888887542111 112455
Q ss_pred EEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 113 VVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 113 ~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
+.++-.+..+..++...|++..-.. +.-+.+++.
T Consensus 162 laAS~R~~~~v~~~a~~G~d~~Tip---~~vl~~l~~ 195 (212)
T 3r8r_A 162 IAASIRHPQHVTEAALRGAHIGTMP---LKVIHALTK 195 (212)
T ss_dssp EEBSCCSHHHHHHHHHTTCSEEEEC---HHHHHHHTC
T ss_pred EEecCCCHHHHHHHHHcCCCEEEcC---HHHHHHHHc
Confidence 6777778899999999999965333 344444443
No 435
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=26.85 E-value=1.3e+02 Score=19.28 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=41.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc--EE-EEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSAC--KV-TTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELL 97 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~--~v-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~ 97 (153)
.++..+|-++......+..+...+. .+ ....+..+....+.. ....||+|+++..........++
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------------~~~~fD~i~~~~~~~~~~~~~~~ 135 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE------------EKLQFDLVLLDPPYAKQEIVSQL 135 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH------------TTCCEEEEEECCCGGGCCHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh------------cCCCCCEEEECCCCCchhHHHHH
Confidence 5799999999888888877765553 23 234454443332200 13569999998543233455666
Q ss_pred HHH
Q 042079 98 KKI 100 (153)
Q Consensus 98 ~~l 100 (153)
+.+
T Consensus 136 ~~l 138 (187)
T 2fhp_A 136 EKM 138 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 436
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=26.85 E-value=2.1e+02 Score=21.77 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=42.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-----------CcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC-
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNS-----------ACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM- 88 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~-----------~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~- 88 (153)
.+|..||-++...+..+..+... .++ ....|+.+.++.... ...+||+||+|...
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~-vi~~Da~~~L~~~~~------------~~~~fDvII~D~~d~ 278 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQ-VLIEDCIPVLKRYAK------------EGREFDYVINDLTAV 278 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEE-EEESCHHHHHHHHHH------------HTCCEEEEEEECCSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEE-EEECcHHHHHHhhhc------------cCCCceEEEECCCCc
Confidence 57889999999888888876532 122 345666665543210 13569999999865
Q ss_pred CC------CCHHHHHHHH
Q 042079 89 PG------MTGYELLKKI 100 (153)
Q Consensus 89 ~~------~~g~~~~~~l 100 (153)
|. .-..+|.+.+
T Consensus 279 P~~~~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 279 PISTSPEEDSTWEFLRLI 296 (364)
T ss_dssp CCCCC----CHHHHHHHH
T ss_pred ccCcCchhhhHHHHHHHH
Confidence 42 2446777776
No 437
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=26.73 E-value=1.4e+02 Score=19.66 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=29.7
Q ss_pred HHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCC
Q 042079 96 LLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLK 140 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~ 140 (153)
+++.|++. .+++.++|+........-+...|...|+..+.+
T Consensus 54 ~l~~L~~~----g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~~ 94 (189)
T 3mn1_A 54 GIKMLIAS----GVTTAIISGRKTAIVERRAKSLGIEHLFQGRED 94 (189)
T ss_dssp HHHHHHHT----TCEEEEECSSCCHHHHHHHHHHTCSEEECSCSC
T ss_pred HHHHHHHC----CCEEEEEECcChHHHHHHHHHcCCHHHhcCcCC
Confidence 67788764 468998998776666666677898887765433
No 438
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.66 E-value=1.7e+02 Score=23.04 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=38.6
Q ss_pred CcccEEEEeC--CCCC--CCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 77 TKVNLVITDY--CMPG--MTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~--~~~~--~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..+.++|+|- .++. ..++..+..+-+. ...|+|+++......... .+..-+..+-.+|.+.+++.+.+.+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~---~~~~iIli~~~~~~~~l~-~l~~r~~~i~f~~~~~~~~~~~L~~ 220 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---TSTPLILICNERNLPKMR-PFDRVCLDIQFRRPDANSIKSRLMT 220 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---CSSCEEEEESCTTSSTTG-GGTTTSEEEECCCCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh---cCCCEEEEEcCCCCccch-hhHhceEEEEeCCCCHHHHHHHHHH
Confidence 4568899884 2332 2333444333222 357888888754322222 2233344566678888888877654
No 439
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=26.64 E-value=1.5e+02 Score=19.87 Aligned_cols=75 Identities=8% Similarity=0.004 Sum_probs=42.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcE--EEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACK--VTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~--v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
..++..+|-++......+..++..+.. +.. ..+..+.+. ....||+|+++... +-. +
T Consensus 77 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~----------------~~~~~D~v~~~~~~---~~~-~ 136 (204)
T 3njr_A 77 GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA----------------DLPLPEAVFIGGGG---SQA-L 136 (204)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT----------------TSCCCSEEEECSCC---CHH-H
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc----------------cCCCCCEEEECCcc---cHH-H
Confidence 457888888888887777776655432 332 233222111 12369999988744 333 6
Q ss_pred HHHHHhccCCCCCcEEEEe
Q 042079 97 LKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t 115 (153)
++.+.+.- .+...+++.+
T Consensus 137 l~~~~~~L-kpgG~lv~~~ 154 (204)
T 3njr_A 137 YDRLWEWL-APGTRIVANA 154 (204)
T ss_dssp HHHHHHHS-CTTCEEEEEE
T ss_pred HHHHHHhc-CCCcEEEEEe
Confidence 67665532 2344454443
No 440
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=26.61 E-value=1.5e+02 Score=20.08 Aligned_cols=50 Identities=8% Similarity=-0.070 Sum_probs=33.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcEEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEe
Q 042079 22 HVLAVDDSIVDRKIVENLLKNSACKVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITD 85 (153)
Q Consensus 22 ~iLiidd~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D 85 (153)
++..+|-++......+......+..+.. ..+..+...-+ ....||+|++|
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~--------------~~~~fD~V~~d 135 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL--------------PDGHFDGILYD 135 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS--------------CTTCEEEEEEC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc--------------CCCceEEEEEC
Confidence 7889999999888888877666655543 33443321112 13579999995
No 441
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=26.59 E-value=99 Score=22.58 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=26.9
Q ss_pred CcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 109 VPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 109 ~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
+=+|+++.+. ..+...+|++.|.+-++-||+ +.++.++++.
T Consensus 67 vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~ 111 (334)
T 3ohs_X 67 VEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVT 111 (334)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 4444454433 355567788899888889996 6666666654
No 442
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=26.58 E-value=1.2e+02 Score=22.46 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=42.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
....+++|+.......+-+..+|...|..|+.+++...-+... -...|+||.-..-|..
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~---------------~~~ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEE---------------VNKGDILVVATGQPEM 221 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHH---------------HTTCSEEEECCCCTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHH---------------hccCCEEEECCCCccc
Confidence 3568999999998888888888888898888886443323221 1347888887776653
No 443
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=26.57 E-value=1.2e+02 Score=22.33 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=42.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
....+++|+.......+-+..+|.+.|..|+.+++...-+... ....|++|.-..-|..
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~---------------~~~ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLY---------------TRQADLIIVAAGCVNL 216 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHH---------------HTTCSEEEECSSCTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHH---------------hhcCCEEEECCCCCCc
Confidence 4568999999998888888999988899888887543322221 1346888887765543
No 444
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=26.53 E-value=1.4e+02 Score=19.46 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=24.9
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
...++++.+++. ..++.++|+.............|...|+
T Consensus 74 ~~~~~l~~l~~~----g~~~~i~s~~~~~~~~~~l~~~~l~~~f 113 (205)
T 3m9l_A 74 GAVELVRELAGR----GYRLGILTRNARELAHVTLEAIGLADCF 113 (205)
T ss_dssp THHHHHHHHHHT----TCEEEEECSSCHHHHHHHHHHTTCGGGS
T ss_pred cHHHHHHHHHhc----CCeEEEEeCCchHHHHHHHHHcCchhhc
Confidence 467888888874 4678888876443333334456665554
No 445
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.41 E-value=1.6e+02 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=9.4
Q ss_pred HHHHHHHHhcCcEEEEec
Q 042079 34 KIVENLLKNSACKVTTAE 51 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~~~~ 51 (153)
..+...+++.||.+..+.
T Consensus 22 ~gi~~~a~~~g~~~~~~~ 39 (272)
T 3o74_A 22 KQLEQGARARGYQLLIAS 39 (272)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 334444555666655443
No 446
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=26.40 E-value=42 Score=24.37 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhccCCCCCcEE--EEeCCCChhhHHHHHHhcCccccc
Q 042079 92 TGYELLKKIKESSVMKEVPVV--VVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii--~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
..++.++++++.. .+|++ +..+-.+.+.+.++++.|++.++.
T Consensus 194 ~~~~~i~~l~~~~---~~pvi~~a~GGI~~~e~i~~~~~aGadgvvv 237 (297)
T 2zbt_A 194 APFELVKWVHDHG---RLPVVNFAAGGIATPADAALMMHLGMDGVFV 237 (297)
T ss_dssp CCHHHHHHHHHHS---SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHHHHhc---CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEE
No 447
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=26.40 E-value=1.2e+02 Score=18.71 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=50.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchh-------hhH--HhhhhcccCCCcccEEEEeCCCCCC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLV-------DEQ--EQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~-------~~~--~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
.+++|+.-.. ....+...|.+.|+.+..+....+.++.+... +.. +..+.. .-..+|++|+-.. .+.
T Consensus 7 ~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~--~~~~~d~vi~~~~-~~~ 82 (141)
T 3llv_A 7 YEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSL--DLEGVSAVLITGS-DDE 82 (141)
T ss_dssp CSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHS--CCTTCSEEEECCS-CHH
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhC--CcccCCEEEEecC-CHH
Confidence 4677777755 34445555555676666555444433332110 000 000000 1235788886543 111
Q ss_pred CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc
Q 042079 92 TGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM 135 (153)
Q Consensus 92 ~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l 135 (153)
.....+..+++.. ...+|..+. +........+.|++..+
T Consensus 83 ~n~~~~~~a~~~~---~~~iia~~~--~~~~~~~l~~~G~~~vi 121 (141)
T 3llv_A 83 FNLKILKALRSVS---DVYAIVRVS--SPKKKEEFEEAGANLVV 121 (141)
T ss_dssp HHHHHHHHHHHHC---CCCEEEEES--CGGGHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHhC---CceEEEEEc--ChhHHHHHHHcCCCEEE
Confidence 2233445555532 345555553 34555667788886544
No 448
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.34 E-value=89 Score=22.94 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=39.2
Q ss_pred CcccEEEEeC--CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhh
Q 042079 77 TKVNLVITDY--CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGH 150 (153)
Q Consensus 77 ~~~dlii~D~--~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~ 150 (153)
..+.++|+|- .|.....-.+++.+.+ . ..++.+|+++.. .+.....+..-+.-|-.+|.+.+++.+.+.+
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEe-p-~~~~~~Il~t~~--~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEE-P-PAETWFFLATRE--PERLLATLRSRCRLHYLAPPPEQYAVTWLSR 178 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTS-C-CTTEEEEEEESC--GGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcC-C-CCCeEEEEEeCC--hHhCcHHHhhcceeeeCCCCCHHHHHHHHHH
Confidence 4578898874 2222112234444432 2 134555555543 3444455666666777789999998876654
No 449
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=26.31 E-value=40 Score=24.72 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccCCCCCcEE--EEeCCCChhhHHHHHHhcCccc
Q 042079 93 GYELLKKIKESSVMKEVPVV--VVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii--~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
++++++++++. ..+|++ ...+-.+.+.+.+++..|++.+
T Consensus 195 ~~~~i~~i~~~---~~iPvi~~a~GGI~~~~d~~~~~~~GadgV 235 (305)
T 2nv1_A 195 PYELLLQIKKD---GKLPVVNFAAGGVATPADAALMMQLGADGV 235 (305)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSCCCSHHHHHHHHHTTCSCE
T ss_pred cHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHcCCCEE
Confidence 46777888764 367887 3444447888889999998765
No 450
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=26.19 E-value=1.6e+02 Score=20.27 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=44.7
Q ss_pred EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-C-CHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHH
Q 042079 49 TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-M-TGYELLKKIKESSVMKEVPVVVVSSENIPTRINEC 126 (153)
Q Consensus 49 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a 126 (153)
-+.+..|+..... ...|++-+ .|. . -|.+.++.++.. .+++|++.+.+ -+.+...+.
T Consensus 115 G~~t~~e~~~A~~---------------~Gad~v~~---Fpa~~~gG~~~lk~i~~~--~~~ipvvaiGG-I~~~n~~~~ 173 (214)
T 1wbh_A 115 GISTVSELMLGMD---------------YGLKEFKF---FPAEANGGVKALQAIAGP--FSQVRFCPTGG-ISPANYRDY 173 (214)
T ss_dssp EESSHHHHHHHHH---------------TTCCEEEE---TTTTTTTHHHHHHHHHTT--CTTCEEEEBSS-CCTTTHHHH
T ss_pred ecCCHHHHHHHHH---------------CCCCEEEE---ecCccccCHHHHHHHhhh--CCCCeEEEECC-CCHHHHHHH
Confidence 4788888776652 34788876 442 2 379999999863 35789876554 456778888
Q ss_pred HHh-cCccc
Q 042079 127 LEE-GAQMF 134 (153)
Q Consensus 127 ~~~-ga~~~ 134 (153)
++. |++..
T Consensus 174 l~agg~~~v 182 (214)
T 1wbh_A 174 LALKSVLCI 182 (214)
T ss_dssp HTSTTBSCE
T ss_pred HhcCCCeEE
Confidence 887 66543
No 451
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=26.02 E-value=62 Score=22.69 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=22.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEec
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~ 51 (153)
+.++|||... -.....+...|.+.|++|....
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~ 35 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTS 35 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEE
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEE
Confidence 4578999997 6666677777766788876543
No 452
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=25.97 E-value=1.9e+02 Score=20.87 Aligned_cols=77 Identities=6% Similarity=-0.044 Sum_probs=41.7
Q ss_pred CeEEEE-e-CCHHH---HHHHHHHHHhcCcEEEEe------cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC
Q 042079 21 PHVLAV-D-DSIVD---RKIVENLLKNSACKVTTA------ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP 89 (153)
Q Consensus 21 ~~iLii-d-d~~~~---~~~l~~~l~~~~~~v~~~------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~ 89 (153)
.+|.++ + ++... .+.++..++..|..+... .+....+..+. ...+|+|++.. .
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~--------------~~~~d~v~~~~--~ 213 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAM--------------SFNPDAIYITG--Y 213 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHH--------------HTCCSEEEECS--C
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHH--------------hcCCCEEEEcc--c
Confidence 567666 3 34322 244555666677654422 22333344331 24589999843 2
Q ss_pred CCCHHHHHHHHHhccCCCCCcEEEEe
Q 042079 90 GMTGYELLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 90 ~~~g~~~~~~lr~~~~~~~~pii~~t 115 (153)
+.....+++.+++... .+|++...
T Consensus 214 ~~~a~~~~~~~~~~g~--~~~~~~~~ 237 (366)
T 3td9_A 214 YPEIALISRQARQLGF--TGYILAGD 237 (366)
T ss_dssp HHHHHHHHHHHHHTTC--CSEEEECG
T ss_pred hhHHHHHHHHHHHcCC--CceEEeeC
Confidence 3346678888887653 56765443
No 453
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=25.95 E-value=2e+02 Score=21.13 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=40.9
Q ss_pred EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH----HHHhccCCCCCcEEEEeCCCChhh
Q 042079 47 VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK----KIKESSVMKEVPVVVVSSENIPTR 122 (153)
Q Consensus 47 v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~----~lr~~~~~~~~pii~~t~~~~~~~ 122 (153)
...+.+..++.+.+. ...|.|.+|-.- .+.++ .++.. .+++++. .++.-+.+.
T Consensus 201 ~vev~tlee~~~A~~---------------aGaD~I~ld~~~-----~~~l~~~v~~l~~~--~~~~~I~-ASGGIt~~n 257 (299)
T 2jbm_A 201 EVECSSLQEAVQAAE---------------AGADLVLLDNFK-----PEELHPTATVLKAQ--FPSVAVE-ASGGITLDN 257 (299)
T ss_dssp EEEESSHHHHHHHHH---------------TTCSEEEEESCC-----HHHHHHHHHHHHHH--CTTSEEE-EESSCCTTT
T ss_pred EEecCCHHHHHHHHH---------------cCCCEEEECCCC-----HHHHHHHHHHhhcc--CCCeeEE-EECCCCHHH
Confidence 446777777766552 348999998621 33343 33331 2457665 445557888
Q ss_pred HHHHHHhcCccc
Q 042079 123 INECLEEGAQMF 134 (153)
Q Consensus 123 ~~~a~~~ga~~~ 134 (153)
+.+..+.|++.+
T Consensus 258 i~~~~~aGaD~i 269 (299)
T 2jbm_A 258 LPQFCGPHIDVI 269 (299)
T ss_dssp HHHHCCTTCCEE
T ss_pred HHHHHHCCCCEE
Confidence 888889998765
No 454
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=25.94 E-value=91 Score=23.42 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQM 133 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~ 133 (153)
.+++++.+|+.. .+|||....-.+.+.+.++++.|..|
T Consensus 265 ~~~~~~~ir~~~---~iPVi~~Ggi~t~e~Ae~~l~~G~aD 302 (343)
T 3kru_A 265 QVKYAETIKKRC---NIKTSAVGLITTQELAEEILSNERAD 302 (343)
T ss_dssp THHHHHHHHHHH---TCEEEEESSCCCHHHHHHHHHTTSCS
T ss_pred eehHHHHHHHhc---CcccceeeeeeHHHHHHHHHhchhhH
Confidence 467888888753 58888777667788889999988433
No 455
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=25.71 E-value=1.4e+02 Score=19.35 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
.++++.|++. .++++++|+.........+...|...|+...
T Consensus 41 ~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~ 81 (180)
T 1k1e_A 41 GLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFLGK 81 (180)
T ss_dssp HHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeecCC
Confidence 4678888763 4689989987666655556678888776543
No 456
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=25.64 E-value=1e+02 Score=20.26 Aligned_cols=79 Identities=8% Similarity=-0.007 Sum_probs=43.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCc--EEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CCHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSAC--KVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MTGYE 95 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~--~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~g~~ 95 (153)
..++..+|-++......+..+...+. .+.. ..+..+ +. + ....||+|++...+.- .+-..
T Consensus 66 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~--------------~~~~~D~v~~~~~l~~~~~~~~ 129 (219)
T 3dlc_A 66 DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN-IP-I--------------EDNYADLIVSRGSVFFWEDVAT 129 (219)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB-CS-S--------------CTTCEEEEEEESCGGGCSCHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH-CC-C--------------CcccccEEEECchHhhccCHHH
Confidence 34688888888877777777665442 1222 222111 00 1 2357999999865543 34566
Q ss_pred HHHHHHhccCCCCCcEEEEe
Q 042079 96 LLKKIKESSVMKEVPVVVVS 115 (153)
Q Consensus 96 ~~~~lr~~~~~~~~pii~~t 115 (153)
+++.+++.- .+...+++..
T Consensus 130 ~l~~~~~~L-~pgG~l~~~~ 148 (219)
T 3dlc_A 130 AFREIYRIL-KSGGKTYIGG 148 (219)
T ss_dssp HHHHHHHHE-EEEEEEEEEE
T ss_pred HHHHHHHhC-CCCCEEEEEe
Confidence 777776532 1333444443
No 457
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=25.62 E-value=1.7e+02 Score=20.37 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=52.6
Q ss_pred HHHHHHhcCcE-EEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEE
Q 042079 36 VENLLKNSACK-VTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVV 114 (153)
Q Consensus 36 l~~~l~~~~~~-v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~ 114 (153)
+...|.+.+.- +....+..++++.+.... ...++++=+. +...++.++++.+++.. +++.+- .
T Consensus 19 ~~~~l~~~~ii~V~r~~~~~~~~~~~~al~-----------~gGv~~iel~--~k~~~~~~~i~~l~~~~--~~~~ig-a 82 (225)
T 1mxs_A 19 IDAICEKARILPVITIAREEDILPLADALA-----------AGGIRTLEVT--LRSQHGLKAIQVLREQR--PELCVG-A 82 (225)
T ss_dssp HHHHHHHHSEEEEECCSCGGGHHHHHHHHH-----------HTTCCEEEEE--SSSTHHHHHHHHHHHHC--TTSEEE-E
T ss_pred HHHHHHHCCEEEEEeCCCHHHHHHHHHHHH-----------HCCCCEEEEe--cCCccHHHHHHHHHHhC--cccEEe-e
Confidence 33445555543 334445555555442211 2346766555 44557888888887653 343332 2
Q ss_pred eCCCChhhHHHHHHhcCcccccCCCChhHHHHH
Q 042079 115 SSENIPTRINECLEEGAQMFMLKPLKPSDVKKL 147 (153)
Q Consensus 115 t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~ 147 (153)
..--..+....|+..|++.. +-|-...++.+.
T Consensus 83 gtvl~~d~~~~A~~aGAd~v-~~p~~d~~v~~~ 114 (225)
T 1mxs_A 83 GTVLDRSMFAAVEAAGAQFV-VTPGITEDILEA 114 (225)
T ss_dssp ECCCSHHHHHHHHHHTCSSE-ECSSCCHHHHHH
T ss_pred CeEeeHHHHHHHHHCCCCEE-EeCCCCHHHHHH
Confidence 22345677888999999855 456554444443
No 458
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=25.39 E-value=2e+02 Score=20.97 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCcEEEE-ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSACKVTT-AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~~~v~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+|.||.--..-...+..+.+..++++.. +....+..+.+.. .+.+-..+ +-- +
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---------------~~g~~~~~------~~~---~ 59 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE---------------ANGAEAVA------SPD---E 59 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH---------------TTTCEEES------SHH---H
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH---------------HcCCceeC------CHH---H
Confidence 367889988776665555555544666553 3333333333210 11111111 111 1
Q ss_pred HHHhccCCCCCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 99 KIKESSVMKEVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 99 ~lr~~~~~~~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
.+.. +.+-+|+++.+. ..+....|++.|..-++-||+ +.++..++..
T Consensus 60 ~l~~----~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~ 110 (344)
T 3euw_A 60 VFAR----DDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKE 110 (344)
T ss_dssp HTTC----SCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHH
T ss_pred HhcC----CCCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 2221 233444454433 245566788888888888984 4455555543
No 459
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=25.39 E-value=84 Score=20.78 Aligned_cols=74 Identities=7% Similarity=0.059 Sum_probs=35.5
Q ss_pred CCcccEEEEeCCCCCCCH---HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc-------------ccCCC
Q 042079 76 GTKVNLVITDYCMPGMTG---YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF-------------MLKPL 139 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g---~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~-------------l~KP~ 139 (153)
...||+|++...+.-... ..+++.+++.- .+...+++.............+......+ ..+.+
T Consensus 105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (218)
T 3ou2_A 105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAV-APGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFR 183 (218)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCC
T ss_pred CCceeEEEEechhhcCCHHHHHHHHHHHHHHc-CCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCC
Confidence 457999999876655443 56677666432 13344554444332222222222111111 13345
Q ss_pred ChhHHHHHHhh
Q 042079 140 KPSDVKKLTGH 150 (153)
Q Consensus 140 ~~~~l~~~~~~ 150 (153)
+++++.+++..
T Consensus 184 ~~~~~~~~l~~ 194 (218)
T 3ou2_A 184 SPAELTERLTA 194 (218)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77888877765
No 460
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=25.31 E-value=1.9e+02 Score=20.78 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=39.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHh--c---CcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCC-CC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKN--S---ACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMP-GM 91 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~--~---~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~-~~ 91 (153)
+..++..+|-++......++.+.. . .-.+. ...+..+.+.. ....||+|++|...| ..
T Consensus 113 ~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---------------~~~~fD~Ii~d~~~~~~~ 177 (296)
T 1inl_A 113 SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK---------------FKNEFDVIIIDSTDPTAG 177 (296)
T ss_dssp TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG---------------CSSCEEEEEEEC------
T ss_pred CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh---------------CCCCceEEEEcCCCcccC
Confidence 346899999999888887776642 1 11222 34444433221 134699999997554 11
Q ss_pred -----CHHHHHHHHHh
Q 042079 92 -----TGYELLKKIKE 102 (153)
Q Consensus 92 -----~g~~~~~~lr~ 102 (153)
...++++.+++
T Consensus 178 ~~~~l~~~~~l~~~~~ 193 (296)
T 1inl_A 178 QGGHLFTEEFYQACYD 193 (296)
T ss_dssp ----CCSHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHH
Confidence 22567777665
No 461
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=25.19 E-value=1.7e+02 Score=20.05 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccc---------------cCCCChhHHHHHHhhh
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFM---------------LKPLKPSDVKKLTGHL 151 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l---------------~KP~~~~~l~~~~~~~ 151 (153)
.+.++++++. .+++++.|+........-....|.+.++ .++++.+.+.+++..+
T Consensus 26 ~~al~~l~~~----G~~~~~aTGR~~~~~~~~~~~l~~~~~i~~nGa~i~~~~~~i~~~~~~~~~~~~i~~~~ 94 (258)
T 2pq0_A 26 IEAVRRLKQS----GVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPLRREKVRALTEEA 94 (258)
T ss_dssp HHHHHHHHHT----TCEEEEECSSCGGGSHHHHHHHTCCCEEEGGGTEEEETTEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCEEEEECCCChHHHHHHHHhcCCCEEEECCCCEEEECCEEEEEecCCHHHHHHHHHHH
Confidence 4456666653 4677777776544333223334443332 3678888888777654
No 462
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=25.13 E-value=1.1e+02 Score=20.75 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=62.2
Q ss_pred CCCCeEEEEeCCH--HHHHHHHHHHHhcCcEEEEecC-------HHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCC
Q 042079 18 PKPPHVLAVDDSI--VDRKIVENLLKNSACKVTTAEN-------GMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCM 88 (153)
Q Consensus 18 ~~~~~iLiidd~~--~~~~~l~~~l~~~~~~v~~~~~-------~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~ 88 (153)
.+.++|.|-.|+. ...+.+..+|+..|++|.-+.. ..+....+... -.......-++||....
T Consensus 18 ~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~--------V~~g~~d~GIliCGTGi 89 (169)
T 3ph3_A 18 GSHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEA--------VKSGECDRGIVICGTGL 89 (169)
T ss_dssp ---CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHH--------HHTTSSSEEEEEESSSH
T ss_pred CCCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHH--------HHcCCCCEEEEEcCCcH
Confidence 4567899988886 5567888999999998875431 11211111111 01123345677766422
Q ss_pred ---------CCCC-----HHHHHHHHHhccCCCCCcEEEEeCCCC-hhhHHHHHHhcCcccccCCCChhHHHHHHh
Q 042079 89 ---------PGMT-----GYELLKKIKESSVMKEVPVVVVSSENI-PTRINECLEEGAQMFMLKPLKPSDVKKLTG 149 (153)
Q Consensus 89 ---------~~~~-----g~~~~~~lr~~~~~~~~pii~~t~~~~-~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~ 149 (153)
|+.- -....+.-|+. ++..|+.+...-. .+...+. ++.||.-||...+-.+.+.
T Consensus 90 G~sIaANKv~GIRAAlc~d~~sA~~aR~h---NnANVL~lG~Rvig~~lA~~I----v~~fL~t~F~ggRh~~Rv~ 158 (169)
T 3ph3_A 90 GISIAANKVPGIRAAVCTNSYMARMSREH---NDANILALGERVVGLDLALDI----VDTWLKAEFQGGRHATRVG 158 (169)
T ss_dssp HHHHHHTTSTTCCEEECSSHHHHHHHHHT---TCCSEEEEETTTSCHHHHHHH----HHHHHHCCCCCTHHHHHHH
T ss_pred HHHHHhhcCCCeEEEEeCCHHHHHHHHHh---CCCcEEEEcccccCHHHHHHH----HHHHHcCCCCCCchHHHHH
Confidence 2210 11223344443 4678888887653 3333222 4568888888665544443
No 463
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=25.10 E-value=1.4e+02 Score=18.98 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=52.8
Q ss_pred CCCCeEEEEeC----CHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCH
Q 042079 18 PKPPHVLAVDD----SIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTG 93 (153)
Q Consensus 18 ~~~~~iLiidd----~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g 93 (153)
....+|.+|.- ...-...++ .|.+.||+++-++...+.+.-..... ....-...+|++++-. |....
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~-~L~~~G~~V~~vnp~~~~i~G~~~~~------s~~el~~~vDlvii~v--p~~~v 82 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILK-DLLSKGFEVLPVNPNYDEIEGLKCYR------SVRELPKDVDVIVFVV--PPKVG 82 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHH-HHHHTTCEEEEECTTCSEETTEECBS------SGGGSCTTCCEEEECS--CHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHH-HHHHCCCEEEEeCCCCCeECCeeecC------CHHHhCCCCCEEEEEe--CHHHH
Confidence 34567888887 333333444 45567888776664332111111010 0001123589888654 55556
Q ss_pred HHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCc
Q 042079 94 YELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQ 132 (153)
Q Consensus 94 ~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~ 132 (153)
.++++.+-+.. .. -+++.++....+....+.+.|+.
T Consensus 83 ~~v~~~~~~~g--~~-~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 83 LQVAKEAVEAG--FK-KLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp HHHHHHHHHTT--CC-EEEECTTSCCHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcC--CC-EEEEcCccHHHHHHHHHHHCCCE
Confidence 67777665533 12 24545555556666666677764
No 464
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=25.06 E-value=1.8e+02 Score=20.34 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=34.9
Q ss_pred cccEEEEeCCC--CCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 78 KVNLVITDYCM--PGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 78 ~~dlii~D~~~--~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
..|+|++|... ....-.++++.+++. .+++ +..-.+.+...++.+.|++..
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~----g~~v--~~~v~t~eea~~a~~~Gad~I 153 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHH----HLLT--MADCSSVDDGLACQRLGADII 153 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHT----TCEE--EEECCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHC----CCEE--EEeCCCHHHHHHHHhCCCCEE
Confidence 47899998764 224556788888763 3333 344457788888999999755
No 465
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=25.03 E-value=1.8e+02 Score=20.37 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=35.2
Q ss_pred cccEEEEeCCCCCCC-------HHHHHHHHHhccC--CCCCcEEEEeCCCChhhHHHHHHhcCcccccC
Q 042079 78 KVNLVITDYCMPGMT-------GYELLKKIKESSV--MKEVPVVVVSSENIPTRINECLEEGAQMFMLK 137 (153)
Q Consensus 78 ~~dlii~D~~~~~~~-------g~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~K 137 (153)
..|.|++=..-|+.. .++-++++|+... ..+++ |.+.+.-+.+...++.+.||+.++.-
T Consensus 128 ~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~-I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 128 KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCE-EEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCce-EEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 477776422233332 3555566664321 11344 45666667888889999999887665
No 466
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=25.02 E-value=1.8e+02 Score=21.48 Aligned_cols=89 Identities=25% Similarity=0.332 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhc-CcEEEEe------cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC-CCHHHHHHHHHh
Q 042079 31 VDRKIVENLLKNS-ACKVTTA------ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG-MTGYELLKKIKE 102 (153)
Q Consensus 31 ~~~~~l~~~l~~~-~~~v~~~------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~-~~g~~~~~~lr~ 102 (153)
......+.+++.. +..++.- .+..++++.+.. ..+|-|+..-.-+. .+|++.++++.+
T Consensus 139 iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~--------------lGvdrILTSG~~~~a~~Gl~~Lk~Lv~ 204 (287)
T 3iwp_A 139 IDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLT--------------LGFERVLTSGCDSSALEGLPLIKRLIE 204 (287)
T ss_dssp BCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHH--------------HTCSEEEECTTSSSTTTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHH--------------cCCCEEECCCCCCChHHhHHHHHHHHH
Confidence 3344455555542 3333322 246677776631 25889998665443 579999999875
Q ss_pred ccCCCCCcEEEEeCCCChhhHHHHHH-hcCcccc
Q 042079 103 SSVMKEVPVVVVSSENIPTRINECLE-EGAQMFM 135 (153)
Q Consensus 103 ~~~~~~~pii~~t~~~~~~~~~~a~~-~ga~~~l 135 (153)
... .+++| +..+.-..+.+.+..+ .|++.|-
T Consensus 205 ~a~-~rI~I-maGGGV~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 205 QAK-GRIVV-MPGGGITDRNLQRILEGSGATEFH 236 (287)
T ss_dssp HHT-TSSEE-EECTTCCTTTHHHHHHHHCCSEEE
T ss_pred HhC-CCCEE-EECCCcCHHHHHHHHHhhCCCEEe
Confidence 431 23443 3444456677777665 7887763
No 467
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=24.89 E-value=1.8e+02 Score=20.38 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEE-ecCHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTT-AENGMR 55 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~-~~~~~~ 55 (153)
+..++||.....-....+...|.+.|+.|.. ..+...
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~ 48 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTK 48 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4578899998888888888777778888765 445443
No 468
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=24.75 E-value=2.3e+02 Score=21.53 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=60.2
Q ss_pred CCCeEEEEeCC--HHH---HHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhH---Hhh----hhcccCCCcccEEEEeC
Q 042079 19 KPPHVLAVDDS--IVD---RKIVENLLKNSACKVTTAENGMRALEFLGLVDEQ---EQQ----NNLNSNGTKVNLVITDY 86 (153)
Q Consensus 19 ~~~~iLiidd~--~~~---~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~---~~~----~~~~~~~~~~dlii~D~ 86 (153)
+..+|+||... +.. ...+..+|.+.|+.|..-....+.+......... ... .....-...+|++|+=
T Consensus 37 ~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~l- 115 (365)
T 3pfn_A 37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICL- 115 (365)
T ss_dssp CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEE-
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEEE-
Confidence 34679998753 333 3455566767788887655444432211000000 000 0001123467888752
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhh
Q 042079 87 CMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHL 151 (153)
Q Consensus 87 ~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~ 151 (153)
+.|| .+++..+... ...+||+-+.. |-.+||. +++++++.+.+.++
T Consensus 116 ---GGDG-T~L~aa~~~~-~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~v 161 (365)
T 3pfn_A 116 ---GGDG-TLLYASSLFQ-GSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQV 161 (365)
T ss_dssp ---SSTT-HHHHHHHHCS-SSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHH
T ss_pred ---cChH-HHHHHHHHhc-cCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHH
Confidence 4455 4555555422 23578887763 5667876 77778887777665
No 469
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=24.72 E-value=1.4e+02 Score=19.16 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=23.7
Q ss_pred CCcccEEEEeCC----CC-CCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHH
Q 042079 76 GTKVNLVITDYC----MP-GMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECL 127 (153)
Q Consensus 76 ~~~~dlii~D~~----~~-~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~ 127 (153)
+.++|+||.=.. .| ..|++.+.+.--. .++|+ +|+........+++
T Consensus 72 ~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~----~~IP~--~T~latA~a~v~al 122 (134)
T 2xw6_A 72 EGRILAVIFFRDPLTAQPHEPDVQALLRVCDV----HGVPL--ATNPMAAEALIPWL 122 (134)
T ss_dssp TTCEEEEEEECCTTTCCTTSCCSHHHHHHHHH----HTCCE--ECSHHHHHHHHHHH
T ss_pred CCCccEEEEccCcccCCCccchHHHHHHHHHH----cCCCe--EcCHHHHHHHHHHH
Confidence 356788876443 34 4566655544332 24665 45444444444444
No 470
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=24.69 E-value=1.8e+02 Score=20.27 Aligned_cols=72 Identities=7% Similarity=0.074 Sum_probs=48.5
Q ss_pred hcCcEEE-EecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC--CCHHHHHHHHHhccCCCCCcEEEEeCCC
Q 042079 42 NSACKVT-TAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG--MTGYELLKKIKESSVMKEVPVVVVSSEN 118 (153)
Q Consensus 42 ~~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~--~~g~~~~~~lr~~~~~~~~pii~~t~~~ 118 (153)
..|..+. -+.+..|+.... ....|++-+ .|. .-|.+.++.++.. .+++|++.+.+ -
T Consensus 117 ~~g~~~i~G~~t~~e~~~A~---------------~~Gad~vk~---FPa~~~~G~~~lk~i~~~--~~~ipvvaiGG-I 175 (225)
T 1mxs_A 117 DSEIPLLPGISTPSEIMMGY---------------ALGYRRFKL---FPAEISGGVAAIKAFGGP--FGDIRFCPTGG-V 175 (225)
T ss_dssp HCSSCEECEECSHHHHHHHH---------------TTTCCEEEE---TTHHHHTHHHHHHHHHTT--TTTCEEEEBSS-C
T ss_pred HhCCCEEEeeCCHHHHHHHH---------------HCCCCEEEE---ccCccccCHHHHHHHHhh--CCCCeEEEECC-C
Confidence 3444333 478888887765 245788876 553 2378889999863 35788875554 4
Q ss_pred ChhhHHHHHH-hcCccc
Q 042079 119 IPTRINECLE-EGAQMF 134 (153)
Q Consensus 119 ~~~~~~~a~~-~ga~~~ 134 (153)
+.+.+.+.+. .|++.+
T Consensus 176 ~~~N~~~~l~~~Ga~~v 192 (225)
T 1mxs_A 176 NPANVRNYMALPNVMCV 192 (225)
T ss_dssp CTTTHHHHHHSTTBCCE
T ss_pred CHHHHHHHHhccCCEEE
Confidence 6777888899 688765
No 471
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=24.66 E-value=48 Score=22.77 Aligned_cols=32 Identities=22% Similarity=0.061 Sum_probs=24.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcC-cEEEEe
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSA-CKVTTA 50 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~-~~v~~~ 50 (153)
+.++|||..........+...|...| +.|...
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~ 54 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLF 54 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEE
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEE
Confidence 34679999988888888887777777 776543
No 472
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=24.60 E-value=97 Score=23.21 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMF 134 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~ 134 (153)
.+++++.+++.. +++|||.-..-.+.+.+.++++ |++..
T Consensus 184 ~~~~i~~ik~~~--~~iPVianGgI~s~eda~~~l~-GaD~V 222 (350)
T 3b0p_A 184 RHDWVHRLKGDF--PQLTFVTNGGIRSLEEALFHLK-RVDGV 222 (350)
T ss_dssp CHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHT-TSSEE
T ss_pred cHHHHHHHHHhC--CCCeEEEECCcCCHHHHHHHHh-CCCEE
Confidence 367888888753 4789987777678888888887 88653
No 473
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=24.59 E-value=1.2e+02 Score=21.06 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
++++.+++.. .+|+++-..-.+++.+..+++.|++....
T Consensus 65 ~~i~~i~~~~---~ipv~v~ggI~~~~~~~~~l~~Gad~V~l 103 (244)
T 1vzw_A 65 ALIAEVAQAM---DIKVELSGGIRDDDTLAAALATGCTRVNL 103 (244)
T ss_dssp HHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhc---CCcEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 7788888643 67888765556777888899999987654
No 474
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=24.58 E-value=1.8e+02 Score=20.26 Aligned_cols=88 Identities=9% Similarity=-0.013 Sum_probs=50.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcE-EEEe-cCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHH
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACK-VTTA-ENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYEL 96 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~-v~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~ 96 (153)
+..+|..+|-++......+...+..+.. +... .+..+ +.... .....||+|++.... +--.+
T Consensus 103 ~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~-~~~~~------------~~~~~fD~I~s~a~~---~~~~l 166 (249)
T 3g89_A 103 PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEV-LAREA------------GHREAYARAVARAVA---PLCVL 166 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHH-HTTST------------TTTTCEEEEEEESSC---CHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHH-hhccc------------ccCCCceEEEECCcC---CHHHH
Confidence 4568999999999998888887766642 4433 33322 21100 012579999997532 23455
Q ss_pred HHHHHhccCCCCCcEEEEeCCCChhhH
Q 042079 97 LKKIKESSVMKEVPVVVVSSENIPTRI 123 (153)
Q Consensus 97 ~~~lr~~~~~~~~pii~~t~~~~~~~~ 123 (153)
++.+...- .+...++++.+....+..
T Consensus 167 l~~~~~~L-kpgG~l~~~~g~~~~~e~ 192 (249)
T 3g89_A 167 SELLLPFL-EVGGAAVAMKGPRVEEEL 192 (249)
T ss_dssp HHHHGGGE-EEEEEEEEEECSCCHHHH
T ss_pred HHHHHHHc-CCCeEEEEEeCCCcHHHH
Confidence 66554322 134456666665444433
No 475
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=24.57 E-value=1.2e+02 Score=20.85 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=32.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhH----HHHHHhcCccc--ccCCCChhHHHHHH
Q 042079 81 LVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRI----NECLEEGAQMF--MLKPLKPSDVKKLT 148 (153)
Q Consensus 81 lii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~----~~a~~~ga~~~--l~KP~~~~~l~~~~ 148 (153)
-+++|+.+-+ .+-.+++.+.+.+ .-++.+-.....+.. ..+.+.|.... +..|.+++++.++.
T Consensus 61 ~i~ld~~l~d-~p~~~~~~~~~aG----ad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~~~ 129 (218)
T 3jr2_A 61 ILVCDMKTTD-GGAILSRMAFEAG----ADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWV 129 (218)
T ss_dssp EEEEEEEECS-CHHHHHHHHHHHT----CSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHH
T ss_pred cEEEEEeecc-cHHHHHHHHHhcC----CCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHHHH
Confidence 3556765542 3455667666543 334444433332222 23445666543 66777776666554
No 476
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=24.52 E-value=1.4e+02 Score=21.90 Aligned_cols=59 Identities=27% Similarity=0.238 Sum_probs=42.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGM 91 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~ 91 (153)
....+++|+.......+-+..+|...|..|+.+++...-+... -...|++|.-..-|..
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~---------------~~~ADIVI~Avg~p~~ 217 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSH---------------TTKADILIVAVGKPNF 217 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHH---------------HTTCSEEEECCCCTTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHh---------------cccCCEEEECCCCCCC
Confidence 3568999999988888888889988899888886532222211 1347999988766543
No 477
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=24.46 E-value=1e+02 Score=22.67 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=33.8
Q ss_pred CCcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcC-cccccCCCC--hhHHHHHHh
Q 042079 76 GTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGA-QMFMLKPLK--PSDVKKLTG 149 (153)
Q Consensus 76 ~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga-~~~l~KP~~--~~~l~~~~~ 149 (153)
..++|+|++|.... +|...++..+... + -+.+.+.++.|. -.|+.|=+. -.+..+++.
T Consensus 154 ~~~~DvVLSDmApn--sG~~~~D~~rs~~------L--------L~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~ 214 (282)
T 3gcz_A 154 VIPGDTLLCDIGES--SPSIAVEEQRTLR------V--------LNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELS 214 (282)
T ss_dssp CCCCSEEEECCCCC--CSCHHHHHHHHHH------H--------HHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHH
T ss_pred CCCcCEEEecCccC--CCChHHHHHHHHH------H--------HHHHHHHcCCCCCCcEEEEEecCCCccHHHHHH
Confidence 46799999997544 6666666655422 1 244455566553 457777666 344444433
No 478
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=24.33 E-value=2.2e+02 Score=21.72 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHhccCCC----------CCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 90 GMTGYELLKKIKESSVMK----------EVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 90 ~~~g~~~~~~lr~~~~~~----------~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
.++.-+|++++++....+ .+.-|.+.+....+...+|...|||-|++--++-.+.....
T Consensus 251 p~tl~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~GsG~~~i~~a~~~gaDvyITGD~~~H~~~~A~ 319 (370)
T 2nyd_A 251 QMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGSGIGYEYQAVQQGADVFVTGDIKHHDALDAK 319 (370)
T ss_dssp EEEHHHHHHHHHHHTTCSCCEEESCTTCEEEEEEECCSCCTTSHHHHHHTTCSEEEESCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCceEEecCCCCcccEEEEEcCCCHHHHHHHHHcCCCEEEeCCccHHHHHHHH
Confidence 366778888887543211 13335555555667788899999999999999887766554
No 479
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=24.32 E-value=1.3e+02 Score=21.29 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHhccCC----------CCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHH
Q 042079 90 GMTGYELLKKIKESSVM----------KEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLT 148 (153)
Q Consensus 90 ~~~g~~~~~~lr~~~~~----------~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~ 148 (153)
.++.-+|++++++.... ..+.-|.+.+....+...+|.+.|+|.|++--++......+.
T Consensus 136 ~~t~~~l~~~vk~~l~~~~~~~g~~~~~~i~~VAv~~GsG~~~~~~a~~~gaD~~iTGd~~~h~~~~a~ 204 (247)
T 1nmo_A 136 PVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAR 204 (247)
T ss_dssp EECHHHHHHHHHHHHTSCCEEECTTSCSSEEEEEECSSSCGGGHHHHHHHCCSEEEESCCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHcCCCeEEECCCCcCccCEEEEECCCcHHHHHHHHHcCCCEEEEcCccHHHHHHHH
Confidence 46777888877643211 123445555555667788899999999999998887665543
No 480
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.18 E-value=1.8e+02 Score=20.19 Aligned_cols=18 Identities=6% Similarity=0.008 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCcEEEEec
Q 042079 34 KIVENLLKNSACKVTTAE 51 (153)
Q Consensus 34 ~~l~~~l~~~~~~v~~~~ 51 (153)
..+...+++.||.+..+.
T Consensus 31 ~gi~~~a~~~g~~~~~~~ 48 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSA 48 (289)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 445555667788766543
No 481
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=23.92 E-value=1.1e+02 Score=21.50 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=51.2
Q ss_pred HHHHhcCcEEEE--ecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC----CCHHHHHHHHHhccCCCCCcE
Q 042079 38 NLLKNSACKVTT--AENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG----MTGYELLKKIKESSVMKEVPV 111 (153)
Q Consensus 38 ~~l~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~----~~g~~~~~~lr~~~~~~~~pi 111 (153)
..|+..|+.+.. +.++...+..+. .-++|.|=+|-.+-. .....+++.+-.......+.+
T Consensus 160 ~~L~~~G~~ialDDfG~g~ssl~~L~--------------~l~~d~iKiD~~~v~~~~~~~~~~~l~~ii~~~~~~~~~v 225 (268)
T 3hv8_A 160 QGLATLHCQAAISQFGCSLNPFNALK--------------HLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLS 225 (268)
T ss_dssp HHHHHTTCEEEEEEETCSSSTTGGGG--------------TCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHCCCEEEEeCCCCChHHHHHHH--------------hCCCCEEEECHHHHHhhhcChhHHHHHHHHHHHHHcCCCE
Confidence 345667876653 444444445442 356899999954422 123344444322111123444
Q ss_pred EEEeCCCChhhHHHHHHhcCc---c-cccCCCChhHH
Q 042079 112 VVVSSENIPTRINECLEEGAQ---M-FMLKPLKPSDV 144 (153)
Q Consensus 112 i~~t~~~~~~~~~~a~~~ga~---~-~l~KP~~~~~l 144 (153)
| ..+-.+.+....+.+.|++ + |+.||....++
T Consensus 226 i-aeGVEt~~~~~~l~~lG~~~~QG~~~~~P~~~~~~ 261 (268)
T 3hv8_A 226 I-VPFVESASVLATLWQAGATYIQGYYLQGPSQAMDY 261 (268)
T ss_dssp E-ECCCCSHHHHHHHHHHTCSEECSTTTCCCBSSCCC
T ss_pred E-EEeeCCHHHHHHHHHcCCCEeccCeecCCCccccC
Confidence 3 4566677777788888874 4 47788776543
No 482
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=23.77 E-value=2.1e+02 Score=20.69 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHHHHhhhc
Q 042079 108 EVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKKLTGHLI 152 (153)
Q Consensus 108 ~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~~~~~~~ 152 (153)
.+|+|........ .+..+.| .+++..| +.+++.+.+.+++
T Consensus 301 G~PvI~~~~~~~~---~e~v~~g-~g~lv~~-d~~~la~~i~~ll 340 (384)
T 1vgv_A 301 GKPVLVMRDTTER---PEAVTAG-TVRLVGT-DKQRIVEEVTRLL 340 (384)
T ss_dssp TCCEEEESSCCSC---HHHHHHT-SEEEECS-SHHHHHHHHHHHH
T ss_pred CCCEEEccCCCCc---chhhhCC-ceEEeCC-CHHHHHHHHHHHH
Confidence 5788865431222 2335667 7888877 9999988777654
No 483
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=23.74 E-value=1.8e+02 Score=19.83 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=19.0
Q ss_pred CCcccEEEEeCC----CC-CCCHHHHHHHHHhccCCCCCcE
Q 042079 76 GTKVNLVITDYC----MP-GMTGYELLKKIKESSVMKEVPV 111 (153)
Q Consensus 76 ~~~~dlii~D~~----~~-~~~g~~~~~~lr~~~~~~~~pi 111 (153)
+..+|+||.=.. .| ..||+.+.+.--. .++|+
T Consensus 96 ~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~----~~IP~ 132 (178)
T 1vmd_A 96 EGKIDVLIFFWDPLEPQAHDVDVKALIRIATV----YNIPV 132 (178)
T ss_dssp TTSCCEEEEECCSSSCCTTSCCHHHHHHHHHH----TTCCE
T ss_pred CCCccEEEEccCccCCCcccccHHHHHHHHHH----cCCCE
Confidence 456888887443 44 5677665554332 36776
No 484
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=23.73 E-value=1.8e+02 Score=20.00 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=36.2
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCcccccCCCChhHHHH
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFMLKPLKPSDVKK 146 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~KP~~~~~l~~ 146 (153)
.++++=+. +...++.+.++.+++.. +.. ++-...--..+....|++.|++.. +-|-...++.+
T Consensus 41 Gv~~iel~--~k~~~~~~~i~~l~~~~--~~~-~vgagtvi~~d~~~~A~~aGAd~v-~~p~~d~~v~~ 103 (214)
T 1wbh_A 41 GVRVLNVT--LRTECAVDAIRAIAKEV--PEA-IVGAGTVLNPQQLAEVTEAGAQFA-ISPGLTEPLLK 103 (214)
T ss_dssp TCCEEEEE--SCSTTHHHHHHHHHHHC--TTS-EEEEESCCSHHHHHHHHHHTCSCE-EESSCCHHHHH
T ss_pred CCCEEEEe--CCChhHHHHHHHHHHHC--cCC-EEeeCEEEEHHHHHHHHHcCCCEE-EcCCCCHHHHH
Confidence 45665555 34556788888777643 232 332322335577778889998744 45544444433
No 485
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=23.50 E-value=1.6e+02 Score=20.15 Aligned_cols=25 Identities=12% Similarity=-0.058 Sum_probs=16.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC
Q 042079 20 PPHVLAVDDSIVDRKIVENLLKNSA 44 (153)
Q Consensus 20 ~~~iLiidd~~~~~~~l~~~l~~~~ 44 (153)
..++..+|-++......+..++..+
T Consensus 118 ~~~v~~~D~~~~~~~~a~~~~~~~~ 142 (255)
T 3mb5_A 118 EGRVVSYEIREDFAKLAWENIKWAG 142 (255)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEecCHHHHHHHHHHHHHcC
Confidence 4567777777777777666665544
No 486
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=23.48 E-value=1.3e+02 Score=20.80 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 95 ELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 95 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
+.++.+++.. .+|+++-..-.+++.+..+++.|++....
T Consensus 64 ~~i~~i~~~~---~ipv~v~ggi~~~~~~~~~l~~Gad~V~l 102 (244)
T 2y88_A 64 ELLAEVVGKL---DVQVELSGGIRDDESLAAALATGCARVNV 102 (244)
T ss_dssp HHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888743 67888765556777888899999987654
No 487
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=23.44 E-value=1.2e+02 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=24.0
Q ss_pred CeEEEEeCCH--HHHHHHHHHHHhcCcEEEEec
Q 042079 21 PHVLAVDDSI--VDRKIVENLLKNSACKVTTAE 51 (153)
Q Consensus 21 ~~iLiidd~~--~~~~~l~~~l~~~~~~v~~~~ 51 (153)
++|.|..|+. ...+.+..+|+..|++|.-+.
T Consensus 4 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G 36 (162)
T 2vvp_A 4 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCG 36 (162)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHTTCEEEECS
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 6788888876 456778889999999887553
No 488
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=23.43 E-value=1.2e+02 Score=22.31 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=28.4
Q ss_pred CCcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 108 EVPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 108 ~~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
++=+|+++.+. ..+...+|++.|.+-|+-||+ +.++.++++.
T Consensus 94 ~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~ 139 (393)
T 4fb5_A 94 EVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLA 139 (393)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhh
Confidence 34344454443 366678899999999999995 4555555554
No 489
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=23.36 E-value=90 Score=23.02 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=41.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCC
Q 042079 18 PKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPG 90 (153)
Q Consensus 18 ~~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~ 90 (153)
....+++|+.......+-+..+|.+.|..|+.+++...-+... -...|+||.-..-|.
T Consensus 157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~---------------~~~ADIVI~Avg~p~ 214 (288)
T 1b0a_A 157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH---------------VENADLLIVAVGKPG 214 (288)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH---------------HHHCSEEEECSCCTT
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHH---------------hccCCEEEECCCCcC
Confidence 3568999999998888889999998898888887444322211 023688888776665
No 490
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=23.26 E-value=1.6e+02 Score=19.11 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeC
Q 042079 19 KPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDY 86 (153)
Q Consensus 19 ~~~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~ 86 (153)
+..+|.+...... ..++++.+..+..+.+..+++..+. ....|+++.+.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~--------------~g~~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQ--------------TKKADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHH--------------TTSSSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHH--------------cCCCCEEEecH
Confidence 4567877776652 3445556888888999999999883 46789999873
No 491
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.24 E-value=2.1e+02 Score=20.54 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCcEEEEecC---HHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHHHHHhccCCCC
Q 042079 32 DRKIVENLLKNSACKVTTAEN---GMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKE 108 (153)
Q Consensus 32 ~~~~l~~~l~~~~~~v~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~ 108 (153)
....+...+++.||.+..+.. ...-.+.+... ....+|-||+-... .+ .+.++.+++. .
T Consensus 86 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdGiIi~~~~--~~-~~~~~~l~~~----~ 147 (344)
T 3kjx_A 86 VLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEM-----------LSWRPSGVIIAGLE--HS-EAARAMLDAA----G 147 (344)
T ss_dssp HHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHH-----------HTTCCSEEEEECSC--CC-HHHHHHHHHC----S
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-----------HhCCCCEEEEECCC--CC-HHHHHHHHhC----C
Confidence 345566667778998776543 22212222110 13457777764211 12 2556666652 5
Q ss_pred CcEEEE
Q 042079 109 VPVVVV 114 (153)
Q Consensus 109 ~pii~~ 114 (153)
+|+|++
T Consensus 148 iPvV~i 153 (344)
T 3kjx_A 148 IPVVEI 153 (344)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 677777
No 492
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=23.11 E-value=1.5e+02 Score=21.86 Aligned_cols=41 Identities=20% Similarity=0.446 Sum_probs=26.2
Q ss_pred CcEEEEeCCC--ChhhHHHHHHhcCcccccCCC--ChhHHHHHHh
Q 042079 109 VPVVVVSSEN--IPTRINECLEEGAQMFMLKPL--KPSDVKKLTG 149 (153)
Q Consensus 109 ~pii~~t~~~--~~~~~~~a~~~ga~~~l~KP~--~~~~l~~~~~ 149 (153)
+=+|+++.+. ..+...+|++.|..-|+-||+ +.++.++++.
T Consensus 66 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~ 110 (358)
T 3gdo_A 66 IELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKR 110 (358)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHH
Confidence 3344444433 356667788899888888984 5566666554
No 493
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=23.06 E-value=2.1e+02 Score=20.48 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=43.5
Q ss_pred CcccEEEEe----CC--CCCC-CHHHHHHHHHhccCCCCCcEEEEeCCCCh------hhHHHHHHhcCccc-ccCC----
Q 042079 77 TKVNLVITD----YC--MPGM-TGYELLKKIKESSVMKEVPVVVVSSENIP------TRINECLEEGAQMF-MLKP---- 138 (153)
Q Consensus 77 ~~~dlii~D----~~--~~~~-~g~~~~~~lr~~~~~~~~pii~~t~~~~~------~~~~~a~~~ga~~~-l~KP---- 138 (153)
...+++++. +. -+.. -.+..+..+++.. .+|||+.+++... .....|...|++++ +-|-
T Consensus 157 Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~---~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~~d 233 (262)
T 1zco_A 157 GNENVILCERGIRTFETATRFTLDISAVPVVKELS---HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPE 233 (262)
T ss_dssp TCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB---SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSSGG
T ss_pred CCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh---CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcc
Confidence 446788877 31 1111 1234555666542 5788888876532 44566888999853 2222
Q ss_pred ---------CChhHHHHHHhhh
Q 042079 139 ---------LKPSDVKKLTGHL 151 (153)
Q Consensus 139 ---------~~~~~l~~~~~~~ 151 (153)
++++++.+++..+
T Consensus 234 ~al~D~~~sl~p~~~~~l~~~i 255 (262)
T 1zco_A 234 KALSDSQQQLTFDDFLQLLKEL 255 (262)
T ss_dssp GCSSCTTTCBCHHHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHHH
Confidence 6788888887765
No 494
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=23.06 E-value=2.8e+02 Score=21.88 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=29.7
Q ss_pred CcccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhcCccccc
Q 042079 77 TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEGAQMFML 136 (153)
Q Consensus 77 ~~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~ga~~~l~ 136 (153)
.+.+.+++ . ..+......+..+|+.. .+++++-+. +++........|++..+.
T Consensus 191 ~~a~~vi~-t-~~D~~n~~~~~~ar~~~---~~~iiar~~--~~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 191 AAARSIIA-N-LSDPDNANLCLTVRSLC---QTPIIAVVK--EPVHGELLRLAGANQVVP 243 (565)
T ss_dssp GGCSEEEE-C-SCHHHHHHHHHHHHTTC---CCCEEEECS--SGGGHHHHHHHTCSEEEC
T ss_pred ccCCEEEE-e-CCcHHHHHHHHHHHHhc---CceEEEEEC--CHHHHHHHHHcCCCEEEC
Confidence 35677776 2 23322333444455432 667776654 455556677889986553
No 495
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=23.02 E-value=93 Score=23.27 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-Ccc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQM 133 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~~ 133 (153)
..++++.+++.. .+|||....-.+.+.+.++++.| +|.
T Consensus 276 ~~~~~~~ir~~~---~iPVi~~Ggi~t~e~a~~~l~~G~aD~ 314 (349)
T 3hgj_A 276 QVPFADAVRKRV---GLRTGAVGLITTPEQAETLLQAGSADL 314 (349)
T ss_dssp THHHHHHHHHHH---CCEEEECSSCCCHHHHHHHHHTTSCSE
T ss_pred cHHHHHHHHHHc---CceEEEECCCCCHHHHHHHHHCCCceE
Confidence 467888888753 67887666556788889999998 543
No 496
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=22.96 E-value=91 Score=20.94 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=22.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCcEEEEecC
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSACKVTTAEN 52 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~~~v~~~~~ 52 (153)
++|+|+|........+...|++.|+.+..+.+
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~ 34 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD 34 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC
Confidence 67899974423334567788888988887764
No 497
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=22.96 E-value=96 Score=23.36 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=28.5
Q ss_pred HHHHHHHHHhccCCCCCcEEEEeCCCChhhHHHHHHhc-Cc
Q 042079 93 GYELLKKIKESSVMKEVPVVVVSSENIPTRINECLEEG-AQ 132 (153)
Q Consensus 93 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~a~~~g-a~ 132 (153)
..++++.+++.. .+|||....-.+.+.+.++++.| +|
T Consensus 283 ~~~~~~~ir~~~---~iPVi~~GgI~s~e~a~~~l~~G~aD 320 (363)
T 3l5l_A 283 MGPIAERVRREA---KLPVTSAWGFGTPQLAEAALQANQLD 320 (363)
T ss_dssp THHHHHHHHHHH---TCCEEECSSTTSHHHHHHHHHTTSCS
T ss_pred hHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHCCCcc
Confidence 467888888753 68888776666788899999998 54
No 498
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=22.88 E-value=2.3e+02 Score=21.39 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=34.0
Q ss_pred cccEEEEeCCCCCCCHHHHHHHHHhccCCCCCcEEEEeCC--CChhhHHHHHHhcCcccc-cCC
Q 042079 78 KVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSE--NIPTRINECLEEGAQMFM-LKP 138 (153)
Q Consensus 78 ~~dlii~D~~~~~~~g~~~~~~lr~~~~~~~~pii~~t~~--~~~~~~~~a~~~ga~~~l-~KP 138 (153)
.+++.+++-=++..+-.+.++.+++.. .+||. +.+ .+.....++++.|+.+++ .|+
T Consensus 234 ~~~~~~iEeP~~~~~d~~~~~~l~~~~---~ipIa--~dE~~~~~~~~~~~i~~~a~d~i~~d~ 292 (388)
T 4h83_A 234 DLNIRWFEEPVEWHNDKRSMRDVRYQG---SVPVC--AGQTEFSASGCRDLMETGAIDVCNFDS 292 (388)
T ss_dssp TSCCCCEESCBCSTTHHHHHHHHHHHS---SSCEE--ECTTCSSHHHHHHHHHHTCCSEECCCG
T ss_pred hcCcceeecCcccccchHHHHHHHhhc---CCCcc--CCccccChHhHHHHHHcCCCCeEeecc
Confidence 355555554444445566677777643 56763 333 356677788888877765 444
No 499
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=22.85 E-value=1.8e+02 Score=19.69 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=48.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--cEEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEEEeCCCCCCCHHHHHH
Q 042079 21 PHVLAVDDSIVDRKIVENLLKNSA--CKVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVITDYCMPGMTGYELLK 98 (153)
Q Consensus 21 ~~iLiidd~~~~~~~l~~~l~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii~D~~~~~~~g~~~~~ 98 (153)
..+++.++|+...+.++...+++| |.+. ..+....+..- .=.++-+.|-+.+--+++.
T Consensus 34 ~~iil~~~D~~v~esv~dV~~rwGG~F~ve-~~~w~~~i~~w-------------------~G~VVHLTMYG~~i~dvi~ 93 (178)
T 2o3a_A 34 KGIYFDTEDKSVFESVRDVVERWGGDFFIK-AVSWKKLLREF-------------------DGLKVHLTMYGIPLPQKLE 93 (178)
T ss_dssp SEEEESSCCHHHHHHHHHHHHHHCSCCEEE-ECCHHHHHHHC-------------------CSEEEEEEEEEEEHHHHHH
T ss_pred CeeEEeCCCHHHHHHHHHHHHhcCCceEEE-ecCHHHHHHHc-------------------CCEEEEEecCCCchHHHHH
Confidence 468999999999999999999876 6777 77777766533 3366667777777788889
Q ss_pred HHHh
Q 042079 99 KIKE 102 (153)
Q Consensus 99 ~lr~ 102 (153)
.||.
T Consensus 94 ~Ir~ 97 (178)
T 2o3a_A 94 EIKR 97 (178)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 9985
No 500
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=22.82 E-value=1.4e+02 Score=21.10 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHhcCc--EEEEecCHHHHHHHhchhhhHHhhhhcccCCCcccEEE--Ee-CCCCCCCHHHHHHHHHhccC--CCCCcE
Q 042079 39 LLKNSAC--KVTTAENGMRALEFLGLVDEQEQQNNLNSNGTKVNLVI--TD-YCMPGMTGYELLKKIKESSV--MKEVPV 111 (153)
Q Consensus 39 ~l~~~~~--~v~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~dlii--~D-~~~~~~~g~~~~~~lr~~~~--~~~~pi 111 (153)
.|+..|+ .++.+-+..+++.... -..++|= ++ +...+.+|.++++.+.+... ..+ ..
T Consensus 99 ~L~~~GI~vn~TlifS~~QA~~Aa~---------------AGa~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~~-T~ 162 (223)
T 3s1x_A 99 TLSSEHINTNCTLVFNPIQALLAAK---------------AGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIK-TQ 162 (223)
T ss_dssp HHHHTTCCEEEEEECSHHHHHHHHH---------------TTCSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTCC-SE
T ss_pred HHHHCCCcEEEEEeCCHHHHHHHHH---------------cCCeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCC-CE
Confidence 3455564 5667788888876552 1234442 11 11124578888877753211 123 34
Q ss_pred EEEeCCCChhhHHHHHHhcCcccccCC
Q 042079 112 VVVSSENIPTRINECLEEGAQMFMLKP 138 (153)
Q Consensus 112 i~~t~~~~~~~~~~a~~~ga~~~l~KP 138 (153)
|+.++-.+..+..++...|++..-..|
T Consensus 163 IlaAS~Rn~~~v~~aa~~G~d~~Tip~ 189 (223)
T 3s1x_A 163 ILVASIRNPIHVLRSAVIGADVVTVPF 189 (223)
T ss_dssp EEEBSCCSHHHHHHHHHHTCSEEEECH
T ss_pred EEEEeCCCHHHHHHHHHcCCCEEEeCH
Confidence 556667788889999999999754433
Done!