Query 042081
Match_columns 422
No_of_seqs 313 out of 2385
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.8E-61 1.5E-65 505.8 30.0 404 4-420 42-518 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 8.4E-41 1.8E-45 317.7 13.3 240 110-355 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 3.1E-33 6.6E-38 309.4 25.7 263 109-406 188-506 (1153)
4 PRK04841 transcriptional regul 99.2 2.1E-09 4.6E-14 118.1 21.3 259 114-403 19-333 (903)
5 PRK00411 cdc6 cell division co 99.1 4.6E-08 1E-12 97.2 25.3 279 109-393 34-376 (394)
6 TIGR02928 orc1/cdc6 family rep 99.0 2.1E-07 4.5E-12 91.5 25.6 112 109-222 19-140 (365)
7 COG2909 MalT ATP-dependent tra 98.9 8.5E-08 1.9E-12 99.0 19.5 262 114-404 24-340 (894)
8 PF13401 AAA_22: AAA domain; P 98.7 4.8E-08 1E-12 81.1 7.4 116 127-250 3-125 (131)
9 PF05729 NACHT: NACHT domain 98.7 6.1E-08 1.3E-12 83.7 7.7 115 129-253 1-132 (166)
10 TIGR03015 pepcterm_ATPase puta 98.7 8E-07 1.7E-11 83.5 15.5 114 109-233 27-145 (269)
11 cd00009 AAA The AAA+ (ATPases 98.6 6.4E-07 1.4E-11 75.1 11.9 124 109-252 2-131 (151)
12 TIGR00635 ruvB Holliday juncti 98.6 1E-06 2.2E-11 84.5 14.3 243 109-378 8-290 (305)
13 cd01128 rho_factor Transcripti 98.5 1.3E-07 2.7E-12 87.3 6.0 93 128-221 16-113 (249)
14 PF13173 AAA_14: AAA domain 98.5 2.7E-07 5.9E-12 76.5 7.1 102 128-255 2-103 (128)
15 PRK00080 ruvB Holliday junctio 98.5 3.7E-06 8E-11 81.4 15.1 244 109-378 29-311 (328)
16 PF13191 AAA_16: AAA ATPase do 98.4 3.6E-07 7.7E-12 80.5 6.2 43 109-151 4-47 (185)
17 PRK09376 rho transcription ter 98.4 2.5E-07 5.4E-12 89.2 5.4 104 116-221 158-266 (416)
18 PTZ00112 origin recognition co 98.3 0.00019 4.1E-09 75.7 24.0 110 109-221 759-879 (1164)
19 PTZ00202 tuzin; Provisional 98.3 5.2E-05 1.1E-09 74.0 16.9 132 109-253 266-403 (550)
20 PF01637 Arch_ATPase: Archaeal 98.2 7.2E-06 1.6E-10 74.8 8.7 41 109-151 3-43 (234)
21 TIGR00767 rho transcription te 98.2 6.1E-06 1.3E-10 80.1 8.0 93 128-221 168-265 (415)
22 COG1474 CDC6 Cdc6-related prot 98.1 1.8E-05 3.8E-10 77.3 10.7 107 109-221 21-133 (366)
23 PRK05564 DNA polymerase III su 98.0 0.00012 2.6E-09 70.4 14.0 122 109-252 8-134 (313)
24 PRK12402 replication factor C 97.9 7.9E-05 1.7E-09 72.3 11.5 40 109-150 19-58 (337)
25 PRK13342 recombination factor 97.9 5.5E-05 1.2E-09 75.6 9.9 105 109-246 16-124 (413)
26 PRK06893 DNA replication initi 97.9 1.9E-05 4.2E-10 72.3 5.6 37 128-166 39-75 (229)
27 TIGR03420 DnaA_homol_Hda DnaA 97.9 3.5E-05 7.7E-10 70.3 7.2 41 109-151 21-61 (226)
28 KOG2543 Origin recognition com 97.8 0.00012 2.5E-09 69.8 10.2 108 109-221 10-125 (438)
29 TIGR02903 spore_lon_C ATP-depe 97.8 7.7E-05 1.7E-09 78.0 9.8 141 109-251 158-334 (615)
30 PRK08116 hypothetical protein; 97.8 0.00014 3E-09 68.1 10.5 104 129-251 115-221 (268)
31 smart00382 AAA ATPases associa 97.8 0.0002 4.4E-09 59.1 9.8 87 128-222 2-89 (148)
32 PRK14961 DNA polymerase III su 97.8 0.00047 1E-08 67.7 13.5 134 109-250 20-158 (363)
33 COG3903 Predicted ATPase [Gene 97.8 4.1E-05 8.9E-10 73.7 5.7 257 127-404 13-316 (414)
34 PRK14960 DNA polymerase III su 97.7 0.0017 3.8E-08 67.1 17.5 135 109-251 19-158 (702)
35 PHA02544 44 clamp loader, smal 97.7 0.00031 6.7E-09 67.6 11.5 116 109-251 25-141 (316)
36 PRK14957 DNA polymerase III su 97.7 0.00042 9E-09 71.0 12.6 119 109-250 20-158 (546)
37 PRK11331 5-methylcytosine-spec 97.7 0.0002 4.4E-09 70.8 9.7 116 109-235 179-297 (459)
38 PRK04195 replication factor C 97.7 0.00033 7.2E-09 71.5 11.6 116 109-250 18-139 (482)
39 PRK07003 DNA polymerase III su 97.7 0.00057 1.2E-08 71.5 13.2 135 109-251 20-159 (830)
40 PRK00440 rfc replication facto 97.7 0.00084 1.8E-08 64.6 13.7 119 109-250 21-141 (319)
41 PLN03025 replication factor C 97.6 0.00052 1.1E-08 66.1 11.7 120 109-250 17-138 (319)
42 PRK14963 DNA polymerase III su 97.6 0.00072 1.6E-08 68.9 12.6 134 109-250 18-155 (504)
43 TIGR00678 holB DNA polymerase 97.6 0.0013 2.8E-08 58.2 12.9 42 210-251 95-136 (188)
44 TIGR01242 26Sp45 26S proteasom 97.6 0.00015 3.2E-09 71.4 7.3 48 109-158 126-184 (364)
45 COG2256 MGS1 ATPase related to 97.6 0.00032 7E-09 67.4 9.2 102 117-251 39-143 (436)
46 PRK12377 putative replication 97.6 0.00047 1E-08 63.6 9.9 103 128-251 101-206 (248)
47 PRK14949 DNA polymerase III su 97.6 0.00076 1.7E-08 71.8 12.4 133 109-250 20-158 (944)
48 PRK07952 DNA replication prote 97.6 0.00051 1.1E-08 63.2 10.0 123 109-251 80-205 (244)
49 PF00004 AAA: ATPase family as 97.6 9.1E-05 2E-09 61.1 4.6 21 131-151 1-21 (132)
50 PRK08118 topology modulation p 97.6 4.2E-05 9.1E-10 66.4 2.6 34 130-163 3-37 (167)
51 PRK12323 DNA polymerase III su 97.6 0.0012 2.6E-08 68.1 13.2 139 109-250 20-163 (700)
52 PRK08691 DNA polymerase III su 97.5 0.001 2.3E-08 69.2 12.8 134 109-250 20-158 (709)
53 cd01393 recA_like RecA is a b 97.5 0.0012 2.5E-08 60.3 11.6 131 121-252 12-170 (226)
54 KOG2028 ATPase related to the 97.5 0.00039 8.5E-09 65.8 8.4 99 127-251 161-261 (554)
55 PRK10536 hypothetical protein; 97.5 0.0014 3.1E-08 60.1 11.9 130 109-253 59-215 (262)
56 PRK13341 recombination factor 97.5 0.00046 1E-08 73.1 9.7 106 109-247 32-142 (725)
57 PRK14958 DNA polymerase III su 97.5 0.0015 3.3E-08 66.7 13.1 134 109-250 20-158 (509)
58 PRK14969 DNA polymerase III su 97.5 0.0021 4.6E-08 66.0 14.0 134 109-250 20-158 (527)
59 PF04665 Pox_A32: Poxvirus A32 97.5 0.00023 4.9E-09 64.9 6.1 37 128-166 13-49 (241)
60 PRK08727 hypothetical protein; 97.5 0.00058 1.3E-08 62.7 8.8 37 128-166 41-77 (233)
61 TIGR02397 dnaX_nterm DNA polym 97.5 0.0024 5.2E-08 62.4 13.7 41 109-150 18-58 (355)
62 PRK14951 DNA polymerase III su 97.4 0.0019 4E-08 67.2 12.9 137 109-250 20-163 (618)
63 PRK14955 DNA polymerase III su 97.4 0.0028 6.1E-08 63.0 13.1 140 109-249 20-165 (397)
64 PRK07940 DNA polymerase III su 97.4 0.0026 5.6E-08 62.9 12.6 135 109-251 9-157 (394)
65 PRK14962 DNA polymerase III su 97.4 0.0024 5.2E-08 64.6 12.6 42 109-151 18-59 (472)
66 PRK06645 DNA polymerase III su 97.4 0.0034 7.3E-08 63.9 13.6 142 109-255 25-173 (507)
67 PRK08181 transposase; Validate 97.3 0.00061 1.3E-08 63.6 7.4 101 129-251 107-209 (269)
68 PF05621 TniB: Bacterial TniB 97.3 0.0028 6.1E-08 59.4 11.7 105 112-221 44-155 (302)
69 PRK08084 DNA replication initi 97.3 0.00073 1.6E-08 62.1 7.8 51 113-167 32-82 (235)
70 PRK14970 DNA polymerase III su 97.3 0.0031 6.8E-08 62.0 12.8 41 109-150 21-61 (367)
71 PRK09087 hypothetical protein; 97.3 0.00072 1.6E-08 61.7 7.5 24 128-151 44-67 (226)
72 PRK14964 DNA polymerase III su 97.3 0.0034 7.3E-08 63.5 12.7 115 109-249 17-154 (491)
73 PRK07994 DNA polymerase III su 97.3 0.0021 4.5E-08 67.1 11.5 134 109-250 20-158 (647)
74 PF02562 PhoH: PhoH-like prote 97.3 0.00095 2.1E-08 59.5 7.7 129 112-255 7-160 (205)
75 PRK07261 topology modulation p 97.3 0.00074 1.6E-08 58.8 6.8 65 130-221 2-67 (171)
76 PRK14971 DNA polymerase III su 97.3 0.056 1.2E-06 56.7 21.8 113 109-248 21-158 (614)
77 PRK03992 proteasome-activating 97.3 0.0011 2.5E-08 65.6 8.9 42 109-150 135-187 (389)
78 PRK08903 DnaA regulatory inact 97.3 0.00086 1.9E-08 61.2 7.5 42 109-151 23-65 (227)
79 PRK05896 DNA polymerase III su 97.2 0.0034 7.4E-08 64.7 12.1 133 109-249 20-157 (605)
80 PRK08939 primosomal protein Dn 97.2 0.002 4.4E-08 61.5 9.8 120 109-250 135-260 (306)
81 cd01131 PilT Pilus retraction 97.2 0.0011 2.3E-08 59.3 7.3 111 129-255 2-113 (198)
82 PF13177 DNA_pol3_delta2: DNA 97.2 0.0079 1.7E-07 51.8 12.4 120 109-252 1-143 (162)
83 PRK14956 DNA polymerase III su 97.2 0.0024 5.1E-08 64.1 10.2 137 109-253 22-164 (484)
84 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0027 5.8E-08 59.4 9.8 58 110-176 7-64 (262)
85 PRK14952 DNA polymerase III su 97.2 0.0073 1.6E-07 62.5 13.6 138 109-254 17-162 (584)
86 PRK09112 DNA polymerase III su 97.1 0.0085 1.8E-07 58.3 13.3 135 109-250 27-180 (351)
87 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0016 3.5E-08 70.6 9.2 131 109-250 570-718 (852)
88 PRK06526 transposase; Provisio 97.1 0.00076 1.6E-08 62.6 5.6 24 128-151 98-121 (254)
89 KOG2004 Mitochondrial ATP-depe 97.1 0.0027 5.8E-08 65.3 9.8 143 63-221 355-515 (906)
90 PRK07471 DNA polymerase III su 97.1 0.0088 1.9E-07 58.6 13.2 139 109-252 23-182 (365)
91 PRK07764 DNA polymerase III su 97.1 0.0058 1.3E-07 65.8 12.8 138 109-254 19-164 (824)
92 COG3899 Predicted ATPase [Gene 97.1 0.016 3.4E-07 63.1 16.2 42 109-150 4-46 (849)
93 TIGR02237 recomb_radB DNA repa 97.1 0.0019 4.1E-08 58.1 7.9 95 123-221 7-107 (209)
94 PRK09361 radB DNA repair and r 97.1 0.0024 5.2E-08 58.2 8.7 97 119-221 14-117 (225)
95 PRK12608 transcription termina 97.1 0.0016 3.5E-08 63.0 7.8 106 113-221 119-230 (380)
96 PF00308 Bac_DnaA: Bacterial d 97.1 0.0017 3.6E-08 59.0 7.5 113 117-251 22-140 (219)
97 PRK09183 transposase/IS protei 97.1 0.0015 3.2E-08 61.0 7.2 23 128-150 102-124 (259)
98 PRK06921 hypothetical protein; 97.1 0.0016 3.5E-08 60.9 7.5 37 128-166 117-154 (266)
99 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0035 7.5E-08 57.5 9.6 97 124-221 15-125 (235)
100 COG1373 Predicted ATPase (AAA+ 97.1 0.004 8.6E-08 61.8 10.5 96 130-254 39-134 (398)
101 TIGR02639 ClpA ATP-dependent C 97.1 0.0043 9.3E-08 66.6 11.6 114 109-237 458-579 (731)
102 PRK14950 DNA polymerase III su 97.1 0.0094 2E-07 62.3 13.8 135 109-250 20-159 (585)
103 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0052 1.1E-07 67.1 12.3 131 109-250 569-717 (852)
104 PRK06835 DNA replication prote 97.1 0.0027 6E-08 61.1 9.1 121 110-250 165-288 (329)
105 PF01695 IstB_IS21: IstB-like 97.1 0.00038 8.3E-09 61.0 2.8 101 128-251 47-150 (178)
106 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0017 3.7E-08 60.4 7.2 92 128-221 69-173 (274)
107 cd01120 RecA-like_NTPases RecA 97.1 0.0062 1.4E-07 51.8 10.4 40 130-171 1-40 (165)
108 PRK09111 DNA polymerase III su 97.1 0.0074 1.6E-07 62.8 12.6 140 109-253 28-175 (598)
109 PF13207 AAA_17: AAA domain; P 97.0 0.0005 1.1E-08 56.0 3.2 21 130-150 1-21 (121)
110 PRK10865 protein disaggregatio 97.0 0.0037 8.1E-08 68.0 10.8 130 109-250 572-720 (857)
111 PF05673 DUF815: Protein of un 97.0 0.012 2.6E-07 53.6 12.2 118 109-255 31-155 (249)
112 PRK06696 uridine kinase; Valid 97.0 0.001 2.2E-08 60.6 5.5 41 110-150 3-44 (223)
113 COG1136 SalX ABC-type antimicr 97.0 0.0092 2E-07 53.9 11.4 130 128-259 31-211 (226)
114 TIGR00362 DnaA chromosomal rep 97.0 0.003 6.4E-08 63.1 9.0 101 128-250 136-241 (405)
115 COG0466 Lon ATP-dependent Lon 97.0 0.00099 2.2E-08 68.5 5.6 48 109-158 327-378 (782)
116 PRK05642 DNA replication initi 97.0 0.0011 2.5E-08 60.8 5.6 37 128-166 45-81 (234)
117 PRK14953 DNA polymerase III su 97.0 0.015 3.2E-07 59.2 14.0 41 109-150 20-60 (486)
118 PF05496 RuvB_N: Holliday junc 97.0 0.0047 1E-07 55.4 9.2 52 105-158 23-78 (233)
119 PHA00729 NTP-binding motif con 97.0 0.0018 3.9E-08 58.4 6.5 33 116-150 7-39 (226)
120 PRK00149 dnaA chromosomal repl 97.0 0.0042 9.1E-08 62.9 9.9 116 113-250 133-253 (450)
121 TIGR02881 spore_V_K stage V sp 97.0 0.0043 9.4E-08 57.9 9.3 24 127-150 41-64 (261)
122 PRK14954 DNA polymerase III su 97.0 0.013 2.8E-07 61.2 13.5 140 109-249 20-165 (620)
123 COG0470 HolB ATPase involved i 97.0 0.0092 2E-07 57.4 11.7 122 109-250 5-148 (325)
124 PTZ00454 26S protease regulato 96.9 0.0045 9.8E-08 61.3 9.5 43 109-151 149-202 (398)
125 PF08423 Rad51: Rad51; InterP 96.9 0.0022 4.7E-08 59.7 6.8 94 127-221 37-143 (256)
126 PRK14088 dnaA chromosomal repl 96.9 0.0071 1.5E-07 60.9 10.9 73 128-221 130-204 (440)
127 PRK14087 dnaA chromosomal repl 96.9 0.0033 7.2E-08 63.4 8.6 105 127-251 140-249 (450)
128 CHL00181 cbbX CbbX; Provisiona 96.9 0.0072 1.6E-07 57.2 10.2 22 129-150 60-81 (287)
129 TIGR03689 pup_AAA proteasome A 96.9 0.0058 1.3E-07 62.1 10.1 43 109-151 186-239 (512)
130 cd03247 ABCC_cytochrome_bd The 96.9 0.0043 9.3E-08 54.3 8.0 122 128-255 28-161 (178)
131 TIGR02880 cbbX_cfxQ probable R 96.9 0.0054 1.2E-07 58.0 9.2 21 130-150 60-80 (284)
132 cd03214 ABC_Iron-Siderophores_ 96.9 0.01 2.3E-07 52.0 10.4 125 128-256 25-163 (180)
133 cd03238 ABC_UvrA The excision 96.9 0.011 2.3E-07 51.8 10.3 118 128-255 21-153 (176)
134 COG1484 DnaC DNA replication p 96.9 0.0032 6.9E-08 58.5 7.3 93 109-223 87-179 (254)
135 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0099 2.1E-07 54.6 10.3 127 128-256 30-204 (254)
136 PRK04296 thymidine kinase; Pro 96.8 0.0032 6.8E-08 55.9 6.8 116 129-253 3-118 (190)
137 PRK05541 adenylylsulfate kinas 96.8 0.0019 4.1E-08 56.5 5.2 36 127-164 6-41 (176)
138 TIGR02238 recomb_DMC1 meiotic 96.8 0.0062 1.3E-07 58.3 9.1 101 120-221 88-201 (313)
139 COG2884 FtsE Predicted ATPase 96.8 0.03 6.5E-07 48.8 12.0 127 127-259 27-205 (223)
140 CHL00095 clpC Clp protease ATP 96.8 0.01 2.3E-07 64.5 11.7 131 109-251 513-662 (821)
141 COG0542 clpA ATP-binding subun 96.8 0.0057 1.2E-07 64.5 9.1 114 109-238 495-620 (786)
142 PRK07667 uridine kinase; Provi 96.8 0.0021 4.5E-08 57.2 5.2 37 114-150 3-39 (193)
143 PRK14959 DNA polymerase III su 96.8 0.019 4.1E-07 59.6 12.8 132 109-250 20-158 (624)
144 cd01394 radB RadB. The archaea 96.8 0.0069 1.5E-07 54.9 8.7 99 119-221 10-113 (218)
145 PF14532 Sigma54_activ_2: Sigm 96.8 0.0026 5.6E-08 53.3 5.4 107 109-251 2-110 (138)
146 PF00448 SRP54: SRP54-type pro 96.8 0.0027 5.8E-08 56.6 5.7 57 128-186 1-58 (196)
147 PRK12422 chromosomal replicati 96.8 0.0039 8.4E-08 62.7 7.5 101 128-250 141-244 (445)
148 PRK06620 hypothetical protein; 96.8 0.0098 2.1E-07 53.8 9.4 23 129-151 45-67 (214)
149 PRK14965 DNA polymerase III su 96.8 0.022 4.8E-07 59.3 13.2 41 109-150 20-60 (576)
150 CHL00095 clpC Clp protease ATP 96.7 0.0033 7.2E-08 68.3 7.4 40 109-150 183-222 (821)
151 PRK11034 clpA ATP-dependent Cl 96.7 0.0057 1.2E-07 65.3 9.0 113 109-236 462-582 (758)
152 PLN03187 meiotic recombination 96.7 0.0071 1.5E-07 58.5 8.8 100 121-221 119-231 (344)
153 PRK06067 flagellar accessory p 96.7 0.011 2.3E-07 54.3 9.8 127 119-250 16-164 (234)
154 PRK14086 dnaA chromosomal repl 96.7 0.0066 1.4E-07 62.7 8.9 101 128-250 314-419 (617)
155 PRK14948 DNA polymerase III su 96.7 0.028 6E-07 59.0 13.7 136 109-250 20-160 (620)
156 PRK10787 DNA-binding ATP-depen 96.7 0.019 4.2E-07 61.8 12.5 42 109-150 326-371 (784)
157 COG0572 Udk Uridine kinase [Nu 96.7 0.0031 6.7E-08 56.4 5.4 79 127-212 7-85 (218)
158 PF07693 KAP_NTPase: KAP famil 96.7 0.015 3.3E-07 56.0 10.8 42 110-151 1-43 (325)
159 TIGR02858 spore_III_AA stage I 96.7 0.044 9.6E-07 51.3 13.4 134 113-256 97-234 (270)
160 TIGR03499 FlhF flagellar biosy 96.7 0.0075 1.6E-07 57.0 8.3 86 127-219 193-280 (282)
161 TIGR02239 recomb_RAD51 DNA rep 96.6 0.011 2.4E-07 56.7 9.4 102 119-221 87-201 (316)
162 PF07728 AAA_5: AAA domain (dy 96.6 0.0018 3.9E-08 54.1 3.5 87 131-235 2-89 (139)
163 PF00485 PRK: Phosphoribulokin 96.6 0.011 2.3E-07 52.6 8.7 83 130-215 1-87 (194)
164 cd03216 ABC_Carb_Monos_I This 96.6 0.01 2.2E-07 51.2 8.2 118 128-256 26-147 (163)
165 PRK04301 radA DNA repair and r 96.6 0.017 3.6E-07 55.6 10.4 102 119-221 93-208 (317)
166 PF13604 AAA_30: AAA domain; P 96.6 0.0084 1.8E-07 53.4 7.7 108 128-251 18-131 (196)
167 PRK09270 nucleoside triphospha 96.6 0.019 4E-07 52.6 10.2 26 125-150 30-55 (229)
168 PRK08451 DNA polymerase III su 96.6 0.046 1E-06 56.0 13.9 134 109-250 18-156 (535)
169 PF13671 AAA_33: AAA domain; P 96.6 0.0055 1.2E-07 51.3 6.1 21 130-150 1-21 (143)
170 COG1618 Predicted nucleotide k 96.6 0.002 4.3E-08 54.4 3.1 31 128-160 5-36 (179)
171 PRK06305 DNA polymerase III su 96.6 0.024 5.3E-07 57.2 11.7 41 109-150 21-61 (451)
172 COG1126 GlnQ ABC-type polar am 96.6 0.043 9.4E-07 48.8 11.6 129 128-259 28-204 (240)
173 PRK14974 cell division protein 96.6 0.035 7.6E-07 53.6 12.2 102 127-233 139-246 (336)
174 COG4608 AppF ABC-type oligopep 96.6 0.014 3E-07 53.8 8.8 131 127-260 38-179 (268)
175 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0028 6.1E-08 61.1 4.6 43 109-151 55-101 (361)
176 PLN03186 DNA repair protein RA 96.5 0.019 4.1E-07 55.6 10.3 102 119-221 114-228 (342)
177 TIGR00763 lon ATP-dependent pr 96.5 0.015 3.2E-07 63.0 10.6 48 109-158 324-375 (775)
178 PF00158 Sigma54_activat: Sigm 96.5 0.0088 1.9E-07 51.8 7.3 130 109-251 3-144 (168)
179 PRK07133 DNA polymerase III su 96.5 0.035 7.6E-07 58.6 12.9 41 109-150 22-62 (725)
180 PRK00771 signal recognition pa 96.5 0.037 8.1E-07 55.4 12.5 24 127-150 94-117 (437)
181 cd03223 ABCD_peroxisomal_ALDP 96.5 0.04 8.7E-07 47.6 11.4 116 128-255 27-152 (166)
182 PRK14722 flhF flagellar biosyn 96.5 0.018 4E-07 56.2 10.1 87 127-221 136-225 (374)
183 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.034 7.4E-07 46.8 10.5 106 128-256 26-132 (144)
184 PRK12724 flagellar biosynthesi 96.5 0.029 6.3E-07 55.4 11.3 23 128-150 223-245 (432)
185 PRK10865 protein disaggregatio 96.5 0.011 2.3E-07 64.5 9.2 41 109-151 182-222 (857)
186 CHL00176 ftsH cell division pr 96.5 0.011 2.3E-07 62.1 8.8 89 109-221 187-285 (638)
187 cd00983 recA RecA is a bacter 96.5 0.013 2.8E-07 56.1 8.5 91 124-221 51-143 (325)
188 PRK11889 flhF flagellar biosyn 96.5 0.051 1.1E-06 53.2 12.6 104 127-236 240-347 (436)
189 TIGR02012 tigrfam_recA protein 96.4 0.01 2.3E-07 56.7 7.8 92 123-221 50-143 (321)
190 TIGR02639 ClpA ATP-dependent C 96.4 0.0075 1.6E-07 64.8 7.6 40 109-150 186-225 (731)
191 TIGR02236 recomb_radA DNA repa 96.4 0.02 4.3E-07 55.0 9.8 66 119-185 86-155 (310)
192 COG0468 RecA RecA/RadA recombi 96.4 0.022 4.9E-07 53.2 9.7 96 123-221 55-151 (279)
193 PRK05707 DNA polymerase III su 96.4 0.047 1E-06 52.7 12.3 43 210-252 105-147 (328)
194 PRK08058 DNA polymerase III su 96.4 0.051 1.1E-06 52.6 12.6 134 110-251 11-150 (329)
195 PRK14723 flhF flagellar biosyn 96.4 0.042 9E-07 58.3 12.7 23 128-150 185-207 (767)
196 KOG2227 Pre-initiation complex 96.4 0.024 5.2E-07 55.8 10.1 109 109-221 154-266 (529)
197 COG1120 FepC ABC-type cobalami 96.4 0.023 5E-07 52.4 9.5 132 127-259 27-207 (258)
198 PRK09354 recA recombinase A; P 96.4 0.014 3E-07 56.4 8.4 92 123-221 55-148 (349)
199 TIGR00602 rad24 checkpoint pro 96.4 0.012 2.7E-07 61.4 8.5 43 109-151 88-133 (637)
200 COG1875 NYN ribonuclease and A 96.4 0.013 2.9E-07 55.9 7.7 134 109-253 228-390 (436)
201 TIGR00959 ffh signal recogniti 96.3 0.019 4.1E-07 57.3 9.2 24 127-150 98-121 (428)
202 cd03222 ABC_RNaseL_inhibitor T 96.3 0.039 8.4E-07 48.3 10.1 104 128-256 25-137 (177)
203 PRK06647 DNA polymerase III su 96.3 0.071 1.5E-06 55.3 13.6 131 109-250 20-158 (563)
204 TIGR01425 SRP54_euk signal rec 96.3 0.067 1.4E-06 53.2 12.8 24 127-150 99-122 (429)
205 TIGR01241 FtsH_fam ATP-depende 96.3 0.039 8.4E-07 56.6 11.6 89 109-221 59-157 (495)
206 PRK11034 clpA ATP-dependent Cl 96.3 0.012 2.5E-07 63.0 8.0 40 109-150 190-229 (758)
207 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.034 7.5E-07 48.7 9.9 21 130-150 1-21 (183)
208 PTZ00361 26 proteosome regulat 96.3 0.0072 1.6E-07 60.4 6.0 48 109-158 187-245 (438)
209 PRK13695 putative NTPase; Prov 96.3 0.0036 7.8E-08 54.6 3.5 22 130-151 2-23 (174)
210 PRK10867 signal recognition pa 96.3 0.02 4.4E-07 57.1 9.2 24 127-150 99-122 (433)
211 TIGR03346 chaperone_ClpB ATP-d 96.3 0.015 3.2E-07 63.7 8.8 40 109-150 177-216 (852)
212 PRK13531 regulatory ATPase Rav 96.3 0.018 3.9E-07 57.8 8.6 39 109-151 24-62 (498)
213 cd03115 SRP The signal recogni 96.3 0.03 6.5E-07 48.7 9.2 21 130-150 2-22 (173)
214 TIGR00064 ftsY signal recognit 96.3 0.031 6.8E-07 52.5 9.9 91 127-221 71-164 (272)
215 PTZ00301 uridine kinase; Provi 96.3 0.0047 1E-07 55.6 4.1 23 128-150 3-25 (210)
216 cd03246 ABCC_Protease_Secretio 96.3 0.042 9E-07 47.8 10.0 123 128-255 28-160 (173)
217 cd03230 ABC_DR_subfamily_A Thi 96.3 0.02 4.4E-07 49.8 8.1 123 128-256 26-160 (173)
218 COG0541 Ffh Signal recognition 96.2 0.49 1.1E-05 46.6 17.9 70 114-186 79-157 (451)
219 PRK13543 cytochrome c biogenes 96.2 0.078 1.7E-06 47.9 12.0 132 128-259 37-205 (214)
220 PRK08233 hypothetical protein; 96.2 0.0041 9E-08 54.4 3.6 24 128-151 3-26 (182)
221 COG4618 ArpD ABC-type protease 96.2 0.065 1.4E-06 53.5 12.0 23 128-150 362-384 (580)
222 PRK14721 flhF flagellar biosyn 96.2 0.059 1.3E-06 53.5 11.9 24 127-150 190-213 (420)
223 COG2607 Predicted ATPase (AAA+ 96.2 0.081 1.8E-06 47.8 11.5 111 109-250 64-182 (287)
224 PRK15455 PrkA family serine pr 96.2 0.0061 1.3E-07 62.1 5.0 48 103-150 73-125 (644)
225 PF13238 AAA_18: AAA domain; P 96.2 0.0037 8.1E-08 51.1 3.0 20 131-150 1-20 (129)
226 cd03228 ABCC_MRP_Like The MRP 96.2 0.061 1.3E-06 46.7 10.8 122 128-256 28-160 (171)
227 KOG0741 AAA+-type ATPase [Post 96.2 0.024 5.2E-07 56.6 8.9 115 117-260 526-660 (744)
228 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.065 1.4E-06 48.9 11.4 125 119-250 11-165 (229)
229 PRK05703 flhF flagellar biosyn 96.2 0.062 1.3E-06 53.8 12.1 87 128-220 221-308 (424)
230 PRK05563 DNA polymerase III su 96.2 0.12 2.6E-06 53.7 14.5 133 109-249 20-157 (559)
231 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.032 6.8E-07 51.3 9.3 126 118-250 11-170 (237)
232 PRK06547 hypothetical protein; 96.2 0.0081 1.8E-07 52.3 5.0 33 117-151 6-38 (172)
233 COG0593 DnaA ATPase involved i 96.2 0.022 4.9E-07 55.9 8.6 102 126-250 111-217 (408)
234 PRK05480 uridine/cytidine kina 96.2 0.0049 1.1E-07 55.5 3.7 24 127-150 5-28 (209)
235 PRK11248 tauB taurine transpor 96.2 0.083 1.8E-06 49.1 12.0 24 128-151 27-50 (255)
236 TIGR00554 panK_bact pantothena 96.1 0.044 9.5E-07 51.8 10.1 81 126-212 60-142 (290)
237 TIGR01243 CDC48 AAA family ATP 96.1 0.025 5.4E-07 60.9 9.5 42 109-150 182-234 (733)
238 COG1124 DppF ABC-type dipeptid 96.1 0.047 1E-06 49.4 9.6 131 128-260 33-211 (252)
239 TIGR00235 udk uridine kinase. 96.1 0.0053 1.2E-07 55.2 3.6 24 127-150 5-28 (207)
240 cd03263 ABC_subfamily_A The AB 96.1 0.091 2E-06 47.5 11.8 24 128-151 28-51 (220)
241 PRK06002 fliI flagellum-specif 96.1 0.03 6.4E-07 55.9 9.0 91 128-221 165-264 (450)
242 PTZ00035 Rad51 protein; Provis 96.1 0.069 1.5E-06 51.8 11.4 102 119-221 109-223 (337)
243 PRK13540 cytochrome c biogenes 96.1 0.1 2.2E-06 46.5 11.8 131 128-258 27-194 (200)
244 PRK11247 ssuB aliphatic sulfon 96.1 0.11 2.5E-06 48.3 12.4 130 128-257 38-200 (257)
245 TIGR01420 pilT_fam pilus retra 96.0 0.016 3.4E-07 56.4 6.8 112 128-254 122-233 (343)
246 cd03229 ABC_Class3 This class 96.0 0.033 7.1E-07 48.7 8.1 122 128-256 26-166 (178)
247 PRK12723 flagellar biosynthesi 96.0 0.16 3.5E-06 50.0 13.7 104 127-236 173-281 (388)
248 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.0 0.08 1.7E-06 48.2 11.0 24 128-151 48-71 (224)
249 PRK11608 pspF phage shock prot 96.0 0.025 5.4E-07 54.7 8.0 42 109-150 10-51 (326)
250 KOG0733 Nuclear AAA ATPase (VC 96.0 0.024 5.2E-07 57.5 7.8 89 109-221 194-292 (802)
251 PRK10247 putative ABC transpor 96.0 0.084 1.8E-06 48.0 11.0 55 201-255 145-202 (225)
252 cd03231 ABC_CcmA_heme_exporter 96.0 0.088 1.9E-06 47.0 10.9 131 128-258 26-192 (201)
253 cd03215 ABC_Carb_Monos_II This 96.0 0.048 1E-06 47.9 9.0 24 128-151 26-49 (182)
254 cd03266 ABC_NatA_sodium_export 96.0 0.097 2.1E-06 47.3 11.3 24 128-151 31-54 (218)
255 PRK06762 hypothetical protein; 95.9 0.0067 1.4E-07 52.4 3.4 23 128-150 2-24 (166)
256 PRK09544 znuC high-affinity zi 95.9 0.076 1.6E-06 49.3 10.7 130 128-257 30-187 (251)
257 cd02025 PanK Pantothenate kina 95.9 0.032 6.8E-07 50.7 7.8 74 130-209 1-76 (220)
258 PRK06995 flhF flagellar biosyn 95.9 0.068 1.5E-06 54.0 10.8 23 128-150 256-278 (484)
259 cd02019 NK Nucleoside/nucleoti 95.9 0.0064 1.4E-07 44.2 2.7 22 130-151 1-22 (69)
260 TIGR02974 phageshock_pspF psp 95.9 0.05 1.1E-06 52.6 9.5 43 109-151 3-45 (329)
261 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.091 2E-06 48.6 10.9 130 128-257 25-182 (246)
262 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.029 6.2E-07 48.0 6.8 121 129-251 3-138 (159)
263 TIGR01188 drrA daunorubicin re 95.8 0.17 3.6E-06 48.4 12.8 23 128-150 19-41 (302)
264 TIGR00150 HI0065_YjeE ATPase, 95.8 0.016 3.5E-07 47.9 5.0 39 113-151 7-45 (133)
265 cd03244 ABCC_MRP_domain2 Domai 95.8 0.076 1.7E-06 48.1 10.0 24 128-151 30-53 (221)
266 COG2255 RuvB Holliday junction 95.8 0.011 2.3E-07 54.7 4.2 43 109-151 30-75 (332)
267 KOG0989 Replication factor C, 95.8 0.045 9.7E-07 51.2 8.3 125 109-250 40-168 (346)
268 PHA02244 ATPase-like protein 95.8 0.12 2.5E-06 50.3 11.4 38 110-151 105-142 (383)
269 KOG1532 GTPase XAB1, interacts 95.8 0.041 8.8E-07 50.5 7.8 61 127-189 18-89 (366)
270 TIGR03522 GldA_ABC_ATP gliding 95.8 0.14 3.1E-06 48.8 12.2 24 128-151 28-51 (301)
271 TIGR03740 galliderm_ABC gallid 95.8 0.14 2.9E-06 46.5 11.6 24 128-151 26-49 (223)
272 COG1419 FlhF Flagellar GTP-bin 95.8 0.068 1.5E-06 52.2 9.8 103 127-236 202-308 (407)
273 TIGR03771 anch_rpt_ABC anchore 95.8 0.15 3.3E-06 46.3 11.9 56 201-256 121-178 (223)
274 PRK15429 formate hydrogenlyase 95.8 0.048 1E-06 58.3 9.7 131 109-251 380-521 (686)
275 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.049 1.1E-06 46.5 8.1 118 128-257 25-146 (157)
276 cd01122 GP4d_helicase GP4d_hel 95.8 0.18 4E-06 47.2 12.6 54 128-184 30-83 (271)
277 PRK08533 flagellar accessory p 95.8 0.075 1.6E-06 48.6 9.6 53 127-184 23-75 (230)
278 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0087 1.9E-07 52.6 3.4 24 127-150 2-25 (188)
279 PRK11147 ABC transporter ATPas 95.7 0.16 3.5E-06 53.8 13.4 59 198-258 161-220 (635)
280 PRK13647 cbiO cobalt transport 95.7 0.11 2.4E-06 48.8 11.0 59 199-257 144-204 (274)
281 COG1102 Cmk Cytidylate kinase 95.7 0.014 3.1E-07 49.3 4.2 44 130-186 2-45 (179)
282 PRK05439 pantothenate kinase; 95.7 0.08 1.7E-06 50.5 9.8 82 125-212 83-166 (311)
283 PRK03839 putative kinase; Prov 95.7 0.0088 1.9E-07 52.4 3.1 22 130-151 2-23 (180)
284 PRK15064 ABC transporter ATP-b 95.7 0.13 2.9E-06 53.2 12.3 58 198-257 160-218 (530)
285 cd03278 ABC_SMC_barmotin Barmo 95.7 0.2 4.3E-06 44.6 11.9 20 130-149 24-43 (197)
286 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.08 1.7E-06 47.2 9.4 121 128-256 26-169 (200)
287 cd02028 UMPK_like Uridine mono 95.7 0.022 4.9E-07 49.9 5.6 21 130-150 1-21 (179)
288 COG1131 CcmA ABC-type multidru 95.7 0.18 3.9E-06 47.9 12.1 128 128-258 31-204 (293)
289 PRK13537 nodulation ABC transp 95.6 0.22 4.7E-06 47.7 12.7 24 128-151 33-56 (306)
290 PRK08972 fliI flagellum-specif 95.6 0.038 8.3E-07 54.9 7.6 90 128-221 162-262 (444)
291 PRK12727 flagellar biosynthesi 95.6 0.036 7.8E-07 56.3 7.5 24 127-150 349-372 (559)
292 PRK13545 tagH teichoic acids e 95.6 0.16 3.6E-06 51.8 12.3 127 128-257 50-209 (549)
293 cd03264 ABC_drug_resistance_li 95.6 0.09 1.9E-06 47.3 9.6 21 130-150 27-47 (211)
294 COG0563 Adk Adenylate kinase a 95.6 0.019 4E-07 50.3 4.9 22 130-151 2-23 (178)
295 PRK06217 hypothetical protein; 95.6 0.025 5.5E-07 49.7 5.7 22 130-151 3-24 (183)
296 PTZ00088 adenylate kinase 1; P 95.6 0.013 2.9E-07 53.4 4.0 21 130-150 8-28 (229)
297 PRK04328 hypothetical protein; 95.6 0.052 1.1E-06 50.3 8.1 125 119-250 14-172 (249)
298 PRK12726 flagellar biosynthesi 95.6 0.17 3.7E-06 49.4 11.6 103 127-235 205-311 (407)
299 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.021 4.5E-07 51.6 5.2 124 128-258 29-161 (213)
300 cd03236 ABC_RNaseL_inhibitor_d 95.6 0.16 3.5E-06 47.2 11.2 24 128-151 26-49 (255)
301 PRK14269 phosphate ABC transpo 95.6 0.25 5.3E-06 45.6 12.5 23 128-150 28-50 (246)
302 PLN00020 ribulose bisphosphate 95.5 0.021 4.6E-07 55.1 5.3 26 126-151 146-171 (413)
303 TIGR03411 urea_trans_UrtD urea 95.5 0.21 4.5E-06 45.9 11.9 24 128-151 28-51 (242)
304 cd01121 Sms Sms (bacterial rad 95.5 0.027 5.9E-07 55.2 6.2 98 116-221 70-168 (372)
305 cd02023 UMPK Uridine monophosp 95.5 0.0092 2E-07 53.2 2.7 21 130-150 1-21 (198)
306 KOG1514 Origin recognition com 95.5 0.23 4.9E-06 51.6 12.7 130 109-248 400-546 (767)
307 TIGR02655 circ_KaiC circadian 95.5 0.06 1.3E-06 55.0 8.8 102 115-221 250-363 (484)
308 PRK08927 fliI flagellum-specif 95.5 0.042 9.2E-07 54.7 7.4 91 127-221 157-258 (442)
309 TIGR01817 nifA Nif-specific re 95.5 0.073 1.6E-06 55.2 9.5 43 109-151 200-242 (534)
310 COG0488 Uup ATPase components 95.5 0.16 3.5E-06 52.2 11.7 64 195-260 155-219 (530)
311 cd03240 ABC_Rad50 The catalyti 95.5 0.1 2.3E-06 46.7 9.3 54 203-256 131-188 (204)
312 COG0396 sufC Cysteine desulfur 95.5 0.22 4.8E-06 44.8 11.0 133 128-260 30-213 (251)
313 TIGR02322 phosphon_PhnN phosph 95.5 0.012 2.7E-07 51.4 3.2 23 129-151 2-24 (179)
314 PRK14738 gmk guanylate kinase; 95.5 0.014 3E-07 52.5 3.6 31 120-150 5-35 (206)
315 COG0488 Uup ATPase components 95.4 0.081 1.8E-06 54.3 9.5 132 127-260 347-505 (530)
316 KOG0734 AAA+-type ATPase conta 95.4 0.12 2.5E-06 52.0 10.0 46 109-154 308-363 (752)
317 PRK04040 adenylate kinase; Pro 95.4 0.014 2.9E-07 51.7 3.4 23 128-150 2-24 (188)
318 TIGR01243 CDC48 AAA family ATP 95.4 0.12 2.5E-06 55.8 11.2 43 109-151 457-510 (733)
319 PRK13634 cbiO cobalt transport 95.4 0.18 3.8E-06 47.9 11.2 60 198-257 150-212 (290)
320 cd01125 repA Hexameric Replica 95.4 0.093 2E-06 48.3 9.1 21 130-150 3-23 (239)
321 PRK10463 hydrogenase nickel in 95.4 0.1 2.2E-06 49.1 9.3 89 126-221 102-194 (290)
322 cd03213 ABCG_EPDR ABCG transpo 95.4 0.2 4.3E-06 44.5 10.8 118 128-252 35-172 (194)
323 cd03254 ABCC_Glucan_exporter_l 95.4 0.34 7.3E-06 44.1 12.7 24 128-151 29-52 (229)
324 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.14 3.1E-06 45.8 9.9 123 128-259 29-159 (204)
325 cd03369 ABCC_NFT1 Domain 2 of 95.4 0.28 6.1E-06 43.9 11.9 23 128-150 34-56 (207)
326 KOG0744 AAA+-type ATPase [Post 95.4 0.05 1.1E-06 51.2 6.9 80 128-221 177-260 (423)
327 KOG0991 Replication factor C, 95.4 0.093 2E-06 47.2 8.3 40 109-150 31-70 (333)
328 PF07724 AAA_2: AAA domain (Cd 95.4 0.015 3.2E-07 50.6 3.4 39 128-168 3-42 (171)
329 PF00006 ATP-synt_ab: ATP synt 95.4 0.024 5.2E-07 51.1 4.8 87 129-221 16-115 (215)
330 PRK08149 ATP synthase SpaL; Va 95.4 0.059 1.3E-06 53.6 7.9 90 128-221 151-251 (428)
331 PRK00625 shikimate kinase; Pro 95.4 0.013 2.8E-07 51.1 2.9 21 130-150 2-22 (173)
332 KOG0735 AAA+-type ATPase [Post 95.3 0.032 6.9E-07 57.6 6.0 70 128-221 431-504 (952)
333 TIGR02314 ABC_MetN D-methionin 95.3 0.2 4.3E-06 48.8 11.4 61 199-259 146-209 (343)
334 cd02024 NRK1 Nicotinamide ribo 95.3 0.012 2.5E-07 51.9 2.6 22 130-151 1-22 (187)
335 PRK00279 adk adenylate kinase; 95.3 0.11 2.4E-06 46.9 9.1 21 130-150 2-22 (215)
336 PRK10418 nikD nickel transport 95.3 0.33 7.1E-06 45.0 12.5 24 128-151 29-52 (254)
337 PRK13643 cbiO cobalt transport 95.3 0.27 5.8E-06 46.6 12.1 59 199-257 150-210 (288)
338 cd03233 ABC_PDR_domain1 The pl 95.3 0.14 3.1E-06 45.7 9.7 24 128-151 33-56 (202)
339 PRK00131 aroK shikimate kinase 95.3 0.015 3.4E-07 50.2 3.3 23 128-150 4-26 (175)
340 PRK12597 F0F1 ATP synthase sub 95.3 0.045 9.7E-07 55.0 6.9 93 128-221 143-247 (461)
341 TIGR01288 nodI ATP-binding ABC 95.3 0.29 6.3E-06 46.8 12.3 24 128-151 30-53 (303)
342 TIGR03375 type_I_sec_LssB type 95.3 0.2 4.3E-06 53.8 12.4 24 127-150 490-513 (694)
343 cd01129 PulE-GspE PulE/GspE Th 95.3 0.086 1.9E-06 49.3 8.4 121 109-250 63-183 (264)
344 PRK13536 nodulation factor exp 95.3 0.31 6.6E-06 47.4 12.5 24 128-151 67-90 (340)
345 PRK10636 putative ABC transpor 95.3 0.28 6.1E-06 52.0 13.2 59 198-258 154-213 (638)
346 PRK00889 adenylylsulfate kinas 95.3 0.018 4E-07 50.1 3.7 24 127-150 3-26 (175)
347 KOG1969 DNA replication checkp 95.3 0.083 1.8E-06 54.9 8.7 71 127-221 325-397 (877)
348 PF13481 AAA_25: AAA domain; P 95.2 0.016 3.5E-07 51.2 3.3 120 128-249 32-187 (193)
349 TIGR03263 guanyl_kin guanylate 95.2 0.016 3.5E-07 50.7 3.2 22 129-150 2-23 (180)
350 cd03243 ABC_MutS_homologs The 95.2 0.016 3.4E-07 51.9 3.2 22 129-150 30-51 (202)
351 CHL00195 ycf46 Ycf46; Provisio 95.2 0.11 2.3E-06 53.0 9.4 43 109-151 232-282 (489)
352 PF12775 AAA_7: P-loop contain 95.2 0.022 4.9E-07 53.4 4.2 34 115-151 23-56 (272)
353 TIGR00416 sms DNA repair prote 95.2 0.12 2.7E-06 52.2 9.7 99 115-221 81-180 (454)
354 PF00625 Guanylate_kin: Guanyl 95.2 0.025 5.5E-07 49.7 4.3 35 128-164 2-36 (183)
355 PRK05022 anaerobic nitric oxid 95.2 0.077 1.7E-06 54.6 8.5 43 109-151 191-233 (509)
356 COG2842 Uncharacterized ATPase 95.2 0.14 3E-06 47.8 9.1 107 117-235 83-189 (297)
357 PRK07399 DNA polymerase III su 95.1 0.51 1.1E-05 45.3 13.4 138 109-251 8-163 (314)
358 cd01135 V_A-ATPase_B V/A-type 95.1 0.081 1.8E-06 49.3 7.6 94 128-221 69-176 (276)
359 PF00154 RecA: recA bacterial 95.1 0.064 1.4E-06 51.3 7.1 89 126-221 51-141 (322)
360 PF03308 ArgK: ArgK protein; 95.1 0.03 6.5E-07 51.4 4.7 65 113-177 14-78 (266)
361 PRK13947 shikimate kinase; Pro 95.1 0.016 3.5E-07 50.2 2.9 21 130-150 3-23 (171)
362 PLN02318 phosphoribulokinase/u 95.1 0.028 6E-07 57.7 4.9 33 118-150 55-87 (656)
363 cd02021 GntK Gluconate kinase 95.1 0.015 3.4E-07 49.1 2.7 22 130-151 1-22 (150)
364 cd03289 ABCC_CFTR2 The CFTR su 95.1 0.35 7.6E-06 45.5 12.1 24 128-151 30-53 (275)
365 PRK15439 autoinducer 2 ABC tra 95.1 0.3 6.5E-06 50.4 12.6 129 128-256 37-205 (510)
366 cd02020 CMPK Cytidine monophos 95.1 0.016 3.4E-07 48.6 2.7 21 130-150 1-21 (147)
367 PRK03846 adenylylsulfate kinas 95.1 0.022 4.8E-07 50.8 3.7 24 127-150 23-46 (198)
368 PRK15453 phosphoribulokinase; 95.1 0.13 2.9E-06 48.1 8.8 81 127-210 4-89 (290)
369 cd03287 ABC_MSH3_euk MutS3 hom 95.1 0.16 3.5E-06 46.1 9.3 112 128-257 31-160 (222)
370 cd01132 F1_ATPase_alpha F1 ATP 95.1 0.081 1.8E-06 49.3 7.4 99 128-233 69-182 (274)
371 TIGR03498 FliI_clade3 flagella 95.1 0.052 1.1E-06 53.9 6.5 90 128-221 140-240 (418)
372 cd00071 GMPK Guanosine monopho 95.1 0.021 4.5E-07 47.7 3.2 21 130-150 1-21 (137)
373 PRK09099 type III secretion sy 95.0 0.092 2E-06 52.5 8.2 92 127-221 162-263 (441)
374 cd00227 CPT Chloramphenicol (C 95.0 0.019 4.1E-07 50.1 3.1 23 129-151 3-25 (175)
375 PRK13409 putative ATPase RIL; 95.0 0.22 4.8E-06 52.2 11.5 128 128-258 365-521 (590)
376 PF01583 APS_kinase: Adenylyls 95.0 0.024 5.3E-07 48.2 3.6 35 128-164 2-36 (156)
377 PRK10416 signal recognition pa 95.0 0.12 2.6E-06 49.6 8.7 25 127-151 113-137 (318)
378 PF03205 MobB: Molybdopterin g 95.0 0.022 4.7E-07 47.8 3.2 38 129-168 1-39 (140)
379 smart00534 MUTSac ATPase domai 95.0 0.012 2.5E-07 52.0 1.7 21 130-150 1-21 (185)
380 COG0467 RAD55 RecA-superfamily 95.0 0.037 8E-07 51.6 5.1 44 124-169 19-62 (260)
381 PRK14264 phosphate ABC transpo 95.0 0.53 1.1E-05 45.0 13.1 25 127-151 70-94 (305)
382 TIGR03575 selen_PSTK_euk L-ser 95.0 0.067 1.5E-06 51.6 6.9 21 131-151 2-22 (340)
383 PRK11144 modC molybdate transp 95.0 0.44 9.5E-06 46.6 12.7 24 128-151 24-47 (352)
384 PRK08769 DNA polymerase III su 95.0 0.54 1.2E-05 45.1 13.0 42 210-251 112-153 (319)
385 PRK10751 molybdopterin-guanine 95.0 0.023 5E-07 49.3 3.4 24 127-150 5-28 (173)
386 KOG2228 Origin recognition com 95.0 0.12 2.6E-06 49.0 8.2 140 109-251 28-182 (408)
387 COG1703 ArgK Putative periplas 94.9 0.028 6E-07 52.4 3.9 67 114-180 37-103 (323)
388 KOG3347 Predicted nucleotide k 94.9 0.042 9.2E-07 45.8 4.5 23 128-150 7-29 (176)
389 PRK06936 type III secretion sy 94.9 0.099 2.1E-06 52.1 8.0 91 127-221 161-262 (439)
390 cd02029 PRK_like Phosphoribulo 94.9 0.1 2.2E-06 48.4 7.6 81 130-212 1-85 (277)
391 KOG1051 Chaperone HSP104 and r 94.9 0.21 4.6E-06 53.8 10.9 113 109-236 566-685 (898)
392 PRK11000 maltose/maltodextrin 94.9 0.31 6.7E-06 48.0 11.6 24 128-151 29-52 (369)
393 COG0003 ArsA Predicted ATPase 94.9 0.037 8E-07 53.0 4.9 46 128-175 2-47 (322)
394 cd03285 ABC_MSH2_euk MutS2 hom 94.9 0.028 6.1E-07 51.1 3.9 125 127-258 29-160 (222)
395 PRK00300 gmk guanylate kinase; 94.9 0.024 5.2E-07 50.7 3.4 24 128-151 5-28 (205)
396 TIGR03345 VI_ClpV1 type VI sec 94.9 0.028 6.1E-07 61.2 4.5 40 109-150 191-230 (852)
397 PF08477 Miro: Miro-like prote 94.9 0.025 5.5E-07 45.5 3.2 23 131-153 2-24 (119)
398 TIGR01040 V-ATPase_V1_B V-type 94.9 0.08 1.7E-06 52.8 7.2 94 128-221 141-257 (466)
399 PRK13949 shikimate kinase; Pro 94.9 0.022 4.9E-07 49.4 3.0 21 130-150 3-23 (169)
400 COG1428 Deoxynucleoside kinase 94.9 0.022 4.8E-07 50.4 2.9 24 128-151 4-27 (216)
401 PRK09519 recA DNA recombinatio 94.8 0.12 2.5E-06 55.2 8.7 96 119-221 50-148 (790)
402 PRK10938 putative molybdenum t 94.8 0.31 6.7E-06 49.9 11.7 23 128-150 29-51 (490)
403 PRK11823 DNA repair protein Ra 94.8 0.14 3E-06 51.7 8.9 98 116-221 68-166 (446)
404 KOG0924 mRNA splicing factor A 94.8 0.21 4.6E-06 51.4 10.0 137 113-258 360-520 (1042)
405 PRK10078 ribose 1,5-bisphospho 94.8 0.025 5.5E-07 49.8 3.2 23 129-151 3-25 (186)
406 PTZ00185 ATPase alpha subunit; 94.8 0.14 3E-06 51.7 8.6 94 128-221 189-299 (574)
407 cd01130 VirB11-like_ATPase Typ 94.8 0.041 8.9E-07 48.5 4.5 107 113-233 13-120 (186)
408 PF00910 RNA_helicase: RNA hel 94.8 0.019 4.1E-07 45.7 2.1 20 131-150 1-20 (107)
409 TIGR02868 CydC thiol reductant 94.8 0.27 5.8E-06 50.9 11.2 24 127-150 360-383 (529)
410 TIGR02782 TrbB_P P-type conjug 94.8 0.21 4.5E-06 47.6 9.5 90 129-232 133-223 (299)
411 PRK07594 type III secretion sy 94.7 0.086 1.9E-06 52.5 7.1 91 127-221 154-255 (433)
412 PRK10875 recD exonuclease V su 94.7 0.13 2.9E-06 53.8 8.8 114 128-248 167-299 (615)
413 PRK09302 circadian clock prote 94.7 0.17 3.8E-06 52.1 9.6 128 114-250 17-176 (509)
414 TIGR02768 TraA_Ti Ti-type conj 94.7 0.23 4.9E-06 53.5 10.7 103 129-248 369-474 (744)
415 PRK14530 adenylate kinase; Pro 94.7 0.025 5.5E-07 51.1 3.1 22 129-150 4-25 (215)
416 PRK05688 fliI flagellum-specif 94.7 0.11 2.4E-06 51.9 7.8 90 128-221 168-268 (451)
417 COG3640 CooC CO dehydrogenase 94.7 0.046 9.9E-07 49.2 4.5 21 130-150 2-22 (255)
418 PRK13975 thymidylate kinase; P 94.7 0.029 6.3E-07 49.8 3.3 22 129-150 3-24 (196)
419 TIGR03305 alt_F1F0_F1_bet alte 94.7 0.078 1.7E-06 53.0 6.6 93 128-221 138-242 (449)
420 cd00464 SK Shikimate kinase (S 94.6 0.027 5.9E-07 47.7 2.9 20 131-150 2-21 (154)
421 PRK09280 F0F1 ATP synthase sub 94.6 0.073 1.6E-06 53.3 6.3 93 128-221 144-248 (463)
422 PRK11160 cysteine/glutathione 94.6 0.28 6E-06 51.4 11.0 25 127-151 365-389 (574)
423 PRK11819 putative ABC transpor 94.6 0.57 1.2E-05 48.9 13.3 24 128-151 33-56 (556)
424 TIGR02788 VirB11 P-type DNA tr 94.6 0.11 2.3E-06 49.9 7.3 114 128-255 144-257 (308)
425 KOG1970 Checkpoint RAD17-RFC c 94.6 0.25 5.3E-06 49.9 9.8 39 112-150 89-132 (634)
426 COG2019 AdkA Archaeal adenylat 94.6 0.035 7.6E-07 47.2 3.4 48 128-188 4-52 (189)
427 PF07726 AAA_3: ATPase family 94.6 0.016 3.5E-07 47.3 1.4 27 131-159 2-28 (131)
428 cd01672 TMPK Thymidine monopho 94.6 0.067 1.4E-06 47.3 5.5 21 130-150 2-22 (200)
429 PF06745 KaiC: KaiC; InterPro 94.6 0.025 5.3E-07 51.6 2.7 91 126-220 17-124 (226)
430 TIGR01041 ATP_syn_B_arch ATP s 94.6 0.085 1.8E-06 53.0 6.7 94 128-221 141-248 (458)
431 COG1936 Predicted nucleotide k 94.6 0.027 5.9E-07 48.2 2.7 20 130-149 2-21 (180)
432 PRK09435 membrane ATPase/prote 94.6 0.061 1.3E-06 51.8 5.5 37 114-150 42-78 (332)
433 TIGR00390 hslU ATP-dependent p 94.6 0.13 2.8E-06 50.8 7.7 48 109-158 16-75 (441)
434 PRK11147 ABC transporter ATPas 94.6 0.51 1.1E-05 50.0 12.9 130 128-259 345-505 (635)
435 PRK11650 ugpC glycerol-3-phosp 94.6 0.55 1.2E-05 45.9 12.2 130 128-257 30-201 (356)
436 PRK13948 shikimate kinase; Pro 94.5 0.035 7.5E-07 48.8 3.4 24 127-150 9-32 (182)
437 TIGR01313 therm_gnt_kin carboh 94.5 0.024 5.2E-07 48.7 2.4 20 131-150 1-20 (163)
438 cd02027 APSK Adenosine 5'-phos 94.5 0.027 5.9E-07 47.7 2.7 21 130-150 1-21 (149)
439 PRK13409 putative ATPase RIL; 94.5 0.29 6.3E-06 51.3 10.8 23 128-150 99-121 (590)
440 COG2274 SunT ABC-type bacterio 94.5 0.23 5E-06 52.9 10.1 23 128-150 499-521 (709)
441 COG4181 Predicted ABC-type tra 94.5 0.68 1.5E-05 39.9 10.9 90 170-260 121-216 (228)
442 PRK12339 2-phosphoglycerate ki 94.5 0.036 7.9E-07 49.3 3.5 24 128-151 3-26 (197)
443 PHA02774 E1; Provisional 94.5 0.12 2.5E-06 53.0 7.4 36 114-150 421-456 (613)
444 PRK07721 fliI flagellum-specif 94.5 0.14 3E-06 51.3 8.0 25 127-151 157-181 (438)
445 cd00820 PEPCK_HprK Phosphoenol 94.5 0.038 8.2E-07 43.8 3.1 22 128-149 15-36 (107)
446 TIGR01287 nifH nitrogenase iro 94.5 0.029 6.2E-07 52.8 2.9 22 129-150 1-22 (275)
447 PRK12678 transcription termina 94.5 0.066 1.4E-06 54.6 5.6 100 116-221 405-513 (672)
448 PRK14527 adenylate kinase; Pro 94.5 0.036 7.8E-07 49.1 3.4 25 127-151 5-29 (191)
449 PRK05057 aroK shikimate kinase 94.4 0.035 7.5E-07 48.4 3.2 24 128-151 4-27 (172)
450 PRK11174 cysteine/glutathione 94.4 0.48 1E-05 49.8 12.3 25 127-151 375-399 (588)
451 TIGR01447 recD exodeoxyribonuc 94.4 0.14 3E-06 53.4 8.1 32 214-248 262-293 (586)
452 PRK14737 gmk guanylate kinase; 94.4 0.049 1.1E-06 48.1 4.1 25 127-151 3-27 (186)
453 cd01136 ATPase_flagellum-secre 94.4 0.2 4.4E-06 48.1 8.6 90 128-221 69-169 (326)
454 cd03280 ABC_MutS2 MutS2 homolo 94.4 0.27 5.9E-06 43.8 9.0 22 128-149 28-49 (200)
455 TIGR03497 FliI_clade2 flagella 94.4 0.11 2.3E-06 51.7 6.9 91 127-221 136-237 (413)
456 PRK10636 putative ABC transpor 94.4 0.42 9.1E-06 50.7 11.8 128 128-259 338-495 (638)
457 TIGR00750 lao LAO/AO transport 94.4 0.053 1.2E-06 51.7 4.7 37 114-150 20-56 (300)
458 TIGR00382 clpX endopeptidase C 94.4 0.24 5.2E-06 49.2 9.3 42 109-150 81-138 (413)
459 TIGR01842 type_I_sec_PrtD type 94.4 0.63 1.4E-05 48.4 12.9 25 127-151 343-367 (544)
460 PRK07196 fliI flagellum-specif 94.4 0.16 3.5E-06 50.6 8.0 91 127-221 154-255 (434)
461 COG1066 Sms Predicted ATP-depe 94.4 0.12 2.6E-06 50.3 6.9 99 114-221 79-178 (456)
462 PRK11819 putative ABC transpor 94.4 0.75 1.6E-05 48.0 13.4 130 128-259 350-510 (556)
463 PF05970 PIF1: PIF1-like helic 94.4 0.12 2.6E-06 50.7 7.2 112 114-232 10-123 (364)
464 PRK15064 ABC transporter ATP-b 94.3 0.63 1.4E-05 48.2 12.8 130 128-259 345-503 (530)
465 PRK13946 shikimate kinase; Pro 94.3 0.038 8.3E-07 48.6 3.3 23 128-150 10-32 (184)
466 PRK10733 hflB ATP-dependent me 94.3 0.11 2.4E-06 55.0 7.2 22 129-150 186-207 (644)
467 TIGR03496 FliI_clade1 flagella 94.3 0.13 2.7E-06 51.2 7.2 90 128-221 137-237 (411)
468 PRK06964 DNA polymerase III su 94.3 1.1 2.4E-05 43.5 13.4 47 210-256 131-178 (342)
469 TIGR00176 mobB molybdopterin-g 94.3 0.033 7.1E-07 47.6 2.7 21 130-150 1-21 (155)
470 PLN03073 ABC transporter F fam 94.3 0.56 1.2E-05 50.3 12.5 129 128-258 535-691 (718)
471 PRK06793 fliI flagellum-specif 94.3 0.61 1.3E-05 46.6 11.8 126 128-259 156-294 (432)
472 COG4133 CcmA ABC-type transpor 94.3 0.87 1.9E-05 39.8 11.2 59 196-254 133-193 (209)
473 COG0194 Gmk Guanylate kinase [ 94.3 0.057 1.2E-06 46.9 4.0 25 128-152 4-28 (191)
474 TIGR00073 hypB hydrogenase acc 94.2 0.046 1E-06 49.1 3.6 25 127-151 21-45 (207)
475 PRK09536 btuD corrinoid ABC tr 94.2 0.73 1.6E-05 45.8 12.4 60 198-259 144-207 (402)
476 PLN02348 phosphoribulokinase 94.2 0.058 1.3E-06 52.7 4.5 26 125-150 46-71 (395)
477 PRK06761 hypothetical protein; 94.2 0.085 1.9E-06 49.5 5.5 23 129-151 4-26 (282)
478 TIGR03265 PhnT2 putative 2-ami 94.2 0.81 1.8E-05 44.7 12.5 129 128-258 30-202 (353)
479 PRK11176 lipid transporter ATP 94.2 0.47 1E-05 49.8 11.7 24 127-150 368-391 (582)
480 PF03266 NTPase_1: NTPase; In 94.2 0.038 8.2E-07 47.9 2.9 21 131-151 2-22 (168)
481 cd00544 CobU Adenosylcobinamid 94.2 0.14 2.9E-06 44.5 6.3 81 131-220 2-82 (169)
482 PRK05922 type III secretion sy 94.2 0.19 4.1E-06 50.1 8.1 90 128-221 157-257 (434)
483 KOG0736 Peroxisome assembly fa 94.2 0.58 1.3E-05 49.2 11.7 89 109-221 676-774 (953)
484 PRK13657 cyclic beta-1,2-gluca 94.2 0.59 1.3E-05 49.1 12.4 24 127-150 360-383 (588)
485 PRK11607 potG putrescine trans 94.2 0.82 1.8E-05 45.1 12.6 132 128-259 45-218 (377)
486 cd02117 NifH_like This family 94.2 0.038 8.3E-07 49.8 3.0 22 129-150 1-22 (212)
487 PRK10820 DNA-binding transcrip 94.2 0.24 5.2E-06 51.1 9.2 43 109-151 208-250 (520)
488 COG1119 ModF ABC-type molybden 94.2 0.33 7.2E-06 44.1 8.8 22 130-151 59-80 (257)
489 PRK04182 cytidylate kinase; Pr 94.2 0.042 9E-07 47.8 3.2 21 130-150 2-22 (180)
490 TIGR03796 NHPM_micro_ABC1 NHPM 94.2 0.59 1.3E-05 50.3 12.5 24 127-150 504-527 (710)
491 PRK13230 nitrogenase reductase 94.2 0.039 8.5E-07 52.0 3.2 22 129-150 2-23 (279)
492 TIGR02203 MsbA_lipidA lipid A 94.2 0.49 1.1E-05 49.5 11.7 24 127-150 357-380 (571)
493 TIGR03719 ABC_ABC_ChvD ATP-bin 94.1 0.79 1.7E-05 47.7 13.1 125 130-259 350-508 (552)
494 PRK06871 DNA polymerase III su 94.1 1.2 2.6E-05 42.9 13.2 130 114-251 11-147 (325)
495 PLN02200 adenylate kinase fami 94.1 0.048 1E-06 50.0 3.5 24 127-150 42-65 (234)
496 PRK10522 multidrug transporter 94.1 0.64 1.4E-05 48.4 12.3 24 127-150 348-371 (547)
497 PRK06090 DNA polymerase III su 94.1 1.3 2.8E-05 42.6 13.3 132 114-258 12-156 (319)
498 PRK05201 hslU ATP-dependent pr 94.1 0.13 2.9E-06 50.8 6.7 42 109-150 19-72 (443)
499 PF00005 ABC_tran: ABC transpo 94.1 0.043 9.4E-07 45.4 3.0 23 128-150 11-33 (137)
500 cd04139 RalA_RalB RalA/RalB su 94.1 0.053 1.2E-06 46.0 3.6 23 130-152 2-24 (164)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-61 Score=505.77 Aligned_cols=404 Identities=21% Similarity=0.277 Sum_probs=324.1
Q ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHhhHHHHHHhhhhhhhcccCCCCc-----chhhHhh---H-------HHHHHHH
Q 042081 4 RYRQLLHLENVKRTDIWELLKDINYFVRESEKAIDTFFINITQQQNSESE-----STTCIAL---L-------VGIHSKI 68 (422)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~-----~~~~~~~---~-------~~~~~~i 68 (422)
++...++........++.|...+++++|++||.++.|.......+..+.. ..+..++ . +++.+++
T Consensus 42 ~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv 121 (889)
T KOG4658|consen 42 SALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRV 121 (889)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHH
Confidence 34455677777888999999999999999999999999877665333211 1111111 1 4555555
Q ss_pred HHHHHHHhccCCCCCCCCccCCCccccccccccCCCCCc--hhhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHH
Q 042081 69 IDIRNRLQQLPPGDNGFDFKERRNEFTHLLIEGQFQLDK--SEFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAA 146 (422)
Q Consensus 69 ~~l~~rl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~ 146 (422)
-.+...++.+..... +.....+... +..+.+.|..++ .|.+..++++++.|.+++ ..+++|+||||+||||||+
T Consensus 122 ~~~l~~ve~l~~~~~-~~~~~~~~~~-~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~ 197 (889)
T KOG4658|consen 122 SKVLREVESLGSKGV-FEVVGESLDP-REKVETRPIQSESDVGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLAR 197 (889)
T ss_pred HHHHHHHHHhccccc-eecccccccc-hhhcccCCCCccccccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHH
Confidence 555555555442221 1111101111 333455555555 399999999999999987 3999999999999999999
Q ss_pred HHHcCCC-ccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCCh
Q 042081 147 DTYNNNH-VKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESD 225 (422)
Q Consensus 147 ~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~ 225 (422)
+++|+.. ++++|+.++||+||+.|+...++++|+..++..... .......+++..|.+.|++||||||||||| +.
T Consensus 198 qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDIW--~~ 273 (889)
T KOG4658|consen 198 QIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE--WEDKEEDELASKLLNLLEGKRFLLVLDDIW--EE 273 (889)
T ss_pred HHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc--cchhhHHHHHHHHHHHhccCceEEEEeccc--cc
Confidence 9999987 999999999999999999999999999999875442 111344799999999999999999999999 88
Q ss_pred hHHHHHHhhcCCCCCCcEEEEeecChhHhhh-cccCCCCCcc--------------------------------------
Q 042081 226 DVLDDLEEVLPENQNGSRVLMTVTDPDFLSS-FDLENGQTIH-------------------------------------- 266 (422)
Q Consensus 226 ~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~-~~~~~~~~~~-------------------------------------- 266 (422)
.+|+.+..++|...+||||++|||++.||.. ++......+.
T Consensus 274 ~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~ 353 (889)
T KOG4658|consen 274 VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCG 353 (889)
T ss_pred ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhC
Confidence 8999999999998889999999999999999 6654322221
Q ss_pred --c-hHHHhhhhccCCChH-HHHHHHHHhccccccc--ccchhhhhhhhhHhhhhcCCchhhHHHHHHhhhcCCCceech
Q 042081 267 --P-DSVLVGGPLIRLKHE-AWQFFILHYGKTTLRI--YMGEKAFLTAWSTIYSVLELPVHLKICCLYLCLFHPGIEIST 340 (422)
Q Consensus 267 --P-ai~~~g~~L~~~~~~-~w~~~~~~~~~~~~~~--~~~~~i~~~~~~l~~sy~~Lp~~~k~cfl~ls~Fp~~~~i~~ 340 (422)
| |++++|+.|+.+... +|+++.+.+.+.+..+ ...+.+ .++ |.+||++||+++|.||+|||+||+||.|++
T Consensus 354 GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i-~~i--LklSyd~L~~~lK~CFLycalFPED~~I~~ 430 (889)
T KOG4658|consen 354 GLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI-LPI--LKLSYDNLPEELKSCFLYCALFPEDYEIKK 430 (889)
T ss_pred ChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh-HHh--hhccHhhhhHHHHHHHHhhccCCcccccch
Confidence 9 999999999999999 9999999998773332 235577 899 999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCCCC-----hHHHHHHHHHHHHHCCceeeeecCCCCceeeEEcCHHHHHHHHHhch-----hcCeeec
Q 042081 341 RQLYWLWVAEGFIPHN-----SEETAEHYLNELIDRGFIQVKKRRAGGTIKACYVPTFAYVALLLPAA-----LTGFFWS 410 (422)
Q Consensus 341 ~~Li~~W~aeg~i~~~-----~e~~~~~~l~~Lv~r~ll~~~~~~~~g~~~~~~~Hdlv~~~a~~~~~-----~~~f~~~ 410 (422)
+.|+.+|+||||+.+. .++.|+.|+++|++++|++..+.. ++..+|+|||+|||+|..+|+ ++++++.
T Consensus 431 e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~ 508 (889)
T KOG4658|consen 431 EKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVS 508 (889)
T ss_pred HHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEE
Confidence 9999999999999773 789999999999999999987754 666899999999999999999 8888888
Q ss_pred CCCCcccccc
Q 042081 411 PGLEEESMAN 420 (422)
Q Consensus 411 ~~~~~~~~~~ 420 (422)
.+-+.+..++
T Consensus 509 ~~~~~~~~~~ 518 (889)
T KOG4658|consen 509 DGVGLSEIPQ 518 (889)
T ss_pred CCcCcccccc
Confidence 8744444544
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.4e-41 Score=317.70 Aligned_cols=240 Identities=28% Similarity=0.436 Sum_probs=193.7
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 042081 110 FESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV 189 (422)
Q Consensus 110 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 189 (422)
||.++++|.+.|....++.++|+|+||||+||||||..++++..++.+|+.++|+.++...+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999667799999999999999999999999766899999999999999999999999999999988542
Q ss_pred CccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhccc-CCCCCcc--
Q 042081 190 SVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDL-ENGQTIH-- 266 (422)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~-~~~~~~~-- 266 (422)
. ....+.+++...+.+.|.++++|||||||| +...|+.+...++....||+||||||+..++..++. ...+.+.
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVW--DEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE---SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred c-ccccccccccccchhhhccccceeeeeeec--cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 123688889999999999999999999999 999999999888877789999999999998876653 1100110
Q ss_pred --------------------------------------c-hHHHhhhhccCCChH-HHHHHHHHhccccccc-ccchhhh
Q 042081 267 --------------------------------------P-DSVLVGGPLIRLKHE-AWQFFILHYGKTTLRI-YMGEKAF 305 (422)
Q Consensus 267 --------------------------------------P-ai~~~g~~L~~~~~~-~w~~~~~~~~~~~~~~-~~~~~i~ 305 (422)
| |++++|++|+.+... +|..+++.+....... .....+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~- 236 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV- 236 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 9 999999999665544 9999999887665432 234567
Q ss_pred hhhhhHhhhhcCCchhhHHHHHHhhhcCCCceechhHHHHHHHHcCCCCC
Q 042081 306 LTAWSTIYSVLELPVHLKICCLYLCLFHPGIEISTRQLYWLWVAEGFIPH 355 (422)
Q Consensus 306 ~~~~~l~~sy~~Lp~~~k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~ 355 (422)
..+ +.+||+.||+++|+||+|||+||+++.|+++.|+++|++||||.+
T Consensus 237 ~~~--l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSA--LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHH--HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccc--ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 788 999999999999999999999999999999999999999999976
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.1e-33 Score=309.45 Aligned_cols=263 Identities=18% Similarity=0.218 Sum_probs=203.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe---CCC-----------CC-HH
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV---SIA-----------YN-FR 173 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~ 173 (422)
||+..+++|..+|.-+.+.+++|+|+||||+||||||+.+|+ ++..+|++.+|+.. +.. ++ ..
T Consensus 188 G~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~ 265 (1153)
T PLN03210 188 GIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKL 265 (1153)
T ss_pred chHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhH
Confidence 999999999999876666799999999999999999999999 78889998887642 111 11 12
Q ss_pred HHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhH
Q 042081 174 MILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDF 253 (422)
Q Consensus 174 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 253 (422)
.+...++.++........ .. ...+++.|++||+|||||||| +...|+.+.......++||+||||||++.+
T Consensus 266 ~l~~~~l~~il~~~~~~~---~~----~~~~~~~L~~krvLLVLDdv~--~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 266 HLQRAFLSEILDKKDIKI---YH----LGAMEERLKHRKVLIFIDDLD--DQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred HHHHHHHHHHhCCCCccc---CC----HHHHHHHHhCCeEEEEEeCCC--CHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 344555555543322110 11 245778899999999999999 899999998766666789999999999999
Q ss_pred hhhcccCCCCCcc---------------------------------------c-hHHHhhhhccCCChHHHHHHHHHhcc
Q 042081 254 LSSFDLENGQTIH---------------------------------------P-DSVLVGGPLIRLKHEAWQFFILHYGK 293 (422)
Q Consensus 254 a~~~~~~~~~~~~---------------------------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~ 293 (422)
+..++....+.+. | |++++|++|+.++..+|+.+++++..
T Consensus 337 l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 337 LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRN 416 (1153)
T ss_pred HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 8765433111110 9 99999999999876699999999865
Q ss_pred cccccccchhhhhhhhhHhhhhcCCch-hhHHHHHHhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHCC
Q 042081 294 TTLRIYMGEKAFLTAWSTIYSVLELPV-HLKICCLYLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLNELIDRG 372 (422)
Q Consensus 294 ~~~~~~~~~~i~~~~~~l~~sy~~Lp~-~~k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~r~ 372 (422)
... .++ ..+ |++||++|++ ..|.||+++|.||.+..++ .+..|++++.... +.-++.|+++|
T Consensus 417 ~~~-----~~I-~~~--L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------~~~l~~L~~ks 479 (1153)
T PLN03210 417 GLD-----GKI-EKT--LRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------NIGLKNLVDKS 479 (1153)
T ss_pred Ccc-----HHH-HHH--HHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc------hhChHHHHhcC
Confidence 432 357 788 9999999987 5999999999999987654 4778888775542 23489999999
Q ss_pred ceeeeecCCCCceeeEEcCHHHHHHHHHhchhcC
Q 042081 373 FIQVKKRRAGGTIKACYVPTFAYVALLLPAALTG 406 (422)
Q Consensus 373 ll~~~~~~~~g~~~~~~~Hdlv~~~a~~~~~~~~ 406 (422)
|++... ..|.|||++|++|+.+++++.
T Consensus 480 Li~~~~-------~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 480 LIHVRE-------DIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred CEEEcC-------CeEEhhhHHHHHHHHHHHhhc
Confidence 998743 259999999999999987763
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=2.1e-09 Score=118.11 Aligned_cols=259 Identities=11% Similarity=0.086 Sum_probs=141.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCcc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRVSVV 192 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~ 192 (422)
...|.+.|... ...+++.|+|++|.||||++...... ++.++|+++... .++..++..++..+........+
T Consensus 19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~ 91 (903)
T PRK04841 19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCS 91 (903)
T ss_pred chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccc
Confidence 34555555443 35789999999999999999998752 236899999754 45666777777777422111000
Q ss_pred ---------CCCCHHHHHHHHHHhcC--CceEEEEEeCCCCCChhHHH-HHHhhcCCCCCCcEEEEeecChhHhh--hcc
Q 042081 193 ---------IGEDYQLKKSILRDYLT--NKKYFIVLDDYCEESDDVLD-DLEEVLPENQNGSRVLMTVTDPDFLS--SFD 258 (422)
Q Consensus 193 ---------~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~~~-~l~~~l~~~~~gs~ilvTTR~~~va~--~~~ 258 (422)
...+...+...+...+. +.+++|||||+..-+..... .+...++....+.++|||||...-.. ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~ 171 (903)
T PRK04841 92 KSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLR 171 (903)
T ss_pred hhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHH
Confidence 00223334444444443 67999999999643323323 33333333445678889999842110 000
Q ss_pred cCC-CCC------cc--------------------------------c-hHHHhhhhccCCChHHHHHHHHHhccccccc
Q 042081 259 LEN-GQT------IH--------------------------------P-DSVLVGGPLIRLKHEAWQFFILHYGKTTLRI 298 (422)
Q Consensus 259 ~~~-~~~------~~--------------------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~~~~~~ 298 (422)
... ... .+ | ++..++..++..+.. ....... ....
T Consensus 172 ~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~----~~~~ 246 (903)
T PRK04841 172 VRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARR----LAGI 246 (903)
T ss_pred hcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHh----hcCC
Confidence 000 000 11 3 333332222111100 0000000 0000
Q ss_pred ccchhhhhhhhhHhh-hhcCCchhhHHHHHHhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCceeee
Q 042081 299 YMGEKAFLTAWSTIY-SVLELPVHLKICCLYLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLNELIDRGFIQVK 377 (422)
Q Consensus 299 ~~~~~i~~~~~~l~~-sy~~Lp~~~k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~r~ll~~~ 377 (422)
....+ ... +.- -++.||++.+..++..|+++ .++.+.+-. +.. ...+...+++|.+++++...
T Consensus 247 -~~~~~-~~~--l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~---~~~~~~~L~~l~~~~l~~~~ 310 (903)
T PRK04841 247 -NASHL-SDY--LVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTG---EENGQMRLEELERQGLFIQR 310 (903)
T ss_pred -CchhH-HHH--HHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcC---CCcHHHHHHHHHHCCCeeEe
Confidence 00123 222 333 37899999999999999997 334332221 111 23467889999999997643
Q ss_pred ecCCCCceeeEEcCHHHHHHHHHhch
Q 042081 378 KRRAGGTIKACYVPTFAYVALLLPAA 403 (422)
Q Consensus 378 ~~~~~g~~~~~~~Hdlv~~~a~~~~~ 403 (422)
..+ .+ ..|+.|++++++++....
T Consensus 311 ~~~-~~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 311 MDD-SG--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ecC-CC--CEEehhHHHHHHHHHHHH
Confidence 211 11 468999999999987753
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.10 E-value=4.6e-08 Score=97.23 Aligned_cols=279 Identities=19% Similarity=0.148 Sum_probs=150.9
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhC
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSIAYNFRMILDDIIKSVM 184 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~ 184 (422)
||++++++|...|... +.....+.|+|++|+|||++++.++++ ..... -..++++.....+...++..|+.++.
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 9999999999998553 234556789999999999999999984 32222 23455666666678889999999997
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCC----ChhHHHHHHhhcCCCCCCcE--EEEeecChhHhhh
Q 042081 185 PPSRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEE----SDDVLDDLEEVLPENQNGSR--VLMTVTDPDFLSS 256 (422)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~----~~~~~~~l~~~l~~~~~gs~--ilvTTR~~~va~~ 256 (422)
..... ....+..++...+.+.+. ++..+||||+++.- ..+.+..+...+... .+++ +|.++....+...
T Consensus 112 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 112 GHPPP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTFLYI 188 (394)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcchhhh
Confidence 63211 112456777778877775 45789999999731 123444444433322 2333 5666665443322
Q ss_pred ccc----C-CCCCcc---------------------------c-hHHHhhhhccC-CChH-HHHHHHHHhc-ccc-cccc
Q 042081 257 FDL----E-NGQTIH---------------------------P-DSVLVGGPLIR-LKHE-AWQFFILHYG-KTT-LRIY 299 (422)
Q Consensus 257 ~~~----~-~~~~~~---------------------------P-ai~~~g~~L~~-~~~~-~w~~~~~~~~-~~~-~~~~ 299 (422)
... . ....++ | ++..++..-.. ..+. ..-.++.... ... ...+
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~ 268 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR 268 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence 111 0 000111 2 33333332211 0100 0001111100 000 0000
Q ss_pred --cchhhhhhh----h-h-HhhhhcCCchhhHHHHHHhhhc-CC-CceechhHHHHH--HHHcCCCCCC-hHHHHHHHHH
Q 042081 300 --MGEKAFLTA----W-S-TIYSVLELPVHLKICCLYLCLF-HP-GIEISTRQLYWL--WVAEGFIPHN-SEETAEHYLN 366 (422)
Q Consensus 300 --~~~~i~~~~----~-~-l~~sy~~Lp~~~k~cfl~ls~F-p~-~~~i~~~~Li~~--W~aeg~i~~~-~e~~~~~~l~ 366 (422)
....+ ..+ . + +.-.+..||.+.|..+..++.. .. ...+....+... .+++.+-... .......|++
T Consensus 269 ~I~~~~v-~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~ 347 (394)
T PRK00411 269 KVTEEDV-RKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYIN 347 (394)
T ss_pred CcCHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 11111 111 0 0 4455788999877766555432 21 134555555432 3343222111 3456678999
Q ss_pred HHHHCCceeeeec--CCCCceeeEEcCHH
Q 042081 367 ELIDRGFIQVKKR--RAGGTIKACYVPTF 393 (422)
Q Consensus 367 ~Lv~r~ll~~~~~--~~~g~~~~~~~Hdl 393 (422)
.|.+.|+|..... +..|+.+.++++.-
T Consensus 348 ~L~~~glI~~~~~~~g~~g~~~~~~~~~~ 376 (394)
T PRK00411 348 KLDMLGIINTRYSGKGGRGRTRLISLSYD 376 (394)
T ss_pred HHHhcCCeEEEEecCCCCCCeEEEEecCC
Confidence 9999999987643 44577677766543
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.01 E-value=2.1e-07 Score=91.54 Aligned_cols=112 Identities=19% Similarity=0.100 Sum_probs=77.9
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc------ceeEEEEeCCCCCHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF------DCHAWVRVSIAYNFRMILDDII 180 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~il 180 (422)
||++++++|...|... +.....+.|+|++|+|||++++.+++. +.... -..+|++.....+...++..|+
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999998752 234567899999999999999999973 22111 1356677666667788999999
Q ss_pred HHhCCCCCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCC
Q 042081 181 KSVMPPSRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCE 222 (422)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~ 222 (422)
.++............+..++...+.+.+. +++++||||+++.
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 99852110001112345566666666663 5688999999973
No 7
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.93 E-value=8.5e-08 Score=98.98 Aligned_cols=262 Identities=16% Similarity=0.100 Sum_probs=152.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC---
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPSRV--- 189 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~--- 189 (422)
..+|++.|.... +.+++.|..++|.|||||+.+... .... =..+.|.+.+.+. ++...+..++..++...+.
T Consensus 24 R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 556777776653 589999999999999999999875 2211 2348999998654 5677888888777643221
Q ss_pred ------CccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcccC
Q 042081 190 ------SVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDLE 260 (422)
Q Consensus 190 ------~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~~ 260 (422)
......+...+...+..-+. .++..+||||..-. ++..-..+...+.....+-.+|||||..--.......
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 00112455556666666555 36899999996432 3333333444444445678899999986322111110
Q ss_pred CCCCcc-----------------------------------------c-hHHHhhhhccCCChHHHHHHHHHhccccccc
Q 042081 261 NGQTIH-----------------------------------------P-DSVLVGGPLIRLKHEAWQFFILHYGKTTLRI 298 (422)
Q Consensus 261 ~~~~~~-----------------------------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~~~~~~ 298 (422)
-...+. + |+..++=.++.+.+. ......+.
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~--~q~~~~Ls------ 251 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSA--EQSLRGLS------ 251 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcH--HHHhhhcc------
Confidence 000000 2 222222222211100 00000000
Q ss_pred ccchhhhhhhhhHhhhhcCCchhhHHHHHHhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCceeeee
Q 042081 299 YMGEKAFLTAWSTIYSVLELPVHLKICCLYLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLNELIDRGFIQVKK 378 (422)
Q Consensus 299 ~~~~~i~~~~~~l~~sy~~Lp~~~k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~r~ll~~~~ 378 (422)
..-..+.--. ..--++.||++++..++-||+++.-. ..|+..-.. ++.+...+++|-+++|+-..-
T Consensus 252 G~~~~l~dYL--~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~Ltg--------~~ng~amLe~L~~~gLFl~~L 317 (894)
T COG2909 252 GAASHLSDYL--VEEVLDRLPPELRDFLLQTSVLSRFN----DELCNALTG--------EENGQAMLEELERRGLFLQRL 317 (894)
T ss_pred chHHHHHHHH--HHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHHhc--------CCcHHHHHHHHHhCCCceeee
Confidence 0000010001 23346889999999999999998633 334443322 567888999999999987544
Q ss_pred cCCCCceeeEEcCHHHHHHHHHhchh
Q 042081 379 RRAGGTIKACYVPTFAYVALLLPAAL 404 (422)
Q Consensus 379 ~~~~g~~~~~~~Hdlv~~~a~~~~~~ 404 (422)
.+.. ..|+.|.++.||.+.....
T Consensus 318 dd~~---~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 318 DDEG---QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred cCCC---ceeehhHHHHHHHHhhhcc
Confidence 3322 5799999999999876543
No 8
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.69 E-value=4.8e-08 Score=81.08 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=80.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCC-----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFY-----FDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKK 201 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 201 (422)
+-+.+.|+|.+|+|||++++.+.++ .... -...+|+......+...+...|+..++..... ..+..++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHH
Confidence 3578999999999999999999883 2221 23467998888779999999999999987653 25677888
Q ss_pred HHHHHhcCCc-eEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 202 SILRDYLTNK-KYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 202 ~~l~~~L~~k-r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
..+.+.+... ..+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8888888765 459999999743 3444555544433 556777776654
No 9
>PF05729 NACHT: NACHT domain
Probab=98.67 E-value=6.1e-08 Score=83.71 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCC----cceeEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCccCCCCHHHHH
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSIAYNFR---MILDDIIKSVMPPSRVSVVIGEDYQLKK 201 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~~ 201 (422)
+++.|+|.+|+||||+++.++..-..... +...+|++........ .+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 57899999999999999999874322222 4456677665433322 333333333332211 1111
Q ss_pred HHHHHhc-CCceEEEEEeCCCCCCh--h-----HHHHHH-hhcCC-CCCCcEEEEeecChhH
Q 042081 202 SILRDYL-TNKKYFIVLDDYCEESD--D-----VLDDLE-EVLPE-NQNGSRVLMTVTDPDF 253 (422)
Q Consensus 202 ~~l~~~L-~~kr~LlVLDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~ilvTTR~~~v 253 (422)
.+...+ ..+++|||||++.+... . .+..+. ..++. ...++++|||||....
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 222222 46899999999864221 1 133333 33332 2468999999998765
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.66 E-value=8e-07 Score=83.48 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=71.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
+.......+...+.. ...++.|+|.+|+|||||++.+++.... ..+ ...|+ +....+..+++..|+..++.+..
T Consensus 27 ~~~~~~~~l~~~~~~---~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~ 100 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQ---REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE 100 (269)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC
Confidence 444444444433332 3568899999999999999999985331 111 12233 33445778889999988876533
Q ss_pred CCccCCCCHHHHHHHHHH----h-cCCceEEEEEeCCCCCChhHHHHHHh
Q 042081 189 VSVVIGEDYQLKKSILRD----Y-LTNKKYFIVLDDYCEESDDVLDDLEE 233 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~----~-L~~kr~LlVLDdv~~~~~~~~~~l~~ 233 (422)
. .+...+...+.. . ..+++++||+||++.-+...++.+..
T Consensus 101 ~-----~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 101 G-----RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred C-----CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 2 222333333333 2 26788999999998656666776654
No 11
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.60 E-value=6.4e-07 Score=75.11 Aligned_cols=124 Identities=16% Similarity=0.052 Sum_probs=70.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|++..+..+...+.... ...+.|+|.+|+|||++++.+++. ....-...+++...+..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 2 GQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred chHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 67778888888876543 567889999999999999999984 32212235566554433222111110000
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCC------CCCcEEEEeecChh
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPEN------QNGSRVLMTVTDPD 252 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~------~~gs~ilvTTR~~~ 252 (422)
............+..+||+||++.-.......+...+... ..+..||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999732122333333333221 35788888888654
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.59 E-value=1e-06 Score=84.50 Aligned_cols=243 Identities=16% Similarity=0.082 Sum_probs=122.8
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
|++..++.|..++... ......+.++|++|+|||+||+.+.+. ....|. .+..+..... ..+...+..+..
T Consensus 8 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~-~~l~~~l~~~~~ 81 (305)
T TIGR00635 8 GQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKP-GDLAAILTNLEE 81 (305)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCc-hhHHHHHHhccc
Confidence 9999999999888642 233566889999999999999999983 332221 1211111111 222233333332
Q ss_pred CCCCCcc--CCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhh----ccc
Q 042081 186 PSRVSVV--IGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSS----FDL 259 (422)
Q Consensus 186 ~~~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~----~~~ 259 (422)
..---+. +... ......+...+.+.+..+|+++.. +...+. ..+| +.+-|..||+...+... ++.
T Consensus 82 ~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~--~~~~~~---~~~~---~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 82 GDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGP--SARSVR---LDLP---PFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred CCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCc--ccccee---ecCC---CeEEEEecCCccccCHHHHhhcce
Confidence 2100000 0011 123445666666666777777665 332221 1222 24556667776433322 211
Q ss_pred CCCCCcc---------------------c-hHHHhhhhccCCChHHHHHHHHHhcc-------cccccccchhhhhhhhh
Q 042081 260 ENGQTIH---------------------P-DSVLVGGPLIRLKHEAWQFFILHYGK-------TTLRIYMGEKAFLTAWS 310 (422)
Q Consensus 260 ~~~~~~~---------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~-------~~~~~~~~~~i~~~~~~ 310 (422)
......+ | ++..++..-...+.. -..+++.+.. .....+..... ...
T Consensus 153 ~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~-~~~ll~~~~~~a~~~~~~~it~~~v~~~-l~~-- 228 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRI-ANRLLRRVRDFAQVRGQKIINRDIALKA-LEM-- 228 (305)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHcCCCCcCHHHHHHH-HHH--
Confidence 1000001 5 666666554444432 1222222110 00011111223 333
Q ss_pred HhhhhcCCchhhHHHHH-HhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHH-HHHHCCceeeee
Q 042081 311 TIYSVLELPVHLKICCL-YLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLN-ELIDRGFIQVKK 378 (422)
Q Consensus 311 l~~sy~~Lp~~~k~cfl-~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~-~Lv~r~ll~~~~ 378 (422)
+..+|..|+++.+..+. .+..++.+ .+..+.+.... | . ....++..++ .|++.+||....
T Consensus 229 l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--~--~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 229 LMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--E--DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--C--CcchHHHhhhHHHHHcCCcccCC
Confidence 66678888888777666 55667644 45544433322 1 1 2567888888 699999997544
No 13
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=1.3e-07 Score=87.26 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=62.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCccCC--CCHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA--YNFRMILDDIIKSVMPPSRVSVVIG--EDYQLKKSI 203 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~~~--~~~~~~~~~ 203 (422)
-..++|+|.+|+|||||++.++++.... +|+..+|+.+.+. +++.++++.+...+-.......+.. .-.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999965444 8999999997766 7899999998333322221110100 111122223
Q ss_pred HHHh-cCCceEEEEEeCCC
Q 042081 204 LRDY-LTNKKYFIVLDDYC 221 (422)
Q Consensus 204 l~~~-L~~kr~LlVLDdv~ 221 (422)
...+ -.|++.+|++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 3322 24799999999985
No 14
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=2.7e-07 Score=76.46 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=68.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
-+++.|.|+.|+|||||+++++.+.. ....+++++......... .+.+ +.+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~--------------------~~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRL--------------------ADPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHH--------------------hhhh-hHHHHHHh
Confidence 46899999999999999999997422 223456665544322110 0000 23334444
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 208 LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
...+..+|+||++. ....|......+.+.....+|++|+.......
T Consensus 58 ~~~~~~~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred hccCCcEEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 44477889999998 77788888877776556789999999876654
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.48 E-value=3.7e-06 Score=81.43 Aligned_cols=244 Identities=15% Similarity=0.064 Sum_probs=122.7
Q ss_pred hhhhhHHHHHHHHhc---CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 109 EFESGREELFDLLIE---GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
|+++.++.+..++.. .......+.|+|++|+|||+||+.+++. ....+ ..+..+ .......+..++..+..
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~~l~~ 102 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILTNLEE 102 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHHhccc
Confidence 999999998888764 2334667889999999999999999983 33222 112111 11222223344443322
Q ss_pred CCCCCccCCCC-HHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhh----cccC
Q 042081 186 PSRVSVVIGED-YQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSS----FDLE 260 (422)
Q Consensus 186 ~~~~~~~~~~~-~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~----~~~~ 260 (422)
..---+.+... .....+.+...+.+.+..+|+|+.. +... +...+| +.+-|..||+...+... ++..
T Consensus 103 ~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~--~~~~---~~~~l~---~~~li~at~~~~~l~~~L~sRf~~~ 174 (328)
T PRK00080 103 GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGP--AARS---IRLDLP---PFTLIGATTRAGLLTSPLRDRFGIV 174 (328)
T ss_pred CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCc--cccc---eeecCC---CceEEeecCCcccCCHHHHHhcCee
Confidence 11000000000 0112333444555555566666544 2211 111122 24556667775443322 2211
Q ss_pred CCCCcc---------------------c-hHHHhhhhccCCChHHHHHHHHHhc-------ccccccccchhhhhhhhhH
Q 042081 261 NGQTIH---------------------P-DSVLVGGPLIRLKHEAWQFFILHYG-------KTTLRIYMGEKAFLTAWST 311 (422)
Q Consensus 261 ~~~~~~---------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~-------~~~~~~~~~~~i~~~~~~l 311 (422)
.....+ | ++..++..-+..+.. ...+++... ...-........ ... +
T Consensus 175 ~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~-a~~~l~~~~~~a~~~~~~~I~~~~v~~~-l~~--~ 250 (328)
T PRK00080 175 QRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRI-ANRLLRRVRDFAQVKGDGVITKEIADKA-LDM--L 250 (328)
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHcCCCCCCHHHHHHH-HHH--h
Confidence 100111 5 666666655554432 222222211 000011112223 334 6
Q ss_pred hhhhcCCchhhHHHHH-HhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHH-HHHHCCceeeee
Q 042081 312 IYSVLELPVHLKICCL-YLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLN-ELIDRGFIQVKK 378 (422)
Q Consensus 312 ~~sy~~Lp~~~k~cfl-~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~-~Lv~r~ll~~~~ 378 (422)
...+..|++..+..+. ....|+.+ .+..+.+.... .. ....+++.++ .|++.+|++...
T Consensus 251 ~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~-~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 251 GVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE-ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC-CcchHHHHhhHHHHHcCCcccCC
Confidence 6677888887777665 66778766 46655553332 11 2567777888 999999997544
No 16
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.44 E-value=3.6e-07 Score=80.53 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHhc-CCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE-GQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
||++++++|...|.. .....+.+.|+|.+|+|||+|.+.++..
T Consensus 4 gR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 4 GREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp T-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999942 2345799999999999999999999883
No 17
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.43 E-value=2.5e-07 Score=89.20 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=65.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCccC
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY--NFRMILDDIIKSVMPPSRVSVVI 193 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~ 193 (422)
++++.+..-. .-+-..|+|.+|+||||||+.||++.... +|+..+||.+.+.. ++.++++.+...+-.......+.
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 4555555422 24567899999999999999999964444 89999999998887 67777777763222221111110
Q ss_pred C--CCHHHHHHHHHHh-cCCceEEEEEeCCC
Q 042081 194 G--EDYQLKKSILRDY-LTNKKYFIVLDDYC 221 (422)
Q Consensus 194 ~--~~~~~~~~~l~~~-L~~kr~LlVLDdv~ 221 (422)
. .-.......-..+ -.|+++||++|++.
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 0 0011111111111 36899999999985
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.34 E-value=0.00019 Score=75.66 Aligned_cols=110 Identities=11% Similarity=-0.029 Sum_probs=74.0
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcCCC---ccCCcc--eeEEEEeCCCCCHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYNNNH---VKFYFD--CHAWVRVSIAYNFRMILDDII 180 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~~F~--~~~wv~vs~~~~~~~~~~~il 180 (422)
||++++++|...|... .....++-|.|++|.|||++++.|...-. -+...+ ..++|....-.++..++..|.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~ 838 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLY 838 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHH
Confidence 9999999999988753 22346778999999999999999986311 011222 245666555567888899999
Q ss_pred HHhCCCCCCCccCCCCHHHHHHHHHHhcC---CceEEEEEeCCC
Q 042081 181 KSVMPPSRVSVVIGEDYQLKKSILRDYLT---NKKYFIVLDDYC 221 (422)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~ 221 (422)
.++.+... +.+....+....+...+. +...+||||++.
T Consensus 839 qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 839 KQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence 98855432 223344455555555542 234689999986
No 19
>PTZ00202 tuzin; Provisional
Probab=98.27 E-value=5.2e-05 Score=74.04 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=80.6
Q ss_pred hhhhhHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQ-PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
||+.+...|...|...+ ...+++.|+|++|+|||||++.+..... +. ...++.. +..+++..|+.+|+.+.
T Consensus 266 GReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElLr~LL~ALGV~p 337 (550)
T PTZ00202 266 SREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTLRSVVKALGVPN 337 (550)
T ss_pred CcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHHHHHHHHcCCCC
Confidence 99999999999987532 2456999999999999999999987322 21 2233222 67999999999999743
Q ss_pred CCCccCCCCHHHHHHHHHHhc-C-CceEEEEEeCCCCCChhHHHHHH---hhcCCCCCCcEEEEeecChhH
Q 042081 188 RVSVVIGEDYQLKKSILRDYL-T-NKKYFIVLDDYCEESDDVLDDLE---EVLPENQNGSRVLMTVTDPDF 253 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVLDdv~~~~~~~~~~l~---~~l~~~~~gs~ilvTTR~~~v 253 (422)
.. ....-...+.+.+.+.- . |++.+||+-=- +.+.+..+. -.|.....-|.|++---.+.+
T Consensus 338 ~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr---eg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 338 VE--ACGDLLDFISEACRRAKKMNGETPLLVLKLR---EGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred cc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEec---CCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 31 00112233333333332 2 66777777422 222222221 133344456778776555444
No 20
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.18 E-value=7.2e-06 Score=74.82 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
||++++++|.+.+..+. .+.+.|+|+.|+|||+|++.+.+.
T Consensus 3 gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 3 GREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 89999999999988753 678899999999999999999983
No 21
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.15 E-value=6.1e-06 Score=80.10 Aligned_cols=93 Identities=10% Similarity=-0.055 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCccCC--CCHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA--YNFRMILDDIIKSVMPPSRVSVVIG--EDYQLKKSI 203 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~~~--~~~~~~~~~ 203 (422)
-..++|+|.+|.|||||++.+++.-.. ++|+..+|+.+.+. .++.++++.++..+-.......+.. .-.......
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 467899999999999999999995333 37999999998865 7888999988654433322211100 001112222
Q ss_pred HHHh-cCCceEEEEEeCCC
Q 042081 204 LRDY-LTNKKYFIVLDDYC 221 (422)
Q Consensus 204 l~~~-L~~kr~LlVLDdv~ 221 (422)
...+ -.|++++|++|.+.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 2222 35899999999885
No 22
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.8e-05 Score=77.27 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=83.6
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce--eEEEEeCCCCCHHHHHHHHHHHhC
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC--HAWVRVSIAYNFRMILDDIIKSVM 184 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il~~l~ 184 (422)
+|+++++++...|..- +..+.-+.|+|..|.|||+.++.+.. ++++.... .++|+.-...++.+++..|+.+++
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 9999999999988753 22333488999999999999999998 55544322 678888888899999999999997
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCC
Q 042081 185 PPSRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYC 221 (422)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~ 221 (422)
.... .+....+....+.+.+. ++.++||||++.
T Consensus 99 ~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid 133 (366)
T COG1474 99 KVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVD 133 (366)
T ss_pred CCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 3322 24667777788888776 479999999986
No 23
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00012 Score=70.39 Aligned_cols=122 Identities=12% Similarity=0.212 Sum_probs=77.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC----CCccCCcceeEEEEe-CCCCCHHHHHHHHHHHh
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN----NHVKFYFDCHAWVRV-SIAYNFRMILDDIIKSV 183 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~~~~~il~~l 183 (422)
|-+..++.|.+++..+. -...+.++|+.|+||||+|+.++.. .....|.|...|... +......+ .+++.+.+
T Consensus 8 g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~ 85 (313)
T PRK05564 8 GHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEV 85 (313)
T ss_pred CcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHH
Confidence 77788888888887653 3567789999999999999988872 112345565555442 22222222 22222222
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChh
Q 042081 184 MPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPD 252 (422)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 252 (422)
.... ..+++-++|+|++..-+...++.++..+.....++.+|++|.+.+
T Consensus 86 ~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 86 NKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred hcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 2110 123444566666544478889999999987777899998887654
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.94 E-value=7.9e-05 Score=72.33 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|++..++.|..++..+. .+.+.++|..|+||||+|+.+.+
T Consensus 19 g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 19 GQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred CCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 99999999988887643 45678999999999999999887
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.91 E-value=5.5e-05 Score=75.60 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=61.7
Q ss_pred hhhhhHHH---HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 109 EFESGREE---LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 109 Gr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
|.+..+.. |..++.... ...+.++|++|+||||||+.+++. ....| +.++....-..-++.++
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii----- 81 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVI----- 81 (413)
T ss_pred CcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHH-----
Confidence 77766555 667665543 557788999999999999999983 33333 33322211111111222
Q ss_pred CCCCCccCCCCHHHHHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEE
Q 042081 186 PSRVSVVIGEDYQLKKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLM 246 (422)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 246 (422)
...... ..+++.+|++|+++.-.....+.+...+.. |..++|
T Consensus 82 ----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 82 ----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred ----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 222111 245788999999985555566666665542 455555
No 26
>PRK06893 DNA replication initiation factor; Validated
Probab=97.88 E-value=1.9e-05 Score=72.30 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV 166 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 166 (422)
.+.+.|+|.+|+|||+|++.+++. .........|+++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeH
Confidence 456889999999999999999983 3222334556654
No 27
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.87 E-value=3.5e-05 Score=70.26 Aligned_cols=41 Identities=12% Similarity=-0.012 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+.+..++.+.+++... ....+.|+|..|+|||+||+.+++.
T Consensus 21 ~~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 21 GNAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CcHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4556677777776532 3678889999999999999999873
No 28
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.85 E-value=0.00012 Score=69.81 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=76.8
Q ss_pred hhhhhHHHHHHHHhcCCC-CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQP-QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
+|+.++..+...+...+. -++.|-|.|..|.|||.+.+++++.. ..+ .+|++.-..++...++..|+.+.....
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~~---~vw~n~~ecft~~~lle~IL~~~~~~d 84 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NLE---NVWLNCVECFTYAILLEKILNKSQLAD 84 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CCc---ceeeehHHhccHHHHHHHHHHHhccCC
Confidence 999999999998887654 45667899999999999999999954 222 579999999999999999999996222
Q ss_pred CCCccCC---CCHHHHHHHHHH--hcC--CceEEEEEeCCC
Q 042081 188 RVSVVIG---EDYQLKKSILRD--YLT--NKKYFIVLDDYC 221 (422)
Q Consensus 188 ~~~~~~~---~~~~~~~~~l~~--~L~--~kr~LlVLDdv~ 221 (422)
....... .+..+....+.+ ... ++.++|||||+.
T Consensus 85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad 125 (438)
T KOG2543|consen 85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD 125 (438)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH
Confidence 2100000 122222223333 111 468999999986
No 29
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.84 E-value=7.7e-05 Score=77.97 Aligned_cols=141 Identities=17% Similarity=0.168 Sum_probs=85.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc---ceeEEEEeCCC---CCHHHHHHHH---
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCHAWVRVSIA---YNFRMILDDI--- 179 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~~~~~i--- 179 (422)
|++..+..+.+.+... ....+.|+|.+|+||||||+.+++.......+ ...-|+.+... .+...+...+
T Consensus 158 Gqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~ 235 (615)
T TIGR02903 158 GQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGS 235 (615)
T ss_pred eCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCC
Confidence 9998888888887543 35679999999999999999998754333333 12345555421 1222221111
Q ss_pred ------------HHHhCCCCCC-C-----------ccC-CCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhh
Q 042081 180 ------------IKSVMPPSRV-S-----------VVI-GEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEV 234 (422)
Q Consensus 180 ------------l~~l~~~~~~-~-----------~~~-~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~ 234 (422)
+...+..... . ..+ ..=....+..+...+.+++++++.|+.|..+...|+.+...
T Consensus 236 ~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~ 315 (615)
T TIGR02903 236 VHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKL 315 (615)
T ss_pred ccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhh
Confidence 1111111000 0 000 01123467888999999999999888876566778888777
Q ss_pred cCCCCCCcEEEE--eecCh
Q 042081 235 LPENQNGSRVLM--TVTDP 251 (422)
Q Consensus 235 l~~~~~gs~ilv--TTR~~ 251 (422)
+..+.+...|++ ||++.
T Consensus 316 ~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 316 FEEGAPADFVLIGATTRDP 334 (615)
T ss_pred cccCccceEEEEEeccccc
Confidence 766555555555 56643
No 30
>PRK08116 hypothetical protein; Validated
Probab=97.83 E-value=0.00014 Score=68.14 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhc
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYL 208 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 208 (422)
.-+.++|..|+|||.||..+++ .+...-..+++++ ..+++..+......... .+..+ +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~----~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK------EDENE----IIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc------ccHHH----HHHHh
Confidence 3578999999999999999999 4433323355554 44555555544432211 22222 23334
Q ss_pred CCceEEEEEeCCCCCChhHHHH--HHhhcCC-CCCCcEEEEeecCh
Q 042081 209 TNKKYFIVLDDYCEESDDVLDD--LEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 209 ~~kr~LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
.+-. ||||||+-.+...+|.. +...+.. -.+|..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4333 89999995334444533 3322221 12456799999763
No 31
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.78 E-value=0.0002 Score=59.09 Aligned_cols=87 Identities=11% Similarity=-0.019 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
...+.|+|.+|+||||+++.+... ........+.+..+........... ......... ..........+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~ 73 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKA-----SGSGELRLRLALAL 73 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCC-----CCCHHHHHHHHHHH
Confidence 357899999999999999999983 3333223455544433222211111 001111111 12223333344444
Q ss_pred cCCc-eEEEEEeCCCC
Q 042081 208 LTNK-KYFIVLDDYCE 222 (422)
Q Consensus 208 L~~k-r~LlVLDdv~~ 222 (422)
.... ..+|++|++..
T Consensus 74 ~~~~~~~viiiDei~~ 89 (148)
T smart00382 74 ARKLKPDVLILDEITS 89 (148)
T ss_pred HHhcCCCEEEEECCcc
Confidence 4443 48999999984
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00047 Score=67.71 Aligned_cols=134 Identities=14% Similarity=0.071 Sum_probs=70.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+...-....... ..+...-....++.........
T Consensus 20 Gq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 20 GQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred ChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCCCceE
Confidence 99999999888887653 356678999999999999999987321111100 0000000111111111000000
Q ss_pred C-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 V-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
. ........++....+... ..+++-++|+|++..-+...++.+...+.......++|++|.+
T Consensus 92 ~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 92 EIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred EecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 0 000001222222222111 1245569999999755556677787777655556677777654
No 33
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.76 E-value=4.1e-05 Score=73.74 Aligned_cols=257 Identities=13% Similarity=0.060 Sum_probs=149.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHA-WVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
..+.+.++|.|||||||++-.+.. +...|.... ++...+-.+...+.-.+...++.... .-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 478999999999999999998877 566786544 44444444555555555555655432 2233455677
Q ss_pred HhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcccCCCC---------Ccc----------
Q 042081 206 DYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDLENGQ---------TIH---------- 266 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~~~~~---------~~~---------- 266 (422)
..+.++|.|+|+||..+ =.+.-..+.-.+..++..-.|+.|+|.......-...... ..+
T Consensus 83 ~~~~~rr~llvldnceh-l~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 83 RRIGDRRALLVLDNCEH-LLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HHHhhhhHHHHhcCcHH-HHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 88889999999999741 0111122333344455566778888875433221111000 010
Q ss_pred ---------------------c-hHHHhhhhccCCChHHHHHHHHHhcccc---ccc--ccchhhhhhhhhHhhhhcCCc
Q 042081 267 ---------------------P-DSVLVGGPLIRLKHEAWQFFILHYGKTT---LRI--YMGEKAFLTAWSTIYSVLELP 319 (422)
Q Consensus 267 ---------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~~~---~~~--~~~~~i~~~~~~l~~sy~~Lp 319 (422)
| +|...++..+.-...+-...++.-...+ ... ...... ... +.+||.-|.
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl-~as--l~ws~~lLt 238 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTL-RAS--LDWSYALLT 238 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhc-cch--hhhhhHhhh
Confidence 5 6655555554443331111111110000 100 111234 566 999999999
Q ss_pred hhhHHHHHHhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCceeeEEcCHHHHHHHH
Q 042081 320 VHLKICCLYLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLNELIDRGFIQVKKRRAGGTIKACYVPTFAYVALL 399 (422)
Q Consensus 320 ~~~k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~r~ll~~~~~~~~g~~~~~~~Hdlv~~~a~ 399 (422)
...+--|.-++.|...+... ...|.+-|-....+....-..+..|++.+++...+.. |. ..|+.-+-+|.|+.
T Consensus 239 gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~--~~-a~~Rl~eT~r~Yal 311 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLL--GR-ARYRLLETGRRYAL 311 (414)
T ss_pred hHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhh--hH-HHHHHHHHHHHHHH
Confidence 99999999999998877644 3456665544311234455567788888888765432 11 35777777777777
Q ss_pred Hhchh
Q 042081 400 LPAAL 404 (422)
Q Consensus 400 ~~~~~ 404 (422)
.+-.+
T Consensus 312 aeL~r 316 (414)
T COG3903 312 AELHR 316 (414)
T ss_pred HHHHh
Confidence 66443
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0017 Score=67.13 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=74.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+. +.. .-++.. ..++.-...+.|...-...--
T Consensus 19 GQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~--LnC----~~~~~~-~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 19 GQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC--LNC----ETGVTS-TPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCC----CcCCCC-CCCccCHHHHHHhcCCCCceE
Confidence 99999999999988654 3567889999999999999998873 211 001110 011111111111110000000
Q ss_pred C-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 189 V-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
. ........+++...+... ..++.-++|+|++..-+....+.|...+-....+.++|++|.+.
T Consensus 91 EIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 91 EIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred EecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 0 000002233333322221 23566789999997656677778887776555567788877653
No 35
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.73 E-value=0.00031 Score=67.63 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=67.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+...+.+..++..+. ...++.++|.+|+||||+|+.+++. .... ...++.+. .. ...+++.+..+....
T Consensus 25 ~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~~~~~~- 95 (316)
T PHA02544 25 LPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTRFASTV- 95 (316)
T ss_pred CcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHHHHHhh-
Confidence 99999999999987643 4578888999999999999999883 2221 22333332 11 111111111110000
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.+.+.+-+||+|++..- ..+....+...+.....++++|+||...
T Consensus 96 ------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 96 ------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred ------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 01134557899999643 2233344444344444577888888653
No 36
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00042 Score=70.96 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=70.5
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-------------------CcceeEEEEeCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-------------------YFDCHAWVRVSIA 169 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs~~ 169 (422)
|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.-.-.. .|...+++.....
T Consensus 20 Gq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~ 98 (546)
T PRK14957 20 GQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR 98 (546)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc
Confidence 99999999998887653 345678899999999999999986211000 1111111111111
Q ss_pred CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee
Q 042081 170 YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 170 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 248 (422)
..+ .+..++...+... ..+++-++|+|++..-+...++.|+..+-.....+.+|++|
T Consensus 99 ~gv----------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 99 TGV----------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCH----------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 111 1222233332221 23566799999997556677888888776555566666555
Q ss_pred cC
Q 042081 249 TD 250 (422)
Q Consensus 249 R~ 250 (422)
-+
T Consensus 157 td 158 (546)
T PRK14957 157 TD 158 (546)
T ss_pred CC
Confidence 33
No 37
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=0.0002 Score=70.82 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=72.5
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
+.+...+.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||++++.++..+++..+. ....
T Consensus 179 i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r----P~~v 250 (459)
T PRK11331 179 IPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR----PNGV 250 (459)
T ss_pred CCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----CCCC
Confidence 778888899988875 34677899999999999999998544445677888999999888666554221 1100
Q ss_pred CCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCCChhH-HHHHHhhc
Q 042081 189 VSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEESDDV-LDDLEEVL 235 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~-~~~l~~~l 235 (422)
.- .....-..+.+..... +++++||+|++..-+.+. +..+...+
T Consensus 251 gy---~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 251 GF---RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred Ce---EecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 00 0001111222222222 468999999996323222 44444444
No 38
>PRK04195 replication factor C large subunit; Provisional
Probab=97.69 E-value=0.00033 Score=71.46 Aligned_cols=116 Identities=13% Similarity=0.189 Sum_probs=68.5
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|.++.++.|.+|+..- +...+.+.|+|++|+||||+|+.+++. .. |+. +-++.+...+ ...+..++......
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~~-ielnasd~r~-~~~i~~~i~~~~~~ 91 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WEV-IELNASDQRT-ADVIERVAGEAATS 91 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CCE-EEEccccccc-HHHHHHHHHHhhcc
Confidence 9999999999998752 223678999999999999999999984 31 222 2233333222 22333333322211
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCCh----hHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESD----DVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
.. ....++-+||+|++..-.. ..+..+...+.. .+..||+|+.+
T Consensus 92 ~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 92 GS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred Cc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 11 0113677999999974221 345566555542 23456666644
No 39
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00057 Score=71.46 Aligned_cols=135 Identities=12% Similarity=0.075 Sum_probs=74.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.-...++ +..+..-.....|...-.....
T Consensus 20 GQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 20 GQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCCceEE
Confidence 99999999999887653 345667999999999999998877321111110 0111111111111110000000
Q ss_pred C-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 189 V-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
. ........+++...+... ..++.-++|||++..-+...++.|+..+-.-....++|+||.+.
T Consensus 92 EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 92 EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 0 000012233333333322 12455688999998666777888888775545577888887764
No 40
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.68 E-value=0.00084 Score=64.56 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=67.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe--CCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV--SIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~il~~l~~~ 186 (422)
|+++.++.+..++.... .+.+.++|..|+||||+|+.+.+.-. ...+. ..++.+ +..... ....+.+..+...
T Consensus 21 g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~-~~~~~~i~~~~~~ 95 (319)
T PRK00440 21 GQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGI-DVIRNKIKEFART 95 (319)
T ss_pred CcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccch-HHHHHHHHHHHhc
Confidence 99999999999887643 44579999999999999999987311 11121 112222 111111 1111111111110
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
.. .-...+-+|++|++..-..+....+...+......+.+|+++..
T Consensus 96 ~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 96 AP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 00 00123558999998644455556676666544445677777643
No 41
>PLN03025 replication factor C subunit; Provisional
Probab=97.65 E-value=0.00052 Score=66.15 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=65.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCc-cCCcce-eEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFDC-HAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|.++.++.|..++..+. .+-+.++|++|+||||+|..+++. . ...|.. .+-++.+..... +.++++++.+...
T Consensus 17 g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~~~~ 91 (319)
T PLN03025 17 GNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHE--LLGPNYKEAVLELNASDDRGI-DVVRNKIKMFAQK 91 (319)
T ss_pred CcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HhcccCccceeeecccccccH-HHHHHHHHHHHhc
Confidence 87777888877766543 445679999999999999999873 2 112221 111122221111 1222222221110
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
... .-.++.-+++||++..-.....+.+...+-.-...+++|+++..
T Consensus 92 ~~~-----------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 92 KVT-----------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred ccc-----------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 000 00245669999999755555555665555433445677776654
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00072 Score=68.94 Aligned_cols=134 Identities=15% Similarity=0.009 Sum_probs=72.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.-...+.+...+|.|.+... +.......+..+....
T Consensus 18 Gq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~~- 94 (504)
T PRK14963 18 GQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDAAS- 94 (504)
T ss_pred ChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecccc-
Confidence 88888888888887653 34567899999999999999998742212222222333221100 0000000000000000
Q ss_pred CCccCCCCHHH---HHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 VSVVIGEDYQL---KKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~~~~~~~~~~~---~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
....+. +...+... ..+++-++|+|+++..+...++.+...+......+.+|++|..
T Consensus 95 -----~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 95 -----NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred -----cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 112222 22222211 2346679999999866677788888887654445555555543
No 43
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.61 E-value=0.0013 Score=58.17 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=30.0
Q ss_pred CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 210 NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 210 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
+.+-++|+|++..-..+.++.+...+......+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 456689999987556667788888876555566777777653
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.60 E-value=0.00015 Score=71.36 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHHHhcC--C---------CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc
Q 042081 109 EFESGREELFDLLIEG--Q---------PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 158 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 158 (422)
|+++.+++|.+.+... . ...+-+.++|++|+|||+||+.+++ .....|
T Consensus 126 Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 126 GLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 9999999999887431 0 1245688999999999999999998 444443
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00032 Score=67.37 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=59.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCC
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGED 196 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 196 (422)
|..++..+ .+.-.-.||++|+||||||+.+.. .....| ..+|...+-.+ +
T Consensus 39 lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvk---------------------d 88 (436)
T COG2256 39 LRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVK---------------------D 88 (436)
T ss_pred HHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHH---------------------H
Confidence 33444443 366677899999999999999998 454454 22333222111 2
Q ss_pred HHHHHHHH-HHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEE--eecCh
Q 042081 197 YQLKKSIL-RDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLM--TVTDP 251 (422)
Q Consensus 197 ~~~~~~~l-~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~ 251 (422)
..++.+.- +....|++.+|.+|.|..-+..+-+-| ||.-.+|.-|+| ||.++
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENP 143 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENP 143 (436)
T ss_pred HHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCC
Confidence 22222222 222348999999999963344443444 444456777776 56655
No 46
>PRK12377 putative replication protein; Provisional
Probab=97.58 E-value=0.00047 Score=63.58 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
...+.++|..|+|||+||..+.+ .+......++++++ .+++..+-...... ..... +.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~--------~~~~~----~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNG--------QSGEK----FLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhcc--------chHHH----HHHH
Confidence 46788999999999999999999 44333333566643 34444443332111 11122 2222
Q ss_pred cCCceEEEEEeCCCCCChhHHH--HHHhhcCC-CCCCcEEEEeecCh
Q 042081 208 LTNKKYFIVLDDYCEESDDVLD--DLEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
+ .+.-||||||+-.+....|. .+...+.. -.+.-.+||||...
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 2 34569999999533333343 33333321 11233478887653
No 47
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00076 Score=71.84 Aligned_cols=133 Identities=13% Similarity=0.057 Sum_probs=71.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhC----
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVM---- 184 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~---- 184 (422)
|-+..+..|.+++..+. -...+.++|..|+||||+|+.+++. +...-. +... .+..-.....|.....
T Consensus 20 GQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~----~~~~-pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 20 GQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG--LNCEQG----VTAT-PCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh--ccCccC----CCCC-CCCCchHHHHHhcCCCceEE
Confidence 88898988888887653 3455689999999999999999873 221100 0000 0000000001110000
Q ss_pred -CCCCCCccCCCCHHHHHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 185 -PPSRVSVVIGEDYQLKKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
...... ....+..++...+... ..+++-++|+|++..-+....+.|+..+-.-....++|++|.+
T Consensus 92 EidAas~-~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 92 EVDAASR-TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred Eeccccc-cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 000000 0001222223222211 2367779999999766777888888777554445666666544
No 48
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.58 E-value=0.00051 Score=63.19 Aligned_cols=123 Identities=9% Similarity=0.081 Sum_probs=66.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
+....+..+.+.......+...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-.... . .
T Consensus 80 ~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~-~-~ 149 (244)
T PRK07952 80 GQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFS-N-S 149 (244)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHh-h-c
Confidence 4444555666655443333457889999999999999999984 332223345553 3445544443332 1 0
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHH--HHhhcCC-CCCCcEEEEeecCh
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDD--LEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
..+.+.+ .+.+. +.=|||+||+-.+....|.. +...+.. -.+...+||||...
T Consensus 150 -----~~~~~~~----l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 150 -----ETSEEQL----LNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred -----cccHHHH----HHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 0222222 23344 34488899997555555553 2222211 11234577887753
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=9.1e-05 Score=61.10 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.|+|.+|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999994
No 50
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=4.2e-05 Score=66.40 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc-CCcceeEE
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVK-FYFDCHAW 163 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 163 (422)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854443 35676665
No 51
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0012 Score=68.09 Aligned_cols=139 Identities=9% Similarity=0.024 Sum_probs=73.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.---...-.... + .+..+..-.....|...-....-
T Consensus 20 GQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~aG~hpDvi 96 (700)
T PRK12323 20 GQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEIDAGRFVDYI 96 (700)
T ss_pred CcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHHcCCCCcce
Confidence 99999999999887654 345678899999999999999876311100000000 0 00011111111111100000000
Q ss_pred C-CccCCCCHHHHHHHHHHhc----CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 V-SVVIGEDYQLKKSILRDYL----TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
. ........+++.+.+.... .++.-++|+|++..-+...++.|+..|-.-...+++|++|.+
T Consensus 97 EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 97 EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 0 0000123344444333322 356679999999866777888888877654445666555544
No 52
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.001 Score=69.21 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=70.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC-
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS- 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~- 187 (422)
|.+..+..|.+++..+. -...+.++|..|+||||+|+.+...--...... ...+........|...-....
T Consensus 20 GQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-------~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 20 GQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-------GEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-------CCCCcccHHHHHHhccCccceE
Confidence 99999999999988653 345788999999999999998877311111000 000000000000000000000
Q ss_pred CCCccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 188 RVSVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
..........+++...+... ..+++-++|+|++..-+....+.|+..+-.-...+++|++|.+
T Consensus 92 EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd 158 (709)
T PRK08691 92 EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (709)
T ss_pred EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 00000012233333332211 2356678999999755555666777776543345677777754
No 53
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.0012 Score=60.26 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=73.9
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----Cc
Q 042081 121 LIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-----SV 191 (422)
Q Consensus 121 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~ 191 (422)
|..+-+.-.++.|+|.+|+|||+||.++........ .=..++|++....++...+. .+.......... ..
T Consensus 12 l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~ 90 (226)
T cd01393 12 LGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYV 90 (226)
T ss_pred hCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEE
Confidence 333434567999999999999999999876321111 00357888887777765443 334433322110 01
Q ss_pred cCCCCHHHHHHHHHHhcC----CceEEEEEeCCCCC------Ch-------hHHHHHHhhcC--CCCCCcEEEEeecChh
Q 042081 192 VIGEDYQLKKSILRDYLT----NKKYFIVLDDYCEE------SD-------DVLDDLEEVLP--ENQNGSRVLMTVTDPD 252 (422)
Q Consensus 192 ~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~~~------~~-------~~~~~l~~~l~--~~~~gs~ilvTTR~~~ 252 (422)
....+.+++...+...+. .+.-|||+|.+..- .. .....+...|. ....++.||+|+....
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~ 170 (226)
T cd01393 91 ARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRA 170 (226)
T ss_pred EeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEee
Confidence 112456666666666553 35569999998520 11 11222222222 1246888999986543
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.52 E-value=0.00039 Score=65.84 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRD 206 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 206 (422)
.+.-+.+||++|.||||||+.+.+..+-.. ..+|..|..-.-..=.++|+++.... .
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-------------------~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-------------------K 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH-------------------H
Confidence 477788999999999999999998544433 45777775544333344444432211 2
Q ss_pred hcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEE--eecCh
Q 042081 207 YLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLM--TVTDP 251 (422)
Q Consensus 207 ~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~ 251 (422)
.+.++|..|.+|.|..-+..+-+ ..||.-.+|+-++| ||.+.
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCC
Confidence 24568889999988522222222 23555555665554 56554
No 55
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.0014 Score=60.12 Aligned_cols=130 Identities=9% Similarity=0.100 Sum_probs=74.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEE--e--CCC--C---CHHH----H
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVR--V--SIA--Y---NFRM----I 175 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~--v--s~~--~---~~~~----~ 175 (422)
++......++.+|.+ ..++.+.|..|.|||+||..+..+.-..+.|+..+-+. + ++. | +..+ .
T Consensus 59 p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 59 ARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred CCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 777888888888865 34999999999999999998877422234455433331 1 110 1 1111 1
Q ss_pred HHHHHHHhCCCCCCCccCCCCHHHHHHHH-----------HHhcCCce---EEEEEeCCCCCChhHHHHHHhhcCCCCCC
Q 042081 176 LDDIIKSVMPPSRVSVVIGEDYQLKKSIL-----------RDYLTNKK---YFIVLDDYCEESDDVLDDLEEVLPENQNG 241 (422)
Q Consensus 176 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l-----------~~~L~~kr---~LlVLDdv~~~~~~~~~~l~~~l~~~~~g 241 (422)
+.-+...|..- .+...+...+ ..+++|+. -+||+|.+.+-+......+...+ +.+
T Consensus 135 ~~pi~D~L~~~--------~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~ 203 (262)
T PRK10536 135 FRPVYDVLVRR--------LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GEN 203 (262)
T ss_pred HHHHHHHHHHH--------hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCC
Confidence 11111111110 0011111111 23556654 49999999877777766666655 458
Q ss_pred cEEEEeecChhH
Q 042081 242 SRVLMTVTDPDF 253 (422)
Q Consensus 242 s~ilvTTR~~~v 253 (422)
|++|+|--..++
T Consensus 204 sk~v~~GD~~Qi 215 (262)
T PRK10536 204 VTVIVNGDITQC 215 (262)
T ss_pred CEEEEeCChhhc
Confidence 999987654443
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.50 E-value=0.00046 Score=73.13 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=59.7
Q ss_pred hhhhhHH---HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 109 EFESGRE---ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 109 Gr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
|.+..+. .+...+..+ ...-+.++|++|+||||||+.+++ ....+|. .++......
T Consensus 32 GQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~-----~lna~~~~i------------ 90 (725)
T PRK13341 32 GQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHFS-----SLNAVLAGV------------ 90 (725)
T ss_pred CcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcce-----eehhhhhhh------------
Confidence 7777664 455555543 355678999999999999999998 4444441 111110000
Q ss_pred CCCCCccCCCCHHHHHHHHHHhc--CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEe
Q 042081 186 PSRVSVVIGEDYQLKKSILRDYL--TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMT 247 (422)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 247 (422)
.+..+........+ .+++.+|+||+++.-+...++.+...+. .|+.++++
T Consensus 91 ---------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~ 142 (725)
T PRK13341 91 ---------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIG 142 (725)
T ss_pred ---------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEE
Confidence 01111122222222 2467799999997445566666665443 35555553
No 57
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0015 Score=66.73 Aligned_cols=134 Identities=12% Similarity=0.039 Sum_probs=71.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+...---...+.. .+++.-.....|...-.....
T Consensus 20 Gq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 20 GQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-------NPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-------ccCCCCHHHHHHhcCCCceEE
Confidence 99999999999997653 2456789999999999999998863111111100 001111111111000000000
Q ss_pred C-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 V-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
. ........+++...+... ..++.-++|+|++..-+.+..+.++..+-.....+++|++|.+
T Consensus 92 eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 92 EVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred EEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 0 000012233333222211 1356668999999765677778888777655556777766644
No 58
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0021 Score=66.03 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=69.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..++.|.+++..+. -...+.++|..|+||||+|+.+...---... +.. .++..-.....+...-.....
T Consensus 20 Gq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~------~~~-~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 20 GQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETG------VTA-TPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC------CCC-CCCCCCHHHHHHhcCCCCcee
Confidence 88888888888887653 2456789999999999999998763111100 000 000000000001000000000
Q ss_pred -CCccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 -VSVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 -~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
.........+++...+... ..+++-++|+|++..-+....+.++..+-.....+.+|++|.+
T Consensus 92 ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 92 EVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred EeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 0000012223333222211 1356679999999755666677787777654446667666644
No 59
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.47 E-value=0.00023 Score=64.94 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV 166 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 166 (422)
.-.++|+|..|+|||||...+.. ...+.|+.+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 44678999999999999999998 57778877777654
No 60
>PRK08727 hypothetical protein; Validated
Probab=97.46 E-value=0.00058 Score=62.66 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV 166 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 166 (422)
...+.|+|..|+|||+|++.+++. ..+......+++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 456999999999999999999873 3333334556653
No 61
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.45 E-value=0.0024 Score=62.43 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus 18 g~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999887653 345788999999999999988875
No 62
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0019 Score=67.20 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=71.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|-+..+..|.+++..+. -...+.++|..|+||||+|+.+.+.---.... .... ...++.-...+.|...-...
T Consensus 20 GQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g~h~D 94 (618)
T PRK14951 20 GQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSGRFVD 94 (618)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcCCCCc
Confidence 88888888888887653 35677899999999999999986521100000 0000 00111111111221000000
Q ss_pred CCC-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 187 SRV-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
.-. ........+++.+.+... ..++.-++|+|++..-+...++.++..+-.-...+++|++|.+
T Consensus 95 ~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 95 YTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred eeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 000 000012333333333221 1245558999999877778888888877654456667666543
No 63
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0028 Score=63.01 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=72.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEE-eCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~il~~l~~~~ 187 (422)
|.+..++.|..++..+. -...+.++|+.|+||||+|..+.+.-.-....+...|.. ...+...-...+.+......+.
T Consensus 20 Gq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~ 98 (397)
T PRK14955 20 AQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNI 98 (397)
T ss_pred ChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCe
Confidence 88888888888887653 345588899999999999999876321111111111110 0111111111111111110000
Q ss_pred CC-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeec
Q 042081 188 RV-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVT 249 (422)
Q Consensus 188 ~~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 249 (422)
.. ........+++.+..... ..+++-++|+|++..-+...++.+...+......+.+|++|.
T Consensus 99 ~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 99 SEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred EeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 00 000012234444322222 124566889999875566678888888765555666666553
No 64
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0026 Score=62.88 Aligned_cols=135 Identities=11% Similarity=0.042 Sum_probs=69.7
Q ss_pred hhhhhHHHHHHHHhcCCC--------CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEGQP--------QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDII 180 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 180 (422)
|-+..++.|.+++..+.. -..-+.++|+.|+|||++|..+... +...... ..+...-..-+.+.
T Consensus 9 Gq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~------~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 9 GQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD------EPGCGECRACRTVL 80 (394)
T ss_pred ChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC------CCCCCCCHHHHHHh
Confidence 888888888888876431 2566889999999999999998762 1110000 00000001111111
Q ss_pred HHhCCCCCCCcc--CCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 181 KSVMPPSRVSVV--IGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 181 ~~l~~~~~~~~~--~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.........-.| .....+++...+... ..+++-++|+|++..-+....+.+...+-....+..+|++|.+.
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 000000000000 012233333222211 12455588889997556666677777765545567677776663
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0024 Score=64.64 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+.....|...+..+. -...+.++|++|+||||+|+.+.+.
T Consensus 18 Gq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 18 GQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 88888787777776553 2456789999999999999999873
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0034 Score=63.94 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=74.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce-eEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
|-+..+..|...+..+. -...+.++|..|+||||+|+.+++.---...... --+. .+..-.....+........
T Consensus 25 Gq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 25 GQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred CcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcCCCCcE
Confidence 88888888887776543 3467889999999999999999873211111000 0000 0000001111110000000
Q ss_pred CC-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEE-eecChhHhh
Q 042081 188 RV-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLM-TVTDPDFLS 255 (422)
Q Consensus 188 ~~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~va~ 255 (422)
.. ........+++...+... +.+++-++|+|+++.-+...++.+...+......+.+|+ ||+...+..
T Consensus 100 ~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 100 IEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred EEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 00 000012333333333222 235677899999986667788888888775555566654 444444433
No 67
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.00061 Score=63.63 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhc
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYL 208 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 208 (422)
.-+.++|.+|+|||.||..+.+ ........+++++ ..+++..+..... ..+.......+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~---------~~~~~~~l~~l---- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARR---------ELQLESAIAKL---- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHh---------CCcHHHHHHHH----
Confidence 3588999999999999999987 3322222345553 3445555533211 02222222222
Q ss_pred CCceEEEEEeCCCCCChhHH--HHHHhhcCCCCCCcEEEEeecCh
Q 042081 209 TNKKYFIVLDDYCEESDDVL--DDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 209 ~~kr~LlVLDdv~~~~~~~~--~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
. +.-||||||+-......| ..+...+.....+..+||||...
T Consensus 166 ~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 D-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred h-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2 344999999953322222 22333232111123588888864
No 68
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.33 E-value=0.0028 Score=59.40 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=72.5
Q ss_pred hhHHHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHcCCCcc-----CCcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 112 SGREELFDLLIEG-QPQLSVVAILDSSGFDKTAFAADTYNNNHVK-----FYFDCHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 112 ~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
+.++.|.++|... ....+-+.|||.+|+|||++++++....-.. ..+ .++.|.....++...+...|+..++.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhCc
Confidence 3345555555443 2345678999999999999999998642111 111 35667777889999999999999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 042081 186 PSRVSVVIGEDYQLKKSILRDYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 221 (422)
+... ..+...+.......|+. +--+||+|.+.
T Consensus 123 P~~~----~~~~~~~~~~~~~llr~~~vrmLIIDE~H 155 (302)
T PF05621_consen 123 PYRP----RDRVAKLEQQVLRLLRRLGVRMLIIDEFH 155 (302)
T ss_pred ccCC----CCCHHHHHHHHHHHHHHcCCcEEEeechH
Confidence 8754 24555556665566654 44588999986
No 69
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.33 E-value=0.00073 Score=62.10 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=31.9
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeC
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVS 167 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 167 (422)
....+.++.... ....+.|+|+.|+|||+|++.+++. ....-..+.++++.
T Consensus 32 a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 32 LLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred HHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 344444443332 3457899999999999999999873 32222234555543
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0031 Score=62.02 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.+.+.+..+. -...+.++|+.|+||||+|..+.+
T Consensus 21 g~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 21 GQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999887653 356888999999999999999977
No 71
>PRK09087 hypothetical protein; Validated
Probab=97.31 E-value=0.00072 Score=61.68 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.+.+.|+|..|+|||+|++.++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998874
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0034 Score=63.50 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=68.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC------Cc------------c-CCcceeEEEEeCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNN------HV------------K-FYFDCHAWVRVSIA 169 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~------~~------------~-~~F~~~~wv~vs~~ 169 (422)
|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+...- .. . ..+...+.+..+..
T Consensus 17 GQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~ 95 (491)
T PRK14964 17 GQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN 95 (491)
T ss_pred CcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC
Confidence 88888888777776553 24478899999999999999887510 00 0 00111222222211
Q ss_pred CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEE
Q 042081 170 YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVL 245 (422)
Q Consensus 170 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~il 245 (422)
. ..+++...+... ..++.-++|+|++..-+....+.+...+-.-...+++|
T Consensus 96 ~-------------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 96 T-------------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred C-------------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 1 222222222111 12456689999997556677788888776555567676
Q ss_pred Eeec
Q 042081 246 MTVT 249 (422)
Q Consensus 246 vTTR 249 (422)
++|.
T Consensus 151 latt 154 (491)
T PRK14964 151 LATT 154 (491)
T ss_pred EEeC
Confidence 6653
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.0021 Score=67.09 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=72.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+. +.... ... +.++..-...+.|...-.....
T Consensus 20 GQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~----~~~-~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 20 GQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKG--LNCET----GIT-ATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--hhhcc----CCC-CCCCCCCHHHHHHHcCCCCCce
Confidence 98888888888887653 3455789999999999999999873 21110 000 0111111122222110000000
Q ss_pred C-CccCCCCHHHHH---HHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 V-SVVIGEDYQLKK---SILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~-~~~~~~~~~~~~---~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
. ........+++. ..+... ..+++-++|+|++..-+....+.|+..+-.-....++|++|.+
T Consensus 92 eidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 92 EIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred eecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 0 000001233333 222211 2456779999999766777788887777654445566665554
No 74
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.29 E-value=0.00095 Score=59.50 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeC----CC--CCHH----------HH
Q 042081 112 SGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVS----IA--YNFR----------MI 175 (422)
Q Consensus 112 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs----~~--~~~~----------~~ 175 (422)
..-...++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.-. +. |-+. .-
T Consensus 7 ~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 7 EEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp HHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred HHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 344455666663 5699999999999999998877653344778777776321 11 1000 11
Q ss_pred HHHHHHHhCCCCCCCccCCCCHHHHHHH------HHHhcCCc---eEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEE
Q 042081 176 LDDIIKSVMPPSRVSVVIGEDYQLKKSI------LRDYLTNK---KYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLM 246 (422)
Q Consensus 176 ~~~il~~l~~~~~~~~~~~~~~~~~~~~------l~~~L~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 246 (422)
+.+.+..+... ...+.+.+. -..+++|+ ...||+|.+.+-.+.++..+...+ +.|||+|+
T Consensus 83 ~~d~l~~~~~~--------~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~ 151 (205)
T PF02562_consen 83 IYDALEELFGK--------EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIII 151 (205)
T ss_dssp HHHHHTTTS-T--------TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEE
T ss_pred HHHHHHHHhCh--------HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEE
Confidence 11222222111 222222211 11334554 569999999877787777776654 56899999
Q ss_pred eecChhHhh
Q 042081 247 TVTDPDFLS 255 (422)
Q Consensus 247 TTR~~~va~ 255 (422)
+=-..++..
T Consensus 152 ~GD~~Q~D~ 160 (205)
T PF02562_consen 152 TGDPSQIDL 160 (205)
T ss_dssp EE-------
T ss_pred ecCceeecC
Confidence 866554433
No 75
>PRK07261 topology modulation protein; Provisional
Probab=97.28 E-value=0.00074 Score=58.84 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=41.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc-CCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhc
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYL 208 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 208 (422)
.|.|+|++|+||||||+.+.....+. -+.|...|-... . ..+.++....+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~--------------------~-----~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW--------------------Q-----ERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc--------------------c-----cCCHHHHHHHHHHHH
Confidence 48899999999999999998642221 123444442110 0 134456667777777
Q ss_pred CCceEEEEEeCCC
Q 042081 209 TNKKYFIVLDDYC 221 (422)
Q Consensus 209 ~~kr~LlVLDdv~ 221 (422)
.+.+ .|+|+..
T Consensus 57 ~~~~--wIidg~~ 67 (171)
T PRK07261 57 LKHD--WIIDGNY 67 (171)
T ss_pred hCCC--EEEcCcc
Confidence 7666 6888875
No 76
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.056 Score=56.71 Aligned_cols=113 Identities=10% Similarity=0.072 Sum_probs=68.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCc---------------------cCCcceeEEEEeC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHV---------------------KFYFDCHAWVRVS 167 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~~~F~~~~wv~vs 167 (422)
|.+..++.|..++..+. -...+.++|..|+||||+|+.+...--- ..+|+. ..+..+
T Consensus 21 Gq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~~ 98 (614)
T PRK14971 21 GQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDAA 98 (614)
T ss_pred CcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEeccc
Confidence 99999999999987653 3456889999999999999887762110 012221 111111
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcE
Q 042081 168 IAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSR 243 (422)
Q Consensus 168 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ 243 (422)
.. ...+++...+.+. ..+++-++|+|++..-+...++.|...+..-...+.
T Consensus 99 ~~-------------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 99 SN-------------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred cc-------------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 11 1223333332211 123455889999876567778888888765555666
Q ss_pred EEEee
Q 042081 244 VLMTV 248 (422)
Q Consensus 244 ilvTT 248 (422)
+|++|
T Consensus 154 fIL~t 158 (614)
T PRK14971 154 FILAT 158 (614)
T ss_pred EEEEe
Confidence 66555
No 77
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.27 E-value=0.0011 Score=65.57 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG-----------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|+++.+++|.+.+... -..++-|.++|++|+|||++|+.+++
T Consensus 135 Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 135 GLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 9999999998876421 12356688999999999999999998
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.27 E-value=0.00086 Score=61.25 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=28.4
Q ss_pred hhhhhH-HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGR-EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.++.. ..+.++.. .......+.|+|..|+|||+||+.+++.
T Consensus 23 ~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 23 GENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 443333 33444333 2233567889999999999999999883
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0034 Score=64.65 Aligned_cols=133 Identities=13% Similarity=0.061 Sum_probs=69.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+. +. |.-|.... .++.....+.+.........
T Consensus 20 GQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~~-~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 20 GQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDGD-CCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred CcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCCC-CCcccHHHHHHHcCCCCceE
Confidence 99999999999887653 2457889999999999999998773 21 11122111 11111122222111100000
Q ss_pred C-CccCCCCHHHHHH---HHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeec
Q 042081 189 V-SVVIGEDYQLKKS---ILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVT 249 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~---~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 249 (422)
. ........+++.. .+... ..+++-++|+|++..-+...++.|...+-.....+.+|++|.
T Consensus 92 eIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 92 ELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred EeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 0 0000012222222 22211 123344699999875456777788777754444555655553
No 80
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.23 E-value=0.002 Score=61.46 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=68.6
Q ss_pred hhhhhHHHHHHHHhcCC--CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQ--PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
++........+++..-. ....-+-++|..|+|||.||..+++... +..+. +.++++ ..++.++-.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHhc-
Confidence 55555566666665321 2345788999999999999999998422 22233 445543 3455555443321
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHH--HHhhc-CCC-CCCcEEEEeecC
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDD--LEEVL-PEN-QNGSRVLMTVTD 250 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTTR~ 250 (422)
.+..+ .+.. +. +-=||||||+-.+....|.. +...+ ... ..+-.+|+||-.
T Consensus 206 --------~~~~~---~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 --------GSVKE---KIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------CcHHH---HHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 12222 2222 22 45589999997656666753 44433 211 234568888875
No 81
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.21 E-value=0.0011 Score=59.30 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFR-MILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
.+|.|+|..|+||||++..+.. .+.......+++- ..+.... .-...++.+-. . ..+.......++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------v--g~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIEFVHESKRSLINQRE------V--GLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCccccccCccceeeecc------c--CCCccCHHHHHHHH
Confidence 4789999999999999998776 3333333444432 2211100 00000111000 0 12223456677788
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 208 LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
|....=.|++|.+. +.+.+..+.... ..|..|+.|+...++..
T Consensus 71 Lr~~pd~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 71 LRQDPDVILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred hcCCcCEEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 87777799999997 666665544443 24666888887766543
No 82
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.20 E-value=0.0079 Score=51.84 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=70.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC---Ccc---------------CCcceeEEEEeCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNN---HVK---------------FYFDCHAWVRVSIAY 170 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~---------------~~F~~~~wv~vs~~~ 170 (422)
|-++..+.|.+.+..+. -...+.++|..|+||+++|..+.+.- ... ...+...|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 44556666777666543 35578899999999999998886521 111 111222333222110
Q ss_pred CHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcC-----CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEE
Q 042081 171 NFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLT-----NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVL 245 (422)
Q Consensus 171 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~il 245 (422)
.....+++. .+...+. ++.=.+|+|++..-+.+..+.|+..+-.-...+.+|
T Consensus 80 ----------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 80 ----------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ----------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ----------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 012344444 3333332 345689999998767888888888886666688999
Q ss_pred EeecChh
Q 042081 246 MTVTDPD 252 (422)
Q Consensus 246 vTTR~~~ 252 (422)
++|.+..
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 9988764
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0024 Score=64.06 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=72.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..+..|..++..+. -...+.++|..|+||||+|+.+++. +...-... ........+. ..+.........
T Consensus 22 GQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~-~~pCg~C~sC----~~i~~g~~~dvi 93 (484)
T PRK14956 22 HQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG-NEPCNECTSC----LEITKGISSDVL 93 (484)
T ss_pred ChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC-ccccCCCcHH----HHHHccCCccce
Confidence 88888888888887754 2346789999999999999999873 22110000 0000001111 111111110000
Q ss_pred C-CccCC---CCHHHHHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEe-ecChhH
Q 042081 189 V-SVVIG---EDYQLKKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMT-VTDPDF 253 (422)
Q Consensus 189 ~-~~~~~---~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT-TR~~~v 253 (422)
. ..... .+..++...+... ..++.-++|+|++..-+.+.++.++..+-.......+|++ |....+
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0 00000 1222333333322 2356679999999866777888888777543334554544 443444
No 84
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.17 E-value=0.0027 Score=59.39 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHH
Q 042081 110 FESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMIL 176 (422)
Q Consensus 110 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 176 (422)
..+-++++..++..+ .-|.+.|.+|+|||+||+.+.. ..... ...++.+...+..+++
T Consensus 7 ~~~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 7 VKRVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHh
Confidence 344455566666543 3456899999999999999987 33222 3345555555544443
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0073 Score=62.54 Aligned_cols=138 Identities=10% Similarity=-0.038 Sum_probs=72.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.|.+++..+. -...+.++|..|+||||+|+.+...---....+ ..+++.-...+.|...-....+
T Consensus 17 Gq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 17 GQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccCCCce
Confidence 98888999999887653 345678999999999999999987311101100 0011111111111110000000
Q ss_pred C-Cc--cCCCCHHH---HHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee-cChhHh
Q 042081 189 V-SV--VIGEDYQL---KKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV-TDPDFL 254 (422)
Q Consensus 189 ~-~~--~~~~~~~~---~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~va 254 (422)
- .+ ......++ +...+... ..+++-++|+|++..-+....+.|+..+..-.....+|++| ....+.
T Consensus 89 vieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 89 VVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred EEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0 00 00012233 22222221 13456689999997667778888888776544455555544 444433
No 86
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0085 Score=58.35 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=75.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC----cceeEEEEeCCCCCHHHHHHHHHHH--
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSIAYNFRMILDDIIKS-- 182 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~-- 182 (422)
|-++..+.+...+..+. -...+.|+|..|+||||+|..+... +-.+ +... ....+.......+.+...
T Consensus 27 Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~h 100 (351)
T PRK09112 27 GHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPASPVWRQIAQGAH 100 (351)
T ss_pred CcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCCHHHHHHHcCCC
Confidence 99999999999887654 3557889999999999999988773 2211 1111 011111111122222221
Q ss_pred -----hCCCCCC---CccCCCCHHHHHHHHHHhcC-----CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeec
Q 042081 183 -----VMPPSRV---SVVIGEDYQLKKSILRDYLT-----NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVT 249 (422)
Q Consensus 183 -----l~~~~~~---~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 249 (422)
+..+... ........+++. .+.+++. +++-++|+|++..-+....+.++..+........+|++|.
T Consensus 101 Pdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 101 PNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 1000000 000113345544 3444443 4667999999986667777777777764444555555554
Q ss_pred C
Q 042081 250 D 250 (422)
Q Consensus 250 ~ 250 (422)
.
T Consensus 180 ~ 180 (351)
T PRK09112 180 S 180 (351)
T ss_pred C
Confidence 4
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.14 E-value=0.0016 Score=70.64 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=72.3
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|.+..++.|.+.+... .....++.++|+.|+|||.||+.+... +-......+-+.++.-.+ . .-..
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~-~----~~~~ 642 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE-A----HTVS 642 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh-h----hhhc
Confidence 8899999998888531 223567899999999999999988762 211111112222221100 0 0111
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCC-----------CCcEEEEeecC
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQ-----------NGSRVLMTVTD 250 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 250 (422)
.+.+........ .....+...+++ ....+|+||++...+++.++.|...+..+. ..+-||+||..
T Consensus 643 ~l~g~~~gyvg~-~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 RLKGSPPGYVGY-GEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cccCCCCCcccc-cccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 121111100000 111123333332 345699999998778888888877765442 34566777665
No 88
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.00076 Score=62.60 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..-+.|+|.+|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 446889999999999999999773
No 89
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0027 Score=65.28 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCccCC------Cccc------cccccccCCCCCch--hhhhhHHHHHHHHhc----C
Q 042081 63 GIHSKIIDIRNRLQQLPPGDNGFDFKER------RNEF------THLLIEGQFQLDKS--EFESGREELFDLLIE----G 124 (422)
Q Consensus 63 ~~~~~i~~l~~rl~~i~~~~~~~~~~~~------~~~~------~~~~~~~~~~~~~~--Gr~~~~~~l~~~L~~----~ 124 (422)
.+-+-+.+=..+++.+-.....|++..+ +-++ ..+........+++ |.++-+++|++.+.- +
T Consensus 355 ~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrg 434 (906)
T KOG2004|consen 355 HVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRG 434 (906)
T ss_pred HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcc
Confidence 3344455555677777777777776543 1011 01111122234454 999999999999864 3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHH
Q 042081 125 QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSIL 204 (422)
Q Consensus 125 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 204 (422)
..+-++++.+|++|||||++|+.|+. ...+.| +-++++.-.+..+|- +.... --+.=+..+.+.|
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk--------GHRRT--YVGAMPGkiIq~L 499 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK--------GHRRT--YVGAMPGKIIQCL 499 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc--------cccee--eeccCChHHHHHH
Confidence 44578999999999999999999998 565555 234555555544432 21110 0011122333333
Q ss_pred HHhcCCceEEEEEeCCC
Q 042081 205 RDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 205 ~~~L~~kr~LlVLDdv~ 221 (422)
+.. +-..-|+.+|.|.
T Consensus 500 K~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 500 KKV-KTENPLILIDEVD 515 (906)
T ss_pred Hhh-CCCCceEEeehhh
Confidence 332 3456688899885
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0088 Score=58.58 Aligned_cols=139 Identities=13% Similarity=0.053 Sum_probs=75.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeE------EEEeCCCCCHHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHA------WVRVSIAYNFRMILDDIIKS 182 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------wv~vs~~~~~~~~~~~il~~ 182 (422)
|.+..++.|.+.+..+. -...+.++|+.|+||+|+|..+...---........ -..+.... ...+.|...
T Consensus 23 Gq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~~i~~~ 98 (365)
T PRK07471 23 GHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVARRIAAG 98 (365)
T ss_pred ChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHHHHHcc
Confidence 99999999998888763 355688999999999999987765210000000000 00000000 111111100
Q ss_pred hCCC---------CCC-CccCCCCHHHHHHHHHHhcC-----CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEe
Q 042081 183 VMPP---------SRV-SVVIGEDYQLKKSILRDYLT-----NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMT 247 (422)
Q Consensus 183 l~~~---------~~~-~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 247 (422)
-... ... ........+++. .+.+++. +.+-++|+|++..-+....+.|...+..-..++.+|++
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~ 177 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLV 177 (365)
T ss_pred CCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 0000 000 000112344433 3333433 45678999999766778888888877655556777887
Q ss_pred ecChh
Q 042081 248 VTDPD 252 (422)
Q Consensus 248 TR~~~ 252 (422)
|.+..
T Consensus 178 t~~~~ 182 (365)
T PRK07471 178 SHAPA 182 (365)
T ss_pred ECCch
Confidence 77754
No 91
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0058 Score=65.82 Aligned_cols=138 Identities=10% Similarity=-0.014 Sum_probs=73.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.-.-.+.... ..+..-...+.|...-....+
T Consensus 19 Gqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 19 GQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCCCCCCc
Confidence 88888999999887654 2356789999999999999999773211111100 000100111111100000000
Q ss_pred C-Cc--cCCCCHHHHHHHHHH----hcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeec-ChhHh
Q 042081 189 V-SV--VIGEDYQLKKSILRD----YLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVT-DPDFL 254 (422)
Q Consensus 189 ~-~~--~~~~~~~~~~~~l~~----~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR-~~~va 254 (422)
- .+ ......+++.+.... -..++.-++|||++..-+...++.|+..+-.-...+.+|++|. ...+.
T Consensus 91 v~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 91 VTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred EEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0 00 000223333332111 1235556889999986677888888888875555666665554 33343
No 92
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.11 E-value=0.016 Score=63.13 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG-QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.+++.|...+..- ...-.++.+.|..|||||+|++.|..
T Consensus 4 GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 4 GRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred chHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 8999999999988763 33466999999999999999999987
No 93
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.10 E-value=0.0019 Score=58.12 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=54.9
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--ccCCCC---H
Q 042081 123 EGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS--VVIGED---Y 197 (422)
Q Consensus 123 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~--~~~~~~---~ 197 (422)
.+=+.-+++.|+|.+|+|||+++.++... ....-...+|++... +++..+.+ ++.......... .....+ .
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~ 82 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQ 82 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHH
Confidence 33345789999999999999999998863 323345688998875 66555443 333220000000 000022 2
Q ss_pred HHHHHHHHHhcCC-ceEEEEEeCCC
Q 042081 198 QLKKSILRDYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~~~L~~-kr~LlVLDdv~ 221 (422)
......+...+.. +.-+||+|.+.
T Consensus 83 ~~~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 83 GVAIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHHHhhcCccEEEEeCcH
Confidence 2334555555543 45689999874
No 94
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.10 E-value=0.0024 Score=58.22 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=55.6
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCccCC
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKS----VMPPSRVSVVIG 194 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~----l~~~~~~~~~~~ 194 (422)
++|..+-..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+. ++... +.... .....
T Consensus 14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~--~~~~~ 87 (225)
T PRK09361 14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNI--IIFEP 87 (225)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCe--EEEeC
Confidence 333334345679999999999999999999873 32233457888877 55554432 23322 10000 00001
Q ss_pred CCH---HHHHHHHHHhcCCceEEEEEeCCC
Q 042081 195 EDY---QLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 195 ~~~---~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
.+. .+..+.+...+..+.-+||+|.+.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 88 SSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 222 233344444454667799999973
No 95
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.10 E-value=0.0016 Score=63.03 Aligned_cols=106 Identities=11% Similarity=-0.060 Sum_probs=65.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc-ce-eEEEEeCCC-CCHHHHHHHHHHHhCCCCCC
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-DC-HAWVRVSIA-YNFRMILDDIIKSVMPPSRV 189 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~vs~~-~~~~~~~~~il~~l~~~~~~ 189 (422)
...++++.+..-.. -+-+.|+|..|+|||||++.+.+. +.... +. .+|+.+.+. .++.+++..+...+......
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 44557777775332 345689999999999999998873 32222 33 467777765 46778888888777654322
Q ss_pred CccCC-CCHHHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 190 SVVIG-EDYQLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 190 ~~~~~-~~~~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
..+.. .........+.+++ ++++++||+|++-
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11110 11111122222222 4799999999984
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.10 E-value=0.0017 Score=59.02 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHHHHhc-CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccC
Q 042081 117 LFDLLIE-GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVI 193 (422)
Q Consensus 117 l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~ 193 (422)
....+.. .+.....+-|+|..|+|||.|.+.+++ ...+..+ .++++ +..+....+...+...
T Consensus 22 ~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~------- 86 (219)
T PF00308_consen 22 AAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADALRDG------- 86 (219)
T ss_dssp HHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHHHHcc-------
Confidence 3333433 333456788999999999999999998 4443322 24555 3445555555554331
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHH-hhcC-CCCCCcEEEEeecCh
Q 042081 194 GEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLE-EVLP-ENQNGSRVLMTVTDP 251 (422)
Q Consensus 194 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~-~~l~-~~~~gs~ilvTTR~~ 251 (422)
. ...++..+++ -=+|++||+..- ....|.... ..+. ....|.+||+|++..
T Consensus 87 --~----~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 87 --E----IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp --S----HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred --c----chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 1 2234444443 237899999632 222232222 2111 113467899999763
No 97
>PRK09183 transposase/IS protein; Provisional
Probab=97.09 E-value=0.0015 Score=60.98 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+.|+|.+|+|||+||..+.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34677999999999999999976
No 98
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0016 Score=60.91 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCC-cceeEEEEe
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFY-FDCHAWVRV 166 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 166 (422)
..-+.++|..|+|||+||..+++ .+... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 56788999999999999999998 44333 233556653
No 99
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.0035 Score=57.49 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=57.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CccCC
Q 042081 124 GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-----SVVIG 194 (422)
Q Consensus 124 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~ 194 (422)
+-..-.++.|+|.+|+|||+|+.+++........ -..++|++....++...+ .++++..+..... .....
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEec
Confidence 3345689999999999999999999753222221 256899988887775544 3344443322111 00001
Q ss_pred CCHH---HHHHHHHHhcC-C-ceEEEEEeCCC
Q 042081 195 EDYQ---LKKSILRDYLT-N-KKYFIVLDDYC 221 (422)
Q Consensus 195 ~~~~---~~~~~l~~~L~-~-kr~LlVLDdv~ 221 (422)
.+.+ .....+...+. . +--|||+|.+.
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2223 33344444553 3 67799999985
No 100
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.08 E-value=0.004 Score=61.82 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=62.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLT 209 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 209 (422)
++.|.|+-++||||+++.+.. ...+. .+++......... ....+....+...-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~---------------------~~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDR---------------------IELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcch---------------------hhHHHHHHHHHHhhc
Confidence 999999999999999977766 23222 4555433221100 111111222222222
Q ss_pred CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHh
Q 042081 210 NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 210 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 254 (422)
.++.+|+||.|. ....|......+.+..+. +|++|+-+....
T Consensus 93 ~~~~yifLDEIq--~v~~W~~~lk~l~d~~~~-~v~itgsss~ll 134 (398)
T COG1373 93 REKSYIFLDEIQ--NVPDWERALKYLYDRGNL-DVLITGSSSSLL 134 (398)
T ss_pred cCCceEEEeccc--CchhHHHHHHHHHccccc-eEEEECCchhhh
Confidence 277899999999 889999999998876655 899888876553
No 101
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.08 E-value=0.0043 Score=66.65 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=65.2
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|-+..++.|.+.+... .....++.++|+.|+|||+||+.++. ... ...+.+..+.-.+.. .+..
T Consensus 458 GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~----~~~~ 528 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKH----TVSR 528 (731)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhcc----cHHH
Confidence 7777778887777632 12345788999999999999999988 332 223444443311110 1111
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCc-eEEEEEeCCCCCChhHHHHHHhhcCC
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNK-KYFIVLDDYCEESDDVLDDLEEVLPE 237 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~~l~~~l~~ 237 (422)
.++.+... .. ...... +.+.++.+ ..+|+||++..-+++.++.|...+..
T Consensus 529 lig~~~gy-vg-~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 529 LIGAPPGY-VG-FEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HhcCCCCC-cc-cchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 12221110 00 011122 33333333 45999999987788888888877654
No 102
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0094 Score=62.29 Aligned_cols=135 Identities=13% Similarity=0.033 Sum_probs=72.5
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..++.|..++..+. -...+.++|..|+||||+|+.+... +.... +-.....++.....+.|........-
T Consensus 20 Gq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~~~~~~d~~ 92 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIAEGSAVDVI 92 (585)
T ss_pred CCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHhcCCCCeEE
Confidence 98888998888887653 3456789999999999999999873 21100 00000111222233333322111100
Q ss_pred C-CccCCCCHHHHHHHH---HHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 V-SVVIGEDYQLKKSIL---RDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l---~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
. ........+++...+ ... ..+++-++|+|++..-+.+..+.|...+-.....+.+|++|.+
T Consensus 93 ~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 93 EMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred EEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0 000012233332222 211 1245678999998654566677787777654445666666543
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.08 E-value=0.0052 Score=67.10 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=73.3
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|.+..++.|...+... .....++.++|+.|+|||++|+.+... ....-...+.+..+.-.+.. . ..
T Consensus 569 GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~-~----~~ 641 (852)
T TIGR03346 569 GQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKH-S----VA 641 (852)
T ss_pred CChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccc-h----HH
Confidence 8888899998888752 112467889999999999999999872 21111122333333221111 1 11
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCC-----------CCcEEEEeecC
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQ-----------NGSRVLMTVTD 250 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 250 (422)
.+.+....... ......+...++. ....+|+||++...+++.+..|...|..+. ..+-||+||..
T Consensus 642 ~l~g~~~g~~g-~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLIGAPPGYVG-YEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HhcCCCCCccC-cccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 12111111000 0111223333322 223489999998778888998888775431 23447777765
No 104
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.0027 Score=61.10 Aligned_cols=121 Identities=9% Similarity=0.080 Sum_probs=61.1
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 042081 110 FESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV 189 (422)
Q Consensus 110 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 189 (422)
....++....++..-.....-+.++|..|+|||.||..+++. +...-..++++++ .+++..+...-. ...
T Consensus 165 ~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~------~~l~~~l~~~~~-~~~- 234 (329)
T PRK06835 165 MEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA------DELIEILREIRF-NND- 234 (329)
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH------HHHHHHHHHHHh-ccc-
Confidence 334444444455431112366899999999999999999983 3222223555543 333333322111 100
Q ss_pred CccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHH--HHHHhhcCC-CCCCcEEEEeecC
Q 042081 190 SVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVL--DDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
.+.... + +.+. .-=||||||+-.+....| ..+...+.. -..+..+||||..
T Consensus 235 -----~~~~~~---~-~~l~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 235 -----KELEEV---Y-DLLI-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred -----hhHHHH---H-HHhc-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 111111 2 2222 224899999964433333 233332221 1234568888876
No 105
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.06 E-value=0.00038 Score=61.02 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
..-+.++|..|+|||.||..+.+. -+...+. +.|++ ..+++..+- ..... .........+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~~-v~f~~------~~~L~~~l~----~~~~~-----~~~~~~~~~l--- 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE-AIRKGYS-VLFIT------ASDLLDELK----QSRSD-----GSYEELLKRL--- 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEE------HHHHHHHHH----CCHCC-----TTHCHHHHHH---
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH-hccCCcc-eeEee------cCceecccc----ccccc-----cchhhhcCcc---
Confidence 456899999999999999999873 1222232 45553 344444442 22111 2222232222
Q ss_pred cCCceEEEEEeCCCCCChhHHHH--HHhhcCC-CCCCcEEEEeecCh
Q 042081 208 LTNKKYFIVLDDYCEESDDVLDD--LEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
. +-=||||||+-.+....|.. +...+.. -.++ .+||||...
T Consensus 107 -~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 107 -K-RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp -H-TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred -c-cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 2 23488899997544444422 1111110 1123 588888764
No 106
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.06 E-value=0.0017 Score=60.44 Aligned_cols=92 Identities=10% Similarity=0.132 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc-eeEEEEeCCCCC-HHHHHHHHHHHhCCCCC-------CCccC-CCCH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFD-CHAWVRVSIAYN-FRMILDDIIKSVMPPSR-------VSVVI-GEDY 197 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~il~~l~~~~~-------~~~~~-~~~~ 197 (422)
-+-++|.|..|+|||||++.+++ .++.+|. ..+++.+++... +.++..++...-..... ...+. ....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999999999998 4554553 466677776643 45566655543111100 00000 0011
Q ss_pred HHHHHHHHHhc---CCceEEEEEeCCC
Q 042081 198 QLKKSILRDYL---TNKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~~~L---~~kr~LlVLDdv~ 221 (422)
....-.+.+++ +++.+||++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 12223345555 3899999999985
No 107
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.06 E-value=0.0062 Score=51.79 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCC
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYN 171 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 171 (422)
++.|+|.+|+||||++..+... ....-..+++++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3679999999999999999873 322234577777665543
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0074 Score=62.81 Aligned_cols=140 Identities=10% Similarity=-0.001 Sum_probs=72.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|.+..++.|.+.+..+. -..-+.++|..|+||||+|+.+.+.--...... .-.+ ..+..-...+.|.......
T Consensus 28 Gq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~g~h~D 102 (598)
T PRK09111 28 GQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIMEGRHVD 102 (598)
T ss_pred CcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhcCCCCc
Confidence 99999999999887653 345688999999999999999987311111100 0000 0001111111121111100
Q ss_pred CCC-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee-cChhH
Q 042081 187 SRV-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV-TDPDF 253 (422)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~v 253 (422)
--. ........+++...+... ..+++-++|+|++..-+....+.|...+-.-...+++|++| ....+
T Consensus 103 v~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 103 VLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred eEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 000 000012333333322111 12455579999997556667777887776544566666555 43333
No 109
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.04 E-value=0.0005 Score=55.97 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|.|.|++|+||||+|+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 110
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.04 E-value=0.0037 Score=68.04 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=71.0
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|.+..++.|...+... +....++.++|+.|+|||+||+.+++. .-..-...+.+..+. +... ....
T Consensus 572 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se-~~~~----~~~~ 644 (857)
T PRK10865 572 GQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSE-FMEK----HSVS 644 (857)
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHH-hhhh----hhHH
Confidence 8888888888887632 122357889999999999999999872 211111223333322 1111 1122
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCc-eEEEEEeCCCCCChhHHHHHHhhcCCCC-----------CCcEEEEeec
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNK-KYFIVLDDYCEESDDVLDDLEEVLPENQ-----------NGSRVLMTVT 249 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR 249 (422)
.+.+.... ....++ ...+.+.++.+ .-+|+||++...+++.+..+...+..+. ..+-||+||.
T Consensus 645 ~LiG~~pg----y~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 645 RLVGAPPG----YVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred HHhCCCCc----ccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 22221111 011111 11123333222 3599999998777888888887764321 1233677776
Q ss_pred C
Q 042081 250 D 250 (422)
Q Consensus 250 ~ 250 (422)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 111
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.04 E-value=0.012 Score=53.62 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=69.6
Q ss_pred hhhhhHHHHHHHHhc--CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIE--GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|.+..++.|++-... .+....-+.++|..|.|||+|++.+.+...-+. ---|.+.+.
T Consensus 31 Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~----------------- 89 (249)
T PF05673_consen 31 GIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE----------------- 89 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-----------------
Confidence 999999988876543 122355677899999999999999988311111 111222221
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCC---CCC-cEEEEeecChhHhh
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPEN---QNG-SRVLMTVTDPDFLS 255 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~---~~g-s~ilvTTR~~~va~ 255 (422)
+..+...+.+.|+. ...||+|.+||+..+ .......++..|-.+ .+. -.|..||-.+++..
T Consensus 90 ------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 ------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 01344445555542 346999999999754 445566666666422 222 34445555555544
No 112
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.001 Score=60.60 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHhc-CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 110 FESGREELFDLLIE-GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 110 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+.+++|.+.+.. ......+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56777888888875 334688999999999999999999987
No 113
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.03 E-value=0.0092 Score=53.89 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=75.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-------------------CCc--ceeEEEEeCCCC------C---------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-------------------FYF--DCHAWVRVSIAY------N--------- 171 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F--~~~~wv~vs~~~------~--------- 171 (422)
-.+++|+|+.|+|||||...+.--.+-. ..| ..+.+| -|.| +
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfv--FQ~~nLl~~ltv~ENv~lpl 108 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFV--FQNFNLLPDLTVLENVELPL 108 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEE--CccCCCCCCCCHHHHHHhHH
Confidence 4589999999999999999886321100 011 112222 1211 1
Q ss_pred ---------HHHHHHHHHHHhCCCCCC--Ccc-CCCCHHHHHHHHHHhcCCceEEEEEeCCC-CCChhHHHHHHhhcCC-
Q 042081 172 ---------FRMILDDIIKSVMPPSRV--SVV-IGEDYQLKKSILRDYLTNKKYFIVLDDYC-EESDDVLDDLEEVLPE- 237 (422)
Q Consensus 172 ---------~~~~~~~il~~l~~~~~~--~~~-~~~~~~~~~~~l~~~L~~kr~LlVLDdv~-~~~~~~~~~l~~~l~~- 237 (422)
..+....+++.++..... ..| +-..-++..-.+.+.|-..+-+|+.|.=- +-+.+.=+.+...|..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 109 LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 123445566665554221 222 22455666677888888889999999521 0022222333333332
Q ss_pred -CCCCcEEEEeecChhHhhhccc
Q 042081 238 -NQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 238 -~~~gs~ilvTTR~~~va~~~~~ 259 (422)
...|..||+.|.+..+|..+..
T Consensus 189 ~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 189 NKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHhcCCEEEEEcCCHHHHHhCCE
Confidence 2347789999999999987654
No 114
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.01 E-value=0.003 Score=63.09 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
...+.|+|..|+|||+|++.+++ .+.+..+ .+++++ ..++...+...+... ......
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~---------~~~~~~---- 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNN---------KMEEFK---- 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC---------CHHHHH----
Confidence 45788999999999999999998 4433332 244553 334444555544321 222222
Q ss_pred HhcCCceEEEEEeCCCCCChh-H-HHHHHhhcCC-CCCCcEEEEeecC
Q 042081 206 DYLTNKKYFIVLDDYCEESDD-V-LDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~~~~~~-~-~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
+.+.+ .-+|+|||+...... . .+.+...+.. ...|..+|+||..
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 22322 238899999632111 1 1223222211 1235568887764
No 115
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00099 Score=68.48 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHhc----CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc
Q 042081 109 EFESGREELFDLLIE----GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 158 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 158 (422)
|.++.+++|++.|.- ..-+-+++++||++|+|||+|++.|+. .+.+.|
T Consensus 327 GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 327 GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 999999999999853 233458999999999999999999998 666665
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.01 E-value=0.0011 Score=60.75 Aligned_cols=37 Identities=5% Similarity=0.097 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV 166 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 166 (422)
...+.|+|..|+|||.|++.+++ .....-..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence 46789999999999999999987 32222123566653
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.015 Score=59.20 Aligned_cols=41 Identities=15% Similarity=-0.066 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|-+.....|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus 20 Gq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 20 GQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred ChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999887653 345677899999999999999876
No 118
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.00 E-value=0.0047 Score=55.44 Aligned_cols=52 Identities=23% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCch-hhhhhHHHHHHHHhc---CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc
Q 042081 105 LDKS-EFESGREELFDLLIE---GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 158 (422)
Q Consensus 105 ~~~~-Gr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 158 (422)
.++. |-+.-++.+.-++.. ..+.+.-+..+|++|+||||||..+.+ .....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 4455 888888876555542 334577888999999999999999999 444444
No 119
>PHA00729 NTP-binding motif containing protein
Probab=96.99 E-value=0.0018 Score=58.43 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++++.+...+ ..-|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 4455555443 56788999999999999999988
No 120
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.98 E-value=0.0042 Score=62.88 Aligned_cols=116 Identities=9% Similarity=0.136 Sum_probs=60.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce--eEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC--HAWVRVSIAYNFRMILDDIIKSVMPPSRVS 190 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il~~l~~~~~~~ 190 (422)
....+..+....+.....+.|+|..|+|||+|++.+.+ .+...++. +++++ ..++..++...+..
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~------~~~~~~~~~~~~~~----- 199 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVT------SEKFTNDFVNALRN----- 199 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHc-----
Confidence 34444444333233356789999999999999999998 45444422 44553 33444444444422
Q ss_pred ccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCCh-h-HHHHHHhhcCC-CCCCcEEEEeecC
Q 042081 191 VVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESD-D-VLDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 191 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-~-~~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
..... +.+.++ +.-+|||||+..-.. . ..+.+...+.. -..|..||+||..
T Consensus 200 ----~~~~~----~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 200 ----NTMEE----FKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred ----CcHHH----HHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 12222 233333 244899999963211 1 11223222210 1234568888765
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.98 E-value=0.0043 Score=57.95 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...-+.++|++|+||||+|+.+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHH
Confidence 456678999999999999999976
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.013 Score=61.22 Aligned_cols=140 Identities=10% Similarity=-0.002 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEE-eCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVR-VSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~il~~l~~~~ 187 (422)
|-+..+..|.+++..+. -...+.++|+.|+||||+|..+.+.---...++.-.|.. +...+..-...+.+...-..+.
T Consensus 20 GQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~ 98 (620)
T PRK14954 20 AQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNI 98 (620)
T ss_pred CcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCe
Confidence 88888888888886543 345588999999999999998876311111111001110 0011111111111111000000
Q ss_pred CC-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeec
Q 042081 188 RV-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVT 249 (422)
Q Consensus 188 ~~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 249 (422)
.. ........+++...+... ..+++-++|+|++..-+....+.|...+-.-...+.+|++|.
T Consensus 99 ~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 99 SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00 000012244444433322 234555789999875566667788887765444565555553
No 123
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0092 Score=57.39 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=70.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-------------------CcceeEEEEeCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-------------------YFDCHAWVRVSIA 169 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs~~ 169 (422)
|-+....++..+..........+.+.|+.|+||||+|..+.+.---.. ..+....+..+..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~ 84 (325)
T COG0470 5 PWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDL 84 (325)
T ss_pred cchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccccc
Confidence 445566777777775443445699999999999999999887311000 0122333333332
Q ss_pred CC---HHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEE
Q 042081 170 YN---FRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLM 246 (422)
Q Consensus 170 ~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 246 (422)
.. ..+..+++.+....... .++.-++++|++..-+.+.-+.+...+-.....+.+|+
T Consensus 85 ~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 85 RKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred CCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 22 12223333322222110 24667899999875555556667666665566788888
Q ss_pred eecC
Q 042081 247 TVTD 250 (422)
Q Consensus 247 TTR~ 250 (422)
+|..
T Consensus 145 ~~n~ 148 (325)
T COG0470 145 ITND 148 (325)
T ss_pred EcCC
Confidence 8874
No 124
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.94 E-value=0.0045 Score=61.27 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHhc---C--------CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE---G--------QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~---~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..+++|.+.+.- . -...+-+.++|++|.|||+||+.+++.
T Consensus 149 Gl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 149 GLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 888888888876631 1 124567889999999999999999983
No 125
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.93 E-value=0.0022 Score=59.70 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCC---c-ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC---C--ccCCCCH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFY---F-DCHAWVRVSIAYNFRMILDDIIKSVMPPSRV---S--VVIGEDY 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~---~--~~~~~~~ 197 (422)
.-.+.=|+|.+|+|||.|+.+++-...+... . ..++|++-...|+...+. +|++........ . .....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 4568999999999999999888754343322 2 348999988889887764 566655432111 0 0001344
Q ss_pred HHHHHHHH---Hhc-CCceEEEEEeCCC
Q 042081 198 QLKKSILR---DYL-TNKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~---~~L-~~kr~LlVLDdv~ 221 (422)
+++...+. ..+ ..+--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 44444443 333 2455699999984
No 126
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.93 E-value=0.0071 Score=60.89 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCc-c-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF-D-CHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
..-+.|+|..|+|||+|++.+++ .+.+.. . .++|++ ..+++.++...+... ...+ +.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~---------~~~~----f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHhcc---------cHHH----HH
Confidence 45699999999999999999998 444433 2 355664 345556665555321 1222 23
Q ss_pred HhcCCceEEEEEeCCC
Q 042081 206 DYLTNKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~ 221 (422)
+.+..+.-+|++||+.
T Consensus 189 ~~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQ 204 (440)
T ss_pred HHHHhcCCEEEEechh
Confidence 3333345589999996
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.93 E-value=0.0033 Score=63.36 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSIL 204 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 204 (422)
....+.|+|..|+|||+|++.+.+ .+..... .++++ +..++...+...+.... .....+
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-----------~~~~~~ 200 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTH-----------KEIEQF 200 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-----------hHHHHH
Confidence 345688999999999999999988 3332221 23344 33456666666554211 112233
Q ss_pred HHhcCCceEEEEEeCCCCCC--hhHHHHHHhhcCC-CCCCcEEEEeecCh
Q 042081 205 RDYLTNKKYFIVLDDYCEES--DDVLDDLEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 205 ~~~L~~kr~LlVLDdv~~~~--~~~~~~l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
.+.+. ..-+||+||+.... ....+.+...+.. ...|..||+|+...
T Consensus 201 ~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 201 KNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred HHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 33343 33488899996322 2222333333321 12355788887653
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=96.90 E-value=0.0072 Score=57.22 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+.++|.+|+||||+|+.++.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3477899999999999999976
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.90 E-value=0.0058 Score=62.08 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEG-----------QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..+++|.+.+.-. -...+-+.++|++|.|||++|+.+++.
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 7999999988876421 123556889999999999999999983
No 130
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.89 E-value=0.0043 Score=54.35 Aligned_cols=122 Identities=10% Similarity=-0.013 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCC-CCCCCc---------cCC-CC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMP-PSRVSV---------VIG-ED 196 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~-~~~~~~---------~~~-~~ 196 (422)
-.+++|+|..|.|||||++.+..-.. .-.+.+++.-. +.......+-+.++- ...... +.. ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 46899999999999999999987421 12233332111 111110011111100 000000 001 11
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 197 YQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 197 ~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
-+...-.+...+-.++-+++||.-... +...-+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 223334455666677789999976421 33333333333322123677889998877664
No 131
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.89 E-value=0.0054 Score=58.03 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-+.++|.+|.|||++|+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 577999999999999977665
No 132
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.88 E-value=0.01 Score=52.01 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=68.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEE---eCCCCCHHHH------HHHHHHHhCCCCCC-CccCC-CC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVR---VSIAYNFRMI------LDDIIKSVMPPSRV-SVVIG-ED 196 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~------~~~il~~l~~~~~~-~~~~~-~~ 196 (422)
-.+++|+|..|.|||||.+.++.- .....+.+++. +. ..+.... .-++++.++..... ..+.. ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 468999999999999999999873 22334444442 21 1122221 11245555433211 11111 22
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCC-CC-CcEEEEeecChhHhhh
Q 042081 197 YQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPEN-QN-GSRVLMTVTDPDFLSS 256 (422)
Q Consensus 197 ~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTTR~~~va~~ 256 (422)
-+...-.+...+...+-+++||.--.. +......+...+..- .. |..||++|.+......
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 233334456666677889999975421 344444454444321 12 6778999988766543
No 133
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.011 Score=51.75 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC-Cc--cC---Ccc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCccCC-CC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN-HV--KF---YFD--CHAWVRVSIAYNFRMILDDIIKSVMPPSR--VSVVIG-ED 196 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~~~~~-~~ 196 (422)
-.+++|+|..|+|||||.+.+..+. .+ .. .|. ...|+ .+ .+.+..++.... ...+.. ..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999986421 11 10 110 12232 22 345666664321 111111 22
Q ss_pred HHHHHHHHHHhcCCc--eEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHhh
Q 042081 197 YQLKKSILRDYLTNK--KYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 197 ~~~~~~~l~~~L~~k--r~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va~ 255 (422)
-+...-.+...+..+ +-+++||.--.. +......+...+.. ...|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 223333455555566 678888975321 44444444444432 124677999999887654
No 134
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0032 Score=58.47 Aligned_cols=93 Identities=18% Similarity=0.098 Sum_probs=50.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
++...+..+......=+ ...-+.++|.+|+|||.||..+.+..- +..+. +.++ +..+++.++.......
T Consensus 87 ~~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~~-- 155 (254)
T COG1484 87 IDKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDEG-- 155 (254)
T ss_pred hhHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhcC--
Confidence 44444444443332211 356688999999999999999999422 22233 4444 3445555555443321
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE 223 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~ 223 (422)
.....+...+. +-=||||||+--+
T Consensus 156 ----------~~~~~l~~~l~-~~dlLIiDDlG~~ 179 (254)
T COG1484 156 ----------RLEEKLLRELK-KVDLLIIDDIGYE 179 (254)
T ss_pred ----------chHHHHHHHhh-cCCEEEEecccCc
Confidence 11222222222 2238999998643
No 135
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0099 Score=54.56 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC-----cc------CCc---ceeEEEEe----CCCC--CH---------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNH-----VK------FYF---DCHAWVRV----SIAY--NF--------------- 172 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~-----~~------~~F---~~~~wv~v----s~~~--~~--------------- 172 (422)
-.+++|+|+.|.|||||.+.+..--. +. ..+ ..+.||.- ...| ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 46999999999999999999986111 00 001 13445521 1111 11
Q ss_pred -------HHHHHHHHHHhCCCCCC--CccCCCCHHHHHHHHHHhcCCceEEEEEeC----CCCCChhHHHHHHhhcCCCC
Q 042081 173 -------RMILDDIIKSVMPPSRV--SVVIGEDYQLKKSILRDYLTNKKYFIVLDD----YCEESDDVLDDLEEVLPENQ 239 (422)
Q Consensus 173 -------~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~l~~~L~~kr~LlVLDd----v~~~~~~~~~~l~~~l~~~~ 239 (422)
.+...+.++.++...-. ++..-..-+...-.|.+.|..++=||+||. |..........+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 24455566666554321 222224445556678888999999999995 3211334444454555433
Q ss_pred CCcEEEEeecChhHhhh
Q 042081 240 NGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 240 ~gs~ilvTTR~~~va~~ 256 (422)
|+.||++|.+-.....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 8899999998765544
No 136
>PRK04296 thymidine kinase; Provisional
Probab=96.84 E-value=0.0032 Score=55.87 Aligned_cols=116 Identities=13% Similarity=0.016 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhc
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYL 208 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 208 (422)
.++.|+|..|.||||+|..+.. +...+-..++.+. ..++.......++.+++..... . ......++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~-~-~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA-I-PVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc-e-EeCChHHHHHHHHh-h
Confidence 4778999999999999988887 3322222233331 1112222233445555432211 0 01344555555555 3
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhH
Q 042081 209 TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDF 253 (422)
Q Consensus 209 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 253 (422)
.++.-+||+|.+..-+.++...+...+ ...|..||+|.++.+.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 345569999998633344334444433 2347889999998554
No 137
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.82 E-value=0.0019 Score=56.48 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV 164 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 164 (422)
...+|.++|+.|+||||+|+.++. .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999998 555455555554
No 138
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.82 E-value=0.0062 Score=58.33 Aligned_cols=101 Identities=10% Similarity=0.047 Sum_probs=61.3
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC---Cc-ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-----
Q 042081 120 LLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF---YF-DCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS----- 190 (422)
Q Consensus 120 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~----- 190 (422)
+|-.+=+.-+++-|+|.+|+|||+|+.+++-...... .- ...+|++....|++.++. ++++.++.....-
T Consensus 88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~ 166 (313)
T TIGR02238 88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNIL 166 (313)
T ss_pred HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEE
Confidence 3444434568999999999999999988764322221 11 358899998888888765 4566665432210
Q ss_pred ccCCCCHHHHH---HHHHHhcC-CceEEEEEeCCC
Q 042081 191 VVIGEDYQLKK---SILRDYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 191 ~~~~~~~~~~~---~~l~~~L~-~kr~LlVLDdv~ 221 (422)
.....+.++.. ..+...+. ++--|||+|.+-
T Consensus 167 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 167 YARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 00112344333 33333343 345589999985
No 139
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.80 E-value=0.03 Score=48.79 Aligned_cols=127 Identities=15% Similarity=0.195 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEE---------------------eCCCC---------------
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVR---------------------VSIAY--------------- 170 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---------------------vs~~~--------------- 170 (422)
.-..+-++|.+|.|||||.+.+|...+-. .+.+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 35688999999999999999999854321 1233331 01111
Q ss_pred ------CHHHH---HHHHHHHhCCCCCC-CccC-CCCHHHHHHHHHHhcCCceEEEEEeC----CCCCChhHHHHHHhhc
Q 042081 171 ------NFRMI---LDDIIKSVMPPSRV-SVVI-GEDYQLKKSILRDYLTNKKYFIVLDD----YCEESDDVLDDLEEVL 235 (422)
Q Consensus 171 ------~~~~~---~~~il~~l~~~~~~-~~~~-~~~~~~~~~~l~~~L~~kr~LlVLDd----v~~~~~~~~~~l~~~l 235 (422)
...++ ..+.++..+..... ..|. ...-++..-.|...+-+++-||+-|. +. ..-.|+ +...|
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD--p~~s~~-im~lf 180 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD--PDLSWE-IMRLF 180 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCC--hHHHHH-HHHHH
Confidence 12222 33334444433221 1222 25566667778888889999999984 43 333444 44444
Q ss_pred C-CCCCCcEEEEeecChhHhhhccc
Q 042081 236 P-ENQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 236 ~-~~~~gs~ilvTTR~~~va~~~~~ 259 (422)
. -+..|..||++|.+.++...+..
T Consensus 181 eeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 181 EEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHhhcCcEEEEEeccHHHHHhccC
Confidence 3 45679999999999998877644
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.80 E-value=0.01 Score=64.52 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=72.8
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|-+..++.|.+.+... ......+.++|+.|+|||+||+.+.. .+-..-...+-+..+.-.+...+ .+
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~----~~ 586 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV----SK 586 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH----HH
Confidence 8888899988887632 22245677899999999999999987 22111112233333321111111 11
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCce-EEEEEeCCCCCChhHHHHHHhhcCCC-----------CCCcEEEEeec
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNKK-YFIVLDDYCEESDDVLDDLEEVLPEN-----------QNGSRVLMTVT 249 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTR 249 (422)
-++.+... .. ..... .+.+.++.++ .+|+||++...+++.++.|...+-.+ ...+-+|+||.
T Consensus 587 l~g~~~gy-vg-~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 587 LIGSPPGY-VG-YNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred hcCCCCcc-cC-cCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 11211110 00 01112 2344444444 58899999877888888888777543 13455677766
Q ss_pred Ch
Q 042081 250 DP 251 (422)
Q Consensus 250 ~~ 251 (422)
..
T Consensus 661 ~g 662 (821)
T CHL00095 661 LG 662 (821)
T ss_pred cc
Confidence 53
No 141
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0057 Score=64.51 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=73.5
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc---eeEEEEeCCCCCHHHHHH-
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFD---CHAWVRVSIAYNFRMILD- 177 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~~~~- 177 (422)
|-+..++.+.+.+... .........+|+.|||||.||+.+.. ..|+ ..+-+ |+.+...
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~------DMSEy~Ek 563 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRI------DMSEYMEK 563 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceee------chHHHHHH
Confidence 8999999998888642 23467788899999999999999887 2342 22223 2322211
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceE-EEEEeCCCCCChhHHHHHHhhcCCC
Q 042081 178 DIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKY-FIVLDDYCEESDDVLDDLEEVLPEN 238 (422)
Q Consensus 178 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~~~~~~~l~~~l~~~ 238 (422)
.-+..|-+..+. -...++ .-.|.+.++.++| +|.||.+...+++.++-|...|.++
T Consensus 564 HsVSrLIGaPPG----YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 HSVSRLIGAPPG----YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHhCCCCC----Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 122233232221 122222 4456677778877 7788999888899999998887644
No 142
>PRK07667 uridine kinase; Provisional
Probab=96.79 E-value=0.0021 Score=57.22 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.|.+.|........+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5667777776666678999999999999999999987
No 143
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.019 Score=59.58 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=68.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.---..... ...++.-...+.|.........
T Consensus 20 GQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 20 GQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCCCceE
Confidence 87777777777776542 346788899999999999999987321110000 0011111111122111000000
Q ss_pred CCcc--CCCCHHHHHHHHHHh-----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 VSVV--IGEDYQLKKSILRDY-----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~~~~--~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
.+. .....+++.. +.+. ..+++-+||+|++..-+...++.|...+-.......+|++|.+
T Consensus 92 -eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 92 -EIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred -EEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 000 0012222222 2222 2356679999999755667778888777543334556665544
No 144
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.0069 Score=54.88 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=52.6
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CccCCCC
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV--SVVIGED 196 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--~~~~~~~ 196 (422)
++|..+=..-.++.|.|.+|+||||||.+++.. ....=..++|++....+. +-+++++......... ...+..+
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMD 85 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCC
Confidence 334334345789999999999999999998863 222222467777655554 3333333321000000 0000122
Q ss_pred HHHH---HHHHHHhcCCceEEEEEeCCC
Q 042081 197 YQLK---KSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 197 ~~~~---~~~l~~~L~~kr~LlVLDdv~ 221 (422)
..++ ...+...+..+.-+||+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 86 FNEQGRAIQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEechH
Confidence 2222 234444454446688999874
No 145
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.76 E-value=0.0026 Score=53.26 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=60.5
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCc-cCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
|....++++.+.+..-......|.|.|..|+||+++|+.++..... ...|...-+ .. .+ .+++..
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~---~~-~~-----~~~l~~----- 67 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDC---AS-LP-----AELLEQ----- 67 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCH---HC-TC-----HHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEech---hh-Cc-----HHHHHH-----
Confidence 4445566666666543223456789999999999999999885322 122211000 00 00 111111
Q ss_pred CCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCC-CCCCcEEEEeecCh
Q 042081 188 RVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
. +.--|+|+|+..-+.+....+...+.. .....|+|.||...
T Consensus 68 --------------------a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 --------------------A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------------C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------------c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 333577888875566677777776653 25678999998864
No 146
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.76 E-value=0.0027 Score=56.56 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI-AYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~ 186 (422)
++|+.++|+.|+||||.+.+++.. .+..=..+..++... .....+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 479999999999999888777763 322222355666543 334556677777777754
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.76 E-value=0.0039 Score=62.71 Aligned_cols=101 Identities=11% Similarity=0.187 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
...+.|+|..|+|||+|++.+.+ .+...-..+++++ ...+...+...+... . ...++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 45688999999999999999998 3332222244553 334444444444321 1 1224444
Q ss_pred cCCceEEEEEeCCCCCChhH--HHHHHhhcCC-CCCCcEEEEeecC
Q 042081 208 LTNKKYFIVLDDYCEESDDV--LDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
+.. .-+|++||+....... .+.+...+.. ...|..||+||..
T Consensus 200 ~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 200 YRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred ccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 433 3488889986322111 1222222210 1135678888854
No 148
>PRK06620 hypothetical protein; Validated
Probab=96.75 E-value=0.0098 Score=53.76 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+.+-|+|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998874
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.022 Score=59.33 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+
T Consensus 20 Gq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 20 GQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 98888899998887653 345678899999999999999876
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.75 E-value=0.0033 Score=68.34 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+++++++++.|.... ..-+.++|.+|+|||++|..++.
T Consensus 183 gr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 183 GREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 99999999999998654 22346999999999999998877
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0057 Score=65.34 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=63.6
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|-++.++.|.+.+... ......+.++|+.|+|||+||+.+... .... .+.+..+.-.... . ..
T Consensus 462 GQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~~---~i~id~se~~~~~----~-~~ 531 (758)
T PRK11034 462 GQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGIE---LLRFDMSEYMERH----T-VS 531 (758)
T ss_pred CcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCCC---cEEeechhhcccc----c-HH
Confidence 7788888888887631 223457889999999999999999873 3222 2233333211111 1 12
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCC-ceEEEEEeCCCCCChhHHHHHHhhcC
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTN-KKYFIVLDDYCEESDDVLDDLEEVLP 236 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~~~~~~~l~~~l~ 236 (422)
.+.+...... +.+ ....+.+.++. ...+|+||++...+++.++.+...+.
T Consensus 532 ~LiG~~~gyv--g~~---~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 532 RLIGAPPGYV--GFD---QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHcCCCCCcc--ccc---ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 2222111000 001 01122333333 34699999998767788888877665
No 152
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.74 E-value=0.0071 Score=58.51 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=61.1
Q ss_pred HhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCcc---CC-cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----Cc
Q 042081 121 LIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVK---FY-FDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-----SV 191 (422)
Q Consensus 121 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~-F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~ 191 (422)
|-.+=+.-++.-|+|.+|+|||+|+.+++-..... .. -...+|++....|++.++.+ +++.++..... ..
T Consensus 119 LgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~ 197 (344)
T PLN03187 119 LGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIY 197 (344)
T ss_pred cCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEE
Confidence 43343456788899999999999999886432221 11 13589999999999887654 56666554221 01
Q ss_pred cCCCCHHHHHHHHH---HhcC-CceEEEEEeCCC
Q 042081 192 VIGEDYQLKKSILR---DYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 192 ~~~~~~~~~~~~l~---~~L~-~kr~LlVLDdv~ 221 (422)
....+.+++...+. ..+. .+--|||+|.+-
T Consensus 198 ~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 198 ARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred ecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 11234444433332 2332 345589999985
No 153
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.74 E-value=0.011 Score=54.27 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=70.1
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--------
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS-------- 190 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-------- 190 (422)
++|..+=+.-+++.|+|.+|+|||+|+.++... ..+. =..++|++..+. +.++++.+ .+++......
T Consensus 16 ~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i 90 (234)
T PRK06067 16 RKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRI 90 (234)
T ss_pred HhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceE
Confidence 334344455789999999999999999998652 1222 124778877654 34555443 3333211100
Q ss_pred --------ccCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC----CCChhHHHHHHhhcCC-CCCCcEEEEeecC
Q 042081 191 --------VVIGEDYQLKKSILRDYLTN-KKYFIVLDDYC----EESDDVLDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 191 --------~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~----~~~~~~~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
.+...+.+++...+...+.. +.-++|+|.+- ..+......+...+.. ...|..+++|+..
T Consensus 91 ~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 91 FPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred EeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 00113446677777777764 55689999864 1122222333222211 1235567777764
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.0066 Score=62.69 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
...+.|+|..|+|||.|++.+++ .....+. .+++++ ..+++.++...+... ..+ .++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~~----~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KGD----SFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cHH----HHH
Confidence 45689999999999999999998 4433322 244553 344444554443221 111 233
Q ss_pred HhcCCceEEEEEeCCCCCCh-hHH-HHHHhhcCC-CCCCcEEEEeecC
Q 042081 206 DYLTNKKYFIVLDDYCEESD-DVL-DDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
+.+.. .=||||||+..... +.| +.|...+.. ...|..|||||..
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 33332 34788999964311 222 222222211 1235668888876
No 155
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.028 Score=58.96 Aligned_cols=136 Identities=13% Similarity=0.007 Sum_probs=72.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..+..|..++..+. -...+.++|..|+||||+|+.++..---...... ....+..-...+.+.........
T Consensus 20 Gq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 20 GQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred ChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCCccEE
Confidence 98888999888887653 2356788999999999999999873211100000 00111111222222221111000
Q ss_pred C-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 V-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
. ........+++.+.+... ..+++-++|+|++..-+...++.|+..+-.-...+.+|++|.+
T Consensus 94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 0 000012333333333221 1245568899999755667788888777654445555555543
No 156
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.68 E-value=0.019 Score=61.77 Aligned_cols=42 Identities=12% Similarity=0.303 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHhc----CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE----GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.+++|+++|.. +.....++.++|++|+||||+|+.+..
T Consensus 326 g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 326 GLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 999999999988863 122456899999999999999999997
No 157
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0031 Score=56.37 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=44.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRD 206 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 206 (422)
++.+|+|.|.+|+||||+|+.++. .+...+-.. ++...=+. ..-............ ..|...+.+-+...|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~~--I~~D~YYk-~~~~~~~~~~~~~n~--d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVVV--ISLDDYYK-DQSHLPFEERNKINY--DHPEAFDLDLLIEHLKD 79 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcceE--eecccccc-chhhcCHhhcCCcCc--cChhhhcHHHHHHHHHH
Confidence 468999999999999999999998 444332111 11110000 000001111111111 22334777788888888
Q ss_pred hcCCce
Q 042081 207 YLTNKK 212 (422)
Q Consensus 207 ~L~~kr 212 (422)
.+++++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 888876
No 158
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.68 E-value=0.015 Score=55.98 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 110 FESGREELFDLLIEGQ-PQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 110 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|+.-.+.|.+.|...+ ....+|+|.|.=|+||||+.+.+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455677778777653 57899999999999999999999873
No 159
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.67 E-value=0.044 Score=51.28 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=71.8
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCcc
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVV 192 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~ 192 (422)
..+.++..|.... ...-++|+|..|.|||||.+.+.. .+. ...+.+++.- ......+-..++......-......
T Consensus 97 ~~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence 4455555565432 367899999999999999999987 332 2233344311 1111001112333222211110000
Q ss_pred ---CCCCHHHHHHHHHHhcC-CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhh
Q 042081 193 ---IGEDYQLKKSILRDYLT-NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 193 ---~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 256 (422)
+..+...-...+...+. ..+-+|++|.+- ..+.+..+...+. .|..||+||.+..+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00111111222333333 478899999987 6666777766653 47789999998766443
No 160
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.67 E-value=0.0075 Score=56.98 Aligned_cols=86 Identities=20% Similarity=0.142 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCcc-CCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSIL 204 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 204 (422)
..+++.|+|.+|+||||++..+......+ +.+ .+..++.... ....+.+....+.++.+... ..+..++...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~----~~~~~~l~~~l 267 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKV----ARDPKELRKAL 267 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceec----cCCHHHHHHHH
Confidence 46799999999999999999887632222 112 3444554321 12233344444444433211 23445555555
Q ss_pred HHhcCCceEEEEEeC
Q 042081 205 RDYLTNKKYFIVLDD 219 (422)
Q Consensus 205 ~~~L~~kr~LlVLDd 219 (422)
... .+ .=+|++|.
T Consensus 268 ~~~-~~-~d~vliDt 280 (282)
T TIGR03499 268 DRL-RD-KDLILIDT 280 (282)
T ss_pred HHc-cC-CCEEEEeC
Confidence 543 33 34677774
No 161
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.64 E-value=0.011 Score=56.71 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=59.8
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCcc---C-CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVK---F-YFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV----- 189 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~----- 189 (422)
.+|..+=+.-.++.|+|.+|+|||||+..++...... . .-...+|++....+++.++ .++++.++.....
T Consensus 87 ~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i 165 (316)
T TIGR02239 87 KLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNV 165 (316)
T ss_pred HHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccE
Confidence 3444443457899999999999999999887532221 1 1124689988887887763 4455555443211
Q ss_pred CccCCCCHHHHHHHH---HHhcC-CceEEEEEeCCC
Q 042081 190 SVVIGEDYQLKKSIL---RDYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 190 ~~~~~~~~~~~~~~l---~~~L~-~kr~LlVLDdv~ 221 (422)
......+.+++...+ ...+. .+--|||+|.+-
T Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 166 AYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred EEEecCChHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 000112334433333 33343 355699999985
No 162
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.63 E-value=0.0018 Score=54.15 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=48.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCcce-eEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcC
Q 042081 131 VAILDSSGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLT 209 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 209 (422)
|.++|.+|+|||+||+.++. .. +. ..-+.++...+..+++...--. ..... .....+...++
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~------~~~~~l~~a~~---- 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS-NGQFE------FKDGPLVRAMR---- 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET--TTTTC------EEE-CCCTTHH----
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec-ccccc------ccccccccccc----
Confidence 67899999999999999988 33 32 2335677777777665432211 01000 00000000011
Q ss_pred CceEEEEEeCCCCCChhHHHHHHhhc
Q 042081 210 NKKYFIVLDDYCEESDDVLDDLEEVL 235 (422)
Q Consensus 210 ~kr~LlVLDdv~~~~~~~~~~l~~~l 235 (422)
+..++|||++...+++.+..+...+
T Consensus 65 -~~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 65 -KGGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp -EEEEEEESSCGG--HHHHHTTHHHH
T ss_pred -ceeEEEECCcccCCHHHHHHHHHHH
Confidence 7899999999644455555555544
No 163
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.63 E-value=0.011 Score=52.62 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=46.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccC-Ccc---eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKF-YFD---CHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
||+|.|.+|+||||+|+.+.. .+.. .+. .....+...-........ .-........-..|...+.+.+...|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999987 3332 222 123333222222222211 111111111111234578888888888
Q ss_pred HhcCCceEEE
Q 042081 206 DYLTNKKYFI 215 (422)
Q Consensus 206 ~~L~~kr~Ll 215 (422)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 8877776544
No 164
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.62 E-value=0.01 Score=51.22 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC--CCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI--AYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
-.+++|+|..|.|||||.+.+..- .....+.+++.-.. ..+..+... +.++- .++-..-+...-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-----~~qLS~G~~qrl~la 94 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAM-----VYQLSVGERQMVEIA 94 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEE-----EEecCHHHHHHHHHH
Confidence 468999999999999999999873 22344555543211 111111111 01110 011122233344556
Q ss_pred HhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHhhh
Q 042081 206 DYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va~~ 256 (422)
..+-.++-+++||+--.. +......+...+.. ...|..||++|.+......
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 666667788999976421 44444444444432 1236678899988765443
No 165
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.60 E-value=0.017 Score=55.65 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=61.1
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCc---
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF----DCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSV--- 191 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~--- 191 (422)
++|..+=+.-.++-|+|.+|+|||+++.+++........+ ...+|++....|++..+. ++++.++.....-.
T Consensus 93 ~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i 171 (317)
T PRK04301 93 ELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNI 171 (317)
T ss_pred HHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccE
Confidence 3343343457899999999999999999998643222111 368999998888877765 44455543221100
Q ss_pred --cCCCC---HHHHHHHHHHhcCC--ceEEEEEeCCC
Q 042081 192 --VIGED---YQLKKSILRDYLTN--KKYFIVLDDYC 221 (422)
Q Consensus 192 --~~~~~---~~~~~~~l~~~L~~--kr~LlVLDdv~ 221 (422)
-...+ ...+...+...+.. +--|||+|.+-
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 172 HVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 00011 12334555555543 34599999974
No 166
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.59 E-value=0.0084 Score=53.43 Aligned_cols=108 Identities=9% Similarity=0.033 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
-++..|.|.+|.||||+...+... .... ...+.+..... .....+....+.... +...........
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~----~Aa~~L~~~~~~~a~-------Ti~~~l~~~~~~ 83 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTN----KAAKELREKTGIEAQ-------TIHSFLYRIPNG 83 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSH----HHHHHHHHHHTS-EE-------EHHHHTTEECCE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcH----HHHHHHHHhhCcchh-------hHHHHHhcCCcc
Confidence 467888999999999999988762 2222 12222222222 122223333322111 100000000000
Q ss_pred c------CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 208 L------TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 208 L------~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
- ..++-+||+|.++..+...+..+....+. .|+|+|+.==..
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 0 12334999999986677788888887764 467777654333
No 167
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.59 E-value=0.019 Score=52.57 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 125 QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 125 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.....+++|.|..|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999999987
No 168
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.046 Score=55.98 Aligned_cols=134 Identities=10% Similarity=0.004 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|-+...+.|...+..+. -...+.++|..|+||||+|+.+.+.---...-+. .++..-.....+........-
T Consensus 18 Gqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 18 GQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcCCCeEE
Confidence 88888888888887653 3557789999999999999987762100000000 000000000000000000000
Q ss_pred C-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 V-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
. ........+++.+.+... ..+++-++|+|++..-+.+..+.|+..+-.-...+++|++|.+
T Consensus 90 eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 90 EMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred EeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 0 000001233333333221 1245668999999766777778888777654556777777755
No 169
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.58 E-value=0.0055 Score=51.30 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999986
No 170
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.002 Score=54.36 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCC-cce
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFY-FDC 160 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~ 160 (422)
.--|.|.|++|+|||||++.+.+ .+++. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 45689999999999999999998 44433 654
No 171
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.024 Score=57.18 Aligned_cols=41 Identities=15% Similarity=-0.039 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 21 Gq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 21 GQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999999887653 245678899999999999998876
No 172
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.56 E-value=0.043 Score=48.83 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe-------------------CCCCC-----------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV-------------------SIAYN----------------- 171 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~----------------- 171 (422)
-.|++|+|+.|+|||||.+.+..=+. .=.+.+|+.- -|.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 56999999999999999998865222 2223444421 12222
Q ss_pred --------HHHHHHHHHHHhCCCCCCC-ccC-CCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CC
Q 042081 172 --------FRMILDDIIKSVMPPSRVS-VVI-GEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQ 239 (422)
Q Consensus 172 --------~~~~~~~il~~l~~~~~~~-~~~-~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~ 239 (422)
+.+...+++..++...... -|. ...-.+..-.|.+.|.=++-++.+|..-.. +++.-..++..+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 3344555666666543321 121 244556666788889888889999986422 56555555554442 34
Q ss_pred CCcEEEEeecChhHhhhccc
Q 042081 240 NGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 240 ~gs~ilvTTR~~~va~~~~~ 259 (422)
.|-..||.|.....|..+..
T Consensus 185 eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred cCCeEEEEechhHHHHHhhh
Confidence 57778888888777766544
No 173
>PRK14974 cell division protein FtsY; Provisional
Probab=96.55 E-value=0.035 Score=53.58 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccC-CcceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCccCCCCHHHH-HH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDCHAWVRVSIAY--NFRMILDDIIKSVMPPSRVSVVIGEDYQLK-KS 202 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~-~~ 202 (422)
++.+|.++|++|+||||++..++.. ... .+. ++.+.. ..+ ...+-++.....++.+... .....+...+ .+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~-~~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIK-HKYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceec-ccCCCCHHHHHHH
Confidence 4789999999999999988777762 222 232 223332 222 2334455566666543221 1111333332 23
Q ss_pred HHHHhcCCceEEEEEeCCCCC--ChhHHHHHHh
Q 042081 203 ILRDYLTNKKYFIVLDDYCEE--SDDVLDDLEE 233 (422)
Q Consensus 203 ~l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~ 233 (422)
.+........=+|++|-.-.. +...+..+..
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~ 246 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELKK 246 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccCCcHHHHHHHHH
Confidence 333322222238888877522 3344455543
No 174
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.55 E-value=0.014 Score=53.80 Aligned_cols=131 Identities=12% Similarity=0.058 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC-----CCCHHHHHHHHHHHhCCCCCC--CccCC-CCHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI-----AYNFRMILDDIIKSVMPPSRV--SVVIG-EDYQ 198 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~il~~l~~~~~~--~~~~~-~~~~ 198 (422)
.-.+++|||..|.|||||++.+.. +.+.-.+.+++...+ .....+-..+++..++..... +-|.. ..-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 356899999999999999999986 333333444443221 222344566777777644321 12222 2333
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcC--CCCCCcEEEEeecChhHhhhcccC
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLP--ENQNGSRVLMTVTDPDFLSSFDLE 260 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~--~~~~gs~ilvTTR~~~va~~~~~~ 260 (422)
...-.+.+.|.-++-|||.|.--. -+...-.++...|. ....|-..|..|.+-.++..++..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 334457788888999999997431 12222233333332 122366788889998888776653
No 175
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.55 E-value=0.0028 Score=61.14 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHhcC----CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEG----QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.++.+++|++++... ....+++.++|++|+||||||..+.+.
T Consensus 55 G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 55 GMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999763 234689999999999999999999884
No 176
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.55 E-value=0.019 Score=55.59 Aligned_cols=102 Identities=9% Similarity=0.042 Sum_probs=62.3
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC---c-ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC----
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY---F-DCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS---- 190 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~---- 190 (422)
++|..+-..-.++-|.|.+|+|||+|+..++-....... - ..++|++....|.+.++ .+|++.++.....-
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i 192 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENV 192 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccce
Confidence 334444345788899999999999999988753222111 1 25899999999988775 45566665433210
Q ss_pred -ccCCCCHHHHHHHHH---Hhc-CCceEEEEEeCCC
Q 042081 191 -VVIGEDYQLKKSILR---DYL-TNKKYFIVLDDYC 221 (422)
Q Consensus 191 -~~~~~~~~~~~~~l~---~~L-~~kr~LlVLDdv~ 221 (422)
.....+.+.+...+. ..+ ..+--|||+|.+-
T Consensus 193 ~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 193 AYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 011134444443333 223 3456699999985
No 177
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.54 E-value=0.015 Score=62.97 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=36.7
Q ss_pred hhhhhHHHHHHHHhc----CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc
Q 042081 109 EFESGREELFDLLIE----GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 158 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 158 (422)
|.++.++.|.+++.. ......++.++|++|+|||++|+.+.+ .....|
T Consensus 324 G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 324 GLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred ChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 888889998887642 222345899999999999999999998 444344
No 178
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.54 E-value=0.0088 Score=51.85 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=63.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~ 187 (422)
|.+..+.++++.+..-.....-|.|+|..|.||+.+|+.+++...-. ..-|+.+.-. .+...+-.+++....+..
T Consensus 3 G~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~----~~pfi~vnc~~~~~~~~e~~LFG~~~~~~ 78 (168)
T PF00158_consen 3 GESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK----NGPFISVNCAALPEELLESELFGHEKGAF 78 (168)
T ss_dssp --SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT----TS-EEEEETTTS-HHHHHHHHHEBCSSSS
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc----cCCeEEEehhhhhcchhhhhhhccccccc
Confidence 45556667777666532233556699999999999999999842211 1234444433 333434344443322211
Q ss_pred CCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCC------CC-----CCcEEEEeecCh
Q 042081 188 RVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPE------NQ-----NGSRVLMTVTDP 251 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~------~~-----~gs~ilvTTR~~ 251 (422)
... .... .-.+...-.| -|+||++..-....-..|...+.. +. ...|||.||...
T Consensus 79 ~~~---~~~~---~G~l~~A~~G---tL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 79 TGA---RSDK---KGLLEQANGG---TLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp TTT---SSEB---EHHHHHTTTS---EEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccc---cccc---CCceeeccce---EEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 100 0000 1122222222 578899875455555555554431 11 246888888753
No 179
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.035 Score=58.58 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|..++..+. -...+.++|+.|+||||+|+.+..
T Consensus 22 GQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 22 GQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 88888888999887653 355678899999999999999876
No 180
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.52 E-value=0.037 Score=55.35 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.+|.++|.+|+||||++..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999998886
No 181
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.52 E-value=0.04 Score=47.60 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE-------EeCCCCC--HHHHHHHHHHHhCCCCCCCccCCCCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV-------RVSIAYN--FRMILDDIIKSVMPPSRVSVVIGEDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~vs~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~ 198 (422)
-.+++|+|..|.|||||++.+..-... ..+.+++ .+.+... ...+...+... ... .-..-+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~----~LS~G~ 96 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD----VLSGGE 96 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC----CCCHHH
Confidence 458999999999999999999874221 1121211 1222221 11222222210 100 112233
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
...-.+...+-.++-+++||.--.. +......+...+... +..||++|.+.....
T Consensus 97 ~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 97 QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 3444455666667778889975321 333334444433322 356888888876543
No 182
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.018 Score=56.18 Aligned_cols=87 Identities=20% Similarity=0.108 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCc--ceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSI-AYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSI 203 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 203 (422)
.-.++.++|+.|+||||++.++... ....+ ..+..++... .....+-++...+.++.+... ..+..++...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~----~~~~~~l~~~ 209 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA----VKDGGDLQLA 209 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe----cCCcccHHHH
Confidence 3579999999999999999999873 22222 2344554332 234455566666666554321 1222333333
Q ss_pred HHHhcCCceEEEEEeCCC
Q 042081 204 LRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 204 l~~~L~~kr~LlVLDdv~ 221 (422)
+. .+.++ -+|++|..-
T Consensus 210 l~-~l~~~-DlVLIDTaG 225 (374)
T PRK14722 210 LA-ELRNK-HMVLIDTIG 225 (374)
T ss_pred HH-HhcCC-CEEEEcCCC
Confidence 33 33444 456688774
No 183
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.50 E-value=0.034 Score=46.84 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
-.+++|+|..|.|||||++.+..-. ....+.+++.-.. .++- .++-..-+...-.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~-----~~~lS~G~~~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGY-----FEQLSGGEKMRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEE-----EccCCHHHHHHHHHHHH
Confidence 4689999999999999999998732 2223444442100 0000 00001122233345555
Q ss_pred cCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhh
Q 042081 208 LTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 256 (422)
+..++-+++||+--.. +......+...+... +..||++|.+...+..
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 6667778999975321 444445555544422 2468888888766544
No 184
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.029 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.49 E-value=0.011 Score=64.52 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
||+.++.++++.|.... ..-+.++|.+|+|||++|..+...
T Consensus 182 gr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 182 GRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 99999999999998764 334558999999999999998873
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=96.48 E-value=0.011 Score=62.11 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=51.4
Q ss_pred hhhhhHHHHHHH---HhcCC-------CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHH
Q 042081 109 EFESGREELFDL---LIEGQ-------PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDD 178 (422)
Q Consensus 109 Gr~~~~~~l~~~---L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 178 (422)
|.++.++++.+. |.... ...+-+.++|++|.|||+||+.++... ... ++.++.. ++.
T Consensus 187 G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~f~-- 253 (638)
T CHL00176 187 GIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----EFV-- 253 (638)
T ss_pred ChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----HHH--
Confidence 666665555444 43321 124568899999999999999998832 222 2333211 111
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 179 IIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 179 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
.... +.....+...+.......+++|++|++.
T Consensus 254 --~~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 254 --EMFV---------GVGAARVRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred --HHhh---------hhhHHHHHHHHHHHhcCCCcEEEEecch
Confidence 1100 0122334445555566788999999994
No 187
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.47 E-value=0.013 Score=56.14 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=57.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHH
Q 042081 124 GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKS 202 (422)
Q Consensus 124 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~ 202 (422)
+=+.-+++-|+|.+|+||||||.+++.. ....-...+|+.....+++. .+..++..... -..+..+.++...
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 3345679999999999999999998763 32333457788877666643 34444432111 0001135566666
Q ss_pred HHHHhcCC-ceEEEEEeCCC
Q 042081 203 ILRDYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 203 ~l~~~L~~-kr~LlVLDdv~ 221 (422)
.+...++. ..-|||+|.|-
T Consensus 124 i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHhccCCCEEEEcchH
Confidence 66666544 56699999874
No 188
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.051 Score=53.23 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
+.++|+++|.+|+||||++..++.. ....=..+..++.... ....+-++...+.++.+... ..+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v----~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA----VRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEe----cCCHHHHHHHHH
Confidence 4579999999999999999999762 2211112334443321 12223333433333332211 245556665554
Q ss_pred HhcCC-ceEEEEEeCCCC--CChhHHHHHHhhcC
Q 042081 206 DYLTN-KKYFIVLDDYCE--ESDDVLDDLEEVLP 236 (422)
Q Consensus 206 ~~L~~-kr~LlVLDdv~~--~~~~~~~~l~~~l~ 236 (422)
..-.. +.=+|++|-.-. .+......+...+.
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 44321 233667776532 12334455544443
No 189
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.45 E-value=0.01 Score=56.67 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=57.5
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHH
Q 042081 123 EGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKK 201 (422)
Q Consensus 123 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~ 201 (422)
.+=+.-+++-|+|.+|+||||||.++... ....=..++|+.....++.. .++.++..... ...+..+.++..
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l 122 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQAL 122 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 34345789999999999999999988763 32222346788776665543 34555443211 000113456666
Q ss_pred HHHHHhcC-CceEEEEEeCCC
Q 042081 202 SILRDYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 202 ~~l~~~L~-~kr~LlVLDdv~ 221 (422)
..+...++ +..-+||+|.|-
T Consensus 123 ~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 123 EIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHHhhccCCcEEEEcchh
Confidence 66666654 456799999875
No 190
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.44 E-value=0.0075 Score=64.79 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.+++++++.|.... ..-+.++|.+|+|||++|+.++.
T Consensus 186 gr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 186 GREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 99999999999887654 23346899999999999999987
No 191
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.44 E-value=0.02 Score=54.95 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=44.7
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc----ceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF----DCHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
.+|..+=..-.++-|+|.+|+|||+|+.+++......... ...+|++....|++.++. ++++.++.
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3343343457899999999999999999998643321111 268999988888877654 44555443
No 192
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.022 Score=53.25 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=59.6
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHH-hCCCCCCCccCCCCHHHHH
Q 042081 123 EGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKS-VMPPSRVSVVIGEDYQLKK 201 (422)
Q Consensus 123 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~~~~ 201 (422)
.+-+.-+++=|+|+.|+||||+|.+++-. .+..-...+|+.....+++..+. .+... +..-.-.+........++.
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~ 131 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIA 131 (279)
T ss_pred CCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHH
Confidence 34456789999999999999999998873 33334478999998888877643 33333 2111110111113333444
Q ss_pred HHHHHhcCCceEEEEEeCCC
Q 042081 202 SILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 202 ~~l~~~L~~kr~LlVLDdv~ 221 (422)
..+......+--|||+|.+-
T Consensus 132 ~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHhccCCCCEEEEecCc
Confidence 44444444446799999985
No 193
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.047 Score=52.68 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=30.4
Q ss_pred CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChh
Q 042081 210 NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPD 252 (422)
Q Consensus 210 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 252 (422)
+++-++|+|++..-+....+.++..+-.-..++.+|+||.+..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 3444557799986677788888887765445777888887753
No 194
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.051 Score=52.60 Aligned_cols=134 Identities=9% Similarity=0.019 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 042081 110 FESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV 189 (422)
Q Consensus 110 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 189 (422)
-+..++.|.+.+..+. -...+.++|+.|+||||+|..+.+.---....... ....-...+.+...-......
T Consensus 11 q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 11 QPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred HHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCCCEEE
Confidence 5666777777776543 46677899999999999998886531100100000 000000001110000000000
Q ss_pred Ccc--CCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 190 SVV--IGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 190 ~~~--~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
-.+ .....+++.+.+... ..+.+=++|+|++..-+....+.++..+-.-..++.+|++|.+.
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 000 012334443333222 23455578899987556667778888877655677788777653
No 195
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.042 Score=58.34 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..|+.++|+.|+||||++.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 57999999999999999988886
No 196
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=0.024 Score=55.82 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=71.4
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
||+.++..+.+++... .+..+-+=|.|.+|.|||.+...++.+..-...=..++.++.-.-..+..++..|...+...
T Consensus 154 gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~ 233 (529)
T KOG2227|consen 154 GRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQD 233 (529)
T ss_pred chHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHH
Confidence 9999999999999764 34567788899999999999999998532211112334554333345667777777776222
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCc--eEEEEEeCCC
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNK--KYFIVLDDYC 221 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~ 221 (422)
... .....+.+..+..+..+. -+|+|||.+.
T Consensus 234 ~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 234 LVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred hcC----CchhHHHHHHHHHHHhcccceEEEEechhh
Confidence 111 022255666666666653 5899999764
No 197
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.42 E-value=0.023 Score=52.40 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccC----------------Cc-ceeEEEE----------------eCC-----
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKF----------------YF-DCHAWVR----------------VSI----- 168 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----------------~F-~~~~wv~----------------vs~----- 168 (422)
.-.+++|+|+.|+|||||.+.++.--.... .+ ....++. .+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 357999999999999999999986211000 00 0111111 010
Q ss_pred ---CCC--HHHHHHHHHHHhCCCCCC--CccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC----ChhHHHHHHhhcCC
Q 042081 169 ---AYN--FRMILDDIIKSVMPPSRV--SVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE----SDDVLDDLEEVLPE 237 (422)
Q Consensus 169 ---~~~--~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----~~~~~~~l~~~l~~ 237 (422)
..+ -.++..+.++.++...-. ...+...-+.....+...|..+.=+|+||.=-.. +.-..-++...+.
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~- 185 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN- 185 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-
Confidence 011 122455556666554321 1111234444555677788888888999952110 1111112222222
Q ss_pred CCCCcEEEEeecChhHhhhccc
Q 042081 238 NQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 238 ~~~gs~ilvTTR~~~va~~~~~ 259 (422)
...|..||+++.+-+.|...+.
T Consensus 186 ~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HhcCCEEEEEecCHHHHHHhCC
Confidence 2347789999999988876655
No 198
>PRK09354 recA recombinase A; Provisional
Probab=96.41 E-value=0.014 Score=56.38 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=58.7
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHH
Q 042081 123 EGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKK 201 (422)
Q Consensus 123 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~ 201 (422)
.+=+.-+++-|+|.+|+||||||.+++.. ....=...+|+.....+++. .++.++..... -..+..+.++..
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l 127 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQAL 127 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 34345789999999999999999998763 22333457888877776652 34555443211 000113456666
Q ss_pred HHHHHhcCC-ceEEEEEeCCC
Q 042081 202 SILRDYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 202 ~~l~~~L~~-kr~LlVLDdv~ 221 (422)
..+...++. +.-|||+|.|-
T Consensus 128 ~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 128 EIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHhhcCCCCEEEEeChh
Confidence 666666643 56699999975
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.40 E-value=0.012 Score=61.38 Aligned_cols=43 Identities=16% Similarity=0.072 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHhcCC---CCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQ---PQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|-++.++++..+|.... ....++.|+|++|+||||+++.++..
T Consensus 88 ~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 88 VHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 88888899999887642 23467999999999999999999873
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.36 E-value=0.013 Score=55.85 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=73.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC-CCccCCcceeEE----EEeCCCCC-----HH----H
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN-NHVKFYFDCHAW----VRVSIAYN-----FR----M 174 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~w----v~vs~~~~-----~~----~ 174 (422)
+|..+-.--+++|++++ +..|.+.|.+|.|||-||....=. .-.++.|..++- +.+++... .+ -
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 56666666778888776 999999999999999888654321 112233433221 22333211 01 1
Q ss_pred HHHHH---HHHhCCCCCCCccCCCCHHHHHHHH---------HHhcCCc---eEEEEEeCCCCCChhHHHHHHhhcCCCC
Q 042081 175 ILDDI---IKSVMPPSRVSVVIGEDYQLKKSIL---------RDYLTNK---KYFIVLDDYCEESDDVLDDLEEVLPENQ 239 (422)
Q Consensus 175 ~~~~i---l~~l~~~~~~~~~~~~~~~~~~~~l---------~~~L~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~ 239 (422)
-++.| ++.+..... .....+...+ ..+++|+ ..+||+|.+.+-.+.+...+.. ..+
T Consensus 306 Wmq~i~DnLE~L~~~~~------~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R~G 376 (436)
T COG1875 306 WMQAIFDNLEVLFSPNE------PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---RAG 376 (436)
T ss_pred hHHHHHhHHHHHhcccc------cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---hcc
Confidence 12222 222222211 1111222211 1234454 4689999998666766665544 456
Q ss_pred CCcEEEEeecChhH
Q 042081 240 NGSRVLMTVTDPDF 253 (422)
Q Consensus 240 ~gs~ilvTTR~~~v 253 (422)
.||||++|---.++
T Consensus 377 ~GsKIVl~gd~aQi 390 (436)
T COG1875 377 EGSKIVLTGDPAQI 390 (436)
T ss_pred CCCEEEEcCCHHHc
Confidence 79999987654433
No 201
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.35 E-value=0.019 Score=57.30 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.++.++|.+|+||||+|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999877765
No 202
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.33 E-value=0.039 Score=48.28 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEE------eCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVR------VSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKK 201 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 201 (422)
-.+++|+|..|+|||||.+.+..-. ....+.+++. +.+... -..-+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~----------------------LSgGq~qr 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID----------------------LSGGELQR 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC----------------------CCHHHHHH
Confidence 4699999999999999999998632 1222333321 111111 01222334
Q ss_pred HHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhh
Q 042081 202 SILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 202 ~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~ 256 (422)
-.+...+..++-+++||.--.. +......+...+.. ...+..||++|.+......
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 4455566667778999975321 34443444443331 1223568888888766554
No 203
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.071 Score=55.31 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=71.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC---CcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF---YFDCHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
|-+..++.|..++..+. -...+.++|..|+||||+|+.+.+.---.. .++|. ...+. +.|...-..
T Consensus 20 Gqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~------~C~~C----~~i~~~~~~ 88 (563)
T PRK06647 20 GQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG------ECSSC----KSIDNDNSL 88 (563)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc------cchHH----HHHHcCCCC
Confidence 88888999999887653 355788999999999999999987311111 01110 00000 111110000
Q ss_pred CCCC-CccCCCCHHHHHHHH---HHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 186 PSRV-SVVIGEDYQLKKSIL---RDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 186 ~~~~-~~~~~~~~~~~~~~l---~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
.... ........+++.... ... ..+++-++|+|++..-+...++.|...+......+.+|++|..
T Consensus 89 dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred CeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0000 000002233333222 211 2356668999998755667788888877654456666665543
No 204
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.32 E-value=0.067 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.+|.++|..|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 205
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.31 E-value=0.039 Score=56.62 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=50.6
Q ss_pred hhhhhHHHHHHHHh---cC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHH
Q 042081 109 EFESGREELFDLLI---EG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDD 178 (422)
Q Consensus 109 Gr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 178 (422)
|.+..++++.+.+. .. ....+-+.++|++|.|||+||+.+++.. .-. ++.++. .++.
T Consensus 59 g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~~~-- 125 (495)
T TIGR01241 59 GIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SDFV-- 125 (495)
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HHHH--
Confidence 77776666555443 21 1234457899999999999999999842 222 222221 1111
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 179 IIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 179 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
....+ .....+...+.......+.+|++|++.
T Consensus 126 --~~~~g---------~~~~~l~~~f~~a~~~~p~Il~iDEid 157 (495)
T TIGR01241 126 --EMFVG---------VGASRVRDLFEQAKKNAPCIIFIDEID 157 (495)
T ss_pred --HHHhc---------ccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 11111 223334444555445667899999984
No 206
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.31 E-value=0.012 Score=63.04 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||++++.++++.|.... ..-+.++|.+|+|||++|+.++.
T Consensus 190 GR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 190 GREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 99999999999888753 22335799999999999999886
No 207
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.31 E-value=0.034 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 208
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.31 E-value=0.0072 Score=60.42 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc
Q 042081 109 EFESGREELFDLLIEG-----------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 158 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 158 (422)
|.+..+++|.+.+.-. -....-+.++|.+|.|||++|+.+++ .....|
T Consensus 187 Gl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 187 GLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 8999998888877421 12345678999999999999999998 444444
No 209
>PRK13695 putative NTPase; Provisional
Probab=96.31 E-value=0.0036 Score=54.59 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.+.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 210
>PRK10867 signal recognition particle protein; Provisional
Probab=96.30 E-value=0.02 Score=57.10 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997766654
No 211
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.29 E-value=0.015 Score=63.65 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.++.+++..|.... ..-+.++|.+|+|||++|..+..
T Consensus 177 gr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 177 GRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 99999999999997754 23445799999999999999887
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.29 E-value=0.018 Score=57.82 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
||++.++.+...+..+. -|.|.|.+|+|||+||+.+...
T Consensus 24 gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 24 ERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred CcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 99999999999888754 5779999999999999999873
No 213
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.28 E-value=0.03 Score=48.66 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998876
No 214
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.28 E-value=0.031 Score=52.45 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCH--HHHHHHHHHHhCCCCCCCccCCCCHHH-HHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNF--RMILDDIIKSVMPPSRVSVVIGEDYQL-KKSI 203 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~-~~~~ 203 (422)
..+++.++|.+|+||||++..++.. ....-..+..++... +.. .+-+....+..+.+... .....+... ....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~-~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIK-QKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEe-CCCCCCHHHHHHHH
Confidence 4789999999999999998888763 322212345555442 222 23334444544432110 000123322 2233
Q ss_pred HHHhcCCceEEEEEeCCC
Q 042081 204 LRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 204 l~~~L~~kr~LlVLDdv~ 221 (422)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444444577888653
No 215
>PTZ00301 uridine kinase; Provisional
Probab=96.27 E-value=0.0047 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 216
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.26 E-value=0.042 Score=47.81 Aligned_cols=123 Identities=14% Similarity=0.049 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC--CCCHHHHHHHHHHHhCCCCCCCccC------CCCHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI--AYNFRMILDDIIKSVMPPSRVSVVI------GEDYQL 199 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~~~------~~~~~~ 199 (422)
-.+++|+|..|.|||||.+.+..-. ....+.+++.-.. ..+.......+. .+... ..-.+. -..-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~-~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQD-DELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCC-CccccCcHHHHCcCHHHH
Confidence 4589999999999999999998732 2223333332110 111111111110 00000 000000 011222
Q ss_pred HHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHhh
Q 042081 200 KKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 200 ~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va~ 255 (422)
..-.+...|..++-+++||+--.. +...-..+...+.. ...|..||++|.+.....
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 333455556666778999976421 33333444443331 123677889998877654
No 217
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.02 Score=49.78 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=62.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCC-CCCCCccCC---------CCH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMP-PSRVSVVIG---------EDY 197 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~-~~~~~~~~~---------~~~ 197 (422)
-.+++|+|..|.|||||.+.+.... ....+.+++.-..-.+.. ..+-..++- ......... ..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4689999999999999999998732 123344443211000000 011011110 000000000 112
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHhhh
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va~~ 256 (422)
+...-.+...|..++-+++||+--.. +......+...+.. ...|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22333566667778889999986421 33333444444432 1236779999988776554
No 218
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.25 E-value=0.49 Score=46.60 Aligned_cols=70 Identities=21% Similarity=0.109 Sum_probs=41.5
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce-eEEEEeC-CCCCHHHHHHHHHHHhC
Q 042081 114 REELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-HAWVRVS-IAYNFRMILDDIIKSVM 184 (422)
Q Consensus 114 ~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs-~~~~~~~~~~~il~~l~ 184 (422)
.++|++.|-.+ ...+.||-.+|.-|.||||.+-.+.+ .++. ... ..-|+.. ..+.+-+-++.+..+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 45566666531 12478999999999999999988877 3333 222 2223221 22334455566666665
Q ss_pred CC
Q 042081 185 PP 186 (422)
Q Consensus 185 ~~ 186 (422)
.+
T Consensus 156 v~ 157 (451)
T COG0541 156 VP 157 (451)
T ss_pred Cc
Confidence 43
No 219
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.24 E-value=0.078 Score=47.85 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=66.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-C--Ccc-----------eeEEEEeCC----CCCHH---------------H
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--YFD-----------CHAWVRVSI----AYNFR---------------M 174 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~-----------~~~wv~vs~----~~~~~---------------~ 174 (422)
-.+++|+|..|.|||||.+.+....... + .|+ .+.++.-.. ..+.. +
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 116 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ 116 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHH
Confidence 4689999999999999999998642111 1 011 122332111 01111 1
Q ss_pred HHHHHHHHhCCCCC--CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecC
Q 042081 175 ILDDIIKSVMPPSR--VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 175 ~~~~il~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
....++..++.... .....-..-+...-.+...+-.++-+++||.--.. +......+...+.. ...|..||++|.+
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 117 MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 12233344432211 00001122233344455555566679999975321 34444444444321 1235679999998
Q ss_pred hhHhhhccc
Q 042081 251 PDFLSSFDL 259 (422)
Q Consensus 251 ~~va~~~~~ 259 (422)
...+..++.
T Consensus 197 ~~~~~~~~~ 205 (214)
T PRK13543 197 AYAAPPVRT 205 (214)
T ss_pred hhhhhhhcc
Confidence 876655443
No 220
>PRK08233 hypothetical protein; Provisional
Probab=96.24 E-value=0.0041 Score=54.40 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 221
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.23 E-value=0.065 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|+.|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999863
No 222
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.059 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++++|..|+||||+...+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 223
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.22 E-value=0.081 Score=47.82 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=66.7
Q ss_pred hhhhhHHHHHHHHhc--CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIE--GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|.+..++.|++--.. .+....-|.++|..|.||++|++++.+ .+...... -|.|++.
T Consensus 64 Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~----------------- 122 (287)
T COG2607 64 GVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE----------------- 122 (287)
T ss_pred CchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-----------------
Confidence 888888888765432 122345678999999999999999998 44443322 2222221
Q ss_pred CCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCC-ChhHHHHHHhhcCCC---CCCcEEEEeecC
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEE-SDDVLDDLEEVLPEN---QNGSRVLMTVTD 250 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~---~~gs~ilvTTR~ 250 (422)
+... ...|.+.|+ .+||.|..||...+ ..+.+..++..|-.+ .+...++..|.+
T Consensus 123 ---------dl~~-Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ---------DLAT-LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ---------HHhh-HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 1111 112233333 57999999999754 556677777777532 233444444444
No 224
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.22 E-value=0.0061 Score=62.10 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=39.6
Q ss_pred CCCCch-hhhhhHHHHHHHHhc----CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 103 FQLDKS-EFESGREELFDLLIE----GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 103 ~~~~~~-Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++.++. |.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 344444 999999999999943 244568999999999999999999987
No 225
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.21 E-value=0.0037 Score=51.08 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 042081 131 VAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~ 150 (422)
|.|.|..|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 226
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.061 Score=46.68 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC--CCCHHHHHHHHHHHhCC-CCCCCccCC-------CCH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI--AYNFRMILDDIIKSVMP-PSRVSVVIG-------EDY 197 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~-~~~~~~~~~-------~~~ 197 (422)
-.+++|+|..|.|||||.+.++.- . ....+.+++.-.. ....... + ..++- ......... ..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCHH
Confidence 468999999999999999999873 2 2233434332110 0111111 1 11110 000000000 111
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhh
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 256 (422)
+...-.+...+..++-+++||.-... +......+...+..-..+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22233455666677789999975421 333334444333322235678899988776654
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.024 Score=56.58 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=64.9
Q ss_pred HHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCC
Q 042081 117 LFDLLIEG-QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGE 195 (422)
Q Consensus 117 l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~ 195 (422)
+++.+... ...+.-+.+.|++|+|||+||..+..+ ..|+.+--++. .++. +.
T Consensus 526 lv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSp------e~mi-----------------G~ 578 (744)
T KOG0741|consen 526 LVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISP------EDMI-----------------GL 578 (744)
T ss_pred HHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeCh------HHcc-----------------Cc
Confidence 44444443 235667778899999999999999873 45764333321 1100 12
Q ss_pred CHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHH------------HHHHhhcC---CCCCCcEEEEeecChhHhhh
Q 042081 196 DYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVL------------DDLEEVLP---ENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 196 ~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~------------~~l~~~l~---~~~~gs~ilvTTR~~~va~~ 256 (422)
++..-...+++. -+..--.||+||+. .--+| ..+.-.|. ..+..--|+-||....+...
T Consensus 579 sEsaKc~~i~k~F~DAYkS~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~ 656 (744)
T KOG0741|consen 579 SESAKCAHIKKIFEDAYKSPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE 656 (744)
T ss_pred cHHHHHHHHHHHHHHhhcCcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH
Confidence 333333334433 34456789999996 44444 22333332 22223345557778888887
Q ss_pred cccC
Q 042081 257 FDLE 260 (422)
Q Consensus 257 ~~~~ 260 (422)
|+-.
T Consensus 657 m~i~ 660 (744)
T KOG0741|consen 657 MGIL 660 (744)
T ss_pred cCHH
Confidence 7654
No 228
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.20 E-value=0.065 Score=48.86 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=68.1
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC---------
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV--------- 189 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--------- 189 (422)
++|..+=+.-.++.|.|.+|.|||||+.++.... .+ .-...+|++.... ..++... +++++.....
T Consensus 11 ~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i 85 (229)
T TIGR03881 11 KLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVI 85 (229)
T ss_pred HhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEE
Confidence 3343443456899999999999999999876521 11 2235678876443 3333322 2222221000
Q ss_pred -----------CccCCCCHHHHHHHHHHhcCC---ceEEEEEeCCCC---CChhHHHH----HHhhcCCCCCCcEEEEee
Q 042081 190 -----------SVVIGEDYQLKKSILRDYLTN---KKYFIVLDDYCE---ESDDVLDD----LEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 190 -----------~~~~~~~~~~~~~~l~~~L~~---kr~LlVLDdv~~---~~~~~~~~----l~~~l~~~~~gs~ilvTT 248 (422)
......+.+++...+++.++. +.-++|+|.+.. .++..-.. +...+ ...|..+|+|+
T Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l--~~~~~tvil~~ 163 (229)
T TIGR03881 86 IDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVL--NRWNFTILLTS 163 (229)
T ss_pred EEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHH--HhCCCEEEEEe
Confidence 000124667777777776653 345889998742 12211112 22222 23478889988
Q ss_pred cC
Q 042081 249 TD 250 (422)
Q Consensus 249 R~ 250 (422)
..
T Consensus 164 ~~ 165 (229)
T TIGR03881 164 QY 165 (229)
T ss_pred cc
Confidence 64
No 229
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.20 E-value=0.062 Score=53.77 Aligned_cols=87 Identities=18% Similarity=0.079 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRD 206 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 206 (422)
.+++.++|++|+||||++..+.........-..+..++.... ....+-+....+.++.+... ..+..++...+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~----~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV----VYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc----cCCHHhHHHHHHH
Confidence 469999999999999998887662110111223455554331 11222333334434433211 1344555555554
Q ss_pred hcCCceEEEEEeCC
Q 042081 207 YLTNKKYFIVLDDY 220 (422)
Q Consensus 207 ~L~~kr~LlVLDdv 220 (422)
. . ..=+|++|..
T Consensus 297 ~-~-~~DlVlIDt~ 308 (424)
T PRK05703 297 L-R-DCDVILIDTA 308 (424)
T ss_pred h-C-CCCEEEEeCC
Confidence 3 2 2457888855
No 230
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.12 Score=53.69 Aligned_cols=133 Identities=13% Similarity=-0.000 Sum_probs=69.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.|.+++..+. -...+.++|..|.||||+|+.+...---...- ...+++.-...+.|......+..
T Consensus 20 Gq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~~~dv~ 91 (559)
T PRK05563 20 GQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGSLMDVI 91 (559)
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCCCCCeE
Confidence 99999999999988754 35567789999999999999887621000000 00111111111111111000000
Q ss_pred C-CccCCCCHHH---HHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeec
Q 042081 189 V-SVVIGEDYQL---KKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVT 249 (422)
Q Consensus 189 ~-~~~~~~~~~~---~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 249 (422)
. ........++ +...+... ..++.-++|+|++..-....++.|...+........+|++|.
T Consensus 92 eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 92 EIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred EeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 0 0000122222 22222211 235666889999875566778888877754444455555443
No 231
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.19 E-value=0.032 Score=51.34 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=69.8
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC--------
Q 042081 118 FDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-------- 189 (422)
Q Consensus 118 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-------- 189 (422)
-++|..+=+.-+++.|.|.+|+|||+||.++.... .+ .=...+|++... ++.++.+.+. +++.+...
T Consensus 11 D~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~-~~-~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~ 85 (237)
T TIGR03877 11 DEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-LQ-MGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFA 85 (237)
T ss_pred HHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH-HH-cCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEE
Confidence 34444444567899999999999999999876521 12 223577887655 4445555432 33221100
Q ss_pred --------------C----ccCCCCHHHHHHHHHHhcCC-ceEEEEEeCCCC---CChh----HHHHHHhhcCCCCCCcE
Q 042081 190 --------------S----VVIGEDYQLKKSILRDYLTN-KKYFIVLDDYCE---ESDD----VLDDLEEVLPENQNGSR 243 (422)
Q Consensus 190 --------------~----~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~---~~~~----~~~~l~~~l~~~~~gs~ 243 (422)
. .....+.+++...+.+.+.. +.-+||+|.+.. .++. ....+...+ ...|..
T Consensus 86 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~l--k~~~~t 163 (237)
T TIGR03877 86 IVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVL--SGLGCT 163 (237)
T ss_pred EEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHH--HhCCCE
Confidence 0 00114666777777776643 344799999752 0111 112222222 244777
Q ss_pred EEEeecC
Q 042081 244 VLMTVTD 250 (422)
Q Consensus 244 ilvTTR~ 250 (422)
+|+|+..
T Consensus 164 ~llt~~~ 170 (237)
T TIGR03877 164 SIFVSQV 170 (237)
T ss_pred EEEEECc
Confidence 8888654
No 232
>PRK06547 hypothetical protein; Provisional
Probab=96.18 E-value=0.0081 Score=52.29 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+...+.. ....+|+|.|.+|+||||+|+.+...
T Consensus 6 ~~~~~~~--~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCG--GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 34889999999999999999999874
No 233
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.022 Score=55.94 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
.....+-|+|..|.|||.|++.+.+ ....+.+....+.++ ......+++..+... -.+.++
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~-------------~~~~Fk 171 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN-------------EMEKFK 171 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh-------------hHHHHH
Confidence 3578999999999999999999999 555555532333332 233334444333221 133444
Q ss_pred HhcCCceEEEEEeCCCCC--C---hhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 206 DYLTNKKYFIVLDDYCEE--S---DDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~~~--~---~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
+.. .-=++++||++.- . .+.+-.+...+.. .|..||+|++.
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr 217 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDR 217 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCC
Confidence 544 3338889998631 1 1222222223322 34489988865
No 234
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.16 E-value=0.0049 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+..+|+|.|.+|+|||||++.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 235
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.083 Score=49.13 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 236
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.15 E-value=0.044 Score=51.78 Aligned_cols=81 Identities=11% Similarity=-0.023 Sum_probs=46.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc-c-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHH
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-D-CHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSI 203 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 203 (422)
..+.+|+|.|..|+||||+|+.+.. .+.... . .+..++...-......+. ..+.......|...+.+.+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~----~~g~~~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLK----ERNLMKKKGFPESYDMHRLVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHH----HcCCccccCCChhccHHHHHHH
Confidence 4578999999999999999987754 222111 1 233444443332222222 2222112223445778888888
Q ss_pred HHHhcCCce
Q 042081 204 LRDYLTNKK 212 (422)
Q Consensus 204 l~~~L~~kr 212 (422)
+.....|+.
T Consensus 134 L~~Lk~g~~ 142 (290)
T TIGR00554 134 LSDLKSGKP 142 (290)
T ss_pred HHHHHCCCC
Confidence 877776653
No 237
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.13 E-value=0.025 Score=60.92 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG-----------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..+++|.+++... -...+-+.++|.+|+|||+||+.+++
T Consensus 182 G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 182 GLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 9999999988876421 12345688999999999999999998
No 238
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.047 Score=49.45 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=71.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCC------------ccC------Ccce--eEEEEeCCCCCH----HHH--------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNH------------VKF------YFDC--HAWVRVSIAYNF----RMI-------- 175 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~------------~~~------~F~~--~~wv~vs~~~~~----~~~-------- 175 (422)
-.+++|+|..|+|||||++.+.--.+ ... .|.. -+|-.-..+.++ .++
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 46899999999999999999864211 000 1221 222222222222 222
Q ss_pred --------HHHHHHHhCCCCC--CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-----ChhHHHHHHhhcCCCC
Q 042081 176 --------LDDIIKSVMPPSR--VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-----SDDVLDDLEEVLPENQ 239 (422)
Q Consensus 176 --------~~~il~~l~~~~~--~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~~~~~~l~~~l~~~~ 239 (422)
..+++.+++.+.. .+.|.. ..-+...-.+.+.|.-++=+||+|..-.. ....|+-+... ...
T Consensus 113 ~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l--~~~ 190 (252)
T COG1124 113 GLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL--KKE 190 (252)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH--HHh
Confidence 2344444444321 112222 23333344577777778889999975310 22333333322 123
Q ss_pred CCcEEEEeecChhHhhhcccC
Q 042081 240 NGSRVLMTVTDPDFLSSFDLE 260 (422)
Q Consensus 240 ~gs~ilvTTR~~~va~~~~~~ 260 (422)
.+-.+|+.|.+-.++..++..
T Consensus 191 ~~lt~l~IsHdl~~v~~~cdR 211 (252)
T COG1124 191 RGLTYLFISHDLALVEHMCDR 211 (252)
T ss_pred cCceEEEEeCcHHHHHHHhhh
Confidence 456789999998888877664
No 239
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.09 E-value=0.0053 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|.+|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 240
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.09 E-value=0.091 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 241
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.08 E-value=0.03 Score=55.88 Aligned_cols=91 Identities=12% Similarity=0.162 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC------CCCccC-CCCHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS------RVSVVI-GEDYQLK 200 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~------~~~~~~-~~~~~~~ 200 (422)
-..++|+|..|+|||||++.+.... .....+++......-++.++....+....... ....+. .......
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4689999999999999999887632 22234455443344455555444444331110 000000 0011112
Q ss_pred HHHHHHhc--CCceEEEEEeCCC
Q 042081 201 KSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 201 ~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
.-.+.+++ +++.+||++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 22334444 4799999999984
No 242
>PTZ00035 Rad51 protein; Provisional
Probab=96.07 E-value=0.069 Score=51.76 Aligned_cols=102 Identities=10% Similarity=0.020 Sum_probs=59.6
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCcc---CCc-ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVK---FYF-DCHAWVRVSIAYNFRMILDDIIKSVMPPSRV----- 189 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~----- 189 (422)
++|..+=+.-.++.|+|..|+|||||+..++-..... ..- ..++|+.....|++.++ .++++.++.....
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNI 187 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhce
Confidence 3444444457899999999999999999887533321 111 24668888777777663 4445555443211
Q ss_pred CccCCCCHHHHHHHHH---Hhc-CCceEEEEEeCCC
Q 042081 190 SVVIGEDYQLKKSILR---DYL-TNKKYFIVLDDYC 221 (422)
Q Consensus 190 ~~~~~~~~~~~~~~l~---~~L-~~kr~LlVLDdv~ 221 (422)
......+.+++...+. ..+ .++--|||+|.+.
T Consensus 188 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 188 AYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred EEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0001133344444332 233 2455699999985
No 243
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.07 E-value=0.1 Score=46.52 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---------------Cc-ceeEEEEeC----CCCCHHH-------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---------------YF-DCHAWVRVS----IAYNFRM------------- 174 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------------~F-~~~~wv~vs----~~~~~~~------------- 174 (422)
-.+++|+|..|.|||||.+.+........ .+ ..+.++.-. ...++.+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~ 106 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAV 106 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchH
Confidence 56899999999999999999976421100 01 112222111 1112221
Q ss_pred HHHHHHHHhCCCCCC-Cc-cCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecC
Q 042081 175 ILDDIIKSVMPPSRV-SV-VIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 175 ~~~~il~~l~~~~~~-~~-~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
-..++++.++..... .. ..-..-+...-.+...+..++-+++||.--.. +...-..+...+.. ...|..||++|.+
T Consensus 107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 107 GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred HHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 122333333322110 00 01122233334455556667779999975421 33333444444432 1246779999998
Q ss_pred hhHhhhcc
Q 042081 251 PDFLSSFD 258 (422)
Q Consensus 251 ~~va~~~~ 258 (422)
......+.
T Consensus 187 ~~~~~~~d 194 (200)
T PRK13540 187 DLPLNKAD 194 (200)
T ss_pred chhccccc
Confidence 87766543
No 244
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.05 E-value=0.11 Score=48.28 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cC--Ccc---------eeEEEEeCCC----CCHH------------HHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KF--YFD---------CHAWVRVSIA----YNFR------------MILDDI 179 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---------~~~wv~vs~~----~~~~------------~~~~~i 179 (422)
-.+++|+|..|+|||||.+.+..-... .+ .|+ .+.++.-... .++. .-..++
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 117 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA 117 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence 468999999999999999999863211 11 011 1223321110 1111 122334
Q ss_pred HHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHh
Q 042081 180 IKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 180 l~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va 254 (422)
++.++..... ..+.. ..-+...-.+...|-..+-+++||.--.. +...-..+...+.. ...|..||++|.+....
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4444432210 11111 22223333445555566778899975321 33333444443332 12366789999887765
Q ss_pred hhc
Q 042081 255 SSF 257 (422)
Q Consensus 255 ~~~ 257 (422)
..+
T Consensus 198 ~~~ 200 (257)
T PRK11247 198 VAM 200 (257)
T ss_pred HHh
Confidence 443
No 245
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.04 E-value=0.016 Score=56.44 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
-..+.|.|..|+||||+...+.. .+..+...+++. +..+... ..... ..+-.... . +.+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e--v--g~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE--V--GLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCc-cceEEccc--c--CCCCcCHHHHHHHh
Confidence 46899999999999999999887 344444455554 2222111 00000 00000000 0 12223456678888
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHh
Q 042081 208 LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 254 (422)
|+..+=.|++|.+. +.+.+....... ..|..|+.|+...+..
T Consensus 192 lr~~pd~i~vgEir--d~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 192 LREDPDVILIGEMR--DLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred hccCCCEEEEeCCC--CHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 88888999999998 777766544432 3466677666665444
No 246
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.033 Score=48.75 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC--CCC--HHHHHHHHHHHhCC--CCCCCccC--------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI--AYN--FRMILDDIIKSVMP--PSRVSVVI-------- 193 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~--~~~~~~~il~~l~~--~~~~~~~~-------- 193 (422)
-.+++|+|..|.|||||++.+.... ....+.+.+.-.. ..+ .... .+.+.- +...-.+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~----~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPL----RRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHH----hhcEEEEecCCccCCCCCHHHhee
Confidence 4689999999999999999998631 2233344332110 000 1111 111110 00000000
Q ss_pred --CCCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhh
Q 042081 194 --GEDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 194 --~~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~ 256 (422)
-..-+...-.+...+..++-+++||.--. -+......+...+.. ...|..||++|.+......
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 01112233345566666778999997532 144444444444432 1125678888888766553
No 247
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.16 Score=50.04 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccC-Cc-ceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKF-YF-DCHAWVRVSIA-YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSI 203 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F-~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 203 (422)
...+|.++|..|+||||.+..+........ .- ..+.-++...- .....-++...+.++.+-. ...+..++...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence 468999999999999999988876322111 11 23444554431 2223335555655554322 12455566555
Q ss_pred HHHhcCCceEEEEEeCCCCC--ChhHHHHHHhhcC
Q 042081 204 LRDYLTNKKYFIVLDDYCEE--SDDVLDDLEEVLP 236 (422)
Q Consensus 204 l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~~l~ 236 (422)
+... .+.-+|++|-.-.. +...+..+...+.
T Consensus 249 L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 5553 34557888877421 2223444444443
No 248
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.01 E-value=0.08 Score=48.16 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|+|||||++.+..-
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 249
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.00 E-value=0.025 Score=54.67 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus 10 G~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 10 GEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 777777777777765433345688999999999999999986
No 250
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.024 Score=57.53 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=62.0
Q ss_pred hhhhhHHHHHHHHhcC---C-------CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHH
Q 042081 109 EFESGREELFDLLIEG---Q-------PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDD 178 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 178 (422)
|.+..+.+|.+++..- + ...+=|.++|++|.|||.||+.+.+. ..=.| +.++.+ +
T Consensus 194 G~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp--------e 258 (802)
T KOG0733|consen 194 GLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP--------E 258 (802)
T ss_pred ChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch--------h
Confidence 9999999998888642 1 23566789999999999999999994 33233 333322 2
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 179 IIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 179 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
|+.... +.+.+.+.....+.-..-++++.+|++.
T Consensus 259 ivSGvS---------GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 259 IVSGVS---------GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred hhcccC---------cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 222222 2456666667777777789999999985
No 251
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.98 E-value=0.084 Score=48.03 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=33.8
Q ss_pred HHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCCC--CCCcEEEEeecChhHhh
Q 042081 201 KSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPEN--QNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 201 ~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTTR~~~va~ 255 (422)
.-.+...|..++-+++||.--. -+......+...+..- ..|..||++|.+.....
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 3445566666778999997532 1444445555544421 23677999998887765
No 252
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.98 E-value=0.088 Score=46.99 Aligned_cols=131 Identities=12% Similarity=0.046 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-C--------------Ccc-eeEEEEeCC----CCCH------------HHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--------------YFD-CHAWVRVSI----AYNF------------RMI 175 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~--------------~F~-~~~wv~vs~----~~~~------------~~~ 175 (422)
-.+++|+|..|.|||||.+.+..-.... + .+. .+.++.-.. ..++ .+-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQ 105 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHH
Confidence 5689999999999999999987532100 0 010 122221000 0111 112
Q ss_pred HHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecCh
Q 042081 176 LDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 176 ~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
..++++.++..... ..+.. ..-+...-.+...+..++=+|+||.--.. +......+...+.. ...|..||++|.+.
T Consensus 106 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 106 VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred HHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 23344444432211 01111 22233334455556666779999975321 44444555544431 12366788888875
Q ss_pred hHhhhcc
Q 042081 252 DFLSSFD 258 (422)
Q Consensus 252 ~va~~~~ 258 (422)
.-...++
T Consensus 186 ~~~~~~~ 192 (201)
T cd03231 186 LGLSEAG 192 (201)
T ss_pred hhhhhcc
Confidence 5444343
No 253
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.97 E-value=0.048 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 254
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.96 E-value=0.097 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 255
>PRK06762 hypothetical protein; Provisional
Probab=95.95 E-value=0.0067 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|+|+.|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 256
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.95 E-value=0.076 Score=49.26 Aligned_cols=130 Identities=13% Similarity=0.117 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cCC--cc---eeEEEEeCCCC------CHH-----------HHHHHHHHHhC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KFY--FD---CHAWVRVSIAY------NFR-----------MILDDIIKSVM 184 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~vs~~~------~~~-----------~~~~~il~~l~ 184 (422)
-.+++|+|..|.|||||++.++.-... .+. ++ .+.++.-...+ +.. +-...+++.++
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 109 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ 109 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcC
Confidence 468999999999999999999863211 110 11 12222111000 111 11233344443
Q ss_pred CCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhhc
Q 042081 185 PPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 185 ~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~~ 257 (422)
..... ..+.. ..-+...-.+...+..++-+++||.--.. +...-..+...+.. ...|..||++|.+...+...
T Consensus 110 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred ChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 32110 01111 22233333455556667789999976421 33333444333321 12256788888887765443
No 257
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.92 E-value=0.032 Score=50.71 Aligned_cols=74 Identities=12% Similarity=-0.040 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCC-c-ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFY-F-DCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
+|+|.|..|+||||||+.+.. .+... . ..+..++...-+.....+... +.-.....|...+.+.+...+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~----~~~~~~g~p~~~d~~~l~~~L~~l 74 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIER----GLMDRKGFPESYDMEALLKFLKDI 74 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHh----hhhhcCCCcccCCHHHHHHHHHHH
Confidence 589999999999999999987 33210 1 123444444333222222221 111001113346666676666666
Q ss_pred cC
Q 042081 208 LT 209 (422)
Q Consensus 208 L~ 209 (422)
..
T Consensus 75 ~~ 76 (220)
T cd02025 75 KS 76 (220)
T ss_pred HC
Confidence 55
No 258
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.92 E-value=0.068 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..|++++|..|+||||++.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 57999999999999999999986
No 259
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.92 E-value=0.0064 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.364 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 260
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.88 E-value=0.05 Score=52.62 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|....+.++.+.+..-...-.-|.|+|..|+||+++|+.+++.
T Consensus 3 G~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 3 GESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4445556666666543333456789999999999999999874
No 261
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.88 E-value=0.091 Score=48.60 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-C--Ccce--eEEEEeC----CCCCHHHHH--------------HHHHHHhC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--YFDC--HAWVRVS----IAYNFRMIL--------------DDIIKSVM 184 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~~--~~wv~vs----~~~~~~~~~--------------~~il~~l~ 184 (422)
-.+++|+|..|+|||||.+.+.....-. + .|+. +.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4689999999999999999998742111 1 1121 2222111 011222222 22333333
Q ss_pred CCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCC--CCCcEEEEeecChhHhhhc
Q 042081 185 PPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPEN--QNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 185 ~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTTR~~~va~~~ 257 (422)
..... ..+.. ..-+...-.+...|..+.-+++||.--.. +...-..+...+..- ..|..||++|.+...+..+
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 22100 01111 22333344466667777889999975421 333334444333321 2367799999997766543
No 262
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.86 E-value=0.029 Score=47.99 Aligned_cols=121 Identities=8% Similarity=0.095 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeE--EEEeCCCCCHHHHHHHHHHHhCC---CCCCCcc-CC-----CCH
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHA--WVRVSIAYNFRMILDDIIKSVMP---PSRVSVV-IG-----EDY 197 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~il~~l~~---~~~~~~~-~~-----~~~ 197 (422)
..|-|++..|.||||+|..+.-.. ....+...+ |+.-........+++.+ ..+.. ....... .. ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 467788888999999998776521 122232222 22222233433443333 00000 0000000 00 111
Q ss_pred HHHHHHHHHhcCC-ceEEEEEeCCCCC---ChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 198 QLKKSILRDYLTN-KKYFIVLDDYCEE---SDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 198 ~~~~~~l~~~L~~-kr~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.+..+..++.+.. +-=|||||.+-.. ..-..+.+...+.....+.-||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223334444444 4559999998411 1122344555454444567899999985
No 263
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.84 E-value=0.17 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|.|||||.+.+..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 264
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.83 E-value=0.016 Score=47.92 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+..++.+.|...-..-.+|.+.|.-|.||||+++.+...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555443223568999999999999999999985
No 265
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.82 E-value=0.076 Score=48.08 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999753
No 266
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.011 Score=54.66 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=36.5
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.++.++++.-.+... +..+--+.++|++|.||||||..+.+.
T Consensus 30 GQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 30 GQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 9988888887777653 446778999999999999999999993
No 267
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.82 E-value=0.045 Score=51.15 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=75.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEE-EEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAW-VRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
|-+..+.-|.+.+... ..+....+|++|.|||+-|..+...---.+.|++++. .++|..-... +.+.=
T Consensus 40 gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K-------- 108 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK-------- 108 (346)
T ss_pred chHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh--------
Confidence 8998899999888873 4889999999999999999888763222456666443 3444332211 00000
Q ss_pred CCCccCCCCHHHHHHHHHHhcC--Cce-EEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 188 RVSVVIGEDYQLKKSILRDYLT--NKK-YFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~L~--~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
..+...+......... .++ =.+|||++..-..+.|..+...+-.....++.|+.+..
T Consensus 109 ------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 109 ------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred ------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 0111221111111111 123 37889999766789999999888765555666554443
No 268
>PHA02244 ATPase-like protein
Probab=95.81 E-value=0.12 Score=50.33 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 110 FESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 110 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.......+..++..+ .-|.|+|.+|+|||+||+.++..
T Consensus 105 ~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 105 FHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHH
Confidence 344455666665543 24677999999999999999983
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.80 E-value=0.041 Score=50.54 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe---------CCCCCHHHH--HHHHHHHhCCCCCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV---------SIAYNFRMI--LDDIIKSVMPPSRV 189 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---------s~~~~~~~~--~~~il~~l~~~~~~ 189 (422)
.+..|.++||+|+||||..|.++.+ +...+....-++. .-+.++.+. .++.+++.+...+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 5678888999999999999999884 3333322222222 233455543 45778877665543
No 270
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.80 E-value=0.14 Score=48.83 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 271
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.80 E-value=0.14 Score=46.54 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 272
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.80 E-value=0.068 Score=52.19 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCCHH-HHHHHHHcCCCccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKT-AFAADTYNNNHVKFYFDCHAWVRVSI-AYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSIL 204 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKT-tLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 204 (422)
+-++|.+||+.|+||| |||+..+.-....++ ..+..++... .....+-++...+-++.+-.. ..+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v----v~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLEV----VYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceEE----ecCHHHHHHHH
Confidence 3789999999999999 667766652211222 2345555432 223444455555555555432 24555555555
Q ss_pred HHhcCCceEEEEEeCCCC--CChhHHHHHHhhcC
Q 042081 205 RDYLTNKKYFIVLDDYCE--ESDDVLDDLEEVLP 236 (422)
Q Consensus 205 ~~~L~~kr~LlVLDdv~~--~~~~~~~~l~~~l~ 236 (422)
... ++. =+|.+|-+-. .+.....++...+.
T Consensus 277 ~~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 277 EAL-RDC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred HHh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 443 222 3455565432 13444455554444
No 273
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.79 E-value=0.15 Score=46.27 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHhhh
Q 042081 201 KSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 201 ~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va~~ 256 (422)
.-.+...|-.++-++++|+--.. +......+...+.. ...|..||++|.+......
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 33566666777889999975321 33333444443331 1236778999988775544
No 274
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.78 E-value=0.048 Score=58.29 Aligned_cols=131 Identities=14% Similarity=0.080 Sum_probs=68.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|....+..+.+.+..-.....-|.|+|..|+|||++|+.+++..... .. ..+.++...- ....+-..++....+...
T Consensus 380 G~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-~~-~~v~i~c~~~-~~~~~~~~lfg~~~~~~~ 456 (686)
T PRK15429 380 GRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-NR-RMVKMNCAAM-PAGLLESDLFGHERGAFT 456 (686)
T ss_pred ecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-CC-CeEEEecccC-ChhHhhhhhcCccccccc
Confidence 77777777777666433335578899999999999999998743211 11 1122222211 111122222211111100
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCC-----------CCcEEEEeecCh
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQ-----------NGSRVLMTVTDP 251 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~~ 251 (422)
+.. ......+. ....=.|+||+|..-..+....+...+..+. .+.+||.||...
T Consensus 457 -----g~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 457 -----GAS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred -----ccc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 000 01111121 1123469999998656666777776664321 245888888654
No 275
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.049 Score=46.47 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=63.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY--NFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
-.+++|+|..|.|||||.+.+... . ....+.+++....-. ...... ..+.-- ++...-+...-.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~-----~qlS~G~~~r~~l~ 92 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEELR----RRIGYV-----PQLSGGQRQRVALA 92 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHHHH----hceEEE-----eeCCHHHHHHHHHH
Confidence 368999999999999999999873 2 234455554321111 111111 111100 00112223334455
Q ss_pred HhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHhhhc
Q 042081 206 DYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va~~~ 257 (422)
..+...+-+++||..-.. +......+...+.. ...+..+|++|.+......+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 566666789999986421 33334444443331 11256789999887776554
No 276
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.76 E-value=0.18 Score=47.16 Aligned_cols=54 Identities=7% Similarity=-0.001 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVM 184 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 184 (422)
-.++.|.|.+|+||||++.++......... ..++|++... +..++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHG-VRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-ceEEEEEccc--CHHHHHHHHHHHHh
Confidence 458889999999999999998774221112 2477877655 34566666655543
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.75 E-value=0.075 Score=48.62 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVM 184 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 184 (422)
.-.++.|.|..|.||||||.++... -.+.. ...++++. .-+..++++.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~--e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVST--QLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeC--CCCHHHHHHHH-HHhC
Confidence 4569999999999999998666552 11222 23455553 33455666665 3344
No 278
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.75 E-value=0.0087 Score=52.63 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+.++|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 279
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.73 E-value=0.16 Score=53.80 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcc
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 258 (422)
+...-.|...|-.++=+|+||.--+. +...-..+...+..-. + .||++|.+...+..++
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~~~~ 220 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIRNMA 220 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHHHhc
Confidence 33444566666677789999975432 3333344444443222 3 6888999987665543
No 280
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.11 Score=48.80 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCC-CCCcEEEEeecChhHhhhc
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPEN-QNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va~~~ 257 (422)
...-.+...|..++-+|+||.--.. +......+...+..- ..|..||++|.+...+..+
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~ 204 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEW 204 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 3444566666777889999986421 344444444444311 2367789999887766443
No 281
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.014 Score=49.27 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
+|.|-|.+|+||||+|+.+.++.-.. . .+...++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------L------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------e------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999843322 1 13446788888877654
No 282
>PRK05439 pantothenate kinase; Provisional
Probab=95.69 E-value=0.08 Score=50.46 Aligned_cols=82 Identities=15% Similarity=-0.009 Sum_probs=46.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHH
Q 042081 125 QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKS 202 (422)
Q Consensus 125 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 202 (422)
....-+|+|.|.+|+||||+|+.+.. ...... ..+.-++...=+-....+.. -+.-.....|..-|.+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~----~~l~~~kg~Pes~D~~~l~~ 156 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE----RGLMKRKGFPESYDMRALLR 156 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh----hhccccCCCcccccHHHHHH
Confidence 34678999999999999999998876 332221 12333443332222222211 11110111233467777887
Q ss_pred HHHHhcCCce
Q 042081 203 ILRDYLTNKK 212 (422)
Q Consensus 203 ~l~~~L~~kr 212 (422)
.|.....|+.
T Consensus 157 ~L~~Lk~G~~ 166 (311)
T PRK05439 157 FLSDVKSGKP 166 (311)
T ss_pred HHHHHHcCCC
Confidence 7777777765
No 283
>PRK03839 putative kinase; Provisional
Probab=95.69 E-value=0.0088 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 284
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.13 Score=53.20 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhc
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~ 257 (422)
+...-.+...|-.++-+|+||.-.+. +...-..+...+.. .|..||++|.+.......
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhh
Confidence 33344455566667789999975432 33333444444432 356789999987765543
No 285
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.68 E-value=0.2 Score=44.61 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 042081 130 VVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~ 149 (422)
+++|+|..|+|||||.+.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999886
No 286
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.68 E-value=0.08 Score=47.22 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC--C-ccC--Ccc--------------eeEEEEeCCCCC--HHHHHHHHHHHhCCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN--H-VKF--YFD--------------CHAWVRVSIAYN--FRMILDDIIKSVMPP 186 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~--~-~~~--~F~--------------~~~wv~vs~~~~--~~~~~~~il~~l~~~ 186 (422)
-.+++|+|..|.|||||.+.+.... . ..+ .|+ ..++. +.+.+. ......+++.....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~~~- 103 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYVNE- 103 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhccc-
Confidence 4699999999999999999998742 1 111 000 00111 111110 00111122211100
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCC-CCCcEEEEeecChhHhhh
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPEN-QNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~va~~ 256 (422)
.-..-+...-.+...+-..+-+++||+--.. +......+...+..- ..|..||++|.+...+..
T Consensus 104 ------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 104 ------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ------cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 0122233344466666677789999986421 344444444444321 236778999988876653
No 287
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.67 E-value=0.022 Score=49.89 Aligned_cols=21 Identities=48% Similarity=0.526 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|.+|+||||||..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 288
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.66 E-value=0.18 Score=47.94 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=67.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce-------------------eEEEEeCC----CCCHHH----------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-------------------HAWVRVSI----AYNFRM---------- 174 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-------------------~~wv~vs~----~~~~~~---------- 174 (422)
-.++++.|..|+|||||.+.+..- ++. ..+ +.++.-.. ..++.+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl--~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL--LKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC--cCC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 469999999999999999999863 211 111 22221111 112222
Q ss_pred --------HHHHHHHHhCCCCCC--CccCCCCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCC-CCCC-
Q 042081 175 --------ILDDIIKSVMPPSRV--SVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPE-NQNG- 241 (422)
Q Consensus 175 --------~~~~il~~l~~~~~~--~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~-~~~g- 241 (422)
...++++.++..... ....-..-....-.+...|-+++=|++||.=-. -++..-..+...+.. ...|
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~ 187 (293)
T COG1131 108 LSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187 (293)
T ss_pred CChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 333455555544311 111112222333345566667788999996421 022222233332221 1223
Q ss_pred cEEEEeecChhHhhhcc
Q 042081 242 SRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 242 s~ilvTTR~~~va~~~~ 258 (422)
..||+||....-+..++
T Consensus 188 ~tvlissH~l~e~~~~~ 204 (293)
T COG1131 188 VTILLSTHILEEAEELC 204 (293)
T ss_pred cEEEEeCCcHHHHHHhC
Confidence 67999999987776653
No 289
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.64 E-value=0.22 Score=47.72 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 290
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.64 E-value=0.038 Score=54.91 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCC--ccCCCC------HH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYN-FRMILDDIIKSVMPPSRVS--VVIGED------YQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~--~~~~~~------~~ 198 (422)
-..++|+|..|+|||||++.+.... ..+..+.+-+++... +.++..+++..-+.....- ...+.. ..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999998632 124555666766543 4455555544322111000 000011 11
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +|+++||++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1222244444 5899999999984
No 291
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.036 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 292
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.64 E-value=0.16 Score=51.76 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE-------E----eCCCCCHHHH------------------HHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV-------R----VSIAYNFRMI------------------LDD 178 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~----vs~~~~~~~~------------------~~~ 178 (422)
-.+++|+|..|+|||||.+.+..-.. ...+.+++ . .....++.+. ...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 46899999999999999999987321 11122222 1 1111122111 122
Q ss_pred HHHHhCCCCC-CCccCCCCH-HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHh
Q 042081 179 IIKSVMPPSR-VSVVIGEDY-QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 179 il~~l~~~~~-~~~~~~~~~-~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va 254 (422)
+++.++.... ...+...+. +...-.|...|...+-+|+||.--.. +......+...+.. ...|..||++|.+...+
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 3333333211 011111222 23333456666677789999975421 34333344433321 13467799999987665
Q ss_pred hhc
Q 042081 255 SSF 257 (422)
Q Consensus 255 ~~~ 257 (422)
..+
T Consensus 207 ~~l 209 (549)
T PRK13545 207 KSF 209 (549)
T ss_pred HHh
Confidence 543
No 293
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.09 Score=47.25 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+++|+|..|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999985
No 294
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.019 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 295
>PRK06217 hypothetical protein; Validated
Probab=95.60 E-value=0.025 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.|.|.|.+|+||||||+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 296
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.59 E-value=0.013 Score=53.40 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 297
>PRK04328 hypothetical protein; Provisional
Probab=95.59 E-value=0.052 Score=50.28 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=68.0
Q ss_pred HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC---------
Q 042081 119 DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV--------- 189 (422)
Q Consensus 119 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--------- 189 (422)
++|..+=+.-+++.|.|.+|.|||+||.++... ..+. =...+|++.... +.++.+ .+++++.+...
T Consensus 14 ~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~i 88 (249)
T PRK04328 14 EILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAI 88 (249)
T ss_pred HHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEE
Confidence 334344345789999999999999999987653 1222 234678876653 333332 33444321100
Q ss_pred -------------C----ccCCCCHHHHHHHHHHhcCC-ceEEEEEeCCCC---CChh----HHHHHHhhcCCCCCCcEE
Q 042081 190 -------------S----VVIGEDYQLKKSILRDYLTN-KKYFIVLDDYCE---ESDD----VLDDLEEVLPENQNGSRV 244 (422)
Q Consensus 190 -------------~----~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~---~~~~----~~~~l~~~l~~~~~gs~i 244 (422)
. .....+.+.+...+.+.+.. +.-++|+|.+.. .+.. ....+...+ ...|+.+
T Consensus 89 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~l--k~~g~t~ 166 (249)
T PRK04328 89 VDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVL--SGLGCTA 166 (249)
T ss_pred EeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHH--HhCCCEE
Confidence 0 00113556666777776654 445799999731 1111 112222222 2457778
Q ss_pred EEeecC
Q 042081 245 LMTVTD 250 (422)
Q Consensus 245 lvTTR~ 250 (422)
|+|+..
T Consensus 167 llt~e~ 172 (249)
T PRK04328 167 IFVSQV 172 (249)
T ss_pred EEEECc
Confidence 888644
No 298
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.17 Score=49.39 Aligned_cols=103 Identities=7% Similarity=0.010 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
..+++.++|+.|+||||++..+... ....-..+.+++...- ....+-++...+.++.+... ..+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~----~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEe----cCCHHHHHHHHH
Confidence 4789999999999999999988763 2111123556665432 23344555555555543211 246666766665
Q ss_pred HhcC-CceEEEEEeCCCC--CChhHHHHHHhhc
Q 042081 206 DYLT-NKKYFIVLDDYCE--ESDDVLDDLEEVL 235 (422)
Q Consensus 206 ~~L~-~kr~LlVLDdv~~--~~~~~~~~l~~~l 235 (422)
..-. +..=+|++|-.-. .+.+....+....
T Consensus 279 ~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 5432 3446788887642 1344445554433
No 299
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.57 E-value=0.021 Score=51.60 Aligned_cols=124 Identities=11% Similarity=0.146 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCC-CCHHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIG-EDYQLKKSILRD 206 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~-~~~~~~~~~l~~ 206 (422)
.+++.|+|..|.|||||.+.+...... . ....|+.... .. ...+.+++..+...... ... .....-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~a~~-~~-~~~~d~i~~~l~~~~si--~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVPADS-AT-IGLVDKIFTRMSSRESV--SSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeEcCC-cE-EeeeeeeeeeeCCccCh--hhccchHHHHHHHHHH
Confidence 488999999999999999988732111 0 0111111110 00 01111222222222110 000 111111222222
Q ss_pred h--cCCceEEEEEeCCCCC-ChhHH----HHHHhhcCCC-CCCcEEEEeecChhHhhhcc
Q 042081 207 Y--LTNKKYFIVLDDYCEE-SDDVL----DDLEEVLPEN-QNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 207 ~--L~~kr~LlVLDdv~~~-~~~~~----~~l~~~l~~~-~~gs~ilvTTR~~~va~~~~ 258 (422)
. +..++.|++||..-.- +..+. ..+...+... ..+..+|+||.+..++....
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 2 2367889999987521 12111 2233333222 23457999999988877653
No 300
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.56 E-value=0.16 Score=47.22 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+.--
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999763
No 301
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.25 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 302
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.54 E-value=0.021 Score=55.11 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..+..++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999994
No 303
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.53 E-value=0.21 Score=45.94 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+.-.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999853
No 304
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.52 E-value=0.027 Score=55.22 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCC
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIG 194 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~ 194 (422)
++-+.|..+-..-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ..++. .-+..++..... .....
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e 144 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAE 144 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEcc
Confidence 333444444334679999999999999999998863 2222235677766543 33332 223445433211 00111
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 195 EDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 195 ~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
.+.+.+.+.+.+ .+.-+||+|.+.
T Consensus 145 ~~le~I~~~i~~---~~~~lVVIDSIq 168 (372)
T cd01121 145 TNLEDILASIEE---LKPDLVIIDSIQ 168 (372)
T ss_pred CcHHHHHHHHHh---cCCcEEEEcchH
Confidence 345555555432 366789999984
No 305
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.52 E-value=0.0092 Score=53.16 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|..|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 306
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.52 E-value=0.23 Score=51.55 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=82.7
Q ss_pred hhhhhHHHHHHHHhc---CCCCceEEEEEcCCCCCHHHHHHHHHcCC------CccCCcceeEEEEeCCCCCHHHHHHHH
Q 042081 109 EFESGREELFDLLIE---GQPQLSVVAILDSSGFDKTAFAADTYNNN------HVKFYFDCHAWVRVSIAYNFRMILDDI 179 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~------~~~~~F~~~~wv~vs~~~~~~~~~~~i 179 (422)
+|+.+..+|-..+.. ++..-+.+=|.|.+|.|||..+..|.+.- .--..|+ .+.++.-.-..+.++...|
T Consensus 400 cRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I 478 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKI 478 (767)
T ss_pred chhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHH
Confidence 999999999998865 22344588899999999999999998731 1122343 2334444445789999999
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHhcC-----CceEEEEEeCC---CCCChhHHHHHHhhcCCCCCCcEEEEee
Q 042081 180 IKSVMPPSRVSVVIGEDYQLKKSILRDYLT-----NKKYFIVLDDY---CEESDDVLDDLEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 180 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv---~~~~~~~~~~l~~~l~~~~~gs~ilvTT 248 (422)
...+.+.... .......|..+.. .+.++|++|++ +..+.+.+..|.. + ...++||++|.+
T Consensus 479 ~~~lsg~~~~-------~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-W-pt~~~sKLvvi~ 546 (767)
T KOG1514|consen 479 WEALSGERVT-------WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-W-PTLKNSKLVVIA 546 (767)
T ss_pred HHhcccCccc-------HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-C-CcCCCCceEEEE
Confidence 9999887542 2233334444443 24678888875 3333444444432 1 234577776654
No 307
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.51 E-value=0.06 Score=55.04 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----
Q 042081 115 EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV----- 189 (422)
Q Consensus 115 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~----- 189 (422)
..+-++|-.+=..-+++.|.|.+|+|||||+.++... ....=...++++..+ +..++...+ +.++.+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCC
Confidence 4455555555456789999999999999999999873 222223456666554 344555553 455432211
Q ss_pred ------CccCCCCHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 042081 190 ------SVVIGEDYQLKKSILRDYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 190 ------~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 221 (422)
..|...+.++....+.+.+.. +.-++|+|.+.
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 012224456777777777754 45689999875
No 308
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.49 E-value=0.042 Score=54.73 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCC-HHHHHHHHHHHhCCCCCC--CccCCCC------H
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYN-FRMILDDIIKSVMPPSRV--SVVIGED------Y 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~--~~~~~~~------~ 197 (422)
.-..++|+|..|+|||||++.+.+... -+..+.+-+++... +.++..+.+..-+..... -...+.. .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 356889999999999999999987432 23455566665543 445555444432211100 0000011 1
Q ss_pred HHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 198 QLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
....-.+.+++ +++.+||++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 12222344444 5899999999984
No 309
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.48 E-value=0.073 Score=55.18 Aligned_cols=43 Identities=16% Similarity=-0.004 Sum_probs=34.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 200 G~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 200 GKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 8888888888877654333456779999999999999999974
No 310
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.47 E-value=0.16 Score=52.16 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcccC
Q 042081 195 EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDLE 260 (422)
Q Consensus 195 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~~ 260 (422)
..-....-.|.+.|-.++=+|+||.=-|+ +.+....+...|.. -+| .|||.|.++.....+++.
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhhh
Confidence 44455666777888888889999964332 33333444444432 235 699999999888877664
No 311
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.47 E-value=0.1 Score=46.71 Aligned_cols=54 Identities=13% Similarity=0.346 Sum_probs=32.6
Q ss_pred HHHHhcCCceEEEEEeCCCCC-ChhHHH-HHHhhcCCC-CC-CcEEEEeecChhHhhh
Q 042081 203 ILRDYLTNKKYFIVLDDYCEE-SDDVLD-DLEEVLPEN-QN-GSRVLMTVTDPDFLSS 256 (422)
Q Consensus 203 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~-~l~~~l~~~-~~-gs~ilvTTR~~~va~~ 256 (422)
.+...+..+.-+++||+.-.. ++.... .+...+... .. |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 455667778889999986421 333334 444444321 12 5668889988776543
No 312
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.22 Score=44.81 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-------------------CCcceeEEEEeCCCC-----CHHHHHHH-----
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-------------------FYFDCHAWVRVSIAY-----NFRMILDD----- 178 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~vs~~~-----~~~~~~~~----- 178 (422)
-.+-+|.|+.|+||+|||..+.-++..+ ++....+++....+. +..+.++.
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~ 109 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNAR 109 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhh
Confidence 4688999999999999999998877431 122222333333222 22333332
Q ss_pred ----------------HHHHhCCCCC---CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcC-
Q 042081 179 ----------------IIKSVMPPSR---VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLP- 236 (422)
Q Consensus 179 ----------------il~~l~~~~~---~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~- 236 (422)
.+..+..... .....+ ..-+.-...+.+.+--++=|.|||.-.. -+.+.+..+...+.
T Consensus 110 ~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~ 189 (251)
T COG0396 110 RGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189 (251)
T ss_pred hccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence 2333322210 000001 2233445556666666777999997751 02233333332222
Q ss_pred CCCCCcEEEEeecChhHhhhcccC
Q 042081 237 ENQNGSRVLMTVTDPDFLSSFDLE 260 (422)
Q Consensus 237 ~~~~gs~ilvTTR~~~va~~~~~~ 260 (422)
-...|+-+||.|..+.++....+.
T Consensus 190 lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 190 LREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HhcCCCeEEEEecHHHHHhhcCCC
Confidence 123477799999999999887654
No 313
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.46 E-value=0.012 Score=51.40 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 314
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.45 E-value=0.014 Score=52.46 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=25.7
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 120 LLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 120 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|+..+.....+|.|+|.+|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3445555688999999999999999999976
No 315
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.45 E-value=0.081 Score=54.29 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC-CccCCcc-----eeEEEEeCC---------------CC-C-HHHHHHHHHHHh
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN-HVKFYFD-----CHAWVRVSI---------------AY-N-FRMILDDIIKSV 183 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~F~-----~~~wv~vs~---------------~~-~-~~~~~~~il~~l 183 (422)
.-..|+|+|..|+|||||.+.+.... ...+... .+.++.-.. .+ + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 34579999999999999999996521 1111110 012221111 00 0 123344444444
Q ss_pred CCCCCCC---ccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhccc
Q 042081 184 MPPSRVS---VVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 184 ~~~~~~~---~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~ 259 (422)
+-..... +..-..-+...-.+...+..+.-+||||.=-|+ +.+..+.+..+|..-. |+ ||+.|.++.......+
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va~ 504 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVAT 504 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhcc
Confidence 4433221 111133344455566667778899999964433 4555555555554322 44 8888999988777664
Q ss_pred C
Q 042081 260 E 260 (422)
Q Consensus 260 ~ 260 (422)
.
T Consensus 505 ~ 505 (530)
T COG0488 505 R 505 (530)
T ss_pred e
Confidence 3
No 316
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.12 Score=51.98 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=34.7
Q ss_pred hhhh---hHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCc
Q 042081 109 EFES---GREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHV 154 (422)
Q Consensus 109 Gr~~---~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 154 (422)
|-|+ ++++|++.|.+. ..=++=|.++|++|.|||-||++|+-...+
T Consensus 308 G~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 308 GVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 6655 466777888764 223567889999999999999999985444
No 317
>PRK04040 adenylate kinase; Provisional
Probab=95.43 E-value=0.014 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 318
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.43 E-value=0.12 Score=55.81 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.|.+.+.- +-...+-+.++|++|.|||+||+.+++.
T Consensus 457 g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 457 GLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred cHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 778887777776542 1123455788999999999999999983
No 319
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.18 Score=47.93 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhhc
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~~ 257 (422)
+...-.|...|..++-+|+||.--.. +...-..+...+.. ...|..||++|.+...+..+
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~ 212 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY 212 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 33344566667778889999986421 33333334333332 12367799999887765543
No 320
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.42 E-value=0.093 Score=48.26 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+-.|+|.+|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999876
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.42 E-value=0.1 Score=49.06 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCC----CCHHHHH
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIG----EDYQLKK 201 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~----~~~~~~~ 201 (422)
.+..+|.|+|.+|+|||||...+.+ ........ +.+ .....+..+ .+.++..+.+.- .+..+ .+...+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~-~VI-~gD~~t~~D--a~rI~~~g~pvv-qi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPC-AVI-EGDQQTVND--AARIRATGTPAI-QVNTGKGCHLDAQMIA 174 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCE-EEE-CCCcCcHHH--HHHHHhcCCcEE-EecCCCCCcCcHHHHH
Confidence 3589999999999999999999988 44433332 222 222122222 222344333211 11111 3444455
Q ss_pred HHHHHhcCCceEEEEEeCCC
Q 042081 202 SILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 202 ~~l~~~L~~kr~LlVLDdv~ 221 (422)
..+..+.....=+||++++-
T Consensus 175 ~Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHHhhcCCcEEEEECCC
Confidence 56666544445678889986
No 322
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.41 E-value=0.2 Score=44.47 Aligned_cols=118 Identities=11% Similarity=0.104 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE---------------EeCCCC---CHHHHHHHHHHHhCCCCCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV---------------RVSIAY---NFRMILDDIIKSVMPPSRV 189 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---------------~vs~~~---~~~~~~~~il~~l~~~~~~ 189 (422)
-.+++|.|..|.|||||.+.+..-.. .....+.+.+ .+.+.+ ....+...+.......
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--- 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence 56899999999999999999987320 0122222221 111111 0011222221100000
Q ss_pred CccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChh
Q 042081 190 SVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPD 252 (422)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~ 252 (422)
.-..-+...-.+...|..++-+++||+--.. +......+...+.. ...|..||++|.+..
T Consensus 111 ---~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 ---GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0112222333455566667779999976421 44444555444432 123677888888864
No 323
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.34 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 324
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.39 E-value=0.14 Score=45.80 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCC---CCHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIG---EDYQLKKSIL 204 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~---~~~~~~~~~l 204 (422)
..++.|.|..|.||||+.+.+....-. . ....+|.... ..-.+...|+..++.......... ....++...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a--~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i- 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-A--QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI- 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-H--HcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHH-
Confidence 478999999999999999888642100 0 1111121110 011222333333333221100000 122222222
Q ss_pred HHhcCCceEEEEEeCCCCC-ChhH----HHHHHhhcCCCCCCcEEEEeecChhHhhhccc
Q 042081 205 RDYLTNKKYFIVLDDYCEE-SDDV----LDDLEEVLPENQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 205 ~~~L~~kr~LlVLDdv~~~-~~~~----~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~ 259 (422)
.. +..++-|++||..-.- ++.+ ...+...+.. .|+.+|++|.+..++..+..
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 22 2356789999987310 2322 1223333332 37889999999998876544
No 325
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.39 E-value=0.28 Score=43.88 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|.|||||.+.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 326
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.05 Score=51.21 Aligned_cols=80 Identities=9% Similarity=0.170 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc--cCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV--KFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
-++|.++|++|.|||+|.+.+++.-.+ .+.+....-+.++. ..++...+.+ . +.-...+-+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE----S------gKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE----S------GKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh----h------hhHHHHHHHHHH
Confidence 478899999999999999999986433 34444444443332 2233322221 1 144556667777
Q ss_pred HhcCCceE--EEEEeCCC
Q 042081 206 DYLTNKKY--FIVLDDYC 221 (422)
Q Consensus 206 ~~L~~kr~--LlVLDdv~ 221 (422)
+.+.++.. .+.+|.|.
T Consensus 243 ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHhCCCcEEEEEeHHHH
Confidence 77776543 34457774
No 327
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.38 E-value=0.093 Score=47.18 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|-++.++.+--...+++ .+-+.|.||+|+||||-+..+++
T Consensus 31 GNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 31 GNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred CCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 88888888776666554 77888999999999998888877
No 328
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.38 E-value=0.015 Score=50.60 Aligned_cols=39 Identities=18% Similarity=-0.027 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-CCcceeEEEEeCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSI 168 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~ 168 (422)
..++.+.|+.|+|||.||+.+.. .+. +.....+-+..+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 56788999999999999999987 333 3333444454443
No 329
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.36 E-value=0.024 Score=51.13 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=50.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCccCC-----C
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPS-------RVSVVIG-----E 195 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~-------~~~~~~~-----~ 195 (422)
.-++|.|.+|+|||+|++.+.++.. -+..+++.+++.. ...++.+++...-.... ....+.. .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5788999999999999999988542 2334777777653 44555555533211110 0000000 0
Q ss_pred CHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 196 DYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 196 ~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
.--...+.++. ++|.+|+++||+-
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhH
Confidence 11122333333 6899999999873
No 330
>PRK08149 ATP synthase SpaL; Validated
Probab=95.36 E-value=0.059 Score=53.61 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCC------CccCC--CCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRV------SVVIG--EDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~------~~~~~--~~~~ 198 (422)
-..++|+|..|+|||||...++..... +..+...+... -+..++..+.+......... ..|.. ....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 568899999999999999999874221 23333444433 34556666666543321110 00000 1111
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ ++|++||++||+-
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchH
Confidence 2223344444 4899999999984
No 331
>PRK00625 shikimate kinase; Provisional
Probab=95.36 E-value=0.013 Score=51.09 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.++||+|+||||+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 332
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.032 Score=57.65 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=43.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHH----HHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLK----KSI 203 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~----~~~ 203 (422)
..-|-|.|..|+|||+||+.+++... +.+.-.+..|+.+.-.. ...+.+ ...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~-----------------------~~~e~iQk~l~~v 486 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDG-----------------------SSLEKIQKFLNNV 486 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccc-----------------------hhHHHHHHHHHHH
Confidence 45688999999999999999998433 23322334444332211 122222 333
Q ss_pred HHHhcCCceEEEEEeCCC
Q 042081 204 LRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 204 l~~~L~~kr~LlVLDdv~ 221 (422)
+.+.+...+-+|||||+.
T Consensus 487 fse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHHHhhCCcEEEEcchh
Confidence 445556788999999985
No 333
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.34 E-value=0.2 Score=48.77 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhhccc
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~~~~ 259 (422)
...-.|...|...+-+|++|.--.. ++..-..+...+.. ...|..||++|.+..++..++.
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICD 209 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 3344566667777889999975421 33333334443332 1236779999999887765443
No 334
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.33 E-value=0.012 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 335
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.32 E-value=0.11 Score=46.88 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 336
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.32 E-value=0.33 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||++.+.--
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999853
No 337
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.32 E-value=0.27 Score=46.62 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEeecChhHhhhc
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~va~~~ 257 (422)
...-.|...|..++-+|+||.--.. +......+...+.. ...|..||++|.+...+..+
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~ 210 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADY 210 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 3344466666667779999976421 34444444444331 12367799999997765443
No 338
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.14 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999874
No 339
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.30 E-value=0.015 Score=50.25 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 340
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.30 E-value=0.045 Score=54.97 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC------CccCC--CCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPSRV------SVVIG--EDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~------~~~~~--~~~~ 198 (422)
-+-++|.|.+|+|||||+.++.+.... .+-+..+++-+++.. .+.++..++...-...... ..|.. ....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 467899999999999999888874332 245677787777654 4456666665432211100 00000 1112
Q ss_pred HHHHHHHHhc---CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL---TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L---~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +++++||++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 2333455555 3799999999993
No 341
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.30 E-value=0.29 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+..-
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 342
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.29 E-value=0.2 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|+|..|+|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 343
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.28 E-value=0.086 Score=49.29 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=64.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|......+.+..+.... -.++.|.|..|+||||++..+.+ .+.. ....+ +++..+.... +.. ..++....
T Consensus 63 g~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~-~~~~i-itiEdp~E~~--~~~-~~q~~v~~- 132 (264)
T cd01129 63 GLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNT-PEKNI-ITVEDPVEYQ--IPG-INQVQVNE- 132 (264)
T ss_pred CCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCC-CCCeE-EEECCCceec--CCC-ceEEEeCC-
Confidence 76555555454444432 45899999999999999998866 2322 11112 2232221100 000 00111100
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
.........++..|+...=.|+++.+. +.+....+..+.. .|..++-|...
T Consensus 133 ------~~~~~~~~~l~~~lR~~PD~i~vgEiR--~~e~a~~~~~aa~---tGh~v~tTlHa 183 (264)
T cd01129 133 ------KAGLTFARGLRAILRQDPDIIMVGEIR--DAETAEIAVQAAL---TGHLVLSTLHT 183 (264)
T ss_pred ------cCCcCHHHHHHHHhccCCCEEEeccCC--CHHHHHHHHHHHH---cCCcEEEEecc
Confidence 111235667777888788899999998 7765554444332 34444444333
No 344
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.28 E-value=0.31 Score=47.41 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+..-
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999863
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.28 Score=52.00 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcc
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 258 (422)
+...-.|...|-.++=+|+||.--+. +...-..+...+... +..||++|.+......++
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~ 213 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIV 213 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhc
Confidence 33444566666677789999975432 333333344444322 235889999987665543
No 346
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.018 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|.+|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999987
No 347
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.26 E-value=0.083 Score=54.88 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRD 206 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 206 (422)
.-+++.++|++|+||||||.-|+.+. .| .++=++.|..-++..+-..|...+....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s------------------- 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS------------------- 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-------------------
Confidence 56799999999999999999998842 22 2455677776666655555544433221
Q ss_pred hcC--CceEEEEEeCCC
Q 042081 207 YLT--NKKYFIVLDDYC 221 (422)
Q Consensus 207 ~L~--~kr~LlVLDdv~ 221 (422)
.|. +++.-||+|.+.
T Consensus 381 ~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEID 397 (877)
T ss_pred ccccCCCcceEEEeccc
Confidence 121 467789999886
No 348
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.24 E-value=0.016 Score=51.22 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCc--------ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------C---
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF--------DCHAWVRVSIAYNFRMILDDIIKSVMPPSRV------S--- 190 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~------~--- 190 (422)
-.+..|.|.+|+||||++..+.........| ..++|++...+ ...+.+.+.......... .
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccc
Confidence 3588899999999999998887642222222 14777776655 333333333222211000 0
Q ss_pred -----c----cCCCCHHHHHHHHHHhcCC--ceEEEEEeCCCC------CChhHHHHHHhhcCC--CCCCcEEEEeec
Q 042081 191 -----V----VIGEDYQLKKSILRDYLTN--KKYFIVLDDYCE------ESDDVLDDLEEVLPE--NQNGSRVLMTVT 249 (422)
Q Consensus 191 -----~----~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~------~~~~~~~~l~~~l~~--~~~gs~ilvTTR 249 (422)
. ............+.+.+.. +.-+||+|++.. ++......+...+.. ...|+.||++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H 187 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHH 187 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEE
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 0 0001134455666666665 466999997642 123333334333321 123566766643
No 349
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.23 E-value=0.016 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++|.|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999988
No 350
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.21 E-value=0.016 Score=51.90 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999983
No 351
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.20 E-value=0.11 Score=52.99 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHHHhc--------CCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE--------GQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.+.+.... +-...+-|.++|++|.|||.+|+.+.+.
T Consensus 232 Gl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 232 GLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 777666665543211 1123567889999999999999999983
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.20 E-value=0.022 Score=53.42 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 115 EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 115 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..+++.+... -+-+.++|..|+|||++++.....
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhcc
Confidence 4566666654 345689999999999999998863
No 353
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.19 E-value=0.12 Score=52.17 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccC
Q 042081 115 EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVI 193 (422)
Q Consensus 115 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~ 193 (422)
..+-++|..+=..-.++.|.|.+|+|||||+.++... ....=..++|++.... ..++... +..++..... ....
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~ 155 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLS 155 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcC
Confidence 3444445444345679999999999999999998763 2111124677765543 3333222 2334322110 0111
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 194 GEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 194 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
..+.+.+...+.+ .+.-+||+|.+.
T Consensus 156 e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 156 ETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred CCCHHHHHHHHHh---cCCcEEEEecch
Confidence 2455555555433 355689999875
No 354
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.18 E-value=0.025 Score=49.69 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV 164 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 164 (422)
.++|.|+|+.|+|||||+..+.. ....+|...++.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceee
Confidence 46899999999999999999998 555667544443
No 355
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.17 E-value=0.077 Score=54.60 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|....+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 191 g~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 191 GQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred ecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 7777777777777654444567889999999999999999974
No 356
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.17 E-value=0.14 Score=47.84 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=72.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCC
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGED 196 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 196 (422)
+..++......-+.+.++|+.|+|||+-++.+++.. +...-+..++.++...++..+......... ..
T Consensus 83 ~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~------~~ 150 (297)
T COG2842 83 IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATD------GT 150 (297)
T ss_pred HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccc------hh
Confidence 444444433334488899999999999999998831 222334667777777776666666555443 45
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhc
Q 042081 197 YQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVL 235 (422)
Q Consensus 197 ~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l 235 (422)
..+....+...+.+..-+|+.|....-....++.+....
T Consensus 151 ~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 151 INDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred HHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 566677777777888889999987644566666666543
No 357
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.51 Score=45.29 Aligned_cols=138 Identities=10% Similarity=0.083 Sum_probs=72.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC---C---------c-cCCcceeEEEEeCCCCCHHHH
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNN---H---------V-KFYFDCHAWVRVSIAYNFRMI 175 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~---------~-~~~F~~~~wv~vs~~~~~~~~ 175 (422)
|.+..++.+...+..+. -.....++|..|+||+++|..+...- . + ...++...|+.-....+-..+
T Consensus 8 Gq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~ 86 (314)
T PRK07399 8 GQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLI 86 (314)
T ss_pred CHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccccc
Confidence 88888888888887653 35788999999999999997775521 0 0 111223344422100000000
Q ss_pred HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhc-----CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 176 LDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYL-----TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 176 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
-...+...+.... .+.....+++. .+.+.+ .+++-++|+|++..-+....+.++..+-.-. .+.+|++|.+
T Consensus 87 ~~~~~~~~~~~~~--~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 87 TASEAEEAGLKRK--APPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred chhhhhhcccccc--ccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 0111111111000 00112333332 233333 3466789999987556677777877775433 3456555544
Q ss_pred h
Q 042081 251 P 251 (422)
Q Consensus 251 ~ 251 (422)
.
T Consensus 163 ~ 163 (314)
T PRK07399 163 P 163 (314)
T ss_pred h
Confidence 3
No 358
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.15 E-value=0.081 Score=49.31 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc--cCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC------CccCC--CC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV--KFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPSRV------SVVIG--ED 196 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~------~~~~~--~~ 196 (422)
-+-++|.|-.|+|||+|+..+.++..+ +.+-+.++++-+++.. +..++..++...=...... ..+.. .-
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 457899999999999999998875431 1234678888888764 4556666665532111110 00000 11
Q ss_pred HHHHHHHHHHhcC---CceEEEEEeCCC
Q 042081 197 YQLKKSILRDYLT---NKKYFIVLDDYC 221 (422)
Q Consensus 197 ~~~~~~~l~~~L~---~kr~LlVLDdv~ 221 (422)
.....-.+.++++ ++++|+++||+-
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1122233555553 689999999985
No 359
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.14 E-value=0.064 Score=51.29 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=54.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-ccCCCCHHHHHHHH
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS-VVIGEDYQLKKSIL 204 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~l 204 (422)
+.-+++-|+|..|+||||||..+.. ..+..-...+|+.....+++. .+..++.+.+.- ..+....++..+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 3467999999999999999999887 443333458899887776653 345555443220 00013456666666
Q ss_pred HHhcCC-ceEEEEEeCCC
Q 042081 205 RDYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 205 ~~~L~~-kr~LlVLDdv~ 221 (422)
...++. ..-++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 666654 45689999885
No 360
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.14 E-value=0.03 Score=51.37 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=37.6
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHH
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILD 177 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 177 (422)
...+|++.|.....+..+|+|.|.+|+||+||.-.+...-+-+.+==.++-|.-|.+++--.++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 45667777776655688999999999999999988776221111111244455556665444443
No 361
>PRK13947 shikimate kinase; Provisional
Probab=95.13 E-value=0.016 Score=50.16 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999988
No 362
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.12 E-value=0.028 Score=57.65 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=26.7
Q ss_pred HHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 118 FDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 118 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++.|........+|+|.|..|+||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 344444444688999999999999999999986
No 363
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.12 E-value=0.015 Score=49.11 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999873
No 364
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.12 E-value=0.35 Score=45.48 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 458999999999999999999863
No 365
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.10 E-value=0.3 Score=50.36 Aligned_cols=129 Identities=11% Similarity=0.015 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cC--Ccc---------------eeEEEEeCC----CCCHH------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KF--YFD---------------CHAWVRVSI----AYNFR------------ 173 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---------------~~~wv~vs~----~~~~~------------ 173 (422)
-.+++|+|..|+|||||.+.+..-..- .+ .|+ .+.++.-.. ..++.
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 116 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQA 116 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchH
Confidence 468999999999999999999753110 00 011 122332110 01111
Q ss_pred --HHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEEEe
Q 042081 174 --MILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVLMT 247 (422)
Q Consensus 174 --~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvT 247 (422)
+-..+++..++..... ..+.. ..-+...-.|...|...+-+|+||.--.. +...-..+...+.. ...|..||++
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiv 196 (510)
T PRK15439 117 SMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFI 196 (510)
T ss_pred HHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 2233455555543211 11111 22233344556666677789999974321 22222333333221 1236779999
Q ss_pred ecChhHhhh
Q 042081 248 VTDPDFLSS 256 (422)
Q Consensus 248 TR~~~va~~ 256 (422)
|.+...+..
T Consensus 197 tHd~~~~~~ 205 (510)
T PRK15439 197 SHKLPEIRQ 205 (510)
T ss_pred eCCHHHHHH
Confidence 998765544
No 366
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.09 E-value=0.016 Score=48.61 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|.|.|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 367
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.08 E-value=0.022 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+..+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 368
>PRK15453 phosphoribulokinase; Provisional
Probab=95.08 E-value=0.13 Score=48.06 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=44.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce-eEEEEeCC--CCCHHHHHHHHH--HHhCCCCCCCccCCCCHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSI--AYNFRMILDDII--KSVMPPSRVSVVIGEDYQLKK 201 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~--~~~~~~~~~~il--~~l~~~~~~~~~~~~~~~~~~ 201 (422)
+..+|+|.|.+|+||||+|+.+.. ... +... ...++... .++....-..+. ..-+.+.+.-.|+..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFR-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHh-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 467999999999999999998875 221 1111 23333322 223222222221 111211111114457888888
Q ss_pred HHHHHhcCC
Q 042081 202 SILRDYLTN 210 (422)
Q Consensus 202 ~~l~~~L~~ 210 (422)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888887664
No 369
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.07 E-value=0.16 Score=46.11 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc--cC-----------CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV--KF-----------YFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIG 194 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~-----------~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~ 194 (422)
..++.|.|..|.||||+.+.+.-..-. .. .|+ .++..+....+...-+... .
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~-~i~~~~~~~d~~~~~~StF--------------~ 95 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFD-SVLTRMGASDSIQHGMSTF--------------M 95 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccc-eEEEEecCccccccccchH--------------H
Confidence 568899999999999999888652100 01 111 2222222221111000000 0
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEeCCCC----CChhH-HHHHHhhcCCCCCCcEEEEeecChhHhhhc
Q 042081 195 EDYQLKKSILRDYLTNKKYFIVLDDYCE----ESDDV-LDDLEEVLPENQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 195 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~----~~~~~-~~~l~~~l~~~~~gs~ilvTTR~~~va~~~ 257 (422)
.+..++...++. .+++-|++||..-. .+... -..+...+... .++.+|++|.+..++...
T Consensus 96 ~e~~~~~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 96 VELSETSHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 223333333332 24689999998631 01111 12334444332 478999999998887644
No 370
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.07 E-value=0.081 Score=49.28 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCCCHHHHH-HHHHcCCCccCCccee-EEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCccCC---
Q 042081 128 LSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDCH-AWVRVSIAY-NFRMILDDIIKSVMPPS-------RVSVVIG--- 194 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~il~~l~~~~-------~~~~~~~--- 194 (422)
-+-++|.|..|+|||+|| ..+.+. . .-+.+ +++.+++.. ...++..++...-.... ....+..
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457899999999999996 666652 1 22343 666666654 34556655554321110 0000000
Q ss_pred --CCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHh
Q 042081 195 --EDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEE 233 (422)
Q Consensus 195 --~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~ 233 (422)
...-.+.+.++. +++.+||++||+-. -...+.++..
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~DslTr-~A~A~rEisl 182 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDLSK-QAVAYRQMSL 182 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcChHH-HHHHHHHHHH
Confidence 001222333333 47999999999852 2334444443
No 371
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.06 E-value=0.052 Score=53.91 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCC---CccCCCC-----HH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI-AYNFRMILDDIIKSVMPPSRV---SVVIGED-----YQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~-----~~ 198 (422)
-..++|.|..|+|||||.+.+..... . +....+.+.+ .-...++..+.+..-+..... ...+... ..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999998887322 1 2222233333 334445555544432211110 0000001 11
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +++.+||++||+-
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222345555 5789999999984
No 372
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.05 E-value=0.021 Score=47.75 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 373
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.05 E-value=0.092 Score=52.49 Aligned_cols=92 Identities=9% Similarity=0.069 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CccCC--CCHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV------SVVIG--EDYQ 198 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~------~~~~~--~~~~ 198 (422)
.-..++|.|..|+|||||.+.+....... ..+++..-.......++...+...-...... ..|.. .-..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999998743221 1334333333344455555554332111100 00000 0111
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +++.+||++||+-
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 2222344444 4789999999984
No 374
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.05 E-value=0.019 Score=50.08 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 375
>PRK13409 putative ATPase RIL; Provisional
Probab=95.04 E-value=0.22 Score=52.17 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=67.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEE----E-EeCCC------CCHHHH-------------HHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAW----V-RVSIA------YNFRMI-------------LDDIIKSV 183 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w----v-~vs~~------~~~~~~-------------~~~il~~l 183 (422)
-.+++|+|..|+|||||++.++....- ..+.++ + .+.+. .++.+. ..++++.+
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p---~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKP---DEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 358999999999999999999863211 111111 1 11221 122222 23334444
Q ss_pred CCCCC-CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhhcc
Q 042081 184 MPPSR-VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 184 ~~~~~-~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~~~ 258 (422)
+.... ...+.. ..-+...-.+...|....-+++||.=-.. +...-..+...+.. ...|..||++|.+...+..++
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS 521 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 33211 011111 33334444566677778889999964321 33333334333331 123667899999877666543
No 376
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.03 E-value=0.024 Score=48.23 Aligned_cols=35 Identities=17% Similarity=-0.116 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV 164 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 164 (422)
..||-|.|.+|+||||||+.+.. ++...-.....+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 46889999999999999999988 444333334444
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.02 E-value=0.12 Score=49.63 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...++.++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999998773
No 378
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.01 E-value=0.022 Score=47.80 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcc-CCcceeEEEEeCC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVK-FYFDCHAWVRVSI 168 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~ 168 (422)
++|.|+|..|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4899999999999999999998 343 4455444554443
No 379
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.00 E-value=0.012 Score=51.96 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 380
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.99 E-value=0.037 Score=51.63 Aligned_cols=44 Identities=27% Similarity=0.183 Sum_probs=36.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC
Q 042081 124 GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA 169 (422)
Q Consensus 124 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 169 (422)
+=+.-+++.|+|.+|+|||+++.++.. ....+...++||+..+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 334578999999999999999999988 55555777999988765
No 381
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.99 E-value=0.53 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-.+++|+|..|.|||||.+.++..
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3569999999999999999999853
No 382
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.98 E-value=0.067 Score=51.64 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
+.+.|+.|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999863
No 383
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.98 E-value=0.44 Score=46.60 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|+|||||.+.+..-
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 384
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.54 Score=45.13 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.2
Q ss_pred CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 210 NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 210 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
+++-++|+|++..-+...-+.++..+-.-..++.+|++|.+.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 456689999987556666677777665545577777777653
No 385
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.98 E-value=0.023 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++|+|..|+|||||+..+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 386
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.96 E-value=0.12 Score=48.98 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcC-CCccCCcceeEEEEeCCCCCH-HHHHHHHHHHhC
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNN-NHVKFYFDCHAWVRVSIAYNF-RMILDDIIKSVM 184 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~~~~~il~~l~ 184 (422)
|-.++..+|-.+|... .+...-+.|+|+.|.|||+|.-.+..+ +++.++| +-|........ +-.++.|.+|+.
T Consensus 28 g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 28 GVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred ehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHHHHH
Confidence 7777777777777642 112445678999999999998888775 2333343 33444444332 234566666665
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhcCC------ceEEEEEeCCCCCChhH----HHHHHhhcC-CCCCCcEEEEeecCh
Q 042081 185 PPSRVSVVIGEDYQLKKSILRDYLTN------KKYFIVLDDYCEESDDV----LDDLEEVLP-ENQNGSRVLMTVTDP 251 (422)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVLDdv~~~~~~~----~~~l~~~l~-~~~~gs~ilvTTR~~ 251 (422)
.+.........+..+....+...|+. -++..|+|...-.-+.. +..+...-. ...+-|-|.+|||-.
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 43222111113333333444444432 35788887664211111 111111111 234567788999974
No 387
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.94 E-value=0.028 Score=52.41 Aligned_cols=67 Identities=19% Similarity=0.082 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHH
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDII 180 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 180 (422)
-.+|+..+.....+..+|+|.|.+|+||+||.-.+-..-.-+.|==.++=|.-|.+++--.++.+=+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 4567777777666789999999999999999987766322222222345555566776555555433
No 388
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.042 Score=45.81 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+-|.|.|-+|+|||||+..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 45578999999999999999986
No 389
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.93 E-value=0.099 Score=52.11 Aligned_cols=91 Identities=11% Similarity=0.160 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC--CccCCCCH------
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPSRV--SVVIGEDY------ 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~--~~~~~~~~------ 197 (422)
.-..++|.|..|+|||||.+.+++... -+..+.+.+++.. ...++....+..-+..... -...+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999999998432 2466777777654 3444444433321111100 00000111
Q ss_pred HHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 198 QLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
....-.+.+++ ++|++||++||+-
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11112244444 5899999999984
No 390
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.92 E-value=0.1 Score=48.36 Aligned_cols=81 Identities=16% Similarity=0.012 Sum_probs=43.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC--CCHHHHHHHHHHHhC--CCCCCCccCCCCHHHHHHHHH
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA--YNFRMILDDIIKSVM--PPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~~~~~l~ 205 (422)
+|+|.|..|+||||+++.+.. .....=.....++...- ++-...-..+..... .+.+--.|+..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876 22111011233332221 222222222222221 111111144578888888888
Q ss_pred HhcCCce
Q 042081 206 DYLTNKK 212 (422)
Q Consensus 206 ~~L~~kr 212 (422)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8887653
No 391
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.21 Score=53.80 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=68.1
Q ss_pred hhhhhHHHHHHHHhcC-----C-CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-----Q-PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKS 182 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-----~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 182 (422)
|-++.+..|.+.+... + .....+.+.|+.|+|||-||+.+.. -+-+..+.-+-+..|. ... +.+-
T Consensus 566 gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-vskl 636 (898)
T KOG1051|consen 566 GQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-VSKL 636 (898)
T ss_pred chHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-hhhc
Confidence 6677777777777643 1 1466778899999999999999887 3322222333333332 222 2232
Q ss_pred hCCCCCCCccCCCCHHHHHHHHHHhcCCceE-EEEEeCCCCCChhHHHHHHhhcC
Q 042081 183 VMPPSRVSVVIGEDYQLKKSILRDYLTNKKY-FIVLDDYCEESDDVLDDLEEVLP 236 (422)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~~~~~~~l~~~l~ 236 (422)
++.+.. ---.+-...|.+.++.++| .|.||||...+++....+...+.
T Consensus 637 igsp~g------yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 637 IGSPPG------YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred cCCCcc------cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 233221 1112234478888888876 56669998777777776666654
No 392
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.92 E-value=0.31 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|.|||||.+.+.--
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999853
No 393
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.91 E-value=0.037 Score=52.99 Aligned_cols=46 Identities=20% Similarity=0.059 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMI 175 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 175 (422)
.+++.+.|.||+||||+|....- .........+-|+.....+..++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDV 47 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhh
Confidence 57899999999999999988554 22222233555555544444433
No 394
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.90 E-value=0.028 Score=51.10 Aligned_cols=125 Identities=12% Similarity=0.007 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRD 206 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 206 (422)
+.+++.|.|..|.||||+.+.+....- .+....+|.... ....+...++..++..... .........-...+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~---la~~g~~vpa~~--~~~~~~~~il~~~~l~d~~-~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVL---MAQIGCFVPCDS--ADIPIVDCILARVGASDSQ-LKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---HHHhCCCcCccc--EEEeccceeEeeeccccch-hcCcChHHHHHHHHHH
Confidence 467999999999999999888753100 001111221111 0011222233333222111 0001122222223333
Q ss_pred hc--CCceEEEEEeCCCCC-ChhHH----HHHHhhcCCCCCCcEEEEeecChhHhhhcc
Q 042081 207 YL--TNKKYFIVLDDYCEE-SDDVL----DDLEEVLPENQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 207 ~L--~~kr~LlVLDdv~~~-~~~~~----~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 258 (422)
.+ ...+-|++||..-.- +..+- ..+...+.. ..|+.+|+||....+...+.
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhh
Confidence 33 356889999988210 21111 112233322 34788999999877765443
No 395
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.90 E-value=0.024 Score=50.71 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999999999883
No 396
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.89 E-value=0.028 Score=61.20 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.++.++++.|.... ..-+.++|.+|+||||+|..+..
T Consensus 191 Gr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 99999999999887754 23445999999999999999987
No 397
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.88 E-value=0.025 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCC
Q 042081 131 VAILDSSGFDKTAFAADTYNNNH 153 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~~~ 153 (422)
|.|+|..|+|||||.+.+...+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999997643
No 398
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.88 E-value=0.08 Score=52.83 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC--Ccc---------eeEEEEeCCCCCHHHHHHHHHHHhC-CCCCC------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF--YFD---------CHAWVRVSIAYNFRMILDDIIKSVM-PPSRV------ 189 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~il~~l~-~~~~~------ 189 (422)
-+-++|.|-+|+|||||+.++.+...... -.| .++++.+++.....+.+.+.+..-+ .....
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 45789999999999999999987543210 012 5677778887666666666665544 11110
Q ss_pred CccCC--CCHHHHHHHHHHhcC---CceEEEEEeCCC
Q 042081 190 SVVIG--EDYQLKKSILRDYLT---NKKYFIVLDDYC 221 (422)
Q Consensus 190 ~~~~~--~~~~~~~~~l~~~L~---~kr~LlVLDdv~ 221 (422)
..|.. .-.....-.+.++++ ++++||++||+-
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 00000 111122233556655 589999999994
No 399
>PRK13949 shikimate kinase; Provisional
Probab=94.87 E-value=0.022 Score=49.39 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-|.|+|+.|+||||+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 400
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.022 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 568999999999999999999983
No 401
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.82 E-value=0.12 Score=55.23 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=61.1
Q ss_pred HHHh-cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-ccCCCC
Q 042081 119 DLLI-EGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS-VVIGED 196 (422)
Q Consensus 119 ~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~ 196 (422)
.+|- .+=+.-+++-|.|.+|+|||||+.+++.. ....=...+|+.....+++ ..+++++.+...- ..+...
T Consensus 50 ~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~ 122 (790)
T PRK09519 50 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDT 122 (790)
T ss_pred HhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCC
Confidence 3443 34345788999999999999999886652 2112234788887777664 3666676543210 111244
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEeCCC
Q 042081 197 YQLKKSILRDYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 197 ~~~~~~~l~~~L~~-kr~LlVLDdv~ 221 (422)
.++....+...++. +.-|||+|.+-
T Consensus 123 ~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 123 GEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 56666667766654 56799999975
No 402
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.81 E-value=0.31 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.++.
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 403
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.80 E-value=0.14 Score=51.68 Aligned_cols=98 Identities=17% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCC
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIG 194 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~ 194 (422)
.+-+.|..+=..-.++.|.|.+|+|||||+.++..... +.. ..++|++.... ..++... ++.++..... .....
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g-~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e 142 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAG-GKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAE 142 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcC-CeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCC
Confidence 33344444433467999999999999999999987422 111 24677765543 3333322 4455442211 01111
Q ss_pred CCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 195 EDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 195 ~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
.+.+++...+.+ .+.-+||+|.+.
T Consensus 143 ~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 143 TNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCHHHHHHHHHh---hCCCEEEEechh
Confidence 445555555433 356689999975
No 404
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.80 E-value=0.21 Score=51.44 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=75.5
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHH-HHHHHHcCCCccCCcceeEEEEeCCC--CCHHHHHHHHHHHhCCCCCC
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTA-FAADTYNNNHVKFYFDCHAWVRVSIA--YNFRMILDDIIKSVMPPSRV 189 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~ 189 (422)
..++|++.+.+ -.||.|+|-.|+|||| |+|.+|.+ .|..---+.+.|+ ..+..+.+.+.+.++.....
T Consensus 360 ~R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 360 CRDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 34556666654 5699999999999996 67777764 2311113333443 34556778888888654332
Q ss_pred Ccc------C----C------CCHHHHHHHHHHhcCCceEEEEEeCCCCC--ChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 190 SVV------I----G------EDYQLKKSILRDYLTNKKYFIVLDDYCEE--SDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 190 ~~~------~----~------~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
... + . .+---+...|....-.|=-.||+|.+.+. +.+.+--|..........-|+||||-..
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 100 0 0 12223333444444445568999988632 2233322222222233468999998764
Q ss_pred h---Hhhhcc
Q 042081 252 D---FLSSFD 258 (422)
Q Consensus 252 ~---va~~~~ 258 (422)
+ .+..++
T Consensus 511 ~a~kf~nfFg 520 (1042)
T KOG0924|consen 511 DAQKFSNFFG 520 (1042)
T ss_pred cHHHHHHHhC
Confidence 3 455555
No 405
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.79 E-value=0.025 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999773
No 406
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.78 E-value=0.14 Score=51.74 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCCHHHHH-HHHHcCCCc-----cCCcceeEEEEeCCCCCHHHHHHHHHHHhCC-CCCC------CccCC
Q 042081 128 LSVVAILDSSGFDKTAFA-ADTYNNNHV-----KFYFDCHAWVRVSIAYNFRMILDDIIKSVMP-PSRV------SVVIG 194 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~-~~~~------~~~~~ 194 (422)
-+-++|.|-.|+|||+|| -.+.+...+ .+.-..++++.+++..+...-+.+.+++-+. .... ..|..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 457889999999999997 556664322 1233567888888876543324444444331 1100 00000
Q ss_pred --CCHHHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 195 --EDYQLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 195 --~~~~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
.-..-..-.+.+++ +++.+|||+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 00011222334444 4799999999995
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.77 E-value=0.041 Score=48.51 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=54.5
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHH-HHHHHHHhCCCCCCCc
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMI-LDDIIKSVMPPSRVSV 191 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~-~~~il~~l~~~~~~~~ 191 (422)
+..+++...... -..+.|+|..|+|||||++.+..- +...- ..+-+ ...... .+ ..... ++..... .
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~~--i~~~~-~~i~i--ed~~E~-~~~~~~~~-~~~~~~~--~ 80 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLAF--IPPDE-RIITI--EDTAEL-QLPHPNWV-RLVTRPG--N 80 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhh--cCCCC-CEEEE--CCcccc-CCCCCCEE-EEEEecC--C
Confidence 344444444443 468999999999999999998862 22111 12222 111000 00 00000 0000000 0
Q ss_pred cCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHh
Q 042081 192 VIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEE 233 (422)
Q Consensus 192 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~ 233 (422)
..........+.++..++..+=.++++.+. +.+.+.-+..
T Consensus 81 ~~~~~~~~~~~~l~~~lR~~pd~i~igEir--~~ea~~~~~a 120 (186)
T cd01130 81 VEGSGEVTMADLLRSALRMRPDRIIVGEVR--GGEALDLLQA 120 (186)
T ss_pred CCCCCccCHHHHHHHHhccCCCEEEEEccC--cHHHHHHHHH
Confidence 000122345566667777777788999998 7777664443
No 408
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.76 E-value=0.019 Score=45.71 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 042081 131 VAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~ 150 (422)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999877
No 409
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.75 E-value=0.27 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|+|..|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999975
No 410
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.75 E-value=0.21 Score=47.65 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=50.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCc-ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
..+.|+|..|+||||+++.+.+ .+.... +.++ +++..... +. +..................+.++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~~E---l~------~~~~~~v~~~~~~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDTRE---LQ------CAAPNVVQLRTSDDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCchh---hc------CCCCCEEEEEecCCCCCHHHHHHHH
Confidence 4567999999999999999987 332221 1222 23332211 10 0000000000001112566778888
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHH
Q 042081 208 LTNKKYFIVLDDYCEESDDVLDDLE 232 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~~~~l~ 232 (422)
|+..+=-||+..+. +.+.|.-+.
T Consensus 201 LR~~pD~iivGEiR--~~ea~~~l~ 223 (299)
T TIGR02782 201 LRLRPDRIIVGEVR--GGEALDLLK 223 (299)
T ss_pred hcCCCCEEEEeccC--CHHHHHHHH
Confidence 88888889999998 777766443
No 411
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.74 E-value=0.086 Score=52.54 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCC---CccCCCCH-----
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRV---SVVIGEDY----- 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~---~~~~~~~~----- 197 (422)
.-..++|+|..|+|||||.+.+.+.. +.+..+++.+++. ..+.+.+.+....=...... ...+..-.
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 35688999999999999999998732 2344555555554 34445555443210000000 00000111
Q ss_pred HHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 198 QLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
....-.+.+++ +++++||++||+-
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 11122344444 4789999999984
No 412
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.74 E-value=0.13 Score=53.76 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCc---ceeEEEEeCCCCCHHHHHHHHHHHhCCCCC-CCccCCCCHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCHAWVRVSIAYNFRMILDDIIKSVMPPSR-VSVVIGEDYQLKKSI 203 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~ 203 (422)
-++..|.|.+|.||||++..+.. .+.... ...+.+.....-....+...+-..+..-.. .... .........
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~--~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~--~~~~~~a~T 242 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA--ALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK--KRIPEEAST 242 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhh--hcCCCchHH
Confidence 46888999999999999988876 222111 134555444443334444433322211100 0000 000001222
Q ss_pred HHHhcCC------------ce---EEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee
Q 042081 204 LRDYLTN------------KK---YFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 204 l~~~L~~------------kr---~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 248 (422)
+.+.|.- .+ -+||+|.+...+......+..++|. ++|+|+--
T Consensus 243 iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~---~~rlIlvG 299 (615)
T PRK10875 243 LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPP---HARVIFLG 299 (615)
T ss_pred HHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhccc---CCEEEEec
Confidence 2333321 11 2899999876677777778887764 56776643
No 413
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.73 E-value=0.17 Score=52.07 Aligned_cols=128 Identities=17% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC-cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCcc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY-FDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVV 192 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~ 192 (422)
+..|-+.|..+=+.-+++.|.|.+|+|||+||.++.. ..... =..++|++... +..++...+.. ++.....-..
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~--~~~~~~ge~~lyis~ee--~~~~i~~~~~~-~g~d~~~~~~ 91 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLV--NGIKRFDEPGVFVTFEE--SPEDIIRNVAS-FGWDLQKLID 91 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCEEEEEccC--CHHHHHHHHHH-cCCCHHHHhh
Q ss_pred CCC-------------------CHHHHHHHHHHhcCC-ceEEEEEeCCCCCC-----------hhHHHHHHhhcCCCCCC
Q 042081 193 IGE-------------------DYQLKKSILRDYLTN-KKYFIVLDDYCEES-----------DDVLDDLEEVLPENQNG 241 (422)
Q Consensus 193 ~~~-------------------~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-----------~~~~~~l~~~l~~~~~g 241 (422)
.+. +.+.+...+.+.+.. +.-.+|+|.+. . ......+...+. ..|
T Consensus 92 ~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls--~l~~~~d~~~~~r~~l~~L~~~Lk--~~g 167 (509)
T PRK09302 92 EGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIE--ALFSGFSNEAVVRRELRRLFAWLK--QKG 167 (509)
T ss_pred CCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHH--HHHhhccCHHHHHHHHHHHHHHHH--hCC
Q ss_pred cEEEEeecC
Q 042081 242 SRVLMTVTD 250 (422)
Q Consensus 242 s~ilvTTR~ 250 (422)
+.+|+|+..
T Consensus 168 ~TvLlt~~~ 176 (509)
T PRK09302 168 VTAVITGER 176 (509)
T ss_pred CEEEEEECC
No 414
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.72 E-value=0.23 Score=53.54 Aligned_cols=103 Identities=9% Similarity=0.058 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHH-hCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKS-VMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
+++.|.|.+|.||||+++.+..- .+.. ...+....... .....+.. .+... .+...+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~--~~~~-g~~V~~~ApTg-----~Aa~~L~~~~g~~a-------~Ti~~~~~~~~~~ 433 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREA--WEAA-GYRVIGAALSG-----KAAEGLQAESGIES-------RTLASLEYAWANG 433 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHH--HHhC-CCeEEEEeCcH-----HHHHHHHhccCCce-------eeHHHHHhhhccC
Confidence 57889999999999999998752 2211 12222222211 11122221 12111 2222221111110
Q ss_pred --cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee
Q 042081 208 --LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 208 --L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 248 (422)
.-.+.-|||+|.+...+...+..|..... ..|++||+.=
T Consensus 434 ~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 434 RDLLSDKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred cccCCCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 01245799999998666666666665332 2478877654
No 415
>PRK14530 adenylate kinase; Provisional
Probab=94.71 E-value=0.025 Score=51.10 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 416
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.69 E-value=0.11 Score=51.89 Aligned_cols=90 Identities=9% Similarity=0.084 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC-------CccCC-CCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPSRV-------SVVIG-EDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~-------~~~~~-~~~~ 198 (422)
-..++|+|..|+|||||++.+.... . .+.++...+.... +..++...+...-...... ..|-. ....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~---~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT---E-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---C-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998632 1 2333334444432 3445555544432221110 00000 0111
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +++++||++||+-
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchh
Confidence 1222344444 5799999999985
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.68 E-value=0.046 Score=49.21 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999988544
No 418
>PRK13975 thymidylate kinase; Provisional
Probab=94.67 E-value=0.029 Score=49.76 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999998
No 419
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.65 E-value=0.078 Score=52.97 Aligned_cols=93 Identities=9% Similarity=0.118 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCC-HHHHHHHHHHHhCCCCCC------CccCC--CCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYN-FRMILDDIIKSVMPPSRV------SVVIG--EDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~------~~~~~--~~~~ 198 (422)
-+-++|.|.+|+|||+|+.++..+.. +.+-+.++++-+++... ..+++.++...-...... ..|.. ....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 46789999999999999999877532 23346788888877653 455666655431111100 00000 1112
Q ss_pred HHHHHHHHhcC---CceEEEEEeCCC
Q 042081 199 LKKSILRDYLT---NKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L~---~kr~LlVLDdv~ 221 (422)
...-.+.++++ ++++||++||+-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChH
Confidence 23334556654 689999999984
No 420
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.64 E-value=0.027 Score=47.68 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 042081 131 VAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~ 150 (422)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 421
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.63 E-value=0.073 Score=53.33 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC------CccCC--CCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPSRV------SVVIG--EDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~------~~~~~--~~~~ 198 (422)
-+-++|.|..|+|||||+.++........ =+.++++-+++.. .+.+++.+++..=...... ..|.. ....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46789999999999999998865322111 1346677776654 4556666666532211100 00000 0111
Q ss_pred HHHHHHHHhc---CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL---TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L---~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +++++||++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 2233456666 6799999999984
No 422
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.63 E-value=0.28 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-..++|+|..|.|||||++.+..-
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999753
No 423
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.62 E-value=0.57 Score=48.85 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|..|+|||||.+.+...
T Consensus 33 Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 424
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.62 E-value=0.11 Score=49.86 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
-..+.|+|..|+|||||++.+... +.... ..+.+.-........ .....-...... .....-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~~l~~~~~~----~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYVHLFYSKGG----QGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEEEEEecCCC----CCcCccCHHHHHHHH
Confidence 468999999999999999988863 22211 122221101111000 000000000000 001122345566677
Q ss_pred cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 208 LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 208 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
|+...=.|++|.+. ..+.++- ...+..+.. -++.|+...+...
T Consensus 215 Lr~~pd~ii~gE~r--~~e~~~~-l~a~~~g~~--~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 215 LRMRPDRIILGELR--GDEAFDF-IRAVNTGHP--GSITTLHAGSPEE 257 (308)
T ss_pred hcCCCCeEEEeccC--CHHHHHH-HHHHhcCCC--eEEEEEeCCCHHH
Confidence 88888889999998 6666654 444333222 2477776655443
No 425
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.60 E-value=0.25 Score=49.90 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=31.1
Q ss_pred hhHHHHHHHHh-----cCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 112 SGREELFDLLI-----EGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 112 ~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-++++..||. ...-+.+++.|.|++|+||||..+.+..
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 34677888887 2333567999999999999999998876
No 426
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.035 Score=47.24 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=32.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
..++.|+|.+|+||||+.+.+-. .. ..+ -.+-..+.-+++...+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~--~l~~~~-----------ivNyG~~Mle~A~k~glve~ 52 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK--ELVKHK-----------IVNYGDLMLEIAKKKGLVEH 52 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH--HHhhce-----------eeeHhHHHHHHHHHhCCccc
Confidence 68999999999999999987766 22 111 01344666677776665543
No 427
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.60 E-value=0.016 Score=47.28 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCcc
Q 042081 131 VAILDSSGFDKTAFAADTYNNNHVKFYFD 159 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 159 (422)
|.|.|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57899999999999999998 5656664
No 428
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.60 E-value=0.067 Score=47.26 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 429
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.59 E-value=0.025 Score=51.57 Aligned_cols=91 Identities=22% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------CccC-
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-----------SVVI- 193 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----------~~~~- 193 (422)
+.-+++.|.|.+|+|||+|+.++... ..++.=..+++++...+ +.++.+.+ +.++.+... ..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENM-KSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHH-HHcCCcHHHHhhcCCEEEEeccccc
Confidence 35679999999999999999987642 11110124677776554 34444443 244321100 0000
Q ss_pred ----CCCHHHHHHHHHHhcCC-ceEEEEEeCC
Q 042081 194 ----GEDYQLKKSILRDYLTN-KKYFIVLDDY 220 (422)
Q Consensus 194 ----~~~~~~~~~~l~~~L~~-kr~LlVLDdv 220 (422)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24677778888777764 4468999986
No 430
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.59 E-value=0.085 Score=53.00 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc--eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC------CccCC--CC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFD--CHAWVRVSIAY-NFRMILDDIIKSVMPPSRV------SVVIG--ED 196 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~------~~~~~--~~ 196 (422)
-+-++|.|-.|+|||||+..+.+.....+.+. .++++.+++.. .+.+++.++...=...... ..|.. .-
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 45789999999999999999988544322221 45666666554 4556666665332211100 00000 11
Q ss_pred HHHHHHHHHHhcC---CceEEEEEeCCC
Q 042081 197 YQLKKSILRDYLT---NKKYFIVLDDYC 221 (422)
Q Consensus 197 ~~~~~~~l~~~L~---~kr~LlVLDdv~ 221 (422)
.....-.+.++++ ++++||++||+-
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 1222333556665 689999999984
No 431
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.027 Score=48.20 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 042081 130 VVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~ 149 (422)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 432
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.58 E-value=0.061 Score=51.82 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...|++.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4456666655445688999999999999999998766
No 433
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.56 E-value=0.13 Score=50.79 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHHhcC------------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc
Q 042081 109 EFESGREELFDLLIEG------------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF 158 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 158 (422)
|.++.+..+...+... ....+-|.++|++|+|||++|+.+.. .+...|
T Consensus 16 GQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 16 GQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred CHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 8888888877666532 11346788999999999999999988 444444
No 434
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.56 E-value=0.51 Score=50.03 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cC--Ccc---eeEEEEeCC-----CCCHHHHH----------------HHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KF--YFD---CHAWVRVSI-----AYNFRMIL----------------DDII 180 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---~~~wv~vs~-----~~~~~~~~----------------~~il 180 (422)
-.+++|+|..|+|||||.+.++....- .+ .|. .+.++.-.. ..++.+.+ ..++
T Consensus 345 Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 424 (635)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYL 424 (635)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHH
Confidence 458999999999999999999874211 11 111 122322111 01222211 1222
Q ss_pred HHhCCCC---CCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhh
Q 042081 181 KSVMPPS---RVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 181 ~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 256 (422)
..++... ......-..-+...-.|...+-.++-+|+||.--+. +....+.+...+... .| .||++|.+...+..
T Consensus 425 ~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vSHd~~~~~~ 502 (635)
T PRK11147 425 QDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QG-TVLLVSHDRQFVDN 502 (635)
T ss_pred HhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHHH
Confidence 2222211 000011122223333445555566779999975432 444445555544432 24 58889998876655
Q ss_pred ccc
Q 042081 257 FDL 259 (422)
Q Consensus 257 ~~~ 259 (422)
++.
T Consensus 503 ~~d 505 (635)
T PRK11147 503 TVT 505 (635)
T ss_pred hcC
Confidence 433
No 435
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.55 Score=45.93 Aligned_cols=130 Identities=8% Similarity=0.034 Sum_probs=66.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-C--Ccc------------eeEEEEeCC----CCCHH---------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--YFD------------CHAWVRVSI----AYNFR--------------- 173 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~------------~~~wv~vs~----~~~~~--------------- 173 (422)
-.+++|+|..|.|||||.+.+.--.... + .|+ .+.+|.-.. ..++.
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~ 109 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKA 109 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHH
Confidence 4589999999999999999998632110 0 011 111221000 01111
Q ss_pred ---HHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEE
Q 042081 174 ---MILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVL 245 (422)
Q Consensus 174 ---~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~il 245 (422)
....++++.++..... ..+.. ..-+...-.|...|..++-+|+||.--.. +...-..+...+.. ...|..||
T Consensus 110 ~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii 189 (356)
T PRK11650 110 EIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSL 189 (356)
T ss_pred HHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1223444444443211 11112 33334445567777788889999975311 22222333333321 12367788
Q ss_pred EeecChhHhhhc
Q 042081 246 MTVTDPDFLSSF 257 (422)
Q Consensus 246 vTTR~~~va~~~ 257 (422)
++|.+...+..+
T Consensus 190 ~vTHd~~ea~~l 201 (356)
T PRK11650 190 YVTHDQVEAMTL 201 (356)
T ss_pred EEeCCHHHHHHh
Confidence 999887655443
No 436
>PRK13948 shikimate kinase; Provisional
Probab=94.55 E-value=0.035 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
....|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999999988
No 437
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.54 E-value=0.024 Score=48.68 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 042081 131 VAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~ 150 (422)
|.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.54 E-value=0.027 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 439
>PRK13409 putative ATPase RIL; Provisional
Probab=94.54 E-value=0.29 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999976
No 440
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.53 E-value=0.23 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 441
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.53 E-value=0.68 Score=39.90 Aligned_cols=90 Identities=14% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHhCCCCCC-Ccc-CCCCHHHHHHHHHHhcCCceEEEEEeC----CCCCChhHHHHHHhhcCCCCCCcE
Q 042081 170 YNFRMILDDIIKSVMPPSRV-SVV-IGEDYQLKKSILRDYLTNKKYFIVLDD----YCEESDDVLDDLEEVLPENQNGSR 243 (422)
Q Consensus 170 ~~~~~~~~~il~~l~~~~~~-~~~-~~~~~~~~~~~l~~~L~~kr~LlVLDd----v~~~~~~~~~~l~~~l~~~~~gs~ 243 (422)
.+.....+..+.+++....- ..| +...-++..-.|.+.+...+-+++-|. ......+...++...+. ...|+.
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~T 199 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTT 199 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCce
Confidence 34566677888888765421 122 225566777788889999888888884 22113333444444443 345888
Q ss_pred EEEeecChhHhhhcccC
Q 042081 244 VLMTVTDPDFLSSFDLE 260 (422)
Q Consensus 244 ilvTTR~~~va~~~~~~ 260 (422)
.++-|.++.+|..|...
T Consensus 200 lVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 200 LVLVTHDPQLAARCDRQ 216 (228)
T ss_pred EEEEeCCHHHHHhhhhe
Confidence 99999999999887653
No 442
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.51 E-value=0.036 Score=49.33 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999883
No 443
>PHA02774 E1; Provisional
Probab=94.50 E-value=0.12 Score=53.04 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+..|..+|. +.++-.-+.|+|++|.|||.+|..+.+
T Consensus 421 l~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 421 LTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 444555553 444556899999999999999999988
No 444
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.49 E-value=0.14 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-..++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999988873
No 445
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.47 E-value=0.038 Score=43.80 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~ 149 (422)
-..++|+|..|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 446
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.46 E-value=0.029 Score=52.82 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999999887765
No 447
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.46 E-value=0.066 Score=54.64 Aligned_cols=100 Identities=17% Similarity=0.077 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-Cccee-EEEEeCCCCCHHHHHHHHHHHhCCC----CCC
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDCH-AWVRVSIAYNFRMILDDIIKSVMPP----SRV 189 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~-~wv~vs~~~~~~~~~~~il~~l~~~----~~~ 189 (422)
.++++|..-. .-.-..|+|.+|+|||||++.|.+ .+.. +=++. +.+-|.+..... .+|-+.+.+. ...
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCC
Confidence 4555555432 245678999999999999999998 3322 22333 344555543322 2233333221 110
Q ss_pred CccC-CCCHHHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 190 SVVI-GEDYQLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 190 ~~~~-~~~~~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
..+. ......+.-.+.+++ .++.+||++|++-
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 0000 011222333344444 5799999999984
No 448
>PRK14527 adenylate kinase; Provisional
Probab=94.45 E-value=0.036 Score=49.06 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...+|.|+|.+|+||||+|+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
No 449
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.45 E-value=0.035 Score=48.36 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|.|+|+.|+||||+++.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999873
No 450
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.43 E-value=0.48 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-..++|+|..|.|||||++.+..-
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999763
No 451
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.43 E-value=0.14 Score=53.45 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=24.6
Q ss_pred EEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee
Q 042081 214 FIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 214 LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 248 (422)
+||+|.+...+...+..+..+++. ++|+|+.=
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al~~---~~rlIlvG 293 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKALPP---NTKLILLG 293 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhcCC---CCEEEEEC
Confidence 899999987777788888887763 67777654
No 452
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.42 E-value=0.049 Score=48.08 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+..+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999873
No 453
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.41 E-value=0.2 Score=48.09 Aligned_cols=90 Identities=10% Similarity=0.139 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCC-------CCccC-CCCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI-AYNFRMILDDIIKSVMPPSR-------VSVVI-GEDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~-------~~~~~-~~~~~ 198 (422)
-..++|+|..|.|||||.+.+..... -+......+.. .-+..++....+..-..... ...+. ..-..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 46789999999999999999987422 12333344443 33455555555443221110 00000 00111
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ ++|.+||++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 2222233333 5899999999984
No 454
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.41 E-value=0.27 Score=43.80 Aligned_cols=22 Identities=18% Similarity=-0.010 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~ 149 (422)
-+++.|+|..|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999987
No 455
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.41 E-value=0.11 Score=51.73 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCC------CccCC--CCH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPSRV------SVVIG--EDY 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~------~~~~~--~~~ 197 (422)
.-..++|+|..|+|||||.+.+.+.... +..+...+++.. ...++..+.+.+-+..... ..|.. ...
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 3568999999999999999988873221 222223344332 3444544444331111000 00000 111
Q ss_pred HHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 198 QLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
....-.+.+++ +++.+||++||+-
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 12223344444 4789999999984
No 456
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.42 Score=50.69 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cCC--cc---eeEEEEeCCC----CC----HH------------HHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KFY--FD---CHAWVRVSIA----YN----FR------------MILDDIIK 181 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~vs~~----~~----~~------------~~~~~il~ 181 (422)
-.+++|+|..|+|||||.+.+.....- .+. |. .+.++ .+. .+ +. .-...++.
T Consensus 338 Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~--~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYF--AQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG 415 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEe--cCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence 469999999999999999999864211 111 11 11222 221 11 11 11223334
Q ss_pred HhCCCCC---CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhc
Q 042081 182 SVMPPSR---VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 182 ~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~ 257 (422)
.++.... .....-..-+...-.|...+..++-+|+||.--+. +...-..+...+..- .| .||++|.+...+..+
T Consensus 416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~ 493 (638)
T PRK10636 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRST 493 (638)
T ss_pred HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHh
Confidence 4433210 01111122233334455566677789999975322 333334444444322 25 588889988776654
Q ss_pred cc
Q 042081 258 DL 259 (422)
Q Consensus 258 ~~ 259 (422)
+.
T Consensus 494 ~d 495 (638)
T PRK10636 494 TD 495 (638)
T ss_pred CC
Confidence 43
No 457
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.40 E-value=0.053 Score=51.74 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++.+........+|+|+|.+|+|||||+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3345555544444688999999999999999998876
No 458
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.38 E-value=0.24 Score=49.19 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHHHhc----------CC--C----CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE----------GQ--P----QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----------~~--~----~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.++.+...+.. .. + ....+.++|++|+|||+||+.+..
T Consensus 81 GQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 81 GQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 999988888766521 11 0 135788999999999999999987
No 459
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.38 E-value=0.63 Score=48.38 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-..++|+|..|.|||||++.+..-
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999763
No 460
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.37 E-value=0.16 Score=50.61 Aligned_cols=91 Identities=9% Similarity=0.097 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCC--------CCCccCCCCH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI-AYNFRMILDDIIKSVMPPS--------RVSVVIGEDY 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~--------~~~~~~~~~~ 197 (422)
.-..++|+|..|+|||||++.+..... .+..+...+.. .-+..++..+.+..-+... +.........
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 357899999999999999999887322 12222222332 2233333334333322111 0000001222
Q ss_pred HHHHHHHHHhc--CCceEEEEEeCCC
Q 042081 198 QLKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
.+....+.+++ +++.+||++||+-
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dslt 255 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLT 255 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchh
Confidence 33334455554 4789999999984
No 461
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.12 Score=50.35 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-Ccc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVV 192 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~ 192 (422)
..++-..|-.+--.-++|.|=|-+|||||||..++.. ++...- .+++|+-.++.. ++ +--+..|+.+... ...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~--Qi-klRA~RL~~~~~~l~l~ 152 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQ--QI-KLRADRLGLPTNNLYLL 152 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHH--HH-HHHHHHhCCCccceEEe
Confidence 4444444444323467999999999999999999988 343333 567776555433 22 2223445433211 111
Q ss_pred CCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 193 IGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 193 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
...+.+++...+.+ .+.-|+|+|.+.
T Consensus 153 aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 12566666665555 678899999985
No 462
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.36 E-value=0.75 Score=47.97 Aligned_cols=130 Identities=17% Similarity=0.087 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cC--Ccc---eeEEEEeCC-----CCCHHHH----------------HHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KF--YFD---CHAWVRVSI-----AYNFRMI----------------LDDII 180 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---~~~wv~vs~-----~~~~~~~----------------~~~il 180 (422)
-.+++|+|..|+|||||.+.++....- .+ .|. .+.++.-.. ..++.+. ...++
T Consensus 350 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 429 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence 358999999999999999999863211 01 111 122221110 0122111 12344
Q ss_pred HHhCCCCC--CCccCCCC-HHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhh
Q 042081 181 KSVMPPSR--VSVVIGED-YQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 181 ~~l~~~~~--~~~~~~~~-~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~ 256 (422)
..++.... ...+...+ -+...-.+...+..++-+++||.--.. +...-..+...+.... | .||++|.+...+..
T Consensus 430 ~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~ 507 (556)
T PRK11819 430 GRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDR 507 (556)
T ss_pred HhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHH
Confidence 44443210 11111222 233333556666677889999975321 3333333444333222 4 48889998776655
Q ss_pred ccc
Q 042081 257 FDL 259 (422)
Q Consensus 257 ~~~ 259 (422)
++.
T Consensus 508 ~~d 510 (556)
T PRK11819 508 IAT 510 (556)
T ss_pred hCC
Confidence 443
No 463
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.35 E-value=0.12 Score=50.75 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHH--HHHHHHHhCCCCCCCc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMI--LDDIIKSVMPPSRVSV 191 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~--~~~il~~l~~~~~~~~ 191 (422)
.+.+++.+... ....+.|.|.||.|||+|.+.+.+. ++..-. .+-++.+....+..+ -..+-+.++.+.....
T Consensus 10 ~~~v~~~~~~~--~~~~~fv~G~~GtGKs~l~~~i~~~--~~~~~~-~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~ 84 (364)
T PF05970_consen 10 FDTVIEAIENE--EGLNFFVTGPAGTGKSFLIKAIIDY--LRSRGK-KVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNE 84 (364)
T ss_pred HHHHHHHHHcc--CCcEEEEEcCCCCChhHHHHHHHHH--hccccc-eEEEecchHHHHHhccCCcchHHhcCccccccc
Confidence 44555555543 3568899999999999999999883 333222 222333333222222 1122222222211100
Q ss_pred cCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHH
Q 042081 192 VIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLE 232 (422)
Q Consensus 192 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~ 232 (422)
.... .......+.+.++... +||+|.+...+...++.+-
T Consensus 85 ~~~~-~~~~~~~~~~~l~~~~-~lIiDEism~~~~~l~~i~ 123 (364)
T PF05970_consen 85 KSQC-KISKNSRLRERLRKAD-VLIIDEISMVSADMLDAID 123 (364)
T ss_pred cccc-cccccchhhhhhhhhe-eeecccccchhHHHHHHHH
Confidence 0001 1112234445555444 7899999765555555543
No 464
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.63 Score=48.23 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cC--Ccce---eEEEEeCC------CCCHHH-------------HHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KF--YFDC---HAWVRVSI------AYNFRM-------------ILDDIIKS 182 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~~---~~wv~vs~------~~~~~~-------------~~~~il~~ 182 (422)
-.+++|+|..|+|||||.+.++.-..- .+ .|+. +.++.-.. ..++.+ ....++..
T Consensus 345 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~ 424 (530)
T PRK15064 345 GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGR 424 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHH
Confidence 458999999999999999999863211 01 1211 22221110 012221 12234444
Q ss_pred hCCCC--CCCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcc
Q 042081 183 VMPPS--RVSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 183 l~~~~--~~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 258 (422)
++... ....+.. ..-+...-.+...+..++-+|+||.--.. +...-..+...+... .+ .||++|.+...+..++
T Consensus 425 ~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~~ 502 (530)
T PRK15064 425 LLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSLA 502 (530)
T ss_pred cCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHhC
Confidence 44311 0111111 22333344456666677889999975321 333333444433322 24 6889999987766544
Q ss_pred c
Q 042081 259 L 259 (422)
Q Consensus 259 ~ 259 (422)
.
T Consensus 503 d 503 (530)
T PRK15064 503 T 503 (530)
T ss_pred C
Confidence 3
No 465
>PRK13946 shikimate kinase; Provisional
Probab=94.33 E-value=0.038 Score=48.63 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.|.++|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999998
No 466
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.32 E-value=0.11 Score=55.02 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+-|.++|.+|.|||++|+.+..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999988
No 467
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.32 E-value=0.13 Score=51.22 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=48.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCccCC-CCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKSVMPPS-------RVSVVIG-EDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~-------~~~~~~~-~~~~ 198 (422)
-..++|+|..|.|||||.+.+..... -+..+.+.+.+.. ...++...+...-.... ....+.. .-..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999998887322 1333444555443 33444444433211110 0000000 0111
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +++++||++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1222334444 5899999999984
No 468
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.31 E-value=1.1 Score=43.47 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=33.2
Q ss_pred CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC-hhHhhh
Q 042081 210 NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD-PDFLSS 256 (422)
Q Consensus 210 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~va~~ 256 (422)
+++-++|+|++..-+....+.++..+-.-..++.+|++|.+ ..+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpT 178 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHH
Confidence 45558888999877888888888888765667767666665 444333
No 469
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.30 E-value=0.033 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|++|+|..|+|||||+..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999988
No 470
>PLN03073 ABC transporter F family; Provisional
Probab=94.30 E-value=0.56 Score=50.33 Aligned_cols=129 Identities=16% Similarity=0.080 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cCC--cc---eeEEEEeCC--CCCH----------------HHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KFY--FD---CHAWVRVSI--AYNF----------------RMILDDIIKSV 183 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~vs~--~~~~----------------~~~~~~il~~l 183 (422)
-.+++|+|..|+|||||.+.+.....- .+. +. .+.++.-.. ..+. .+-...++..+
T Consensus 535 Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~ 614 (718)
T PLN03073 535 DSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 614 (718)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC
Confidence 458999999999999999999863211 110 11 112221100 0011 11223445555
Q ss_pred CCCCC--CCccCCC-CHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcc
Q 042081 184 MPPSR--VSVVIGE-DYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 184 ~~~~~--~~~~~~~-~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 258 (422)
+.... ...+... .-+...-.|...+-.++-+|+||.--+. +...-..+...+... .| .||++|.+...+..++
T Consensus 615 gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~ 691 (718)
T PLN03073 615 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSV 691 (718)
T ss_pred CCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhC
Confidence 44311 1111122 2233333455666677889999975432 333334454444322 24 5888999887766543
No 471
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.28 E-value=0.61 Score=46.59 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCc--cCCC------CHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSV--VIGE------DYQL 199 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~--~~~~------~~~~ 199 (422)
-..++|.|..|+|||||.+.++..... ....+...-.+.....+.+...+..-+.....-. +.+. ....
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 458899999999999999999874321 1223333223345666666665554322111000 0001 1112
Q ss_pred HHHHHHHhc--CCceEEEEEeCCCCCChhHHHHHHhh---cCCCCCCcEEEEeecChhHhhhccc
Q 042081 200 KKSILRDYL--TNKKYFIVLDDYCEESDDVLDDLEEV---LPENQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 200 ~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~~l~~~---l~~~~~gs~ilvTTR~~~va~~~~~ 259 (422)
....+.+++ +++..||++||+-. -.+....+... .|. .|--..+.|....++..++.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr-~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTR-FADARRSVDIAVKELPI--GGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHH-HHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHhcc
Confidence 222343444 47899999999852 22223333332 232 25566676667766665544
No 472
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.87 Score=39.82 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcC-CCCCCcEEEEeecChhHh
Q 042081 196 DYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLP-ENQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 196 ~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~-~~~~gs~ilvTTR~~~va 254 (422)
.-.+..-.+.+.+-.++-|-|||..-.. +.+.-..+...+. ....|.-||.||..+...
T Consensus 133 AGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 133 AGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred hhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 3345555677777788999999976421 2333333333333 345678899999876543
No 473
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.057 Score=46.92 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
-.++.|.|++|+||+||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678899999999999999999853
No 474
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.23 E-value=0.046 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
++++|+++|..|+|||||..++...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999999873
No 475
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=94.23 E-value=0.73 Score=45.80 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-Chh---HHHHHHhhcCCCCCCcEEEEeecChhHhhhccc
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDD---VLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~---~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~ 259 (422)
+...-.|...|..++-+|+||.--.. +.. .+..+...+.. .|..||++|.+.+.+..++.
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~--~g~TIIivsHdl~~~~~~ad 207 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCD 207 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCC
Confidence 33444566667777889999974311 222 23333333332 36679999999877755433
No 476
>PLN02348 phosphoribulokinase
Probab=94.23 E-value=0.058 Score=52.74 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 125 QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 125 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+..-+|+|.|.+|+||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999987
No 477
>PRK06761 hypothetical protein; Provisional
Probab=94.22 E-value=0.085 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.+|.|.|++|+||||+++.++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 478
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.21 E-value=0.81 Score=44.72 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Ccce------------eEEEEeCCCC------CH--------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YFDC------------HAWVRVSIAY------NF-------------- 172 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~------------~~wv~vs~~~------~~-------------- 172 (422)
-.+++|+|..|.|||||.+.+.--..... .|+. +..+ .+.+ ++
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v--~Q~~~lfp~~tv~eNi~~~~~~~~~~ 107 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMG 107 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE--eCCcccCCCCcHHHHHHHHHHhcCCC
Confidence 45899999999999999999986322110 0111 1111 1111 11
Q ss_pred ----HHHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCC--CCCCcE
Q 042081 173 ----RMILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPE--NQNGSR 243 (422)
Q Consensus 173 ----~~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~--~~~gs~ 243 (422)
..-..++++.++..... ..+.. ..-+...-.|...|..++=+++||.--. -+...-..+...+.. ...|..
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~t 187 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 12234455555543211 11212 3334444556677777778899997431 133333334333321 123667
Q ss_pred EEEeecChhHhhhcc
Q 042081 244 VLMTVTDPDFLSSFD 258 (422)
Q Consensus 244 ilvTTR~~~va~~~~ 258 (422)
+|++|.+...+..++
T Consensus 188 vi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 188 TIMVTHDQEEALSMA 202 (353)
T ss_pred EEEEcCCHHHHHHhC
Confidence 888888887665443
No 479
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.21 E-value=0.47 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|+|..|.|||||++.+..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999999975
No 480
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.20 E-value=0.038 Score=47.90 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.|.|..|+|||||.+.++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 481
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.20 E-value=0.14 Score=44.48 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=44.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCC
Q 042081 131 VAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTN 210 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 210 (422)
+.|.|..|+|||++|.++... .....+++.-.+.++. ++...|.+........ ........++...+.+. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAH-WRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhc-C-
Confidence 578999999999999998763 1234667766666654 3444443322222111 01112333444444222 2
Q ss_pred ceEEEEEeCC
Q 042081 211 KKYFIVLDDY 220 (422)
Q Consensus 211 kr~LlVLDdv 220 (422)
+.-.|++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337889986
No 482
>PRK05922 type III secretion system ATPase; Validated
Probab=94.20 E-value=0.19 Score=50.12 Aligned_cols=90 Identities=6% Similarity=0.127 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCc--cCC------CCHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI-AYNFRMILDDIIKSVMPPSRVSV--VIG------EDYQ 198 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~--~~~------~~~~ 198 (422)
-..++|+|..|+|||||.+.+..... -+....+.+++ .....+.+.+...........-. ..+ .-..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999987321 23333333333 23334455444433322211000 000 0111
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCC
Q 042081 199 LKKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
...-.+.+++ +|+++||++||+-
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 2222344454 4799999999984
No 483
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.58 Score=49.18 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHhc---------C-CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHH
Q 042081 109 EFESGREELFDLLIE---------G-QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDD 178 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 178 (422)
|.++.+.+|.+-+.- . -.+.+=|.++|++|.|||-||++|+.. .. .-|++|..+ +++
T Consensus 676 GLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----ELL-- 742 (953)
T KOG0736|consen 676 GLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----ELL-- 742 (953)
T ss_pred CHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH----HHH--
Confidence 999999999987643 1 123556788999999999999999983 22 234555443 111
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 179 IIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 179 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
..-- +.+++.+.+...+.=.-++|.|.||.+.
T Consensus 743 --NMYV---------GqSE~NVR~VFerAR~A~PCVIFFDELD 774 (953)
T KOG0736|consen 743 --NMYV---------GQSEENVREVFERARSAAPCVIFFDELD 774 (953)
T ss_pred --HHHh---------cchHHHHHHHHHHhhccCCeEEEecccc
Confidence 1111 2455666666666666789999999885
No 484
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.18 E-value=0.59 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|+|..|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999974
No 485
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.82 Score=45.11 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Ccc------------eeEEEEeCC----CCCHH---------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YFD------------CHAWVRVSI----AYNFR--------------- 173 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~------------~~~wv~vs~----~~~~~--------------- 173 (422)
-.+++|+|..|.|||||.+.++--..... .|+ .+.++.-.. ..++.
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~ 124 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKA 124 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHH
Confidence 46899999999999999999985321100 011 112221000 00111
Q ss_pred ---HHHHHHHHHhCCCCC-CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCC--CCCCcEEE
Q 042081 174 ---MILDDIIKSVMPPSR-VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPE--NQNGSRVL 245 (422)
Q Consensus 174 ---~~~~~il~~l~~~~~-~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~--~~~gs~il 245 (422)
+-..++++.++.... ...+.. ..-+...-.|...|..++=+|+||.--. -+...-..+...+.. ...|..+|
T Consensus 125 ~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii 204 (377)
T PRK11607 125 EIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204 (377)
T ss_pred HHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 122344554444321 111112 3334445566777777888999997431 133333333322210 12356788
Q ss_pred EeecChhHhhhccc
Q 042081 246 MTVTDPDFLSSFDL 259 (422)
Q Consensus 246 vTTR~~~va~~~~~ 259 (422)
++|.+..-+..++.
T Consensus 205 ~vTHd~~ea~~laD 218 (377)
T PRK11607 205 MVTHDQEEAMTMAG 218 (377)
T ss_pred EEcCCHHHHHHhCC
Confidence 88888876554433
No 486
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.18 E-value=0.038 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999998877765
No 487
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.18 E-value=0.24 Score=51.13 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|....+.++++.+..-...-..|.|+|..|+||+.+|+.++..
T Consensus 208 g~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 208 AVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 7777777777766542222345779999999999999998763
No 488
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.33 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--.|+|..|.|||||.+.+..+
T Consensus 59 ~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred cEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999998754
No 489
>PRK04182 cytidylate kinase; Provisional
Probab=94.18 E-value=0.042 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 490
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.17 E-value=0.59 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|+|..|+|||||++.+..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999975
No 491
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.15 E-value=0.039 Score=52.03 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5788999999999998887765
No 492
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.15 E-value=0.49 Score=49.46 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|+|..|.|||||++.+..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999865
No 493
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=94.15 E-value=0.79 Score=47.74 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE-------EeCCCC-------CHHHHHH----------------HH
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV-------RVSIAY-------NFRMILD----------------DI 179 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~vs~~~-------~~~~~~~----------------~i 179 (422)
+++|+|..|+|||||.+.++. ......+.+++ .+.+.. ++.+.+. .+
T Consensus 350 ~~~l~G~NGsGKSTLl~~l~G---~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 426 (552)
T TIGR03719 350 IVGVIGPNGAGKSTLFRMITG---QEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY 426 (552)
T ss_pred EEEEECCCCCCHHHHHHHHcC---CCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Q ss_pred HHHhCCCC---CCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 180 IKSVMPPS---RVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 180 l~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
+..++... ......-..-+...-.+...|..++-+++||.--.. +...-..+...+..-. |+ ||++|.+...+.
T Consensus 427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~-viivsHd~~~~~ 504 (552)
T TIGR03719 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA-GC-AVVISHDRWFLD 504 (552)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-Ce-EEEEeCCHHHHH
Q ss_pred hccc
Q 042081 256 SFDL 259 (422)
Q Consensus 256 ~~~~ 259 (422)
.++.
T Consensus 505 ~~~d 508 (552)
T TIGR03719 505 RIAT 508 (552)
T ss_pred HhCC
No 494
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.13 E-value=1.2 Score=42.90 Aligned_cols=130 Identities=7% Similarity=-0.032 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--CC-
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR--VS- 190 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~- 190 (422)
-+.|.+.+..+. -...+.+.|+.|+||+++|..+...---..... ...+..-..-+.+...-..+-. .+
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 344555555432 356778999999999999998875210000000 0000000111111100000000 00
Q ss_pred ccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 191 VVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 191 ~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.......+++.+..... ..+++=.+|+|++..-+....+.++..+-.-..++.+|++|.+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 00013344444322221 12556688899987667777888888876655677778777764
No 495
>PLN02200 adenylate kinase family protein
Probab=94.13 E-value=0.048 Score=50.03 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999887
No 496
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.11 E-value=0.64 Score=48.35 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|+|..|.|||||++.+..
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999975
No 497
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.10 E-value=1.3 Score=42.58 Aligned_cols=132 Identities=10% Similarity=0.087 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC-c-ce-----eEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY-F-DC-----HAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F-~~-----~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
.+.+.+.+..+ .-...+-+.|+.|+||+++|..+...---.+. - .| .-++..+..+|... +...
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~--------i~p~ 82 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV--------IKPE 82 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE--------EecC
Confidence 44555555443 24568889999999999999888652100000 0 00 00000000111000 0000
Q ss_pred CCCCccCCCCHHHHHHHHHHhc-----CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh-hHhhhcc
Q 042081 187 SRVSVVIGEDYQLKKSILRDYL-----TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP-DFLSSFD 258 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~va~~~~ 258 (422)
.. ......+++.. +.+.+ .+++=.+|+|++..-+....+.++..+-.-..++.+|++|.+. .+...+.
T Consensus 83 ~~---~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 83 KE---GKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred cC---CCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00 00133444433 23332 2345578889887667777888888776555567777776664 4444333
No 498
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.10 E-value=0.13 Score=50.77 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHHhcC------------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG------------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.++.+..++... +....-|.++|++|+|||+||+.+..
T Consensus 19 GQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 19 GQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 8888888888777541 11246789999999999999999987
No 499
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.08 E-value=0.043 Score=45.44 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEEccCCCccccceeeecc
Confidence 35899999999999999999886
No 500
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.08 E-value=0.053 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 042081 130 VVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.|+++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
Done!