Query 042081
Match_columns 422
No_of_seqs 313 out of 2385
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 03:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-45 6.5E-50 378.4 21.2 275 109-407 132-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-37 4.2E-42 348.7 23.4 274 109-405 128-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.3E-37 7.8E-42 325.9 15.9 255 109-399 132-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 2E-33 6.9E-38 291.8 22.5 269 109-401 128-448 (591)
5 1w5s_A Origin recognition comp 99.4 4.7E-12 1.6E-16 124.8 17.5 140 109-253 26-191 (412)
6 1fnn_A CDC6P, cell division co 99.3 2.1E-09 7.2E-14 104.7 26.4 288 109-403 21-385 (389)
7 2qen_A Walker-type ATPase; unk 99.2 3.8E-10 1.3E-14 108.3 19.3 133 109-253 16-176 (350)
8 2fna_A Conserved hypothetical 99.2 1.8E-09 6.3E-14 103.7 20.0 133 109-253 17-182 (357)
9 2v1u_A Cell division control p 99.1 1.2E-08 4E-13 99.3 24.1 138 109-251 23-177 (387)
10 2qby_B CDC6 homolog 3, cell di 99.1 6.2E-09 2.1E-13 101.4 20.0 135 109-251 24-174 (384)
11 3qfl_A MLA10; coiled-coil, (CC 98.9 5.6E-09 1.9E-13 83.4 7.6 61 13-74 51-111 (115)
12 2qby_A CDC6 homolog 1, cell di 98.8 1E-08 3.4E-13 99.6 8.4 140 109-253 24-175 (386)
13 2chg_A Replication factor C sm 98.7 5.6E-08 1.9E-12 86.4 9.8 114 109-251 21-142 (226)
14 1njg_A DNA polymerase III subu 98.7 1.2E-07 4.3E-12 85.2 11.2 136 109-252 27-167 (250)
15 1sxj_B Activator 1 37 kDa subu 98.4 4.4E-07 1.5E-11 85.8 8.0 120 109-251 25-147 (323)
16 1hqc_A RUVB; extended AAA-ATPa 98.3 1.3E-06 4.5E-11 82.7 9.4 42 109-150 16-60 (324)
17 3te6_A Regulatory protein SIR3 98.3 2.8E-06 9.6E-11 80.1 10.2 108 109-221 24-142 (318)
18 1iqp_A RFCS; clamp loader, ext 98.2 1.3E-06 4.4E-11 82.7 5.4 117 109-251 29-150 (327)
19 1jbk_A CLPB protein; beta barr 98.0 7.9E-06 2.7E-10 70.4 6.8 41 109-151 26-66 (195)
20 2w58_A DNAI, primosome compone 98.0 4.1E-06 1.4E-10 73.6 4.3 120 109-250 33-158 (202)
21 3n70_A Transport activator; si 98.0 2.2E-05 7.5E-10 65.2 8.2 110 109-250 5-115 (145)
22 3ec2_A DNA replication protein 97.9 1.5E-05 5.1E-10 68.7 6.7 122 109-251 18-143 (180)
23 1jr3_A DNA polymerase III subu 97.9 5.3E-05 1.8E-09 73.0 11.0 135 109-251 20-159 (373)
24 2chq_A Replication factor C sm 97.9 9.4E-06 3.2E-10 76.4 4.6 117 109-251 21-142 (319)
25 3co5_A Putative two-component 97.8 1.8E-05 6.3E-10 65.5 4.8 107 109-250 8-115 (143)
26 3h4m_A Proteasome-activating n 97.8 2.6E-05 8.7E-10 72.4 6.2 43 109-151 21-74 (285)
27 3syl_A Protein CBBX; photosynt 97.7 6.2E-05 2.1E-09 70.6 7.9 123 109-251 35-179 (309)
28 3pfi_A Holliday junction ATP-d 97.7 0.00066 2.3E-08 64.4 14.4 42 109-150 33-77 (338)
29 2z4s_A Chromosomal replication 97.6 6.7E-05 2.3E-09 74.3 7.2 116 113-250 116-236 (440)
30 3u61_B DNA polymerase accessor 97.6 0.00013 4.5E-09 68.9 8.9 117 109-252 30-147 (324)
31 3uk6_A RUVB-like 2; hexameric 97.5 0.00095 3.2E-08 64.0 13.1 43 109-151 48-93 (368)
32 1sxj_E Activator 1 40 kDa subu 97.5 0.00035 1.2E-08 66.7 9.8 41 109-150 18-58 (354)
33 1sxj_D Activator 1 41 kDa subu 97.5 0.00011 3.6E-09 70.2 5.9 130 109-251 41-173 (353)
34 1a5t_A Delta prime, HOLB; zinc 97.5 0.00098 3.4E-08 63.3 12.7 133 111-251 8-148 (334)
35 1d2n_A N-ethylmaleimide-sensit 97.5 0.00044 1.5E-08 63.5 9.7 26 126-151 62-87 (272)
36 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00019 6.6E-09 65.4 7.1 42 109-150 10-61 (262)
37 2gno_A DNA polymerase III, gam 97.4 0.00066 2.3E-08 63.6 10.7 119 109-251 1-122 (305)
38 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0014 4.7E-08 61.9 12.9 43 109-151 16-68 (322)
39 3bos_A Putative DNA replicatio 97.4 3.1E-05 1.1E-09 69.4 1.2 53 111-167 37-89 (242)
40 3eie_A Vacuolar protein sortin 97.4 0.00022 7.4E-09 67.5 7.1 42 109-150 22-73 (322)
41 1l8q_A Chromosomal replication 97.4 0.0003 1E-08 66.5 7.9 116 113-250 22-140 (324)
42 2cvh_A DNA repair and recombin 97.4 0.00089 3E-08 59.0 10.4 89 127-221 19-115 (220)
43 2kjq_A DNAA-related protein; s 97.4 7.4E-05 2.5E-09 62.3 2.9 24 128-151 36-59 (149)
44 3cf0_A Transitional endoplasmi 97.3 0.0017 5.7E-08 60.7 11.9 43 109-151 19-72 (301)
45 1sxj_C Activator 1 40 kDa subu 97.3 0.00057 2E-08 65.0 8.3 114 109-251 29-150 (340)
46 2qgz_A Helicase loader, putati 97.3 0.00015 5.1E-09 68.2 3.9 42 109-150 132-174 (308)
47 3pvs_A Replication-associated 97.2 0.00093 3.2E-08 66.1 9.6 40 109-150 30-72 (447)
48 3d8b_A Fidgetin-like protein 1 97.2 0.0004 1.4E-08 66.7 6.5 43 109-151 88-140 (357)
49 2bjv_A PSP operon transcriptio 97.2 0.00079 2.7E-08 61.5 8.1 43 109-151 10-52 (265)
50 4fcw_A Chaperone protein CLPB; 97.2 0.00045 1.5E-08 64.6 6.1 116 109-235 21-143 (311)
51 2qp9_X Vacuolar protein sortin 97.1 0.00088 3E-08 64.2 7.5 42 109-150 55-106 (355)
52 2zan_A Vacuolar protein sortin 97.1 0.0035 1.2E-07 62.0 11.9 43 109-151 138-190 (444)
53 2p65_A Hypothetical protein PF 97.1 0.00033 1.1E-08 59.8 4.0 40 109-150 26-65 (187)
54 1sxj_A Activator 1 95 kDa subu 97.1 0.0015 5.1E-08 65.9 9.2 43 109-151 43-100 (516)
55 3b9p_A CG5977-PA, isoform A; A 97.1 0.0011 3.6E-08 61.7 7.5 43 109-151 25-77 (297)
56 3vfd_A Spastin; ATPase, microt 97.0 0.0011 3.8E-08 64.3 7.8 42 109-150 119-170 (389)
57 1ojl_A Transcriptional regulat 97.0 0.00063 2.2E-08 63.8 5.2 43 109-151 6-48 (304)
58 3hu3_A Transitional endoplasmi 96.9 0.0014 4.7E-08 65.6 7.2 88 109-220 208-306 (489)
59 3t15_A Ribulose bisphosphate c 96.9 0.0015 5E-08 60.9 6.6 24 127-150 35-58 (293)
60 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00097 3.3E-08 62.4 5.2 68 128-221 123-192 (331)
61 3pxg_A Negative regulator of g 96.8 0.0018 6.1E-08 64.5 7.0 40 109-150 184-223 (468)
62 1r6b_X CLPA protein; AAA+, N-t 96.8 0.011 3.9E-07 62.4 13.2 40 109-150 190-229 (758)
63 2ce7_A Cell division protein F 96.6 0.0026 9E-08 63.2 6.9 89 109-221 20-118 (476)
64 1lv7_A FTSH; alpha/beta domain 96.6 0.0051 1.7E-07 55.7 8.2 42 109-150 16-67 (257)
65 3c8u_A Fructokinase; YP_612366 96.6 0.0019 6.6E-08 56.7 5.1 38 113-150 7-44 (208)
66 1n0w_A DNA repair protein RAD5 96.5 0.01 3.5E-07 52.9 9.6 94 127-221 23-129 (243)
67 1rz3_A Hypothetical protein rb 96.5 0.003 1E-07 55.1 5.8 41 110-150 3-44 (201)
68 3hr8_A Protein RECA; alpha and 96.5 0.0053 1.8E-07 58.6 7.9 88 127-221 60-149 (356)
69 2z43_A DNA repair and recombin 96.5 0.0058 2E-07 57.6 8.1 94 127-221 106-213 (324)
70 1v5w_A DMC1, meiotic recombina 96.5 0.016 5.4E-07 55.1 11.1 95 126-221 120-229 (343)
71 2i1q_A DNA repair and recombin 96.4 0.0067 2.3E-07 57.1 8.0 94 127-221 97-214 (322)
72 2b8t_A Thymidine kinase; deoxy 96.4 0.0018 6.2E-08 57.6 3.5 115 128-252 12-127 (223)
73 2cbz_A Multidrug resistance-as 96.4 0.023 7.8E-07 51.0 10.6 23 128-150 31-53 (237)
74 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0049 1.7E-07 54.5 6.2 119 128-251 23-168 (235)
75 3pxi_A Negative regulator of g 96.3 0.0052 1.8E-07 65.0 7.3 40 109-150 184-223 (758)
76 2pjz_A Hypothetical protein ST 96.3 0.032 1.1E-06 50.9 11.5 123 129-257 31-191 (263)
77 3pxi_A Negative regulator of g 96.3 0.0077 2.6E-07 63.7 8.5 117 109-250 495-629 (758)
78 1qvr_A CLPB protein; coiled co 96.3 0.0048 1.6E-07 66.2 6.9 40 109-150 174-213 (854)
79 1sgw_A Putative ABC transporte 96.2 0.016 5.6E-07 51.1 8.6 128 128-257 35-199 (214)
80 1odf_A YGR205W, hypothetical 3 96.2 0.0056 1.9E-07 56.8 5.7 84 125-210 28-117 (290)
81 3upu_A ATP-dependent DNA helic 96.2 0.031 1E-06 55.4 11.4 39 109-150 29-67 (459)
82 4g1u_C Hemin import ATP-bindin 96.2 0.036 1.2E-06 50.6 11.0 23 128-150 37-59 (266)
83 3tui_C Methionine import ATP-b 96.1 0.055 1.9E-06 51.6 12.4 131 128-258 54-231 (366)
84 1vpl_A ABC transporter, ATP-bi 96.1 0.051 1.7E-06 49.3 11.8 130 128-257 41-212 (256)
85 4b4t_K 26S protease regulatory 96.1 0.0057 1.9E-07 59.8 5.7 42 109-150 176-228 (428)
86 4b4t_J 26S protease regulatory 96.1 0.0045 1.6E-07 59.8 4.8 89 109-221 152-251 (405)
87 1cr0_A DNA primase/helicase; R 96.1 0.015 5.2E-07 53.8 8.3 24 128-151 35-58 (296)
88 3io5_A Recombination and repai 96.1 0.03 1E-06 52.2 10.0 85 130-221 30-121 (333)
89 4b4t_L 26S protease subunit RP 96.1 0.0067 2.3E-07 59.4 5.8 42 109-150 185-237 (437)
90 2pze_A Cystic fibrosis transme 96.0 0.17 6E-06 44.8 14.7 55 202-256 139-195 (229)
91 3jvv_A Twitching mobility prot 96.0 0.0023 7.7E-08 61.3 2.3 111 128-255 123-235 (356)
92 4b4t_H 26S protease regulatory 96.0 0.0079 2.7E-07 59.0 6.0 89 109-221 213-312 (467)
93 2zr9_A Protein RECA, recombina 96.0 0.015 5.2E-07 55.4 7.9 88 127-221 60-149 (349)
94 2px0_A Flagellar biosynthesis 96.0 0.018 6E-07 53.6 8.1 87 127-220 104-191 (296)
95 1qvr_A CLPB protein; coiled co 96.0 0.011 3.9E-07 63.3 7.7 131 109-250 562-710 (854)
96 3m6a_A ATP-dependent protease 96.0 0.017 5.8E-07 58.5 8.6 42 109-150 85-130 (543)
97 3lw7_A Adenylate kinase relate 95.9 0.0039 1.3E-07 52.4 3.2 20 129-148 2-21 (179)
98 1xp8_A RECA protein, recombina 95.9 0.018 6.3E-07 55.1 8.2 88 127-221 73-162 (366)
99 1vma_A Cell division protein F 95.9 0.019 6.5E-07 53.6 8.1 91 127-221 103-196 (306)
100 4b4t_M 26S protease regulatory 95.9 0.0062 2.1E-07 59.6 4.8 42 109-150 185-237 (434)
101 1qhx_A CPT, protein (chloramph 95.9 0.0041 1.4E-07 52.8 3.1 22 129-150 4-25 (178)
102 2x8a_A Nuclear valosin-contain 95.9 0.037 1.3E-06 50.7 9.7 42 109-151 14-67 (274)
103 3cf2_A TER ATPase, transitiona 95.9 0.0085 2.9E-07 63.2 5.9 89 109-221 208-307 (806)
104 3dm5_A SRP54, signal recogniti 95.8 0.069 2.4E-06 52.3 11.9 24 127-150 99-122 (443)
105 1ypw_A Transitional endoplasmi 95.8 0.01 3.5E-07 63.0 6.5 42 109-150 208-260 (806)
106 1zp6_A Hypothetical protein AT 95.8 0.006 2E-07 52.4 3.9 24 128-151 9-32 (191)
107 3kb2_A SPBC2 prophage-derived 95.8 0.0049 1.7E-07 51.8 3.1 22 129-150 2-23 (173)
108 1ly1_A Polynucleotide kinase; 95.8 0.0058 2E-07 51.8 3.6 23 128-150 2-24 (181)
109 3lda_A DNA repair protein RAD5 95.7 0.042 1.4E-06 53.2 9.9 94 127-221 177-283 (400)
110 3e70_C DPA, signal recognition 95.7 0.031 1.1E-06 52.7 8.6 24 127-150 128-151 (328)
111 1u94_A RECA protein, recombina 95.7 0.018 6E-07 55.0 6.9 88 127-221 62-151 (356)
112 3bh0_A DNAB-like replicative h 95.7 0.026 9E-07 52.9 8.0 52 127-182 67-118 (315)
113 1gvn_B Zeta; postsegregational 95.6 0.013 4.5E-07 54.2 5.7 42 109-150 11-55 (287)
114 3kl4_A SRP54, signal recogniti 95.6 0.036 1.2E-06 54.2 8.9 24 127-150 96-119 (433)
115 3vaa_A Shikimate kinase, SK; s 95.6 0.0067 2.3E-07 52.7 3.4 23 128-150 25-47 (199)
116 1kgd_A CASK, peripheral plasma 95.6 0.0065 2.2E-07 51.9 3.2 23 128-150 5-27 (180)
117 2dhr_A FTSH; AAA+ protein, hex 95.6 0.04 1.4E-06 55.0 9.3 43 109-151 35-87 (499)
118 1kag_A SKI, shikimate kinase I 95.5 0.0057 2E-07 51.6 2.6 22 129-150 5-26 (173)
119 3uie_A Adenylyl-sulfate kinase 95.5 0.0084 2.9E-07 52.1 3.7 24 127-150 24-47 (200)
120 1in4_A RUVB, holliday junction 95.5 0.0082 2.8E-07 56.8 3.8 42 109-150 29-73 (334)
121 2rhm_A Putative kinase; P-loop 95.5 0.0091 3.1E-07 51.2 3.7 24 127-150 4-27 (193)
122 2p5t_B PEZT; postsegregational 95.4 0.014 4.7E-07 52.9 4.9 42 109-150 10-54 (253)
123 3trf_A Shikimate kinase, SK; a 95.4 0.0079 2.7E-07 51.4 3.1 23 128-150 5-27 (185)
124 1nks_A Adenylate kinase; therm 95.4 0.0091 3.1E-07 51.1 3.4 22 129-150 2-23 (194)
125 4b4t_I 26S protease regulatory 95.4 0.013 4.4E-07 57.0 4.7 42 109-150 186-238 (437)
126 1pzn_A RAD51, DNA repair and r 95.4 0.056 1.9E-06 51.4 9.1 94 127-221 130-241 (349)
127 1r6b_X CLPA protein; AAA+, N-t 95.4 0.014 4.8E-07 61.6 5.5 42 109-150 462-510 (758)
128 3tr0_A Guanylate kinase, GMP k 95.4 0.0088 3E-07 51.9 3.3 23 128-150 7-29 (205)
129 1knq_A Gluconate kinase; ALFA/ 95.3 0.0097 3.3E-07 50.3 3.4 23 128-150 8-30 (175)
130 1g5t_A COB(I)alamin adenosyltr 95.3 0.014 4.7E-07 50.6 4.3 117 129-251 29-163 (196)
131 1ofh_A ATP-dependent HSL prote 95.3 0.0084 2.9E-07 55.6 3.2 42 109-150 19-72 (310)
132 1fx0_B ATP synthase beta chain 95.3 0.04 1.4E-06 54.4 8.1 103 117-221 155-276 (498)
133 2xxa_A Signal recognition part 95.3 0.068 2.3E-06 52.4 9.8 39 112-150 77-122 (433)
134 3asz_A Uridine kinase; cytidin 95.3 0.011 3.7E-07 51.7 3.7 24 127-150 5-28 (211)
135 4eun_A Thermoresistant glucoki 95.3 0.01 3.5E-07 51.6 3.4 23 128-150 29-51 (200)
136 3fwy_A Light-independent proto 95.3 0.01 3.6E-07 55.6 3.7 24 127-150 47-70 (314)
137 2hf9_A Probable hydrogenase ni 95.3 0.02 6.9E-07 50.4 5.4 40 110-151 22-61 (226)
138 1ex7_A Guanylate kinase; subst 95.3 0.008 2.7E-07 51.8 2.6 22 129-150 2-23 (186)
139 4gp7_A Metallophosphoesterase; 95.3 0.0095 3.3E-07 50.4 3.1 22 128-149 9-30 (171)
140 2bdt_A BH3686; alpha-beta prot 95.3 0.011 3.7E-07 50.7 3.5 22 129-150 3-24 (189)
141 1kht_A Adenylate kinase; phosp 95.2 0.01 3.5E-07 50.7 3.3 22 129-150 4-25 (192)
142 3t61_A Gluconokinase; PSI-biol 95.2 0.0082 2.8E-07 52.2 2.6 23 128-150 18-40 (202)
143 1tev_A UMP-CMP kinase; ploop, 95.2 0.012 3.9E-07 50.5 3.6 23 128-150 3-25 (196)
144 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.9E-07 51.7 3.5 24 128-151 8-31 (208)
145 2qt1_A Nicotinamide riboside k 95.2 0.013 4.4E-07 51.1 3.8 24 127-150 20-43 (207)
146 2jaq_A Deoxyguanosine kinase; 95.2 0.011 3.6E-07 51.2 3.3 21 130-150 2-22 (205)
147 1uf9_A TT1252 protein; P-loop, 95.2 0.013 4.4E-07 50.7 3.8 24 127-150 7-30 (203)
148 2wsm_A Hydrogenase expression/ 95.2 0.019 6.4E-07 50.4 4.9 41 109-151 13-53 (221)
149 2j41_A Guanylate kinase; GMP, 95.2 0.012 4E-07 51.1 3.5 23 128-150 6-28 (207)
150 3iij_A Coilin-interacting nucl 95.1 0.0096 3.3E-07 50.6 2.8 23 128-150 11-33 (180)
151 1zuh_A Shikimate kinase; alpha 95.1 0.011 3.9E-07 49.5 3.2 24 127-150 6-29 (168)
152 2ze6_A Isopentenyl transferase 95.1 0.012 4.1E-07 53.3 3.5 22 129-150 2-23 (253)
153 2if2_A Dephospho-COA kinase; a 95.1 0.012 4E-07 51.2 3.3 22 129-150 2-23 (204)
154 2c95_A Adenylate kinase 1; tra 95.1 0.013 4.4E-07 50.4 3.5 23 128-150 9-31 (196)
155 3a00_A Guanylate kinase, GMP k 95.1 0.0095 3.2E-07 51.1 2.6 22 129-150 2-23 (186)
156 1cke_A CK, MSSA, protein (cyti 95.1 0.012 4.1E-07 52.0 3.3 23 128-150 5-27 (227)
157 3hws_A ATP-dependent CLP prote 95.0 0.016 5.6E-07 55.3 4.4 43 109-151 19-74 (363)
158 2qor_A Guanylate kinase; phosp 95.0 0.01 3.6E-07 51.7 2.8 24 127-150 11-34 (204)
159 3tqc_A Pantothenate kinase; bi 95.0 0.032 1.1E-06 52.4 6.2 94 112-211 74-171 (321)
160 3p32_A Probable GTPase RV1496/ 95.0 0.026 8.8E-07 53.9 5.7 39 112-150 63-101 (355)
161 1ukz_A Uridylate kinase; trans 95.0 0.015 5.2E-07 50.4 3.7 24 127-150 14-37 (203)
162 1y63_A LMAJ004144AAA protein; 95.0 0.014 4.9E-07 49.9 3.5 23 128-150 10-32 (184)
163 2bbw_A Adenylate kinase 4, AK4 95.0 0.013 4.6E-07 52.6 3.5 23 128-150 27-49 (246)
164 1ye8_A Protein THEP1, hypothet 95.0 0.014 4.7E-07 49.9 3.4 22 130-151 2-23 (178)
165 1via_A Shikimate kinase; struc 95.0 0.011 3.7E-07 50.1 2.6 21 130-150 6-26 (175)
166 1uj2_A Uridine-cytidine kinase 95.0 0.014 4.9E-07 52.7 3.6 24 127-150 21-44 (252)
167 1jjv_A Dephospho-COA kinase; P 95.0 0.015 5E-07 50.7 3.5 22 129-150 3-24 (206)
168 2yvu_A Probable adenylyl-sulfa 94.9 0.017 5.7E-07 49.4 3.8 24 127-150 12-35 (186)
169 3cm0_A Adenylate kinase; ATP-b 94.9 0.015 5.2E-07 49.5 3.5 23 128-150 4-26 (186)
170 3tlx_A Adenylate kinase 2; str 94.9 0.024 8.1E-07 51.0 4.8 24 127-150 28-51 (243)
171 1lvg_A Guanylate kinase, GMP k 94.9 0.012 4E-07 51.2 2.7 23 128-150 4-26 (198)
172 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.016 5.4E-07 52.7 3.7 23 128-150 4-26 (260)
173 2plr_A DTMP kinase, probable t 94.9 0.017 5.6E-07 50.3 3.7 23 128-150 4-26 (213)
174 1j8m_F SRP54, signal recogniti 94.9 0.1 3.5E-06 48.3 9.2 91 128-221 98-190 (297)
175 2iyv_A Shikimate kinase, SK; t 94.9 0.011 3.6E-07 50.5 2.3 22 129-150 3-24 (184)
176 3d31_A Sulfate/molybdate ABC t 94.9 0.13 4.4E-06 48.8 10.0 127 128-257 26-194 (348)
177 3aez_A Pantothenate kinase; tr 94.9 0.017 5.9E-07 54.1 3.9 25 126-150 88-112 (312)
178 2bwj_A Adenylate kinase 5; pho 94.9 0.015 5.1E-07 50.1 3.2 23 128-150 12-34 (199)
179 2ck3_D ATP synthase subunit be 94.8 0.031 1.1E-06 55.0 5.6 65 116-182 142-207 (482)
180 1e6c_A Shikimate kinase; phosp 94.8 0.013 4.4E-07 49.3 2.6 22 129-150 3-24 (173)
181 3umf_A Adenylate kinase; rossm 94.8 0.02 6.7E-07 50.6 3.9 25 126-150 27-51 (217)
182 1qf9_A UMP/CMP kinase, protein 94.8 0.017 5.9E-07 49.3 3.4 23 128-150 6-28 (194)
183 1znw_A Guanylate kinase, GMP k 94.7 0.016 5.6E-07 50.6 3.2 23 128-150 20-42 (207)
184 2pt5_A Shikimate kinase, SK; a 94.7 0.018 6E-07 48.2 3.3 21 130-150 2-22 (168)
185 2jeo_A Uridine-cytidine kinase 94.7 0.02 6.9E-07 51.5 3.8 24 127-150 24-47 (245)
186 2vli_A Antibiotic resistance p 94.7 0.012 4.2E-07 50.0 2.3 23 128-150 5-27 (183)
187 1xjc_A MOBB protein homolog; s 94.7 0.018 6.3E-07 48.6 3.3 24 127-150 3-26 (169)
188 2cdn_A Adenylate kinase; phosp 94.7 0.02 6.7E-07 49.7 3.6 23 128-150 20-42 (201)
189 2pbr_A DTMP kinase, thymidylat 94.7 0.018 6E-07 49.4 3.2 21 130-150 2-22 (195)
190 2yhs_A FTSY, cell division pro 94.6 0.16 5.3E-06 50.4 10.2 38 113-150 271-315 (503)
191 4a74_A DNA repair and recombin 94.6 0.058 2E-06 47.4 6.6 56 127-183 24-83 (231)
192 1nn5_A Similar to deoxythymidy 94.6 0.02 7E-07 49.9 3.5 23 128-150 9-31 (215)
193 2ffh_A Protein (FFH); SRP54, s 94.6 0.08 2.8E-06 51.6 8.0 24 127-150 97-120 (425)
194 1zu4_A FTSY; GTPase, signal re 94.6 0.046 1.6E-06 51.3 6.0 24 127-150 104-127 (320)
195 3b9q_A Chloroplast SRP recepto 94.6 0.038 1.3E-06 51.4 5.4 24 127-150 99-122 (302)
196 4e22_A Cytidylate kinase; P-lo 94.6 0.019 6.7E-07 51.9 3.4 23 128-150 27-49 (252)
197 1sq5_A Pantothenate kinase; P- 94.5 0.047 1.6E-06 50.9 6.0 24 127-150 79-102 (308)
198 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.09 3.1E-06 49.5 8.0 107 129-254 172-278 (330)
199 3ney_A 55 kDa erythrocyte memb 94.5 0.022 7.5E-07 49.5 3.4 24 127-150 18-41 (197)
200 1htw_A HI0065; nucleotide-bind 94.5 0.024 8.1E-07 47.4 3.5 24 127-150 32-55 (158)
201 1z6g_A Guanylate kinase; struc 94.5 0.016 5.6E-07 51.1 2.6 23 128-150 23-45 (218)
202 2wwf_A Thymidilate kinase, put 94.5 0.021 7.1E-07 49.8 3.3 23 128-150 10-32 (212)
203 2grj_A Dephospho-COA kinase; T 94.5 0.023 7.9E-07 49.1 3.5 24 127-150 11-34 (192)
204 1q57_A DNA primase/helicase; d 94.5 0.16 5.4E-06 50.8 10.1 54 127-183 241-294 (503)
205 1sky_E F1-ATPase, F1-ATP synth 94.4 0.029 1E-06 55.2 4.5 61 117-180 141-203 (473)
206 1zd8_A GTP:AMP phosphotransfer 94.4 0.022 7.5E-07 50.5 3.2 23 128-150 7-29 (227)
207 4a1f_A DNAB helicase, replicat 94.4 0.12 4.1E-06 48.8 8.4 53 127-183 45-97 (338)
208 2z0h_A DTMP kinase, thymidylat 94.4 0.023 7.8E-07 48.8 3.2 21 130-150 2-22 (197)
209 2pez_A Bifunctional 3'-phospho 94.4 0.027 9.4E-07 47.7 3.7 23 128-150 5-27 (179)
210 1rj9_A FTSY, signal recognitio 94.4 0.023 8E-07 52.9 3.5 24 127-150 101-124 (304)
211 2r62_A Cell division protease 94.3 0.021 7.3E-07 51.8 3.1 43 109-151 15-67 (268)
212 1vht_A Dephospho-COA kinase; s 94.3 0.028 9.7E-07 49.3 3.8 23 128-150 4-26 (218)
213 1aky_A Adenylate kinase; ATP:A 94.3 0.025 8.4E-07 49.8 3.4 23 128-150 4-26 (220)
214 3l0o_A Transcription terminati 94.3 0.17 5.8E-06 48.5 9.2 35 115-150 163-197 (427)
215 2c9o_A RUVB-like 1; hexameric 94.3 0.043 1.5E-06 54.3 5.4 43 109-151 41-86 (456)
216 1m7g_A Adenylylsulfate kinase; 94.3 0.029 9.9E-07 49.1 3.7 23 128-150 25-47 (211)
217 2v54_A DTMP kinase, thymidylat 94.3 0.026 8.8E-07 48.8 3.4 23 128-150 4-26 (204)
218 3ice_A Transcription terminati 94.3 0.013 4.5E-07 56.1 1.5 51 116-170 163-216 (422)
219 2og2_A Putative signal recogni 94.3 0.05 1.7E-06 51.9 5.6 24 127-150 156-179 (359)
220 2ehv_A Hypothetical protein PH 94.3 0.024 8.3E-07 50.6 3.3 22 128-149 30-51 (251)
221 2ga8_A Hypothetical 39.9 kDa p 94.2 0.053 1.8E-06 51.4 5.6 39 112-150 6-46 (359)
222 1s96_A Guanylate kinase, GMP k 94.2 0.025 8.6E-07 50.0 3.3 112 127-254 15-143 (219)
223 2f6r_A COA synthase, bifunctio 94.2 0.029 1E-06 51.6 3.8 24 127-150 74-97 (281)
224 3fb4_A Adenylate kinase; psych 94.2 0.026 8.8E-07 49.4 3.2 21 130-150 2-22 (216)
225 1gtv_A TMK, thymidylate kinase 94.1 0.012 4.1E-07 51.4 0.9 21 130-150 2-22 (214)
226 1zak_A Adenylate kinase; ATP:A 94.1 0.024 8.1E-07 50.0 2.9 23 128-150 5-27 (222)
227 2onk_A Molybdate/tungstate ABC 94.1 0.03 1E-06 50.3 3.4 22 129-150 25-46 (240)
228 2i3b_A HCR-ntpase, human cance 94.0 0.025 8.5E-07 48.8 2.7 21 130-150 3-23 (189)
229 3dl0_A Adenylate kinase; phosp 94.0 0.029 9.9E-07 49.2 3.2 21 130-150 2-22 (216)
230 3lnc_A Guanylate kinase, GMP k 94.0 0.02 6.7E-07 50.9 2.0 23 128-150 27-50 (231)
231 3e1s_A Exodeoxyribonuclease V, 93.9 0.11 3.7E-06 53.0 7.6 104 128-248 204-313 (574)
232 3tif_A Uncharacterized ABC tra 93.9 0.029 9.9E-07 50.2 3.0 23 128-150 31-53 (235)
233 3ake_A Cytidylate kinase; CMP 93.9 0.033 1.1E-06 48.3 3.2 21 130-150 4-24 (208)
234 2j37_W Signal recognition part 93.9 0.21 7.1E-06 49.8 9.4 24 127-150 100-123 (504)
235 1ixz_A ATP-dependent metallopr 93.9 0.03 1E-06 50.5 3.0 21 131-151 52-72 (254)
236 2pcj_A ABC transporter, lipopr 93.9 0.03 1E-06 49.7 3.0 23 128-150 30-52 (224)
237 3nwj_A ATSK2; P loop, shikimat 93.9 0.026 8.8E-07 51.1 2.5 23 128-150 48-70 (250)
238 2f1r_A Molybdopterin-guanine d 93.8 0.018 6.1E-07 48.9 1.4 23 128-150 2-24 (171)
239 3b85_A Phosphate starvation-in 93.8 0.029 1E-06 49.1 2.8 23 128-150 22-44 (208)
240 2r44_A Uncharacterized protein 93.8 0.03 1E-06 52.6 3.0 38 109-150 31-68 (331)
241 1um8_A ATP-dependent CLP prote 93.7 0.049 1.7E-06 52.3 4.5 23 128-150 72-94 (376)
242 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.044 1.5E-06 54.7 4.2 39 109-151 26-64 (500)
243 1yrb_A ATP(GTP)binding protein 93.7 0.041 1.4E-06 49.6 3.7 24 127-150 13-36 (262)
244 1np6_A Molybdopterin-guanine d 93.7 0.039 1.3E-06 46.9 3.2 23 128-150 6-28 (174)
245 3d3q_A TRNA delta(2)-isopenten 93.7 0.038 1.3E-06 52.2 3.4 22 129-150 8-29 (340)
246 2q6t_A DNAB replication FORK h 93.7 0.29 9.9E-06 48.0 10.0 59 123-184 195-253 (444)
247 3a8t_A Adenylate isopentenyltr 93.7 0.043 1.5E-06 51.7 3.8 24 127-150 39-62 (339)
248 3b5x_A Lipid A export ATP-bind 93.6 0.29 1E-05 49.8 10.2 24 127-150 368-391 (582)
249 1svm_A Large T antigen; AAA+ f 93.6 0.075 2.6E-06 51.0 5.4 36 115-150 156-191 (377)
250 3gfo_A Cobalt import ATP-bindi 93.6 0.036 1.2E-06 50.9 3.0 60 198-257 148-210 (275)
251 3be4_A Adenylate kinase; malar 93.6 0.04 1.4E-06 48.4 3.3 22 129-150 6-27 (217)
252 1b0u_A Histidine permease; ABC 93.5 0.036 1.2E-06 50.4 3.0 23 128-150 32-54 (262)
253 2xb4_A Adenylate kinase; ATP-b 93.5 0.04 1.4E-06 48.7 3.3 21 130-150 2-22 (223)
254 2wji_A Ferrous iron transport 93.5 0.06 2.1E-06 44.7 4.2 23 129-151 4-26 (165)
255 3bgw_A DNAB-like replicative h 93.5 0.17 6E-06 49.6 8.0 51 127-181 196-246 (444)
256 3j16_B RLI1P; ribosome recycli 93.5 0.34 1.2E-05 49.5 10.5 130 129-258 379-535 (608)
257 1mv5_A LMRA, multidrug resista 93.5 0.041 1.4E-06 49.5 3.2 23 128-150 28-50 (243)
258 1e4v_A Adenylate kinase; trans 93.5 0.041 1.4E-06 48.2 3.2 21 130-150 2-22 (214)
259 2d2e_A SUFC protein; ABC-ATPas 93.5 0.042 1.4E-06 49.6 3.3 23 128-150 29-51 (250)
260 1ji0_A ABC transporter; ATP bi 93.4 0.039 1.3E-06 49.5 3.0 23 128-150 32-54 (240)
261 3r20_A Cytidylate kinase; stru 93.4 0.044 1.5E-06 48.9 3.3 23 128-150 9-31 (233)
262 4eaq_A DTMP kinase, thymidylat 93.4 0.079 2.7E-06 47.1 5.0 25 127-151 25-49 (229)
263 1g6h_A High-affinity branched- 93.4 0.04 1.4E-06 50.0 3.0 23 128-150 33-55 (257)
264 2zu0_C Probable ATP-dependent 93.4 0.045 1.5E-06 50.0 3.4 23 128-150 46-68 (267)
265 1ltq_A Polynucleotide kinase; 93.4 0.046 1.6E-06 50.5 3.5 22 129-150 3-24 (301)
266 2olj_A Amino acid ABC transpor 93.4 0.041 1.4E-06 50.1 3.0 23 128-150 50-72 (263)
267 1iy2_A ATP-dependent metallopr 93.3 0.041 1.4E-06 50.4 3.0 21 131-151 76-96 (278)
268 2iw3_A Elongation factor 3A; a 93.3 0.45 1.5E-05 51.2 11.4 125 128-257 461-611 (986)
269 3hjn_A DTMP kinase, thymidylat 93.3 0.11 3.8E-06 44.9 5.7 50 130-181 2-51 (197)
270 3exa_A TRNA delta(2)-isopenten 93.3 0.052 1.8E-06 50.5 3.7 23 128-150 3-25 (322)
271 1oix_A RAS-related protein RAB 93.3 0.048 1.6E-06 46.7 3.3 24 128-151 29-52 (191)
272 1ak2_A Adenylate kinase isoenz 93.3 0.051 1.7E-06 48.3 3.5 23 128-150 16-38 (233)
273 2ff7_A Alpha-hemolysin translo 93.3 0.042 1.5E-06 49.5 3.0 23 128-150 35-57 (247)
274 1tue_A Replication protein E1; 93.3 0.069 2.4E-06 46.5 4.1 36 114-150 45-80 (212)
275 3sr0_A Adenylate kinase; phosp 93.2 0.049 1.7E-06 47.7 3.2 21 130-150 2-22 (206)
276 3vr4_D V-type sodium ATPase su 93.2 0.055 1.9E-06 52.9 3.8 104 117-221 141-258 (465)
277 3crm_A TRNA delta(2)-isopenten 93.2 0.05 1.7E-06 50.9 3.5 23 128-150 5-27 (323)
278 2eyu_A Twitching motility prot 93.2 0.055 1.9E-06 49.2 3.6 111 127-255 24-137 (261)
279 1fzq_A ADP-ribosylation factor 93.2 0.066 2.3E-06 45.3 3.9 32 120-151 8-39 (181)
280 1fx0_A ATP synthase alpha chai 93.2 0.098 3.3E-06 51.8 5.5 88 128-221 163-265 (507)
281 1a7j_A Phosphoribulokinase; tr 93.1 0.03 1E-06 51.9 1.7 24 127-150 4-27 (290)
282 2dyk_A GTP-binding protein; GT 93.1 0.067 2.3E-06 43.8 3.8 23 129-151 2-24 (161)
283 2ixe_A Antigen peptide transpo 93.1 0.046 1.6E-06 50.0 3.0 23 128-150 45-67 (271)
284 2ghi_A Transport protein; mult 93.1 0.046 1.6E-06 49.7 3.0 23 128-150 46-68 (260)
285 2c61_A A-type ATP synthase non 93.1 0.042 1.4E-06 54.0 2.9 103 117-220 142-258 (469)
286 2zej_A Dardarin, leucine-rich 93.1 0.046 1.6E-06 46.4 2.8 22 130-151 4-25 (184)
287 3end_A Light-independent proto 93.1 0.058 2E-06 50.1 3.7 24 127-150 40-63 (307)
288 2qi9_C Vitamin B12 import ATP- 93.1 0.049 1.7E-06 49.2 3.0 23 128-150 26-48 (249)
289 2v3c_C SRP54, signal recogniti 93.0 0.067 2.3E-06 52.4 4.2 24 127-150 98-121 (432)
290 2yz2_A Putative ABC transporte 93.0 0.048 1.7E-06 49.7 3.0 23 128-150 33-55 (266)
291 1tq4_A IIGP1, interferon-induc 93.0 0.057 2E-06 52.5 3.6 36 115-150 56-91 (413)
292 2ged_A SR-beta, signal recogni 93.0 0.076 2.6E-06 45.2 4.1 25 127-151 47-71 (193)
293 2r9v_A ATP synthase subunit al 93.0 0.093 3.2E-06 51.9 5.1 61 116-181 164-227 (515)
294 2ihy_A ABC transporter, ATP-bi 93.0 0.05 1.7E-06 50.0 3.0 23 128-150 47-69 (279)
295 2nq2_C Hypothetical ABC transp 92.9 0.051 1.7E-06 49.2 3.0 129 128-256 31-194 (253)
296 3gqb_B V-type ATP synthase bet 92.9 0.038 1.3E-06 54.0 2.2 104 117-221 137-261 (464)
297 3zvl_A Bifunctional polynucleo 92.9 0.055 1.9E-06 52.8 3.4 24 127-150 257-280 (416)
298 3foz_A TRNA delta(2)-isopenten 92.9 0.069 2.4E-06 49.6 3.8 24 127-150 9-32 (316)
299 1nlf_A Regulatory protein REPA 92.8 0.054 1.8E-06 49.6 3.1 23 128-150 30-52 (279)
300 2f9l_A RAB11B, member RAS onco 92.8 0.055 1.9E-06 46.5 3.0 24 128-151 5-28 (199)
301 2vp4_A Deoxynucleoside kinase; 92.8 0.05 1.7E-06 48.3 2.8 24 127-150 19-42 (230)
302 2qe7_A ATP synthase subunit al 92.8 0.16 5.4E-06 50.2 6.5 100 117-221 152-264 (502)
303 1q3t_A Cytidylate kinase; nucl 92.8 0.065 2.2E-06 47.7 3.5 24 127-150 15-38 (236)
304 2p67_A LAO/AO transport system 92.8 0.13 4.3E-06 48.7 5.7 35 116-150 44-78 (341)
305 3llm_A ATP-dependent RNA helic 92.8 0.36 1.2E-05 42.7 8.5 103 114-221 66-186 (235)
306 2lkc_A Translation initiation 92.8 0.1 3.6E-06 43.4 4.6 25 127-151 7-31 (178)
307 1ls1_A Signal recognition part 92.8 0.071 2.4E-06 49.4 3.8 23 128-150 98-120 (295)
308 2qm8_A GTPase/ATPase; G protei 92.8 0.11 3.8E-06 49.0 5.2 35 116-150 43-77 (337)
309 2ce2_X GTPase HRAS; signaling 92.7 0.065 2.2E-06 43.9 3.2 22 130-151 5-26 (166)
310 2v9p_A Replication protein E1; 92.7 0.1 3.5E-06 48.5 4.8 24 127-150 125-148 (305)
311 1g8p_A Magnesium-chelatase 38 92.7 0.052 1.8E-06 51.2 2.8 41 109-151 28-68 (350)
312 3cmu_A Protein RECA, recombina 92.7 0.17 5.8E-06 58.3 7.2 88 127-221 1426-1515(2050)
313 1cp2_A CP2, nitrogenase iron p 92.6 0.071 2.4E-06 48.3 3.5 22 129-150 2-23 (269)
314 2ocp_A DGK, deoxyguanosine kin 92.6 0.075 2.6E-06 47.4 3.6 24 128-151 2-25 (241)
315 1nij_A Hypothetical protein YJ 92.6 0.065 2.2E-06 50.2 3.3 25 127-151 3-27 (318)
316 4edh_A DTMP kinase, thymidylat 92.6 0.16 5.4E-06 44.6 5.6 23 128-150 6-28 (213)
317 1z2a_A RAS-related protein RAB 92.6 0.073 2.5E-06 43.9 3.2 24 128-151 5-28 (168)
318 2wjg_A FEOB, ferrous iron tran 92.5 0.082 2.8E-06 44.7 3.6 24 128-151 7-30 (188)
319 1z08_A RAS-related protein RAB 92.5 0.096 3.3E-06 43.3 3.9 25 128-152 6-30 (170)
320 2nzj_A GTP-binding protein REM 92.4 0.077 2.6E-06 44.1 3.2 24 128-151 4-27 (175)
321 3def_A T7I23.11 protein; chlor 92.4 0.18 6.2E-06 45.6 6.0 39 114-152 22-60 (262)
322 3con_A GTPase NRAS; structural 92.4 0.077 2.6E-06 45.0 3.2 24 129-152 22-45 (190)
323 3sop_A Neuronal-specific septi 92.3 0.074 2.5E-06 48.6 3.2 21 130-150 4-24 (270)
324 1u8z_A RAS-related protein RAL 92.3 0.082 2.8E-06 43.4 3.3 24 129-152 5-28 (168)
325 1h65_A Chloroplast outer envel 92.2 0.19 6.5E-06 45.7 5.9 41 112-152 23-63 (270)
326 2afh_E Nitrogenase iron protei 92.2 0.09 3.1E-06 48.3 3.7 23 128-150 2-24 (289)
327 2dr3_A UPF0273 protein PH0284; 92.1 0.083 2.8E-06 46.9 3.2 39 128-168 23-61 (247)
328 2qmh_A HPR kinase/phosphorylas 92.1 0.095 3.2E-06 45.4 3.4 23 128-150 34-56 (205)
329 1c1y_A RAS-related protein RAP 92.1 0.11 3.8E-06 42.6 3.8 22 130-151 5-26 (167)
330 2bbs_A Cystic fibrosis transme 92.0 0.074 2.5E-06 49.1 2.9 54 203-256 169-224 (290)
331 1ek0_A Protein (GTP-binding pr 92.0 0.093 3.2E-06 43.2 3.3 23 130-152 5-27 (170)
332 1z0j_A RAB-22, RAS-related pro 92.0 0.094 3.2E-06 43.2 3.3 24 129-152 7-30 (170)
333 2erx_A GTP-binding protein DI- 92.0 0.089 3E-06 43.5 3.1 23 129-151 4-26 (172)
334 1kao_A RAP2A; GTP-binding prot 92.0 0.098 3.3E-06 42.9 3.3 23 129-151 4-26 (167)
335 1g41_A Heat shock protein HSLU 91.9 0.13 4.3E-06 50.4 4.5 42 109-150 19-72 (444)
336 2gj8_A MNME, tRNA modification 91.9 0.089 3E-06 44.1 3.1 23 129-151 5-27 (172)
337 3nh6_A ATP-binding cassette SU 91.9 0.054 1.9E-06 50.4 1.8 23 128-150 80-102 (306)
338 1ky3_A GTP-binding protein YPT 91.9 0.099 3.4E-06 43.7 3.3 26 127-152 7-32 (182)
339 1m7b_A RND3/RHOE small GTP-bin 91.8 0.098 3.3E-06 44.2 3.2 24 128-151 7-30 (184)
340 3qf4_A ABC transporter, ATP-bi 91.8 0.5 1.7E-05 48.2 9.0 23 128-150 369-391 (587)
341 3ihw_A Centg3; RAS, centaurin, 91.7 0.1 3.5E-06 44.3 3.2 24 128-151 20-43 (184)
342 3kta_A Chromosome segregation 91.7 0.1 3.6E-06 44.1 3.3 22 129-150 27-48 (182)
343 3fvq_A Fe(3+) IONS import ATP- 91.7 0.094 3.2E-06 49.9 3.3 131 128-258 30-206 (359)
344 2iw3_A Elongation factor 3A; a 91.7 0.59 2E-05 50.3 9.7 58 199-258 907-965 (986)
345 2fn4_A P23, RAS-related protei 91.7 0.13 4.4E-06 42.9 3.8 25 127-151 8-32 (181)
346 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.11 3.7E-06 43.3 3.3 24 128-151 7-30 (177)
347 3q72_A GTP-binding protein RAD 91.6 0.094 3.2E-06 43.2 2.9 22 130-151 4-25 (166)
348 1u0j_A DNA replication protein 91.6 0.19 6.6E-06 45.5 5.1 37 114-150 90-126 (267)
349 1g16_A RAS-related protein SEC 91.6 0.11 3.7E-06 42.9 3.2 23 129-151 4-26 (170)
350 1nrj_B SR-beta, signal recogni 91.6 0.12 4.2E-06 44.9 3.7 25 127-151 11-35 (218)
351 3eph_A TRNA isopentenyltransfe 91.6 0.1 3.5E-06 50.3 3.4 23 128-150 2-24 (409)
352 2f7s_A C25KG, RAS-related prot 91.6 1.1 3.7E-05 38.6 9.9 24 128-151 25-48 (217)
353 3kkq_A RAS-related protein M-R 91.6 0.13 4.5E-06 43.1 3.8 25 127-151 17-41 (183)
354 1zj6_A ADP-ribosylation factor 91.6 0.23 7.9E-06 41.9 5.4 35 114-151 5-39 (187)
355 4dsu_A GTPase KRAS, isoform 2B 91.6 0.13 4.5E-06 43.2 3.8 24 129-152 5-28 (189)
356 3cmu_A Protein RECA, recombina 91.6 0.33 1.1E-05 55.9 7.9 88 127-221 382-471 (2050)
357 3c5c_A RAS-like protein 12; GD 91.5 0.11 3.8E-06 44.1 3.3 25 128-152 21-45 (187)
358 1r2q_A RAS-related protein RAB 91.5 0.11 3.9E-06 42.7 3.3 23 129-151 7-29 (170)
359 1p5z_B DCK, deoxycytidine kina 91.5 0.07 2.4E-06 48.3 2.1 24 127-150 23-46 (263)
360 3q85_A GTP-binding protein REM 91.5 0.13 4.4E-06 42.5 3.6 22 129-150 3-24 (169)
361 1r8s_A ADP-ribosylation factor 91.5 0.1 3.5E-06 42.8 3.0 21 131-151 3-23 (164)
362 1z0f_A RAB14, member RAS oncog 91.5 0.11 3.9E-06 43.2 3.3 25 128-152 15-39 (179)
363 3tw8_B RAS-related protein RAB 91.5 0.097 3.3E-06 43.7 2.8 25 127-151 8-32 (181)
364 1svi_A GTP-binding protein YSX 91.5 0.12 4E-06 44.0 3.4 25 127-151 22-46 (195)
365 3t5g_A GTP-binding protein RHE 91.5 0.14 4.6E-06 43.0 3.7 25 128-152 6-30 (181)
366 3pqc_A Probable GTP-binding pr 91.5 0.13 4.4E-06 43.6 3.6 25 128-152 23-47 (195)
367 1z47_A CYSA, putative ABC-tran 91.4 0.11 3.6E-06 49.5 3.3 131 128-258 41-213 (355)
368 1m2o_B GTP-binding protein SAR 91.4 0.11 3.9E-06 44.2 3.2 24 128-151 23-46 (190)
369 2cxx_A Probable GTP-binding pr 91.4 0.11 3.8E-06 43.9 3.1 22 130-151 3-24 (190)
370 3thx_A DNA mismatch repair pro 91.4 0.41 1.4E-05 51.4 8.1 21 128-148 662-682 (934)
371 2www_A Methylmalonic aciduria 91.4 0.13 4.5E-06 48.8 3.9 24 127-150 73-96 (349)
372 2hxs_A RAB-26, RAS-related pro 91.3 0.12 4.1E-06 43.1 3.2 24 128-151 6-29 (178)
373 3v9p_A DTMP kinase, thymidylat 91.3 0.15 5.1E-06 45.2 4.0 23 128-150 25-47 (227)
374 1lw7_A Transcriptional regulat 91.3 0.1 3.5E-06 49.9 3.1 23 128-150 170-192 (365)
375 2bme_A RAB4A, RAS-related prot 91.3 0.12 4E-06 43.5 3.2 25 128-152 10-34 (186)
376 3t1o_A Gliding protein MGLA; G 91.3 0.11 3.7E-06 44.1 3.0 23 128-150 14-36 (198)
377 2y8e_A RAB-protein 6, GH09086P 91.2 0.12 4.2E-06 42.9 3.2 23 129-151 15-37 (179)
378 3cmw_A Protein RECA, recombina 91.2 0.25 8.6E-06 56.1 6.5 88 127-221 382-471 (1706)
379 2h92_A Cytidylate kinase; ross 91.2 0.099 3.4E-06 45.7 2.7 22 129-150 4-25 (219)
380 4tmk_A Protein (thymidylate ki 91.2 0.22 7.6E-06 43.6 4.9 52 129-181 4-55 (213)
381 2axn_A 6-phosphofructo-2-kinas 91.2 0.13 4.4E-06 51.7 3.8 24 127-150 34-57 (520)
382 2ck3_A ATP synthase subunit al 91.2 0.13 4.3E-06 51.0 3.6 65 116-181 151-222 (510)
383 3rlf_A Maltose/maltodextrin im 91.2 0.12 4E-06 49.6 3.4 129 128-258 29-201 (381)
384 2a9k_A RAS-related protein RAL 91.2 0.13 4.3E-06 43.2 3.3 25 128-152 18-42 (187)
385 3tkl_A RAS-related protein RAB 91.2 0.16 5.6E-06 43.0 4.0 26 127-152 15-40 (196)
386 3bc1_A RAS-related protein RAB 91.2 0.16 5.5E-06 42.8 3.9 25 128-152 11-35 (195)
387 2yyz_A Sugar ABC transporter, 91.1 0.12 4E-06 49.3 3.3 129 128-258 29-201 (359)
388 1mh1_A RAC1; GTP-binding, GTPa 91.1 0.13 4.3E-06 43.2 3.2 23 129-151 6-28 (186)
389 3k1j_A LON protease, ATP-depen 91.1 0.34 1.2E-05 49.6 7.0 38 109-150 45-82 (604)
390 4hlc_A DTMP kinase, thymidylat 91.1 0.17 5.8E-06 44.1 4.0 29 129-159 3-31 (205)
391 2it1_A 362AA long hypothetical 91.1 0.12 4.1E-06 49.2 3.4 131 128-258 29-201 (362)
392 2oil_A CATX-8, RAS-related pro 91.1 0.13 4.4E-06 43.7 3.3 26 127-152 24-49 (193)
393 3bwd_D RAC-like GTP-binding pr 91.1 0.13 4.5E-06 43.0 3.3 24 128-151 8-31 (182)
394 3gmt_A Adenylate kinase; ssgci 91.1 0.12 4E-06 45.9 3.0 23 128-150 8-30 (230)
395 2iwr_A Centaurin gamma 1; ANK 91.1 0.097 3.3E-06 43.8 2.4 23 129-151 8-30 (178)
396 2efe_B Small GTP-binding prote 91.1 0.13 4.6E-06 42.9 3.3 24 128-151 12-35 (181)
397 2bov_A RAla, RAS-related prote 91.1 0.13 4.4E-06 44.1 3.3 25 128-152 14-38 (206)
398 2r8r_A Sensor protein; KDPD, P 91.1 0.12 4.1E-06 45.7 3.0 108 130-251 8-127 (228)
399 4gzl_A RAS-related C3 botulinu 91.0 0.18 6.2E-06 43.5 4.2 25 128-152 30-54 (204)
400 3lv8_A DTMP kinase, thymidylat 91.0 0.23 7.8E-06 44.3 4.9 23 128-150 27-49 (236)
401 1upt_A ARL1, ADP-ribosylation 91.0 0.18 6E-06 41.6 4.0 24 128-151 7-30 (171)
402 1vg8_A RAS-related protein RAB 91.0 0.13 4.6E-06 44.1 3.3 26 127-152 7-32 (207)
403 1g29_1 MALK, maltose transport 91.0 0.12 4.2E-06 49.4 3.3 23 128-150 29-51 (372)
404 1v43_A Sugar-binding transport 90.9 0.13 4.4E-06 49.3 3.4 131 128-258 37-209 (372)
405 3cbq_A GTP-binding protein REM 90.9 0.1 3.4E-06 44.9 2.4 23 127-149 22-44 (195)
406 1f6b_A SAR1; gtpases, N-termin 90.9 0.095 3.3E-06 45.1 2.2 24 128-151 25-48 (198)
407 2atv_A RERG, RAS-like estrogen 90.9 0.14 4.8E-06 43.7 3.3 24 128-151 28-51 (196)
408 2ewv_A Twitching motility prot 90.9 0.13 4.5E-06 49.3 3.4 109 127-254 135-247 (372)
409 3llu_A RAS-related GTP-binding 90.9 0.13 4.4E-06 44.0 3.0 24 128-151 20-43 (196)
410 2g6b_A RAS-related protein RAB 90.9 0.14 4.9E-06 42.7 3.3 25 128-152 10-34 (180)
411 2fg5_A RAB-22B, RAS-related pr 90.8 0.14 4.9E-06 43.5 3.3 25 128-152 23-47 (192)
412 1zd9_A ADP-ribosylation factor 90.8 0.18 6.3E-06 42.7 3.9 25 128-152 22-46 (188)
413 1zbd_A Rabphilin-3A; G protein 90.7 0.15 5.1E-06 43.7 3.4 25 128-152 8-32 (203)
414 1pui_A ENGB, probable GTP-bind 90.7 0.096 3.3E-06 45.2 2.1 24 128-151 26-49 (210)
415 1gwn_A RHO-related GTP-binding 90.7 0.14 4.9E-06 44.3 3.2 25 128-152 28-52 (205)
416 2cjw_A GTP-binding protein GEM 90.7 0.14 4.7E-06 43.8 3.1 23 128-150 6-28 (192)
417 3oes_A GTPase rhebl1; small GT 90.7 0.15 5E-06 43.8 3.2 25 128-152 24-48 (201)
418 2fh5_B SR-beta, signal recogni 90.7 0.17 5.9E-06 43.7 3.8 25 128-152 7-31 (214)
419 2obl_A ESCN; ATPase, hydrolase 90.7 0.13 4.6E-06 48.7 3.2 34 117-151 61-94 (347)
420 1p9r_A General secretion pathw 90.6 0.24 8.4E-06 48.1 5.1 40 109-150 150-189 (418)
421 2yv5_A YJEQ protein; hydrolase 90.6 0.2 7E-06 46.4 4.3 31 114-149 156-186 (302)
422 3clv_A RAB5 protein, putative; 90.6 0.16 5.4E-06 43.2 3.3 25 128-152 7-31 (208)
423 2gf9_A RAS-related protein RAB 90.5 0.16 5.4E-06 43.1 3.3 25 128-152 22-46 (189)
424 2gza_A Type IV secretion syste 90.5 0.11 3.9E-06 49.5 2.6 23 128-150 175-197 (361)
425 3reg_A RHO-like small GTPase; 90.5 0.16 5.3E-06 43.3 3.3 25 128-152 23-47 (194)
426 4f4c_A Multidrug resistance pr 90.5 1.1 3.6E-05 50.4 10.7 23 128-150 1105-1127(1321)
427 3vkw_A Replicase large subunit 90.5 1.1 3.7E-05 43.7 9.5 106 126-248 159-267 (446)
428 2orw_A Thymidine kinase; TMTK, 90.5 0.15 5.2E-06 43.5 3.1 22 129-150 4-25 (184)
429 3mfy_A V-type ATP synthase alp 90.5 0.26 8.8E-06 49.3 5.1 59 116-179 216-275 (588)
430 1ksh_A ARF-like protein 2; sma 90.5 0.15 5E-06 43.0 3.0 26 127-152 17-42 (186)
431 2a5j_A RAS-related protein RAB 90.5 0.16 5.4E-06 43.1 3.3 24 128-151 21-44 (191)
432 2qnr_A Septin-2, protein NEDD5 90.5 0.12 4E-06 48.0 2.6 20 131-150 21-40 (301)
433 2qu8_A Putative nucleolar GTP- 90.4 0.2 6.8E-06 44.1 3.9 25 127-151 28-52 (228)
434 4bas_A ADP-ribosylation factor 90.4 0.17 5.9E-06 43.0 3.4 26 127-152 16-41 (199)
435 1z06_A RAS-related protein RAB 90.4 0.17 5.7E-06 42.9 3.3 24 128-151 20-43 (189)
436 2ew1_A RAS-related protein RAB 90.3 0.15 5.1E-06 44.1 3.0 25 127-151 25-49 (201)
437 4dzz_A Plasmid partitioning pr 90.3 0.15 5.2E-06 43.8 3.1 41 129-171 2-43 (206)
438 3gd7_A Fusion complex of cysti 90.3 0.15 5.2E-06 49.1 3.3 23 128-150 47-69 (390)
439 1ega_A Protein (GTP-binding pr 90.3 0.17 5.7E-06 47.0 3.5 25 127-151 7-31 (301)
440 3dz8_A RAS-related protein RAB 90.3 0.15 5.2E-06 43.3 3.0 24 128-151 23-46 (191)
441 1x3s_A RAS-related protein RAB 90.3 0.17 5.8E-06 42.9 3.3 25 128-152 15-39 (195)
442 2p5s_A RAS and EF-hand domain 90.3 0.17 5.7E-06 43.4 3.2 25 127-151 27-51 (199)
443 3vr4_A V-type sodium ATPase ca 90.3 0.31 1.1E-05 48.8 5.5 58 116-178 221-279 (600)
444 1moz_A ARL1, ADP-ribosylation 90.3 0.16 5.4E-06 42.6 3.0 24 127-150 17-40 (183)
445 1bif_A 6-phosphofructo-2-kinas 90.2 0.17 5.8E-06 50.1 3.7 23 128-150 39-61 (469)
446 3fdi_A Uncharacterized protein 90.2 0.16 5.5E-06 44.1 3.1 23 128-150 6-28 (201)
447 2o52_A RAS-related protein RAB 90.2 0.16 5.4E-06 43.7 3.1 25 127-151 24-48 (200)
448 2q3h_A RAS homolog gene family 90.2 0.16 5.4E-06 43.5 3.1 24 128-151 20-43 (201)
449 2b6h_A ADP-ribosylation factor 90.2 0.15 5E-06 43.6 2.8 24 128-151 29-52 (192)
450 1mky_A Probable GTP-binding pr 90.2 0.34 1.1E-05 47.5 5.7 44 109-152 152-204 (439)
451 2bcg_Y Protein YP2, GTP-bindin 90.1 0.17 5.9E-06 43.5 3.2 25 128-152 8-32 (206)
452 1g8f_A Sulfate adenylyltransfe 90.1 0.18 6.1E-06 50.4 3.6 24 127-150 394-417 (511)
453 4dkx_A RAS-related protein RAB 90.1 0.18 6E-06 44.3 3.3 22 130-151 15-36 (216)
454 3iev_A GTP-binding protein ERA 90.0 0.2 6.7E-06 46.6 3.7 26 126-151 8-33 (308)
455 2j1l_A RHO-related GTP-binding 90.0 0.17 5.8E-06 44.0 3.1 24 128-151 34-57 (214)
456 3lxx_A GTPase IMAP family memb 90.0 0.23 7.8E-06 44.1 4.0 26 127-152 28-53 (239)
457 2fv8_A H6, RHO-related GTP-bin 90.0 0.18 6.2E-06 43.5 3.2 24 128-151 25-48 (207)
458 3cph_A RAS-related protein SEC 89.9 0.23 8E-06 42.7 3.9 24 128-151 20-43 (213)
459 2g3y_A GTP-binding protein GEM 89.9 0.18 6E-06 44.1 3.1 23 128-150 37-59 (211)
460 3oaa_A ATP synthase subunit al 89.9 0.49 1.7E-05 46.7 6.5 98 117-221 152-264 (513)
461 2hup_A RAS-related protein RAB 89.9 0.19 6.5E-06 43.2 3.3 25 127-151 28-52 (201)
462 2gf0_A GTP-binding protein DI- 89.9 0.24 8.3E-06 42.0 3.9 24 128-151 8-31 (199)
463 3ld9_A DTMP kinase, thymidylat 89.9 0.23 7.7E-06 43.9 3.8 24 127-150 20-43 (223)
464 3cr8_A Sulfate adenylyltranfer 89.8 0.12 4.3E-06 52.1 2.3 23 128-150 369-391 (552)
465 2h17_A ADP-ribosylation factor 89.8 0.17 5.7E-06 42.6 2.8 24 128-151 21-44 (181)
466 2il1_A RAB12; G-protein, GDP, 89.8 0.15 5.2E-06 43.4 2.6 24 128-151 26-49 (192)
467 1oxx_K GLCV, glucose, ABC tran 89.8 0.099 3.4E-06 49.7 1.5 131 128-258 31-208 (353)
468 2atx_A Small GTP binding prote 89.8 0.19 6.5E-06 42.7 3.1 24 128-151 18-41 (194)
469 2j0v_A RAC-like GTP-binding pr 89.7 0.19 6.7E-06 43.3 3.2 24 128-151 9-32 (212)
470 2gco_A H9, RHO-related GTP-bin 89.6 0.2 6.8E-06 43.0 3.2 24 128-151 25-48 (201)
471 2npi_A Protein CLP1; CLP1-PCF1 89.6 0.15 5E-06 50.4 2.5 23 128-150 138-160 (460)
472 3q3j_B RHO-related GTP-binding 89.5 0.25 8.5E-06 43.0 3.8 25 128-152 27-51 (214)
473 3iqw_A Tail-anchored protein t 89.5 0.42 1.4E-05 45.0 5.6 24 127-150 15-38 (334)
474 4f4c_A Multidrug resistance pr 89.5 1.3 4.5E-05 49.6 10.4 24 127-150 443-466 (1321)
475 3tmk_A Thymidylate kinase; pho 89.5 0.39 1.3E-05 42.1 5.0 23 128-150 5-27 (216)
476 2rcn_A Probable GTPase ENGC; Y 89.5 0.2 7E-06 47.6 3.4 22 129-150 216-237 (358)
477 2zts_A Putative uncharacterize 89.4 0.21 7.1E-06 44.3 3.3 50 127-179 29-78 (251)
478 2fz4_A DNA repair protein RAD2 89.4 0.83 2.9E-05 40.5 7.2 95 131-236 111-217 (237)
479 3ez2_A Plasmid partition prote 89.4 0.35 1.2E-05 46.6 5.1 26 125-150 105-131 (398)
480 3k53_A Ferrous iron transport 89.4 0.24 8.2E-06 45.0 3.7 24 128-151 3-26 (271)
481 3ch4_B Pmkase, phosphomevalona 89.4 0.29 9.9E-06 42.4 3.9 24 127-150 10-33 (202)
482 2qag_B Septin-6, protein NEDD5 89.3 0.18 6.2E-06 49.1 2.9 21 131-151 45-65 (427)
483 3fkq_A NTRC-like two-domain pr 89.2 0.27 9.3E-06 47.0 4.1 25 126-150 141-166 (373)
484 1u0l_A Probable GTPase ENGC; p 89.2 0.29 9.9E-06 45.3 4.2 32 114-150 160-191 (301)
485 3io3_A DEHA2D07832P; chaperone 89.2 0.38 1.3E-05 45.6 5.0 24 127-150 17-40 (348)
486 3b1v_A Ferrous iron uptake tra 89.2 0.34 1.2E-05 44.1 4.6 24 128-151 3-26 (272)
487 2fu5_C RAS-related protein RAB 89.2 0.13 4.4E-06 43.2 1.6 24 128-151 8-31 (183)
488 3ug7_A Arsenical pump-driving 89.2 0.35 1.2E-05 45.8 4.8 26 125-150 23-48 (349)
489 2x77_A ADP-ribosylation factor 89.1 0.3 1E-05 41.2 3.9 25 127-151 21-45 (189)
490 2h57_A ADP-ribosylation factor 89.1 0.16 5.4E-06 43.1 2.1 25 128-152 21-45 (190)
491 1zcb_A G alpha I/13; GTP-bindi 89.0 0.25 8.7E-06 47.0 3.7 22 127-148 32-53 (362)
492 1yqt_A RNAse L inhibitor; ATP- 89.0 0.22 7.4E-06 50.2 3.4 131 128-258 312-469 (538)
493 1m8p_A Sulfate adenylyltransfe 88.9 0.25 8.5E-06 50.2 3.7 24 127-150 395-418 (573)
494 2dpy_A FLII, flagellum-specifi 88.9 0.22 7.4E-06 48.9 3.2 34 117-151 147-180 (438)
495 3ozx_A RNAse L inhibitor; ATP 88.9 0.2 6.9E-06 50.5 3.0 130 129-258 295-453 (538)
496 3kjh_A CO dehydrogenase/acetyl 88.8 0.31 1.1E-05 43.2 3.9 21 131-151 3-23 (254)
497 3cwq_A Para family chromosome 88.8 0.25 8.5E-06 43.0 3.2 41 130-173 2-43 (209)
498 1x6v_B Bifunctional 3'-phospho 88.8 0.25 8.5E-06 50.6 3.6 24 127-150 51-74 (630)
499 2xtp_A GTPase IMAP family memb 88.7 0.32 1.1E-05 43.7 4.0 26 127-152 21-46 (260)
500 1wf3_A GTP-binding protein; GT 88.7 0.29 1E-05 45.3 3.8 25 127-151 6-30 (301)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-45 Score=378.36 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=216.6
Q ss_pred hhhhhHHHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHc--CCCccCCcceeEEEEeCCCC--CHHHHHHHHHHHh
Q 042081 109 EFESGREELFDLLIEG-QPQLSVVAILDSSGFDKTAFAADTYN--NNHVKFYFDCHAWVRVSIAY--NFRMILDDIIKSV 183 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l 183 (422)
||+.++++|.++|..+ +...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ ++..++..|+.++
T Consensus 132 GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l 211 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 9999999999999865 44689999999999999999999998 77999999999999999885 8899999999999
Q ss_pred CCCCC---CCccCCCCHHHHHHHHHHhcCCc-eEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhccc
Q 042081 184 MPPSR---VSVVIGEDYQLKKSILRDYLTNK-KYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDL 259 (422)
Q Consensus 184 ~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~ 259 (422)
+.... .......+...+...+++.|+++ |||||||||| +.+.+ .+.. .+||+||||||++.++..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~--~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 212 KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV--QEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp TTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC--CHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred hcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC--Cchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 87632 11111246778899999999996 9999999999 76654 2211 169999999999999987752
Q ss_pred CC-CCCcc--------------------------------------c-hHHHhhhhccCCChHHHHHHHHHhcccccccc
Q 042081 260 EN-GQTIH--------------------------------------P-DSVLVGGPLIRLKHEAWQFFILHYGKTTLRIY 299 (422)
Q Consensus 260 ~~-~~~~~--------------------------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~~~~~~~ 299 (422)
.. .+.+. | ||+++|+.|+.+. |+.+ +.+.+.....
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~- 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESR- 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHH-
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhcc-
Confidence 21 00110 9 9999999998773 4333 3332222211
Q ss_pred cchhhhhhhhhHhhhhcCCchhhHHHHH-----------HhhhcCCCceechhHHHHHHHHc--CCCCCC-----hHHHH
Q 042081 300 MGEKAFLTAWSTIYSVLELPVHLKICCL-----------YLCLFHPGIEISTRQLYWLWVAE--GFIPHN-----SEETA 361 (422)
Q Consensus 300 ~~~~i~~~~~~l~~sy~~Lp~~~k~cfl-----------~ls~Fp~~~~i~~~~Li~~W~ae--g~i~~~-----~e~~~ 361 (422)
....+ .++ +.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+... .++.+
T Consensus 359 ~~~~i-~~~--l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 GLVGV-ECI--TPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp CSSTT-CCC--SSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred cHHHH-HHH--HhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 12357 788 99999999999999999 999999999999 8999999 999753 56677
Q ss_pred HHHHHHHHHCCceeeeecCCCCceeeEEcCHHHHHHHHHhchhcCe
Q 042081 362 EHYLNELIDRGFIQVKKRRAGGTIKACYVPTFAYVALLLPAALTGF 407 (422)
Q Consensus 362 ~~~l~~Lv~r~ll~~~~~~~~g~~~~~~~Hdlv~~~a~~~~~~~~f 407 (422)
+ ||++|+++|||++...+ +..+|+|||+||+||++++.++++
T Consensus 432 ~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp H-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 6 99999999999987643 346899999999999999877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-37 Score=348.73 Aligned_cols=274 Identities=19% Similarity=0.253 Sum_probs=219.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCc-cCCc-ceeEEEEeCCCCC--HHHHHHHHHHHhC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHV-KFYF-DCHAWVRVSIAYN--FRMILDDIIKSVM 184 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~il~~l~ 184 (422)
||++++++|.++|...+...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ....+..++..+.
T Consensus 128 gR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~ 207 (1249)
T 3sfz_A 128 TRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 207 (1249)
T ss_dssp CCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhh
Confidence 9999999999999876667999999999999999999999996433 4556 5688999998654 3455777888887
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhcCCc--eEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcc-cCC
Q 042081 185 PPSRVSVVIGEDYQLKKSILRDYLTNK--KYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFD-LEN 261 (422)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~-~~~ 261 (422)
...........+.+++...++..|.++ |+|||||||| +...|..+ .+||+||||||++.++..+. ...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~--~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~ 278 (1249)
T 3sfz_A 208 QEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKH 278 (1249)
T ss_dssp TTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC--CHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBC
T ss_pred hhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC--CHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCce
Confidence 654322222367899999999999987 9999999999 77665543 46899999999999885432 211
Q ss_pred CCC----cc---------------------------------c-hHHHhhhhccCCChHHHHHHHHHhccccc------c
Q 042081 262 GQT----IH---------------------------------P-DSVLVGGPLIRLKHEAWQFFILHYGKTTL------R 297 (422)
Q Consensus 262 ~~~----~~---------------------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~~~~------~ 297 (422)
... +. | ||+++|++|+.++. .|..+++.+..... .
T Consensus 279 ~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~-~~~~~l~~l~~~~~~~~~~~~ 357 (1249)
T 3sfz_A 279 VVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSS 357 (1249)
T ss_dssp CEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS-CHHHHHHHHHSCCCCCSSCTT
T ss_pred EEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh-HHHHHHHHHhhhhhhhccccc
Confidence 100 10 9 99999999988764 78888887743321 1
Q ss_pred cccchhhhhhhhhHhhhhcCCchhhHHHHHHhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCceeee
Q 042081 298 IYMGEKAFLTAWSTIYSVLELPVHLKICCLYLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLNELIDRGFIQVK 377 (422)
Q Consensus 298 ~~~~~~i~~~~~~l~~sy~~Lp~~~k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~r~ll~~~ 377 (422)
......+ ..+ +.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++++|++|+++|||+..
T Consensus 358 ~~~~~~~-~~~--l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 358 SYDYEAL-DEA--MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CTTHHHH-HHH--HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEE
T ss_pred ccchHHH-HHH--HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEe
Confidence 1223467 888 9999999999999999999999999999999999999775 68899999999999999976
Q ss_pred ecCCCCceeeEEcCHHHHHHHHHhchhc
Q 042081 378 KRRAGGTIKACYVPTFAYVALLLPAALT 405 (422)
Q Consensus 378 ~~~~~g~~~~~~~Hdlv~~~a~~~~~~~ 405 (422)
. +|+..+|+|||+||+||+.++.++
T Consensus 428 ~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 R---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp E---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred c---CCCceEEEecHHHHHHHHhhhhHH
Confidence 5 344568999999999999987755
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.3e-37 Score=325.85 Aligned_cols=255 Identities=15% Similarity=0.119 Sum_probs=202.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce-eEEEEeCCCCCHHHHHHHHHHHhCCC-
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC-HAWVRVSIAYNFRMILDDIIKSVMPP- 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~- 186 (422)
||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..++..
T Consensus 132 GRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 132 SRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 99999999999998743 3899999999999999999999998888999986 99999999999888888877754321
Q ss_pred --CCCCcc----CCCCHHHHHHHHHHhc---CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhc
Q 042081 187 --SRVSVV----IGEDYQLKKSILRDYL---TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 187 --~~~~~~----~~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~ 257 (422)
...... ...+.+++...++..| .+||+|||||||| +.+.|+.+. +||+||||||++.++..+
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw--d~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC--CHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC--hHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 110000 0024456677777766 7899999999999 888887652 589999999999987532
Q ss_pred ccC--CCCC------cc----------------------------c-hHHHhhhhccCCChH--HHHHHHHHhccccccc
Q 042081 258 DLE--NGQT------IH----------------------------P-DSVLVGGPLIRLKHE--AWQFFILHYGKTTLRI 298 (422)
Q Consensus 258 ~~~--~~~~------~~----------------------------P-ai~~~g~~L~~~~~~--~w~~~~~~~~~~~~~~ 298 (422)
... .... .+ | ||+++|+.|+.+... .|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV----------- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-----------
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-----------
Confidence 211 0000 11 9 999999999988532 78653
Q ss_pred ccchhhhhhhhhHhhhhcCCchhh-HHHHHHhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCceeee
Q 042081 299 YMGEKAFLTAWSTIYSVLELPVHL-KICCLYLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLNELIDRGFIQVK 377 (422)
Q Consensus 299 ~~~~~i~~~~~~l~~sy~~Lp~~~-k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~r~ll~~~ 377 (422)
....+ ..+ |.+||+.||++. |.||+|||+||+++.|+.+.|+.+|+++| ++.++.+|++|+++|||+..
T Consensus 351 -~~~~I-~aa--LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 351 -NCDKL-TTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp -SCHHH-HHH--HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC
T ss_pred -ChhHH-HHH--HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe
Confidence 12467 788 999999999999 99999999999999999999999999987 34689999999999999984
Q ss_pred ecCCCCceeeEEcCHHHHHHHH
Q 042081 378 KRRAGGTIKACYVPTFAYVALL 399 (422)
Q Consensus 378 ~~~~~g~~~~~~~Hdlv~~~a~ 399 (422)
. ...+|+|||++++++.
T Consensus 421 ~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 421 P-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp S-----SSSEEBCCCHHHHHHH
T ss_pred C-----CCCEEEehHHHHHHhc
Confidence 2 2257999999999653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=291.79 Aligned_cols=269 Identities=19% Similarity=0.250 Sum_probs=205.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCc-cCCc-ceeEEEEeCCCCCHHHHHH---HHHHHh
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHV-KFYF-DCHAWVRVSIAYNFRMILD---DIIKSV 183 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~---~il~~l 183 (422)
||+.++++|.++|.....+.++|+|+||||+||||||..++++.++ ..+| +.++|++++.. +...++. .++..+
T Consensus 128 GR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l 206 (591)
T 1z6t_A 128 TRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRL 206 (591)
T ss_dssp CCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHh
Confidence 9999999999999865556899999999999999999999996555 7789 47999999876 3333333 344455
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhcCC--ceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcccCC
Q 042081 184 MPPSRVSVVIGEDYQLKKSILRDYLTN--KKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFDLEN 261 (422)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~~~~ 261 (422)
+...........+.+.+...+...+.+ +++||||||+| +...+. .+ .+||+||||||+..++..+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~--~~~~l~----~l---~~~~~ilvTsR~~~~~~~~~~~~ 277 (591)
T 1z6t_A 207 DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLK----AF---DSQCQILLTTRDKSVTDSVMGPK 277 (591)
T ss_dssp CSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC--CHHHHH----TT---CSSCEEEEEESCGGGGTTCCSCE
T ss_pred ccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC--CHHHHH----Hh---cCCCeEEEECCCcHHHHhcCCCc
Confidence 532111111235778888889888876 78999999999 765543 23 45899999999998876543110
Q ss_pred -CC----Ccc---------------------------------c-hHHHhhhhccCCChHHHHHHHHHhcccccc-----
Q 042081 262 -GQ----TIH---------------------------------P-DSVLVGGPLIRLKHEAWQFFILHYGKTTLR----- 297 (422)
Q Consensus 262 -~~----~~~---------------------------------P-ai~~~g~~L~~~~~~~w~~~~~~~~~~~~~----- 297 (422)
.. .+. | ||+.+|+.|+..+. .|..+++.+......
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~-~w~~~l~~l~~~~~~~~~~~ 356 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKS 356 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT-CHHHHHHHHHSCCCCCSSCC
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch-hHHHHHHHHHHhHHHHhhhc
Confidence 00 010 9 99999999987753 688888777533211
Q ss_pred -cccchhhhhhhhhHhhhhcCCchhhHHHHHHhhhcCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCceee
Q 042081 298 -IYMGEKAFLTAWSTIYSVLELPVHLKICCLYLCLFHPGIEISTRQLYWLWVAEGFIPHNSEETAEHYLNELIDRGFIQV 376 (422)
Q Consensus 298 -~~~~~~i~~~~~~l~~sy~~Lp~~~k~cfl~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~e~~~~~~l~~Lv~r~ll~~ 376 (422)
......+ ..+ +..||+.||++.|.||++||+||+++.|+.+.|+.+|.++ .+.+..++++|+++|||+.
T Consensus 357 ~~~~~~~l-~~~--l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 357 SSYDYEAL-DEA--MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp CSSCCHHH-HHH--HHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEE
T ss_pred cccchHHH-HHH--HHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEE
Confidence 1223467 778 9999999999999999999999999999999999999764 5678999999999999996
Q ss_pred eecCCCCceeeEEcCHHHHHHHHHh
Q 042081 377 KKRRAGGTIKACYVPTFAYVALLLP 401 (422)
Q Consensus 377 ~~~~~~g~~~~~~~Hdlv~~~a~~~ 401 (422)
... |...+|+||++||+|++..
T Consensus 427 ~~~---~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 427 DRN---GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEE---TTEEEEECCHHHHHHHHHH
T ss_pred ecC---CCccEEEEcHHHHHHHHhh
Confidence 542 3446899999999999987
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=4.7e-12 Score=124.78 Aligned_cols=140 Identities=22% Similarity=0.155 Sum_probs=94.9
Q ss_pred hhhhhHHHHHHHH-hcC--C--CCceEEEE--EcCCCCCHHHHHHHHHcCCCccCC-----cc-eeEEEEeCCCCCHHHH
Q 042081 109 EFESGREELFDLL-IEG--Q--PQLSVVAI--LDSSGFDKTAFAADTYNNNHVKFY-----FD-CHAWVRVSIAYNFRMI 175 (422)
Q Consensus 109 Gr~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~~~-----F~-~~~wv~vs~~~~~~~~ 175 (422)
||+.++++|.++| ... . .....+.| +|++|+|||||++.+++. .... |+ ..+|++.....+...+
T Consensus 26 gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (412)
T 1w5s_A 26 VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNLYTI 103 (412)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSHHHH
T ss_pred ChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCHHHH
Confidence 9999999999998 421 1 23556666 999999999999999983 3321 23 2577777677788899
Q ss_pred HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCC------ChhHHHHHHhhcCC-C--C--CCc
Q 042081 176 LDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEE------SDDVLDDLEEVLPE-N--Q--NGS 242 (422)
Q Consensus 176 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~~~l~~~l~~-~--~--~gs 242 (422)
+..++.+++..... ...+..++...+...+. +++++|||||++.- +.+.+..+...+.. . + ...
T Consensus 104 ~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 104 LSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999764321 12445666777777765 67999999999731 12444444443321 1 2 345
Q ss_pred EEEEeecChhH
Q 042081 243 RVLMTVTDPDF 253 (422)
Q Consensus 243 ~ilvTTR~~~v 253 (422)
.||+||+...+
T Consensus 181 ~lI~~~~~~~~ 191 (412)
T 1w5s_A 181 GFLLVASDVRA 191 (412)
T ss_dssp EEEEEEEETHH
T ss_pred EEEEEeccccH
Confidence 58888876553
No 6
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=2.1e-09 Score=104.74 Aligned_cols=288 Identities=15% Similarity=0.090 Sum_probs=162.6
Q ss_pred hhhhhHHHHHHHHhcC----CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc-ceeEEEEeCCCCCHHHHHHHHHHHh
Q 042081 109 EFESGREELFDLLIEG----QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCHAWVRVSIAYNFRMILDDIIKSV 183 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~il~~l 183 (422)
||+.+++.|..++... .+..+.+.|+|.+|+|||||++.+++. ..... -..++++.+...+...++..++..+
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 9999999999998762 222348999999999999999999983 33321 2356777777778889999999988
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCCChhHHHHHHhhcCCCC----CCcEEEEeecChhHhhhc
Q 042081 184 MPPSRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEESDDVLDDLEEVLPENQ----NGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTTR~~~va~~~ 257 (422)
+..... ...+...+...+...+. +++.+||||++..-+......+...+.... .+..||++|+.......+
T Consensus 99 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 99 NIPFPR---RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCCCS---SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CccCCC---CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 654321 12456666666666664 568999999997545666777766664311 367788888776433222
Q ss_pred ccC-----C--CCCcc-------------------------c-hHHHhhhhccC-------CChH-HHHHHHHHhcccc-
Q 042081 258 DLE-----N--GQTIH-------------------------P-DSVLVGGPLIR-------LKHE-AWQFFILHYGKTT- 295 (422)
Q Consensus 258 ~~~-----~--~~~~~-------------------------P-ai~~~g~~L~~-------~~~~-~w~~~~~~~~~~~- 295 (422)
... . ...+. | ++..+...-.. ..+. ....++.......
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 110 0 00111 2 33333332210 0111 1111111110000
Q ss_pred --c-ccccchhhhhhhh-----h-HhhhhcCCchhhHHHHHHhhhcC---CCceechhHHHHHHHH----cCCCCCChHH
Q 042081 296 --L-RIYMGEKAFLTAW-----S-TIYSVLELPVHLKICCLYLCLFH---PGIEISTRQLYWLWVA----EGFIPHNSEE 359 (422)
Q Consensus 296 --~-~~~~~~~i~~~~~-----~-l~~sy~~Lp~~~k~cfl~ls~Fp---~~~~i~~~~Li~~W~a----eg~i~~~~e~ 359 (422)
. ..-..+.+ ..+. + +.-.+..||.+.+.++..++.+. .+..+....+...+.. .|...- ...
T Consensus 256 ~~~~~~i~~~~v-~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 333 (389)
T 1fnn_A 256 QNGRKHIAPEDV-RKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR-VHS 333 (389)
T ss_dssp HTTCSSCCHHHH-HHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC-CHH
T ss_pred HhCCCCcCHHHH-HHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC-CHH
Confidence 0 00001111 1110 0 33345678888888887777654 2225666666655533 232221 356
Q ss_pred HHHHHHHHHHHCCceeeeec----CCCCceeeEEc----CHHHHHHHHHhch
Q 042081 360 TAEHYLNELIDRGFIQVKKR----RAGGTIKACYV----PTFAYVALLLPAA 403 (422)
Q Consensus 360 ~~~~~l~~Lv~r~ll~~~~~----~~~g~~~~~~~----Hdlv~~~a~~~~~ 403 (422)
...+++++|.+.++|..... +..|+...+++ |+++..+...+..
T Consensus 334 ~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 334 QLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 67889999999999998654 23344444444 4666666554443
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.24 E-value=3.8e-10 Score=108.31 Aligned_cols=133 Identities=10% Similarity=0.088 Sum_probs=86.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC------CHHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY------NFRMILDDIIKS 182 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~il~~ 182 (422)
||+.+++.|.+++..+ +++.|+|++|+|||||++++++.. + .+|+.+.... +...++..+...
T Consensus 16 gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 16 DREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp SCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHH
Confidence 9999999999998763 689999999999999999999842 1 6677664332 556666666665
Q ss_pred hCCC--------------CCCCccCCCCHHHHHHHHHHhcCC-ceEEEEEeCCCCCC-------hhHHHHHHhhcCCCCC
Q 042081 183 VMPP--------------SRVSVVIGEDYQLKKSILRDYLTN-KKYFIVLDDYCEES-------DDVLDDLEEVLPENQN 240 (422)
Q Consensus 183 l~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-------~~~~~~l~~~l~~~~~ 240 (422)
+... .........+..++...+...+.. ++++|||||++.-+ ...+..+...+.. ..
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~ 163 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LP 163 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CT
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cC
Confidence 5430 000000114566677777666653 38999999997311 2233433333222 24
Q ss_pred CcEEEEeecChhH
Q 042081 241 GSRVLMTVTDPDF 253 (422)
Q Consensus 241 gs~ilvTTR~~~v 253 (422)
+.++|+|++....
T Consensus 164 ~~~~il~g~~~~~ 176 (350)
T 2qen_A 164 NLKIILTGSEVGL 176 (350)
T ss_dssp TEEEEEEESSHHH
T ss_pred CeEEEEECCcHHH
Confidence 6889999987654
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=1.8e-09 Score=103.70 Aligned_cols=133 Identities=13% Similarity=0.094 Sum_probs=80.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-----CCHHHHHHHHHHHh
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-----YNFRMILDDIIKSV 183 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~il~~l 183 (422)
||+++++.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+..... .+...++..+...+
T Consensus 17 gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 17 DREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp CCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 99999999999 643 59999999999999999999884 322 2578876642 34444444444332
Q ss_pred C-------------CCC-CCCcc-----------CCCCHHHHHHHHHHhcCCceEEEEEeCCCCCC---hhHHHHHHhhc
Q 042081 184 M-------------PPS-RVSVV-----------IGEDYQLKKSILRDYLTNKKYFIVLDDYCEES---DDVLDDLEEVL 235 (422)
Q Consensus 184 ~-------------~~~-~~~~~-----------~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~~~~l~~~l 235 (422)
. ... ....+ .......+...+.+... ++++|||||++.-+ ...|..+...+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~ 164 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYA 164 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHH
Confidence 1 000 00000 12355666666665543 49999999996311 11222222222
Q ss_pred CCCCCCcEEEEeecChhH
Q 042081 236 PENQNGSRVLMTVTDPDF 253 (422)
Q Consensus 236 ~~~~~gs~ilvTTR~~~v 253 (422)
.....+.++|+|++....
T Consensus 165 ~~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 165 YDNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp HHHCTTEEEEEEESSHHH
T ss_pred HHcCCCeEEEEEcCchHH
Confidence 221236789999998654
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.13 E-value=1.2e-08 Score=99.25 Aligned_cols=138 Identities=17% Similarity=0.058 Sum_probs=92.8
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc-----c-eeEEEEeCCCCCHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-----D-CHAWVRVSIAYNFRMILDDII 180 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~-~~~wv~vs~~~~~~~~~~~il 180 (422)
||+.+++.|..+|... ......+.|+|++|+||||||+.+++ .....+ . ..+|++.....+...++..++
T Consensus 23 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 100 (387)
T 2v1u_A 23 HREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIA 100 (387)
T ss_dssp TCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHH
Confidence 9999999999998543 33467889999999999999999998 332211 2 356777777788889999999
Q ss_pred HHhCCCCCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCCCh-----hHHHHHHhhcCCC--CCCcEEEEeecCh
Q 042081 181 KSVMPPSRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEESD-----DVLDDLEEVLPEN--QNGSRVLMTVTDP 251 (422)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~-----~~~~~l~~~l~~~--~~gs~ilvTTR~~ 251 (422)
.+++..... ...+..++...+...+. +++.+||||++..-.. +.+..+....... ..+..+|.||+..
T Consensus 101 ~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 101 EAVGVRVPF---TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHSCCCCS---SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHhCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 999654321 12456676777777774 5689999999972111 1222222222111 3456778888765
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=6.2e-09 Score=101.36 Aligned_cols=135 Identities=16% Similarity=0.014 Sum_probs=93.2
Q ss_pred hhhhhHHHHHHHHhc--CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC--------cceeEEEEeCCCC-CHHHHHH
Q 042081 109 EFESGREELFDLLIE--GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY--------FDCHAWVRVSIAY-NFRMILD 177 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~~~~~ 177 (422)
||++++++|.++|.. .....+.+.|+|++|+||||||+.+++ ..... ....+|++..... +...++.
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 101 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLS 101 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHH
Confidence 999999999988865 233467899999999999999999998 33211 2236677766666 8888889
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCC----hhH-HHHHHhhcCCCCCCcEEEEeecCh
Q 042081 178 DIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEES----DDV-LDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 178 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~-~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.++..+.+.... ....+...+...+...+..++.+||||+++.-. .+. +..+.... .+..||+||+..
T Consensus 102 ~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 102 SLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred HHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence 999888433211 112455677788888888776699999996211 111 22232222 578899999875
No 11
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.85 E-value=5.6e-09 Score=83.44 Aligned_cols=61 Identities=7% Similarity=0.164 Sum_probs=42.9
Q ss_pred ccCChHHHHHHHHHHHHHhhHHHHHHhhhhhhhcccCCCCcchhhHhhHHHHHHHHHHHHHH
Q 042081 13 NVKRTDIWELLKDINYFVRESEKAIDTFFINITQQQNSESESTTCIALLVGIHSKIIDIRNR 74 (422)
Q Consensus 13 ~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~r 74 (422)
+.++++++.|+++||++|||+|||||+|.++........ ....+..++++++..++.++.|
T Consensus 51 ~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~~~~~~-~~~g~~~~~~k~~~~~~~~~~r 111 (115)
T 3qfl_A 51 EQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDGIKSDD-NNNKFKGLMKRTTELLKKVKHK 111 (115)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc-ccchHHHHHHHHHHHHhhhHHh
Confidence 568999999999999999999999999999876532111 1123344446666666666554
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.78 E-value=1e-08 Score=99.59 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=93.6
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc---ceeEEEEeCCCCCHHHHHHHHHHHh
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DCHAWVRVSIAYNFRMILDDIIKSV 183 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~il~~l 183 (422)
||+.+++.|.+++... ......+.|+|++|+|||||++.+++ .....+ ...+|++.....+...++..++..+
T Consensus 24 gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l 101 (386)
T 2qby_A 24 HREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESL 101 (386)
T ss_dssp TCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999998752 33467899999999999999999998 343332 1356777666667778888888877
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhcC--CceEEEEEeCCCCC----ChhHHHHHHhhcCC-CCCCcEEEEeecChhH
Q 042081 184 MPPSRVSVVIGEDYQLKKSILRDYLT--NKKYFIVLDDYCEE----SDDVLDDLEEVLPE-NQNGSRVLMTVTDPDF 253 (422)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~----~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~v 253 (422)
+..... ...+..++...+...+. +++.+||||+++.- +.+.+..+...+.. ...+..+|+||+....
T Consensus 102 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 102 DVKVPF---TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp SCCCCS---SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 553221 12345666666666664 45899999998621 13344445444321 2335667888887643
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.69 E-value=5.6e-08 Score=86.40 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-Ccce-eEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDC-HAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|++..++.|.+++.... .+.+.|+|.+|+|||+||+.+++ .... .+.. .+.+..+.......+
T Consensus 21 g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------- 85 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVV----------- 85 (226)
T ss_dssp SCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHH-----------
T ss_pred CcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHH-----------
Confidence 99999999999998754 33489999999999999999987 3222 2221 233333332222222
Q ss_pred CCCCccCCCCHHHHHHHHHHhc------CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 187 SRVSVVIGEDYQLKKSILRDYL------TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L------~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
...+.... .+++.+||+||++.-....++.+...+.....+..+|+||+..
T Consensus 86 --------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 86 --------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp --------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred --------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 22222221 2578899999997545566666766665445577899998765
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.66 E-value=1.2e-07 Score=85.23 Aligned_cols=136 Identities=14% Similarity=0.077 Sum_probs=75.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
||+..++.|..++..+. ....+.|+|.+|+||||||+.+++. ....+... ......... ...+.........
T Consensus 27 g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~ 98 (250)
T 1njg_A 27 GQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGIT----ATPCGVCDN-CREIEQGRFVDLI 98 (250)
T ss_dssp SCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSC----SSCCSCSHH-HHHHHTTCCSSEE
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC----CCCCcccHH-HHHHhccCCcceE
Confidence 99999999999997653 2458899999999999999999873 22111000 000000000 0011100000000
Q ss_pred C-CccCCCCHHHHHHHHHHh----cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChh
Q 042081 189 V-SVVIGEDYQLKKSILRDY----LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPD 252 (422)
Q Consensus 189 ~-~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 252 (422)
. ..........+...+... ..+++.+||+||++.-+...++.+...+.....+..+|+||+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 99 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0 000001122222222222 135689999999974467778888777765556788999987643
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=4.4e-07 Score=85.80 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=72.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-Ccc-eeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFD-CHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|++..++.|.+++..+. .+.+.|+|++|+||||+|+.+++ .+.. .+. ..+++..+...... .+++++..+...
T Consensus 25 g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~ 99 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGID-VVRNQIKHFAQK 99 (323)
T ss_dssp SCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHH-HHHTHHHHHHHB
T ss_pred CCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChH-HHHHHHHHHHhc
Confidence 99999999999998754 33388999999999999999987 3321 121 13333333222211 111122111100
Q ss_pred CCCCccCCCCHHHHHHHHHHhc-CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 187 SRVSVVIGEDYQLKKSILRDYL-TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
. ..+ .+++.+||+||++.-....++.+...+.....++.+|+||...
T Consensus 100 ~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 100 K------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp C------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred c------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 0 011 4568899999997444556666665554444567888888764
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.34 E-value=1.3e-06 Score=82.73 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|++..++.+..++... ......+.|+|.+|+|||+||+.+++
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 9998888888877531 22346788999999999999999987
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.8e-06 Score=80.06 Aligned_cols=108 Identities=7% Similarity=0.034 Sum_probs=74.9
Q ss_pred hhhhhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-----Ccc--eeEEEEeCCCCCHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-----YFD--CHAWVRVSIAYNFRMILDDI 179 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----~F~--~~~wv~vs~~~~~~~~~~~i 179 (422)
||++++++|...|... ....+.+-|+|++|.|||++++.+++. +.. ..+ ..+.++...-.+...++..|
T Consensus 24 ~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 24 SQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 9999999999888763 345778899999999999999999984 321 111 24556655667888999999
Q ss_pred HHHhCCCCCCCccCCCCHHHHHHHHHHh--cCCceEEEEEeCCC
Q 042081 180 IKSVMPPSRVSVVIGEDYQLKKSILRDY--LTNKKYFIVLDDYC 221 (422)
Q Consensus 180 l~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv~ 221 (422)
++++.+... +.......+...+... -.+++++|+||.+.
T Consensus 102 ~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d 142 (318)
T 3te6_A 102 WFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPE 142 (318)
T ss_dssp HHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCS
T ss_pred HHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHH
Confidence 999976532 1123444444444442 24578999999986
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=1.3e-06 Score=82.72 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=72.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC-cc-eeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY-FD-CHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|++..++.|..++..+. .+.+.++|++|+||||+|+.+++ .+... +. ..+.+..+..... ..+...+
T Consensus 29 g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~------ 97 (327)
T 1iqp_A 29 GQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGI-NVIREKV------ 97 (327)
T ss_dssp SCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHH-HTTHHHH------
T ss_pred CCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCch-HHHHHHH------
Confidence 99999999999988764 34489999999999999999987 32211 11 1223322211000 0011111
Q ss_pred CCCCccCCCCHHHHHHHHHHh--c-CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 187 SRVSVVIGEDYQLKKSILRDY--L-TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
...... + .+++.+||+|+++.-....++.+...+.....++++|+||...
T Consensus 98 ---------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 98 ---------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp ---------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ---------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 111111 1 2567899999997555666777776665445578888888764
No 19
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.02 E-value=7.9e-06 Score=70.44 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=35.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
||++.++++.+.+.... ...+.|+|.+|+|||+||+.+++.
T Consensus 26 g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 99999999999987743 556789999999999999999873
No 20
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.98 E-value=4.1e-06 Score=73.64 Aligned_cols=120 Identities=15% Similarity=0.053 Sum_probs=64.5
Q ss_pred hhhhhHHHHHHHHhcCCCC--ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQ--LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
++...++.+.+++...... ...+.|+|.+|+|||+||+.+++ .........++++. ..+...+......
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~- 103 (202)
T 2w58_A 33 GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRELKHSLQD- 103 (202)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHHHHHhcc-
Confidence 5556667777777654322 26888999999999999999998 33333334556543 3444444432211
Q ss_pred CCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHH--HHh-hcCC-CCCCcEEEEeecC
Q 042081 187 SRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDD--LEE-VLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~--l~~-~l~~-~~~gs~ilvTTR~ 250 (422)
.........+.. .-+|||||++......|.. +.. .+.. ...+.++|+||..
T Consensus 104 --------~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --------QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --------CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --------chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 122233333332 2399999996432322211 111 1111 0235578888875
No 21
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.96 E-value=2.2e-05 Score=65.18 Aligned_cols=110 Identities=10% Similarity=-0.067 Sum_probs=64.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCc-cCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
|+...+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ...| + +..+.-.+.
T Consensus 5 G~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~--------------- 65 (145)
T 3n70_A 5 GRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA--------------- 65 (145)
T ss_dssp CSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS---------------
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc---------------
Confidence 6777788888777542222344679999999999999999984211 2222 2 443322111
Q ss_pred CCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 188 RVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
... ...+... ..-.|+||++..-..+....+...+.......++|.||..
T Consensus 66 -------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 000 1111111 1236899999755666666676666444445678777765
No 22
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.92 E-value=1.5e-05 Score=68.67 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=66.4
Q ss_pred hhhhhHHHHHHHHhcCC-CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 109 EFESGREELFDLLIEGQ-PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
+....++.+.+++..-. .....+.|+|.+|+|||||++.+++.......+. .+++ +..++...+........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCch
Confidence 56666777776665432 2357899999999999999999987321011221 2233 34445544444332211
Q ss_pred CCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHH--HHHHhhcCC-CCCCcEEEEeecCh
Q 042081 188 RVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVL--DDLEEVLPE-NQNGSRVLMTVTDP 251 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTTR~~ 251 (422)
. . .....+. +.-+||||++.....+.| ..+...+.. ...|..+|+||...
T Consensus 91 ~-------~--~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 D-------T--KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp C-------S--HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred H-------H--HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 1 2222222 456899999973222233 233322221 12467788888764
No 23
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.91 E-value=5.3e-05 Score=72.97 Aligned_cols=135 Identities=16% Similarity=0.050 Sum_probs=73.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC-
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPS- 187 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~- 187 (422)
|++..++.|...+..+. ....+.|+|..|+||||+|+.+.+.......+. ..++........+........
T Consensus 20 g~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
T 1jr3_A 20 GQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRFVDLI 91 (373)
T ss_dssp SCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCCSSCE
T ss_pred CcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCCCceE
Confidence 99999999999997653 245788999999999999999987321111110 000000001111110000000
Q ss_pred ---CCCccCCCCHHHHHHHHHHh-cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 188 ---RVSVVIGEDYQLKKSILRDY-LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 188 ---~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
...........++...+... ..+++.+||+|++..-+...++.+...+.....+..+|++|...
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 92 EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp EEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00000012333333322211 13567899999997545666777777665444567778777654
No 24
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.85 E-value=9.4e-06 Score=76.39 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=71.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCc-cCCcc-eeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHV-KFYFD-CHAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|++..++.|.+++..+. .+.+.++|.+|+|||++|+.+++. + ...+. ..+.++.+.....
T Consensus 21 g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-------------- 82 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI-------------- 82 (319)
T ss_dssp SCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCT--------------
T ss_pred CCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccCh--------------
Confidence 99999999988887653 333889999999999999999873 2 11111 1223333221110
Q ss_pred CCCCccCCCCHHHHHHHHHHh--c-CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 187 SRVSVVIGEDYQLKKSILRDY--L-TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
....+....+... + .+++.+||+|++..-.....+.+...+.....++.+|+||...
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 1111111111111 1 2567899999997445566677777766555577888888664
No 25
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.79 E-value=1.8e-05 Score=65.51 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=61.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++... -++.+.-..-......
T Consensus 8 G~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~~----------- 68 (143)
T 3co5_A 8 GNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMPM----------- 68 (143)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCHH-----------
T ss_pred eCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhhh-----------
Confidence 777777777777654211223467999999999999999987322 2233322111111111
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCC-CCCcEEEEeecC
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPEN-QNGSRVLMTVTD 250 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTR~ 250 (422)
.+..... .-.|+||++..-..+....+...+... ..+.++|.||..
T Consensus 69 --------------~~~~~a~--~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 69 --------------ELLQKAE--GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------HHHHHTT--TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------hHHHhCC--CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 236889999755566666666555422 235678877754
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.78 E-value=2.6e-05 Score=72.37 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=34.8
Q ss_pred hhhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEG-----------QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..+++|.+.+... -....-+.|+|.+|+|||+||+.+++.
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 9999999998877431 123556889999999999999999983
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.72 E-value=6.2e-05 Score=70.56 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=65.1
Q ss_pred hhhhhHHHHHHHHhc-------------CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHH
Q 042081 109 EFESGREELFDLLIE-------------GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMI 175 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 175 (422)
|.+..++.|.+.+.. .......+.|+|.+|+|||+||+.+++.-.........-++.++..
T Consensus 35 G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------ 108 (309)
T 3syl_A 35 GLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------ 108 (309)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------
Confidence 777777777665531 1233557889999999999999987762111111111123333311
Q ss_pred HHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCC---------CChhHHHHHHhhcCCCCCCcEEEE
Q 042081 176 LDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCE---------ESDDVLDDLEEVLPENQNGSRVLM 246 (422)
Q Consensus 176 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~---------~~~~~~~~l~~~l~~~~~gs~ilv 246 (422)
.+..... +.....+...+... +..+|++|++.. ........+...+.....+..||+
T Consensus 109 ------~l~~~~~-----g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ------DLVGQYI-----GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ------GTCCSST-----TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ------Hhhhhcc-----cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111100 01222222333322 234999999962 144555666666554445667788
Q ss_pred eecCh
Q 042081 247 TVTDP 251 (422)
Q Consensus 247 TTR~~ 251 (422)
||...
T Consensus 175 ~~~~~ 179 (309)
T 3syl_A 175 AGYAD 179 (309)
T ss_dssp EECHH
T ss_pred eCChH
Confidence 77654
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.67 E-value=0.00066 Score=64.38 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|++..++.+..++... ......|.|+|.+|+|||+||+.+.+
T Consensus 33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 9999999988888752 33456688999999999999999987
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.65 E-value=6.7e-05 Score=74.30 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=65.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcce--eEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDC--HAWVRVSIAYNFRMILDDIIKSVMPPSRVS 190 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il~~l~~~~~~~ 190 (422)
....+......... ...+.|+|.+|+||||||+.+++ .....|+. .++++ ...+..++...+...
T Consensus 116 a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~------~~~~~~~~~~~~~~~---- 182 (440)
T 2z4s_A 116 AYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLVDSMKEG---- 182 (440)
T ss_dssp HHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE------HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHcc----
Confidence 34444444444332 67889999999999999999998 44333322 34443 233444444444321
Q ss_pred ccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCCh--hHHHHHHhhcCC-CCCCcEEEEeecC
Q 042081 191 VVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESD--DVLDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 191 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
.. ..+...+..+.-+|+|||+..-.. ...+.+...+.. ...|..||+||.+
T Consensus 183 -----~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 183 -----KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp -----CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred -----cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 11 123334444567999999963221 233334333321 1346789999876
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.64 E-value=0.00013 Score=68.90 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=70.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR 188 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 188 (422)
|.+..++.|.+++..+. ...++.+.|.+|+|||++|+.+.+. ... ..+.++.+. .. ...++.++.......
T Consensus 30 g~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~-~~~i~~~~~~~~~~~- 100 (324)
T 3u61_B 30 LPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CK-IDFVRGPLTNFASAA- 100 (324)
T ss_dssp CCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CC-HHHHHTHHHHHHHBC-
T ss_pred CcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cC-HHHHHHHHHHHHhhc-
Confidence 99999999999998653 3467888899999999999999883 321 233444332 12 112222111110000
Q ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCC-hhHHHHHHhhcCCCCCCcEEEEeecChh
Q 042081 189 VSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEES-DDVLDDLEEVLPENQNGSRVLMTVTDPD 252 (422)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 252 (422)
...+++.+|++|++..-. .+..+.+...+.....+..+|+||....
T Consensus 101 ------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 101 ------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp ------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred ------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 012467899999997433 4455555555433234678888887643
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.51 E-value=0.00095 Score=64.04 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=33.3
Q ss_pred hhhhhHHH---HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREE---LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|++..++. +...+..+......+.|+|++|+|||+||+.+.+.
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 88877665 55555555433468899999999999999999983
No 32
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00035 Score=66.74 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.+.+++........ +.|+|..|+||||+++.+..
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence 888888888888733322233 89999999999999998876
No 33
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.00011 Score=70.23 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC--Ccc-eeEEEEeCCCCCHHHHHHHHHHHhCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF--YFD-CHAWVRVSIAYNFRMILDDIIKSVMP 185 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~-~~~wv~vs~~~~~~~~~~~il~~l~~ 185 (422)
|+++.++.|..++..+. ...+.|+|.+|+||||+|+.+.+. +.. .+. ....+..+....... +.+.+..+..
T Consensus 41 g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 115 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE--LYGPDLMKSRILELNASDERGISI-VREKVKNFAR 115 (353)
T ss_dssp SCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH--HHHHHHHTTSEEEECSSSCCCHHH-HTTHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH--hCCCcccccceEEEccccccchHH-HHHHHHHHhh
Confidence 99999999999987754 223889999999999999999873 211 111 122233333222222 2222211111
Q ss_pred CCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 186 PSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.... ..... .....-.+++-+|++|++..-.......+...+.......++|++|...
T Consensus 116 ~~~~---~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 116 LTVS---KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp SCCC---CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred hccc---ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 0000 00000 0011112456799999986445555666666554434456788877543
No 34
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.49 E-value=0.00098 Score=63.29 Aligned_cols=133 Identities=10% Similarity=0.021 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-
Q 042081 111 ESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV- 189 (422)
Q Consensus 111 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~- 189 (422)
++..+.+...+..+. -...+.++|..|+|||++|+.+.+. +....... ......-.....+...-......
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~-----~~~c~~c~~c~~~~~~~~~d~~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY--LLCQQPQG-----HKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBT-----TBCCSCSHHHHHHHHTCCTTEEEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH--HhCCCCCC-----CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 445566666666543 3557889999999999999998763 11110000 00000000001111000000000
Q ss_pred Cc---cCCCCHHHHHHHHHHhc----CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 190 SV---VIGEDYQLKKSILRDYL----TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 190 ~~---~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.. ......+++...+...- .+++-++|+|++..-+.+..+.+...+-....++.+|++|.+.
T Consensus 80 ~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 80 APEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp CCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred eccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 00 00123333333222221 2567899999997545666677777776545567777777764
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.47 E-value=0.00044 Score=63.53 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.....+.|+|.+|+|||+||+.+++.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35678899999999999999999983
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.46 E-value=0.00019 Score=65.35 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHh---cCC-------CCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLI---EGQ-------PQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|.+++. ... ...+-+.|+|.+|+|||++|+.+++
T Consensus 10 G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 10 GMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp SCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 77777666655442 211 2345678999999999999999998
No 37
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00066 Score=63.62 Aligned_cols=119 Identities=7% Similarity=-0.035 Sum_probs=70.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC-Ccc-CCcceeEEEEeCC-CCCHHHHHHHHHHHhCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNN-HVK-FYFDCHAWVRVSI-AYNFRMILDDIIKSVMP 185 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~ 185 (422)
|-++.++.|.+.+..+. ...+.++|+.|+||||+|..+.+.. ... .+.+ ...+..+. ...+.. .+++.+.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhh
Confidence 34556677777777655 6789999999999999999997630 111 1222 34444332 222222 2333333322
Q ss_pred CCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 186 PSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.. ..+++-++|+|++..-+....+.++..+-.....+.+|++|.+.
T Consensus 77 ~p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 77 SP--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp CC--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cc--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 11 12456789999997556667777777775545577888877553
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.43 E-value=0.0014 Score=61.93 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHHHhc---------C-CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE---------G-QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.|.+.+.. + ....+-|.++|++|+|||+||+.+++.
T Consensus 16 G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 16 GLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 888888888776631 1 123467889999999999999999983
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.42 E-value=3.1e-05 Score=69.44 Aligned_cols=53 Identities=4% Similarity=-0.042 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeC
Q 042081 111 ESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVS 167 (422)
Q Consensus 111 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 167 (422)
+..++.+..++... ....+.|+|.+|+||||||+.+++ ..........+++.+
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 45556666665543 356788999999999999999987 333222235566543
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.42 E-value=0.00022 Score=67.50 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHh----------cCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLI----------EGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|.+.+. ......+-+.++|.+|+|||+||+.+++
T Consensus 22 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 22 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp SCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 89999998888773 1122345788999999999999999998
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.40 E-value=0.0003 Score=66.48 Aligned_cols=116 Identities=12% Similarity=0.033 Sum_probs=59.9
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCcc
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVV 192 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~ 192 (422)
....+..++.........+.|+|++|+||||||+.+++. ....-...++++ ...+...+...+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~------~~~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSS------ADDFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEE------HHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE------HHHHHHHHHHHHHcC------
Confidence 344455555444334567889999999999999999883 311101234443 233333443333211
Q ss_pred CCCCHHHHHHHHHHhcCCceEEEEEeCCCCCCh--hHHHHHHhhcCC-CCCCcEEEEeecC
Q 042081 193 IGEDYQLKKSILRDYLTNKKYFIVLDDYCEESD--DVLDDLEEVLPE-NQNGSRVLMTVTD 250 (422)
Q Consensus 193 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTR~ 250 (422)
..... ...+. +..+|++|++..-.. ...+.+...+.. ...|..||+||..
T Consensus 88 ---~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 88 ---TINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp ---CHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ---cHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 11122 22222 356999999863222 223333333221 1235678888864
No 42
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.39 E-value=0.00089 Score=59.03 Aligned_cols=89 Identities=10% Similarity=0.004 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--------CCccCCCCHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR--------VSVVIGEDYQ 198 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--------~~~~~~~~~~ 198 (422)
.-.++.|+|.+|+|||||+..+.. . .=..++|++....++...+.. ++..++.... .......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 356999999999999999999987 1 113577887776556655443 3333322100 0001112233
Q ss_pred HHHHHHHHhcCCceEEEEEeCCC
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
+....++..+..+.-+||+|..-
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 45555666665567799999875
No 43
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=7.4e-05 Score=62.33 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-..+.|+|..|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999873
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.33 E-value=0.0017 Score=60.72 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..+++|.+++.. +-.....+.|+|.+|+|||+||+.+++.
T Consensus 19 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 19 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 888888888777642 1123567899999999999999999983
No 45
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.00057 Score=65.02 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=66.0
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-Ccce-eEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFDC-HAWVRVSIAYNFRMILDDIIKSVMPP 186 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~ 186 (422)
|.+..++.|...+..+. .+.+.++|+.|+||||+|+.+... +.. .+.. ..-++.+....
T Consensus 29 g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~--------------- 89 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRG--------------- 89 (340)
T ss_dssp SCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCS---------------
T ss_pred CcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCccccc---------------
Confidence 88888888888887654 333889999999999999999873 211 1111 11222222111
Q ss_pred CCCCccCCCCHHHHHHHHHHh------cCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 187 SRVSVVIGEDYQLKKSILRDY------LTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~------L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
.+.+...+... +.+.+-++|+|++..-.....+.+...+......+.+|++|...
T Consensus 90 ----------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 90 ----------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp ----------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ----------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 22222222221 12346789999986435555566655554333456777777543
No 46
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.27 E-value=0.00015 Score=68.22 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHhcCCC-CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQP-QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++....+.+.+++..-.. ....+.|+|..|+|||+||..+++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 555566666677765322 246788999999999999999998
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.25 E-value=0.00093 Score=66.10 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=33.7
Q ss_pred hhhhhH---HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGR---EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..+ ..|...+..+. ...+.|+|.+|+||||||+.+.+
T Consensus 30 Gq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp SCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 877777 67777777654 57789999999999999999998
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.22 E-value=0.0004 Score=66.65 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHhc----------CCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE----------GQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.|.+.+.. .....+.|.|+|.+|+|||+||+.+++.
T Consensus 88 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 88 GVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 899999888887742 1123567889999999999999999883
No 49
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.21 E-value=0.00079 Score=61.54 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..+.++.+.+..-......|.|+|.+|+|||+||+.+++.
T Consensus 10 g~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 10 GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 7777788777766542222345779999999999999999984
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.16 E-value=0.00045 Score=64.61 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=61.8
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|.+..++.|...+... ......+.++|.+|+|||++|+.++. .....-...+.+..+.-... .....+
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~-~~~~~l-- 95 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEK-HAVSRL-- 95 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCST-THHHHH--
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccccccc-ccHHHh--
Confidence 7777777777776542 11246899999999999999999987 33221112344444432221 111222
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhc
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVL 235 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l 235 (422)
++..... .. ......+...+.. ....+|+||++..-.......+...+
T Consensus 96 -~g~~~~~-~~-~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 96 -IGAPPGY-VG-YEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp -HCCCTTS-TT-TTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred -cCCCCcc-cc-ccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 1211110 00 0111122222222 23469999999755666667766655
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.10 E-value=0.00088 Score=64.22 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHHhc----------CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE----------GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|.+.+.. .....+-|.|+|.+|+|||+||+.+++
T Consensus 55 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 55 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 889888888887731 111234578999999999999999998
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.09 E-value=0.0035 Score=61.96 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHhc---------C-CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE---------G-QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.|.+.+.. + ....+-|.|+|++|+|||+||+.+++.
T Consensus 138 G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 138 GLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 889888888887731 1 123467889999999999999999983
No 53
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.08 E-value=0.00033 Score=59.77 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=35.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.+++.+.+.+.... ...+.|+|.+|+|||+||+.+++
T Consensus 26 g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 26 GRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 99999999999997643 45678999999999999999987
No 54
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.0015 Score=65.95 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHHhcC---------------CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEG---------------QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|++..+++|.++|... .+..+.+.|+|++|+||||+|+.+++.
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999751 013478999999999999999999983
No 55
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.06 E-value=0.0011 Score=61.70 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHhcC----------CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEG----------QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.|.+.+... ......+.|+|++|+||||||+.+++.
T Consensus 25 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 25 GQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 8888888888877431 112467889999999999999999983
No 56
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.05 E-value=0.0011 Score=64.29 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHhcC----------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG----------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|.+.+... .....-|.|+|.+|+|||+||+.+++
T Consensus 119 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 119 GQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 9999999998887321 11246788999999999999999988
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.99 E-value=0.00063 Score=63.77 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus 6 g~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 6 GSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 6777778877777653223445779999999999999999874
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.91 E-value=0.0014 Score=65.62 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=54.5
Q ss_pred hhhhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHH
Q 042081 109 EFESGREELFDLLIEG-----------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILD 177 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 177 (422)
|.+..+++|.+++... .....-|.|+|.+|+|||+||+.+++ .....| +.++. ..
T Consensus 208 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~------~~--- 273 (489)
T 3hu3_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------PE--- 273 (489)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEH------HH---
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEc------hH---
Confidence 8888888888877531 22355688999999999999999988 333222 22221 11
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCC
Q 042081 178 DIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDY 220 (422)
Q Consensus 178 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv 220 (422)
+...+. +.....+...+.....+++.+|+||++
T Consensus 274 -l~~~~~---------g~~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 274 -IMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp -HHTSCT---------THHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred -hhhhhc---------chhHHHHHHHHHHHHhcCCcEEEecch
Confidence 111110 122233444455555567889999998
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.87 E-value=0.0015 Score=60.89 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+..+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999998
No 60
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.86 E-value=0.00097 Score=62.44 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRV--SIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
-+++.|+|++|+|||+||.++... .-..++|++. .+..+. . ..+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~---------------~-----~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG---------------Y-----NTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------C-----BCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------h-----hcCHHHHHHHHH
Confidence 457789999999999999999873 1112456666 322110 0 034566666666
Q ss_pred HhcCCceEEEEEeCCC
Q 042081 206 DYLTNKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~ 221 (422)
+.+...+ |||+|++.
T Consensus 178 ~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHHCS-EEEEECCT
T ss_pred HHHhhCC-EEEEeccc
Confidence 6666556 99999986
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.80 E-value=0.0018 Score=64.54 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.+++.++..|.... ..-+.++|.+|+|||++|+.++.
T Consensus 184 Gr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 184 GRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 99999999999997643 33457999999999999999987
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.75 E-value=0.011 Score=62.35 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=34.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.+++.+++.|.... ..-+.|+|.+|+|||++|+.+++
T Consensus 190 Gr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 190 GREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 99999999999987653 44567999999999999999986
No 63
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.65 E-value=0.0026 Score=63.16 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=51.1
Q ss_pred hhhhhHHHHHHHHh---cC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHH
Q 042081 109 EFESGREELFDLLI---EG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDD 178 (422)
Q Consensus 109 Gr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 178 (422)
|.++.+++|.+.+. .. ....+-|.|+|++|.|||+||+.+++ +....| +.++.+.-...
T Consensus 20 G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~------ 88 (476)
T 2ce7_A 20 GAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL------ 88 (476)
T ss_dssp SCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC------
T ss_pred CcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH------
Confidence 77777766665543 21 11233477999999999999999998 332222 22332221110
Q ss_pred HHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 179 IIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 179 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
+ . +.........+.....+.+.+|+||++.
T Consensus 89 ----~----~-----g~~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 89 ----F----V-----GVGAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp ----C----T-----THHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred ----H----h-----cccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 0 0 0122233344455555678999999984
No 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.63 E-value=0.0051 Score=55.75 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHH---hcC-------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLL---IEG-------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L---~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..+++|.+.+ ... ....+-+.|+|.+|+||||||+.+++
T Consensus 16 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 16 GCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp SCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 7776666655543 221 11234578999999999999999988
No 65
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.61 E-value=0.0019 Score=56.70 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 113 GREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 113 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..++|.+.+....+...+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44556666554334578999999999999999999876
No 66
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.54 E-value=0.01 Score=52.89 Aligned_cols=94 Identities=6% Similarity=-0.002 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCccCCCCH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR-----VSVVIGEDY 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~ 197 (422)
.-.++.|+|.+|+|||||+..+........ .-...+|+.....++...+. .+++.++.... -......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 356999999999999999999987322211 12457888877665555443 34445543210 000011233
Q ss_pred HH---HHHHHHHhcC-CceEEEEEeCCC
Q 042081 198 QL---KKSILRDYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~---~~~~l~~~L~-~kr~LlVLDdv~ 221 (422)
.+ ....+...+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 33 2333444443 467899999975
No 67
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.54 E-value=0.003 Score=55.10 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHhcC-CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 110 FESGREELFDLLIEG-QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 110 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|++.+++|.+.+... .....+|+|+|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 566778888888763 23568999999999999999999876
No 68
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.53 E-value=0.0053 Score=58.58 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 205 (422)
.-.++.|.|.+|+|||||+.++... ....=..++|++....++.. .++.++..... ......+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999873 22111236788777666654 45555543221 1111256667666666
Q ss_pred HhcC-CceEEEEEeCCC
Q 042081 206 DYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~-~kr~LlVLDdv~ 221 (422)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 6554 455689999875
No 69
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.51 E-value=0.0058 Score=57.64 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCC----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CccCCCCH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFY----FDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-----SVVIGEDY 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~ 197 (422)
.-.++.|+|.+|+||||||.++......... =..++|++....++..++. .+++.++..... ......+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3568999999999999999998864222211 1357899888887776655 345555443210 00111233
Q ss_pred H---HHHHHHHHhcC--CceEEEEEeCCC
Q 042081 198 Q---LKKSILRDYLT--NKKYFIVLDDYC 221 (422)
Q Consensus 198 ~---~~~~~l~~~L~--~kr~LlVLDdv~ 221 (422)
+ ++...+...+. .+.-|||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 3 34445555553 467799999885
No 70
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.51 E-value=0.016 Score=55.11 Aligned_cols=95 Identities=7% Similarity=0.006 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC-----C---CccC
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR-----V---SVVI 193 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~---~~~~ 193 (422)
+.-.++.|+|.+|+||||||.+++....... .=..++|++....++...+.. ++..++.... - ....
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 3467999999999999999999887422211 113578998888777766543 4455543311 0 0000
Q ss_pred CCCHHHHHHHHHHhcC---CceEEEEEeCCC
Q 042081 194 GEDYQLKKSILRDYLT---NKKYFIVLDDYC 221 (422)
Q Consensus 194 ~~~~~~~~~~l~~~L~---~kr~LlVLDdv~ 221 (422)
.....++...+...+. .+.-|||+|.+.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1222234444444443 456799999885
No 71
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0067 Score=57.09 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccC---------Cc-----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC---
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKF---------YF-----DCHAWVRVSIAYNFRMILDDIIKSVMPPSRV--- 189 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--- 189 (422)
.-.++.|.|.+|+||||||.+++....... .. ..++|++....++..++.. +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 467999999999999999999886422211 11 3578998888887776654 44555543210
Q ss_pred --CccCCCCHH---HHHHHHHHhcC--CceEEEEEeCCC
Q 042081 190 --SVVIGEDYQ---LKKSILRDYLT--NKKYFIVLDDYC 221 (422)
Q Consensus 190 --~~~~~~~~~---~~~~~l~~~L~--~kr~LlVLDdv~ 221 (422)
......+.+ ++...+...+. .+.-|||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 001112333 34445555554 356699999885
No 72
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.39 E-value=0.0018 Score=57.59 Aligned_cols=115 Identities=17% Similarity=0.016 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHh
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDY 207 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 207 (422)
-.++.|+|..|+||||++..+.+. ...+-..++.+..... .. ....++..++..... .+ .....++...+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~-~~-~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPS-VE-VESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCC-EE-ESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccc-cc-cCCHHHHHHHHHHH
Confidence 578899999999999999888773 3222112333322221 11 112334444332211 11 13455667777776
Q ss_pred cCCceE-EEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChh
Q 042081 208 LTNKKY-FIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPD 252 (422)
Q Consensus 208 L~~kr~-LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 252 (422)
+.+.++ +||+|.+..-+.+..+.+.. +.. .|-.||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 655544 99999886434445444433 222 2678999988654
No 73
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.35 E-value=0.023 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 74
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.35 E-value=0.0049 Score=54.53 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-----------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS----------------- 190 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~----------------- 190 (422)
-.++.|+|.+|+|||||+..+... ....=..++|++... ....+...+ ..++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 468999999999999999998852 111111355655433 344444333 2333221100
Q ss_pred --ccCCCCHHHHHHHHHHhcCC---ceEEEEEeCCCC---CChhHHHHHHhhcCC--CCCCcEEEEeecCh
Q 042081 191 --VVIGEDYQLKKSILRDYLTN---KKYFIVLDDYCE---ESDDVLDDLEEVLPE--NQNGSRVLMTVTDP 251 (422)
Q Consensus 191 --~~~~~~~~~~~~~l~~~L~~---kr~LlVLDdv~~---~~~~~~~~l~~~l~~--~~~gs~ilvTTR~~ 251 (422)
.....+..++...+...+.. +..+||+|.... .+......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00012556666666555432 334999998751 122222333332221 12477899998876
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.35 E-value=0.0052 Score=64.99 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||+.+++.++..|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 184 G~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 184 GRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 99999999999997643 33467999999999999999987
No 76
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.33 E-value=0.032 Score=50.86 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=65.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE----------------EeCCCC----CHH--------------H
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV----------------RVSIAY----NFR--------------M 174 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv----------------~vs~~~----~~~--------------~ 174 (422)
.+++|+|..|+|||||.+.+..-. ...+.+++ .+.+.+ ++. +
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~ 106 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD 106 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHH
Confidence 489999999999999999997521 11111111 122221 221 1
Q ss_pred HHHHHHHHhCCC-CCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 175 ILDDIIKSVMPP-SRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 175 ~~~~il~~l~~~-~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
...++++.++.. ... ..+.. ..-+...-.+...|..++-+|+||.--.. +...-..+...+..-.. .||++|.+
T Consensus 107 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd 184 (263)
T 2pjz_A 107 LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHE 184 (263)
T ss_dssp HHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESC
T ss_pred HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcC
Confidence 234556666554 211 11112 22333334456666667779999975321 33333444443332222 68888988
Q ss_pred hhHhhhc
Q 042081 251 PDFLSSF 257 (422)
Q Consensus 251 ~~va~~~ 257 (422)
...+..+
T Consensus 185 ~~~~~~~ 191 (263)
T 2pjz_A 185 LDMLNLY 191 (263)
T ss_dssp GGGGGGC
T ss_pred HHHHHHh
Confidence 6665443
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.32 E-value=0.0077 Score=63.69 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=66.7
Q ss_pred hhhhhHHHHHHHHhcCC-------CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEGQ-------PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|.+..++.|...+.... .....+.++|.+|+|||++|+.+++. ....-...+.++.+.-.+
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~---------- 562 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYME---------- 562 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCS----------
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccc----------
Confidence 88888888888876421 12347899999999999999999873 211111233444332111
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCC-----------CCCcEEEEeecC
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPEN-----------QNGSRVLMTVTD 250 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTR~ 250 (422)
... .....+...++. ....+|+||++..-..+....|...+..+ .....||+||..
T Consensus 563 ----~~~------~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 563 ----KHS------TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----SCC------CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----ccc------cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 001111122222 12348999999766677777776655321 124578888873
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.32 E-value=0.0048 Score=66.20 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
||++++..+++.|.... ..-+.++|.+|+|||+||+.+++
T Consensus 174 Gr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 174 GRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp SCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 99999999999997653 33467899999999999999987
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.21 E-value=0.016 Score=51.07 Aligned_cols=128 Identities=13% Similarity=0.036 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-C--Cc---------ceeEEEEeCCC----CCHH----------------HH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--YF---------DCHAWVRVSIA----YNFR----------------MI 175 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~--~F---------~~~~wv~vs~~----~~~~----------------~~ 175 (422)
-.+++|+|..|+|||||.+.++.-..-. + .| ..+.++.-... .++. +-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 114 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE 114 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHH
Confidence 3589999999999999999997631110 0 01 11233321111 1221 12
Q ss_pred HHHHHHHhCCCCCCCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCC----CChhHHHHHHhhcCCCCCCcEEEEeecC
Q 042081 176 LDDIIKSVMPPSRVSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCE----ESDDVLDDLEEVLPENQNGSRVLMTVTD 250 (422)
Q Consensus 176 ~~~il~~l~~~~~~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~----~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 250 (422)
..++++.++.......+.. ..-+...-.+...|..++-+|+||.--. ........+...+.. .|..||++|.+
T Consensus 115 ~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tiiivtHd 192 (214)
T 1sgw_A 115 IMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK--EKGIVIISSRE 192 (214)
T ss_dssp HHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH--HHSEEEEEESS
T ss_pred HHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 3345555554321111112 2233334456666777778999996431 123333333333321 25678888888
Q ss_pred hhHhhhc
Q 042081 251 PDFLSSF 257 (422)
Q Consensus 251 ~~va~~~ 257 (422)
...+..+
T Consensus 193 ~~~~~~~ 199 (214)
T 1sgw_A 193 ELSYCDV 199 (214)
T ss_dssp CCTTSSE
T ss_pred HHHHHHh
Confidence 6655443
No 80
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.18 E-value=0.0056 Score=56.78 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=44.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCC---cceeEEEEeCCCCCHHHHHHHHHHHhCCC---CCCCccCCCCHH
Q 042081 125 QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFY---FDCHAWVRVSIAYNFRMILDDIIKSVMPP---SRVSVVIGEDYQ 198 (422)
Q Consensus 125 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~wv~vs~~~~~~~~~~~il~~l~~~---~~~~~~~~~~~~ 198 (422)
.....+|+|+|..|+||||||+.+.. ..... ......|+...-+-.......+....... .....|...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~--~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH--HhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 44678999999999999999998876 22211 12334435443322233334433221100 000113345666
Q ss_pred HHHHHHHHhcCC
Q 042081 199 LKKSILRDYLTN 210 (422)
Q Consensus 199 ~~~~~l~~~L~~ 210 (422)
.+.+.+.....+
T Consensus 106 ~l~~~l~~l~~g 117 (290)
T 1odf_A 106 LLQEVLNTIFNN 117 (290)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHhhcc
Confidence 666666666554
No 81
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.16 E-value=0.031 Score=55.36 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+-.+.+..+...+.... +.+.|.|.+|.||||++..+..
T Consensus 29 ~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 66666777777776643 3899999999999999998876
No 82
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.16 E-value=0.036 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999975
No 83
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.13 E-value=0.055 Score=51.63 Aligned_cols=131 Identities=10% Similarity=0.075 Sum_probs=71.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Cc-----------------ceeEEEEeCC----CCCHH----------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YF-----------------DCHAWVRVSI----AYNFR---------- 173 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F-----------------~~~~wv~vs~----~~~~~---------- 173 (422)
-.+++|+|..|+|||||.+.+..-..-.. .| ..+.+|.-.. ..++.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~ 133 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 133 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999975211000 00 1122331111 11211
Q ss_pred --------HHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCC
Q 042081 174 --------MILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQN 240 (422)
Q Consensus 174 --------~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~ 240 (422)
+...++++.++..... ..+.. ..-+...-.|...|..++-+|+||.--.. ++..-..+...+.. ...
T Consensus 134 ~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~ 213 (366)
T 3tui_C 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence 1234455555543211 12222 33344455677778888889999975321 33333333333321 123
Q ss_pred CcEEEEeecChhHhhhcc
Q 042081 241 GSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 241 gs~ilvTTR~~~va~~~~ 258 (422)
|..||++|.+..++..++
T Consensus 214 g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 214 GLTILLITHEMDVVKRIC 231 (366)
T ss_dssp CCEEEEEESCHHHHHHHC
T ss_pred CCEEEEEecCHHHHHHhC
Confidence 778999999988776543
No 84
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.13 E-value=0.051 Score=49.27 Aligned_cols=130 Identities=9% Similarity=0.045 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-C--Cc-------------ceeEEEEeCC----CCCHHH-------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--YF-------------DCHAWVRVSI----AYNFRM------------- 174 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~--~F-------------~~~~wv~vs~----~~~~~~------------- 174 (422)
-.+++|+|..|+|||||.+.+..-.... + .| ..+.++.-.. ..++.+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 120 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS 120 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCCh
Confidence 4689999999999999999997521100 0 00 0122331111 112211
Q ss_pred -----HHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-CCCCcEEE
Q 042081 175 -----ILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-NQNGSRVL 245 (422)
Q Consensus 175 -----~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~il 245 (422)
...++++.++..... ..+.. ..-+...-.+...|..++-+|+||.--.. ++..-..+...+.. ...|..||
T Consensus 121 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii 200 (256)
T 1vpl_A 121 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200 (256)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 123445555443211 11111 22233344566667777789999975321 33333333333321 12367799
Q ss_pred EeecChhHhhhc
Q 042081 246 MTVTDPDFLSSF 257 (422)
Q Consensus 246 vTTR~~~va~~~ 257 (422)
++|.+...+..+
T Consensus 201 ivtHd~~~~~~~ 212 (256)
T 1vpl_A 201 VSSHNMLEVEFL 212 (256)
T ss_dssp EEECCHHHHTTT
T ss_pred EEcCCHHHHHHH
Confidence 999997766553
No 85
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0057 Score=59.82 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.+++|.+.+.- +-..++=|.++|++|.|||+||+.+++
T Consensus 176 Gl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 176 GLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 899998888876642 123456688999999999999999998
No 86
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0045 Score=59.81 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=54.3
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHH
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILD 177 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 177 (422)
|.++.+++|.+.+.- +-..++=|.++|++|.|||.||+.+++ .....| +.++.+.-.+
T Consensus 152 Gl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s------ 220 (405)
T 4b4t_J 152 GLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ------ 220 (405)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC------
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc------
Confidence 888888888776642 122356688999999999999999998 333333 3333332111
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 178 DIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 178 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
... +.+...+...+...-...+++|.+|++.
T Consensus 221 --------k~v-----Gese~~vr~lF~~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 221 --------KYI-----GEGSRMVRELFVMAREHAPSIIFMDEID 251 (405)
T ss_dssp --------SST-----THHHHHHHHHHHHHHHTCSEEEEEESSS
T ss_pred --------ccc-----chHHHHHHHHHHHHHHhCCceEeeecch
Confidence 000 1223333333333334578999999986
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.08 E-value=0.015 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|.+|+|||||+..+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 469999999999999999998763
No 88
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.08 E-value=0.03 Score=52.20 Aligned_cols=85 Identities=7% Similarity=0.061 Sum_probs=55.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-ccCCCCHHHH-HHHHH
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSIAYNFRMILDDIIKSVMPPSRVS-VVIGEDYQLK-KSILR 205 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~-~~~l~ 205 (422)
++-|.|.+|+|||||+.++... ....+ ..++|++....++.. .++.++.....- .....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999988763 32222 347888888777753 366776653210 0011455555 44333
Q ss_pred Hh--c-CCceEEEEEeCCC
Q 042081 206 DY--L-TNKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~--L-~~kr~LlVLDdv~ 221 (422)
.. + .++.-|||+|.+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 33 3 4578899999986
No 89
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0067 Score=59.44 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.+++|.+.+.- +-..++=|.++|++|.|||+||+.+++
T Consensus 185 Gl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 185 GLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 888888888776642 123457788999999999999999998
No 90
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.03 E-value=0.17 Score=44.81 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=33.6
Q ss_pred HHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhc-CCCCCCcEEEEeecChhHhhh
Q 042081 202 SILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVL-PENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 202 ~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l-~~~~~gs~ilvTTR~~~va~~ 256 (422)
-.+...|-.++-+++||.--.. +...-..+...+ .....|..||++|.+...+..
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 3455555566778999975321 455555565543 322336778999998776543
No 91
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.02 E-value=0.0023 Score=61.28 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCccCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR--VSVVIGEDYQLKKSILR 205 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~l~ 205 (422)
-.+++|+|..|+|||||.+.+.. .+.......+ +++..+.... +..... .......+.......+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHH
Confidence 45999999999999999998876 2221112222 2222221100 000000 00000111223455888
Q ss_pred HhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 206 DYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
..|...+=+|++|..- +.+.++.+.... ..|..||+||...+.+.
T Consensus 191 ~aL~~~PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 191 SALREDPDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHTTSCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHhhhCcCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 8899888999999998 777777655543 23667999999877654
No 92
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0079 Score=59.03 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=54.8
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHH
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILD 177 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 177 (422)
|.++.+++|.+.+.- +-..++=|.++|++|.|||.||+.+++ +....| +.++.+.-
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L-------- 279 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSEL-------- 279 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG--------
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHh--------
Confidence 899988888776531 123467788999999999999999998 443333 23332221
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 178 DIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 178 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
..... +.+...+...+...-...+++|++|++.
T Consensus 280 ------~sk~v-----Gesek~ir~lF~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 280 ------VQKYV-----GEGARMVRELFEMARTKKACIIFFDEID 312 (467)
T ss_dssp ------CCCSS-----SHHHHHHHHHHHHHHHTCSEEEEEECCT
T ss_pred ------hcccC-----CHHHHHHHHHHHHHHhcCCceEeecccc
Confidence 11110 1222333333333344578999999986
No 93
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.99 E-value=0.015 Score=55.36 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 205 (422)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. .++.++..... ......+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4568999999999999999998763 21111247888887766643 24445433211 0111245666666666
Q ss_pred HhcCC-ceEEEEEeCCC
Q 042081 206 DYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~~-kr~LlVLDdv~ 221 (422)
..... +.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 55543 56699999875
No 94
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.018 Score=53.57 Aligned_cols=87 Identities=11% Similarity=0.019 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI-AYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
...+++++|.+|+||||++..+.......... .+..+.... .....+.+....+..+.+... ..+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~----~~~~~~l~~al~ 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEV----CYTKEEFQQAKE 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCB----CSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEe----cCCHHHHHHHHH
Confidence 46799999999999999999887621111111 234444332 223333344443333322211 133445555555
Q ss_pred HhcCCceEEEEEeCC
Q 042081 206 DYLTNKKYFIVLDDY 220 (422)
Q Consensus 206 ~~L~~kr~LlVLDdv 220 (422)
. + .+.=+||+|-.
T Consensus 179 ~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 L-F-SEYDHVFVDTA 191 (296)
T ss_dssp H-G-GGSSEEEEECC
T ss_pred H-h-cCCCEEEEeCC
Confidence 3 3 34457888843
No 95
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.98 E-value=0.011 Score=63.27 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=67.7
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
|.+..++.+...+... ......+.|+|..|+|||++|+.+.+. ....=...+.++.+.-... ... .
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~~~----s 634 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HAV----S 634 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-GGG----G
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-hHH----H
Confidence 7888888887777542 112368899999999999999999873 2111011233333322111 000 1
Q ss_pred HhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCC-----------CCcEEEEeecC
Q 042081 182 SVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQ-----------NGSRVLMTVTD 250 (422)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 250 (422)
.+.+....... ......+...++. ...-+|+||++..-+.+....|...+..+. .+..||+||..
T Consensus 635 ~l~g~~~~~~G-~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 635 RLIGAPPGYVG-YEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp GC---------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HHcCCCCCCcC-ccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 11110000000 0001122233332 224589999997667777777877765331 23447777764
No 96
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.97 E-value=0.017 Score=58.53 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHHHhc----CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE----GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.++.+.+.+.- ......++.++|.+|+||||||+.++.
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 777777666554431 122456899999999999999999987
No 97
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.93 E-value=0.0039 Score=52.42 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 042081 129 SVVAILDSSGFDKTAFAADT 148 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v 148 (422)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 98
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.93 E-value=0.018 Score=55.10 Aligned_cols=88 Identities=11% Similarity=0.036 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 205 (422)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. .+..++..... ...+..+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3568889999999999999988763 22111357899888776654 24445443211 0011245677777777
Q ss_pred HhcCC-ceEEEEEeCCC
Q 042081 206 DYLTN-KKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~~-kr~LlVLDdv~ 221 (422)
..++. +.-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 66653 45699999875
No 99
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.93 E-value=0.019 Score=53.60 Aligned_cols=91 Identities=12% Similarity=-0.014 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCH--HHHHHHHHHHhCCCCCCCccCCCCHHHH-HHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNF--RMILDDIIKSVMPPSRVSVVIGEDYQLK-KSI 203 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~-~~~ 203 (422)
...++.|+|.+|+||||++..++.. ....=..+..+... .+.. .+-+...++.++.+.-.. ....+...+ ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~-~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISH-SEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECC-STTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEec-CCccCHHHHHHHH
Confidence 4679999999999999999998862 22111123444332 2222 122334445444321100 001233322 234
Q ss_pred HHHhcCCceEEEEEeCCC
Q 042081 204 LRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 204 l~~~L~~kr~LlVLDdv~ 221 (422)
+...+....-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444454455578888553
No 100
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0062 Score=59.63 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.+++|.+.+.- +-..++=|.++|++|.|||.||+.+++
T Consensus 185 Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp SCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 899998888876432 123466788999999999999999998
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.89 E-value=0.0041 Score=52.78 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 102
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.86 E-value=0.037 Score=50.69 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=31.2
Q ss_pred hhhhhHHHHHHHHhc---C---------CCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE---G---------QPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~---~---------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.++.+++|.+.+.. . ..... +.++|++|.||||||+.++..
T Consensus 14 g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 14 ALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 888888887765421 0 11223 899999999999999999983
No 103
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.85 E-value=0.0085 Score=63.17 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=56.6
Q ss_pred hhhhhHHHHHHHHhc----C-------CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHH
Q 042081 109 EFESGREELFDLLIE----G-------QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILD 177 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 177 (422)
|.++.+++|.+++.- . -..++-|.++|++|.|||+||+.+++ +...+| +.++.+ ++
T Consensus 208 Gl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------~l-- 274 (806)
T 3cf2_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------EI-- 274 (806)
T ss_dssp SCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH------HH--
T ss_pred CHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH------Hh--
Confidence 888888888776531 1 12456788999999999999999998 444333 233211 11
Q ss_pred HHHHHhCCCCCCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 178 DIIKSVMPPSRVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 178 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
+ .... +.....+...+.......+++|++|++.
T Consensus 275 --~----sk~~-----gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 275 --M----SKLA-----GESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp --H----SSCT-----THHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred --h----cccc-----hHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 1 1111 1334445555555556778999999985
No 104
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.83 E-value=0.069 Score=52.25 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888875
No 105
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.82 E-value=0.01 Score=63.05 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.+..
T Consensus 208 G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp SCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 888888888888753 112355789999999999999999988
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.81 E-value=0.006 Score=52.40 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999999999873
No 107
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.77 E-value=0.0049 Score=51.81 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 108
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.77 E-value=0.0058 Score=51.79 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35799999999999999999987
No 109
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.74 E-value=0.042 Score=53.24 Aligned_cols=94 Identities=7% Similarity=0.006 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCccCCCCH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKF----YFDCHAWVRVSIAYNFRMILDDIIKSVMPPSR-----VSVVIGEDY 197 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~ 197 (422)
.-.++.|+|.+|+|||||+..++-...... .-..++|++....+....+ ..+++.++.... .......+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 356999999999999999997753212211 1235788887776665544 335565554311 001111222
Q ss_pred HH---HHHHHHHhcC-CceEEEEEeCCC
Q 042081 198 QL---KKSILRDYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 198 ~~---~~~~l~~~L~-~kr~LlVLDdv~ 221 (422)
.. ....+...+. .+.-|||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 22 2233333332 467799999864
No 110
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.71 E-value=0.031 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++|+|..|+||||++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998876
No 111
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.68 E-value=0.018 Score=55.02 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 205 (422)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. .+..++..... ...+..+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3568999999999999999988763 21111257888887777643 23445433211 0011134556665555
Q ss_pred HhcC-CceEEEEEeCCC
Q 042081 206 DYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~-~kr~LlVLDdv~ 221 (422)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4443 345599999874
No 112
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.67 E-value=0.026 Score=52.87 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKS 182 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 182 (422)
.-.++.|.|.+|+||||||..++.+...++ ..++|++.. -+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 456899999999999999999876422222 457777655 4556666666554
No 113
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.64 E-value=0.013 Score=54.15 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.....++++..++.. .....+|.|.|++|+||||+|+.+..
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444555666655543 23467899999999999999999987
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.61 E-value=0.036 Score=54.19 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 115
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.60 E-value=0.0067 Score=52.73 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 116
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.59 E-value=0.0065 Score=51.93 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 117
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.59 E-value=0.04 Score=54.99 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=30.2
Q ss_pred hhhhhHHHHHHHHh---cCC-------CCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLI---EGQ-------PQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.++.+.++.+.+. ... .-.+-+.|+|.+|+||||||+.++..
T Consensus 35 G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 35 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 87777666665543 210 11223889999999999999999984
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.53 E-value=0.0057 Score=51.59 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 119
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.53 E-value=0.0084 Score=52.13 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|+.|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 120
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.50 E-value=0.0082 Score=56.84 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.+-..+..+ ......+.++|++|+||||||+.+++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 7776777766666432 22356799999999999999999998
No 121
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.46 E-value=0.0091 Score=51.23 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999976
No 122
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.43 E-value=0.014 Score=52.89 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHhcC---CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG---QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
......+.++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 10 EFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555566666666654 23467999999999999999999987
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.42 E-value=0.0079 Score=51.36 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 124
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.39 E-value=0.0091 Score=51.13 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 125
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.013 Score=57.01 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIE-----------GQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.+++|.+.+.- +-...+=|.++|++|.|||.||+.+++
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 888888888776632 113456788999999999999999998
No 126
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.36 E-value=0.056 Score=51.43 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCc---ce-eEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CccCC---
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYF---DC-HAWVRVSIAYNFRMILDDIIKSVMPPSRV-----SVVIG--- 194 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~--- 194 (422)
.-.++.|+|..|+|||||+..++......... .. ++|++....+....+ ..++...+..... .....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 46899999999999999999998742111111 23 488877665544333 3344444322100 00000
Q ss_pred CCHHHHHHHHHHhcC------CceEEEEEeCCC
Q 042081 195 EDYQLKKSILRDYLT------NKKYFIVLDDYC 221 (422)
Q Consensus 195 ~~~~~~~~~l~~~L~------~kr~LlVLDdv~ 221 (422)
....++...+...+. .+.-|||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112334444455553 467899999885
No 127
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.35 E-value=0.014 Score=61.65 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|...+... ......+.++|.+|+|||++|+.+.+
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 7777887777776531 12345789999999999999999988
No 128
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.35 E-value=0.0088 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 129
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.34 E-value=0.0097 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+|.|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.32 E-value=0.014 Score=50.55 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC---CCCHHHHHHHHHHHhCC------CCCC-CccC----C
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI---AYNFRMILDDIIKSVMP------PSRV-SVVI----G 194 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~il~~l~~------~~~~-~~~~----~ 194 (422)
..|-|++-.|.||||+|-.+.-. .....+. +..+.+.+ ......++. .+.. .... ..+. .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR-A~g~G~r-V~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR-AVGHGKN-VGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH-HHHTTCC-EEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHHCCCe-EEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHHH
Confidence 45556666779999999776652 1112222 33333322 223333433 3320 0000 0000 0
Q ss_pred CCHHHHHHHHHHhcCCc-eEEEEEeCCCC---CChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 195 EDYQLKKSILRDYLTNK-KYFIVLDDYCE---ESDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 195 ~~~~~~~~~l~~~L~~k-r~LlVLDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
..........++.+.+. -=|||||.+-. ...-..+.+...+........||+|+|+.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11223344455556554 44999998720 01111233443333333456799999985
No 131
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.32 E-value=0.0084 Score=55.65 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHHHhcC------------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG------------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.|...+... .....-+.++|.+|+|||++|+.+.+
T Consensus 19 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 8888888888877540 11245677999999999999999987
No 132
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.32 E-value=0.04 Score=54.43 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCC-HHHHHHHHHHHhCCC-------CC
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYN-FRMILDDIIKSVMPP-------SR 188 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~-------~~ 188 (422)
+++.|..-. +-+-++|.|..|+|||+|++.+.++. .+.+-+..+++-+++... ..++..++...=... ..
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 455555432 24578999999999999999998742 123446778888887654 556777776542211 00
Q ss_pred C------CccC--CCCHHHHHHHHHHhcC---CceEEEEEeCCC
Q 042081 189 V------SVVI--GEDYQLKKSILRDYLT---NKKYFIVLDDYC 221 (422)
Q Consensus 189 ~------~~~~--~~~~~~~~~~l~~~L~---~kr~LlVLDdv~ 221 (422)
. ..|. -.-.....-.+.++++ ++.+||++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 0000 0122233344555554 589999999984
No 133
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.31 E-value=0.068 Score=52.37 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcC-------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 112 SGREELFDLLIEG-------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 112 ~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
--.++|.+.|... ....++|.++|.+|+||||++..+..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455566666432 13478999999999999999988875
No 134
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.29 E-value=0.011 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 135
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.29 E-value=0.01 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999986
No 136
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.27 E-value=0.01 Score=55.59 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+.+||+|.|-|||||||.+..+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998877654
No 137
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.27 E-value=0.02 Score=50.42 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 110 FESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 110 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.++..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 22 ~~~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 22 NKRLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555554433 4788999999999999999998874
No 138
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.26 E-value=0.008 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999886
No 139
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.25 E-value=0.0095 Score=50.44 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~ 149 (422)
-.+++|+|..|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 5689999999999999999754
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.25 E-value=0.011 Score=50.73 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.23 E-value=0.01 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 142
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.22 E-value=0.0082 Score=52.16 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.22 E-value=0.012 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 144
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.21 E-value=0.011 Score=51.70 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999999873
No 145
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.21 E-value=0.013 Score=51.15 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 146
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.19 E-value=0.011 Score=51.23 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 147
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.18 E-value=0.013 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+..+|+|+|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 148
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.17 E-value=0.019 Score=50.44 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+.++..+.+...+... +..+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445555555555433 4789999999999999999998874
No 149
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.16 E-value=0.012 Score=51.13 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+++|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 150
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.13 E-value=0.0096 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 151
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.13 E-value=0.011 Score=49.52 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999987
No 152
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.11 E-value=0.012 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 153
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.10 E-value=0.012 Score=51.18 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 154
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.09 E-value=0.013 Score=50.38 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 155
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.08 E-value=0.0095 Score=51.14 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 156
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.06 E-value=0.012 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|+|+|+.|+||||+++.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 157
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.05 E-value=0.016 Score=55.33 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHHh-------------cCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLI-------------EGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.|...+. ........+.++|.+|+|||++|+.+++.
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 77888888877773 11113457889999999999999999983
No 158
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.05 E-value=0.01 Score=51.67 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 159
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.04 E-value=0.032 Score=52.39 Aligned_cols=94 Identities=7% Similarity=-0.080 Sum_probs=50.1
Q ss_pred hhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042081 112 SGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSIAYNFRMILDDIIKSVMPPS 187 (422)
Q Consensus 112 ~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 187 (422)
..+..+...+... .....+|+|.|..|+|||||++.+.. ...... ..+..++...-+-....+. ..+...
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~--ll~~~~~~~~v~~i~~D~f~~~~~~l~----~~~~~~ 147 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA--LLSRWPDHPNVEVITTDGFLYSNAKLE----KQGLMK 147 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGGBCCHHHHH----HTTCGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH--HhcccCCCCeEEEEeecccccchhhhh----hHHHHh
Confidence 3344444444443 34577999999999999999999875 222111 1234444433221111111 111111
Q ss_pred CCCccCCCCHHHHHHHHHHhcCCc
Q 042081 188 RVSVVIGEDYQLKKSILRDYLTNK 211 (422)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~L~~k 211 (422)
....|...+.+.+...+.....++
T Consensus 148 ~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 148 RKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp GTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred hccCcccccHHHHHHHHHhhhccc
Confidence 011233467777888887777766
No 160
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.03 E-value=0.026 Score=53.89 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 112 SGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 112 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
....++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345556666665445688999999999999999998865
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.02 E-value=0.015 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.01 E-value=0.014 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 163
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.00 E-value=0.013 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999984
No 164
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.00 E-value=0.014 Score=49.89 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.99 E-value=0.011 Score=50.13 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 166
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.98 E-value=0.014 Score=52.66 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999877
No 167
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.97 E-value=0.015 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 168
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.94 E-value=0.017 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 169
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.93 E-value=0.015 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 170
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.91 E-value=0.024 Score=50.99 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|.|+.|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 171
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.90 E-value=0.012 Score=51.20 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 172
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.90 E-value=0.016 Score=52.73 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 173
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.90 E-value=0.017 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 174
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.89 E-value=0.1 Score=48.33 Aligned_cols=91 Identities=14% Similarity=-0.074 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-YNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRD 206 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 206 (422)
..+++++|.+|+||||++..+... ....=..+.++..... ....+.+.......+.+--. .+...+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~-~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG-EPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC-CTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe-cCCCCCHHHHHHHHHH
Confidence 679999999999999999988762 2211112444544322 22233344444444332110 0111344555433333
Q ss_pred hcC-CceEEEEEeCCC
Q 042081 207 YLT-NKKYFIVLDDYC 221 (422)
Q Consensus 207 ~L~-~kr~LlVLDdv~ 221 (422)
.++ ..-=++++|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 443 222367788643
No 175
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.88 E-value=0.011 Score=50.52 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999977
No 176
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.87 E-value=0.13 Score=48.78 Aligned_cols=127 Identities=16% Similarity=0.101 Sum_probs=68.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEE----------------EeCCCC------CHH------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWV----------------RVSIAY------NFR------------ 173 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv----------------~vs~~~------~~~------------ 173 (422)
-.+++|+|..|+|||||.+.+.--.. ...+.+++ .+.+.+ ++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 45899999999999999999985211 11111111 112221 221
Q ss_pred ---HHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEE
Q 042081 174 ---MILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVL 245 (422)
Q Consensus 174 ---~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~il 245 (422)
+-..++++.++..... ..+.. ..-+...-.|...|-.++-+|+||.--.. +...-..+...+.. ...|..||
T Consensus 103 ~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 182 (348)
T 3d31_A 103 KDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182 (348)
T ss_dssp CCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1234556666554321 12222 33344445677778888889999974311 33333333333321 12366789
Q ss_pred EeecChhHhhhc
Q 042081 246 MTVTDPDFLSSF 257 (422)
Q Consensus 246 vTTR~~~va~~~ 257 (422)
++|.+...+..+
T Consensus 183 ~vTHd~~~~~~~ 194 (348)
T 3d31_A 183 HITHDQTEARIM 194 (348)
T ss_dssp EEESCHHHHHHH
T ss_pred EEeCCHHHHHHh
Confidence 999987665543
No 177
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.86 E-value=0.017 Score=54.06 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999999876
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.85 E-value=0.015 Score=50.09 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 179
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.80 E-value=0.031 Score=54.95 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHHHHHH
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDDIIKS 182 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~ 182 (422)
++++.|..-. +-+-++|.|..|+|||+|++.+.++. .+.+-+..+++-+++.. ...+++.++...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665422 24578999999999999999998742 12333557778888764 345677777654
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.80 E-value=0.013 Score=49.31 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 181
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.79 E-value=0.02 Score=50.62 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.+||.|.|++|+||||+|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999987
No 182
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.78 E-value=0.017 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 183
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.75 E-value=0.016 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999986
No 184
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.72 E-value=0.018 Score=48.24 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 185
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.72 E-value=0.02 Score=51.45 Aligned_cols=24 Identities=4% Similarity=0.129 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 186
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.71 E-value=0.012 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=17.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 187
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.70 E-value=0.018 Score=48.65 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999887
No 188
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.68 E-value=0.02 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 55899999999999999999976
No 189
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.67 E-value=0.018 Score=49.36 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 190
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.64 E-value=0.16 Score=50.41 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcCC-------CCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 113 GREELFDLLIEGQ-------PQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 113 ~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+.|.+.|.... ....+++|+|..|+|||||++.+..
T Consensus 271 l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 271 LKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 3455555554321 2467999999999999999999876
No 191
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.61 E-value=0.058 Score=47.44 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=34.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCcc---C-CcceeEEEEeCCCCCHHHHHHHHHHHh
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVK---F-YFDCHAWVRVSIAYNFRMILDDIIKSV 183 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~il~~l 183 (422)
.-.+++|+|..|+|||||++.+....... . .-...+|+.....+.... +..+++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~ 83 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 83 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence 35799999999999999999997521111 1 123477777655444333 33344443
No 192
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.59 E-value=0.02 Score=49.91 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 193
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.58 E-value=0.08 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...++.|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999998876
No 194
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.57 E-value=0.046 Score=51.35 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 195
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.57 E-value=0.038 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 196
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.56 E-value=0.019 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 197
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.55 E-value=0.047 Score=50.94 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 198
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.52 E-value=0.09 Score=49.53 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHHHhc
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILRDYL 208 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 208 (422)
.+++|+|..|+|||||++.+..- +. .-...+.+.-........ .......-. ..-......+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~----------~~~~i~~~~-ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKH----------HKNYTQLFF-GGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSS----------CSSEEEEEC-BTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeecccccc----------chhEEEEEe-CCChhHHHHHHHHh
Confidence 48999999999999999999873 22 123444443221111000 000000000 01123455667778
Q ss_pred CCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHh
Q 042081 209 TNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 209 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 254 (422)
..++=+|+||..- +.+.++.+. .+..+ +.-+|+||......
T Consensus 238 ~~~p~ilildE~~--~~e~~~~l~-~~~~g--~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 238 RMRPDRIILGELR--SSEAYDFYN-VLCSG--HKGTLTTLHAGSSE 278 (330)
T ss_dssp TSCCSEEEECCCC--STHHHHHHH-HHHTT--CCCEEEEEECSSHH
T ss_pred hhCCCEEEEcCCC--hHHHHHHHH-HHhcC--CCEEEEEEcccHHH
Confidence 8888899999987 555555443 33221 22377787765543
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.52 E-value=0.022 Score=49.47 Aligned_cols=24 Identities=8% Similarity=0.246 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.52 E-value=0.024 Score=47.42 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-.+++|+|..|.|||||.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999986
No 201
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.50 E-value=0.016 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 202
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.50 E-value=0.021 Score=49.77 Aligned_cols=23 Identities=4% Similarity=-0.143 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 203
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.50 E-value=0.023 Score=49.15 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887
No 204
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.45 E-value=0.16 Score=50.78 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHh
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSV 183 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 183 (422)
.-.++.|.|.+|+||||||.+++.+...... ..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHHHHHH
Confidence 4568899999999999999998874222211 1466776544 4566666665443
No 205
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.44 E-value=0.029 Score=55.17 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc-ceeEEEEeCCCCC-HHHHHHHHH
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF-DCHAWVRVSIAYN-FRMILDDII 180 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~il 180 (422)
.++.|..-. .-+.++|+|..|+|||||+..+..+ ....+ +..+++.+++..+ ..+++.++.
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 345554321 1236889999999999999988873 22222 3456667776543 345555454
No 206
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.39 E-value=0.022 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 207
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.38 E-value=0.12 Score=48.78 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHh
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSV 183 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 183 (422)
.-.++.|.|.+|+||||||..++.+.... . ..++|++. .-+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g-~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND-D-RGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-T-CEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeC--CCCHHHHHHHHHHHh
Confidence 34689999999999999999987742221 1 23566654 345667766665543
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.37 E-value=0.023 Score=48.83 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|..|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 209
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.36 E-value=0.027 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999977
No 210
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.36 E-value=0.023 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++|+|.+|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999874
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.32 E-value=0.021 Score=51.85 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHhc----------CCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIE----------GQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.|.+.+.. +....+-+.|+|.+|+|||+||+.+++.
T Consensus 15 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 15 GNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 777777776665531 1111233679999999999999999983
No 212
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.32 E-value=0.028 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 213
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.32 E-value=0.025 Score=49.83 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 214
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.31 E-value=0.17 Score=48.47 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 115 EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 115 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-++++.|..-. .-+-++|+|.+|+|||+|++.+.+
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 35677776532 245789999999999999998887
No 215
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.31 E-value=0.043 Score=54.27 Aligned_cols=43 Identities=23% Similarity=0.181 Sum_probs=32.2
Q ss_pred hhhhhHHHHH---HHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELF---DLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.++.++.+. +++..+....+-+.++|++|+|||+||+.+.+.
T Consensus 41 G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 8888777544 444444333456889999999999999999983
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.28 E-value=0.029 Score=49.08 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.28 E-value=0.026 Score=48.83 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 218
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.27 E-value=0.013 Score=56.07 Aligned_cols=51 Identities=10% Similarity=-0.081 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCcc---CCcceeEEEEeCCCC
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVK---FYFDCHAWVRVSIAY 170 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~ 170 (422)
++++.+..-. .-..++|+|..|+|||||++.+.+ .+. ..+. ++++-+++..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCee-EEEEEecCCh
Confidence 4556555432 246899999999999999998876 221 1233 3456677654
No 219
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.26 E-value=0.05 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++|+|..|+||||++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999998875
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.25 E-value=0.024 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~ 149 (422)
-.+++|+|..|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 5699999999999999999887
No 221
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.24 E-value=0.053 Score=51.40 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhcC--CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 112 SGREELFDLLIEG--QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 112 ~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+++++.|... ......|.|+|+.|+||||+++.++.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455566555421 22466789999999999999998876
No 222
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.24 E-value=0.025 Score=50.01 Aligned_cols=112 Identities=10% Similarity=0.114 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCC-----------CCHHHHHHHHHHH------hCCCCCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIA-----------YNFRMILDDIIKS------VMPPSRV 189 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----------~~~~~~~~~il~~------l~~~~~~ 189 (422)
.-.+++|+|+.|+|||||.+.+...... ..+...+.++-... |.....+..+... +......
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p-~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPL-YDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT-TTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC-CceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 3569999999999999999999873211 01222222211000 1111222222210 0000000
Q ss_pred CccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHh
Q 042081 190 SVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 254 (422)
.+.. ...+.+.+... -++||| + +......+...++ .+..|+++|.+...+
T Consensus 94 ---yg~~----~~~v~~~l~~G-~illLD-L---D~~~~~~i~~~l~---~~~tI~i~th~~~~l 143 (219)
T 1s96_A 94 ---YGTS----REAIEQVLATG-VDVFLD-I---DWQGAQQIRQKMP---HARSIFILPPSKIEL 143 (219)
T ss_dssp ---EEEE----HHHHHHHHTTT-CEEEEE-C---CHHHHHHHHHHCT---TCEEEEEECSSHHHH
T ss_pred ---CCCC----HHHHHHHHhcC-CeEEEE-E---CHHHHHHHHHHcc---CCEEEEEECCCHHHH
Confidence 0011 12344455433 467888 4 6777788888776 367788888876544
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.23 E-value=0.029 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999874
No 224
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.19 E-value=0.026 Score=49.43 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 225
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.13 E-value=0.012 Score=51.43 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|..|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 226
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.13 E-value=0.024 Score=50.01 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 227
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.08 E-value=0.03 Score=50.30 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+++|+|..|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999975
No 228
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.04 E-value=0.025 Score=48.81 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+++|+|..|+|||||.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998876
No 229
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.04 E-value=0.029 Score=49.15 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.95 E-value=0.02 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH-c
Q 042081 128 LSVVAILDSSGFDKTAFAADTY-N 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~-~ 150 (422)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 231
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.94 E-value=0.11 Score=52.95 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH-H
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR-D 206 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~-~ 206 (422)
.+++.|.|.+|.||||++..+... .... ...+.+...... ....+.+.++... .+...+..... .
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~----Aa~~L~e~~~~~a-------~Tih~ll~~~~~~ 269 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGK----AARRLGEVTGRTA-------STVHRLLGYGPQG 269 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHH----HHHHHHHHHTSCE-------EEHHHHTTEETTE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHH----HHHHhHhhhcccH-------HHHHHHHcCCcch
Confidence 368889999999999999888762 2111 123334332221 1222222222211 11111100000 0
Q ss_pred hcC-----CceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee
Q 042081 207 YLT-----NKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 207 ~L~-----~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 248 (422)
+.. .+.-+||+|.+..-+...+..+...++ .+.++|+.-
T Consensus 270 ~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 270 FRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp ESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred hhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 000 022489999987667777888887776 356666643
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.89 E-value=0.029 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999875
No 233
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.87 E-value=0.033 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 234
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.87 E-value=0.21 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998874
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.86 E-value=0.03 Score=50.46 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
+.|+|.+|+|||||++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999984
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.86 E-value=0.03 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.85 E-value=0.026 Score=51.06 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+|.|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.82 E-value=0.018 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 239
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.82 E-value=0.029 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999875
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.76 E-value=0.03 Score=52.64 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|+++.++.+...+..+ .-+.++|.+|+|||+||+.+.+
T Consensus 31 g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 31 GQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp SCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 8888888888888764 2577999999999999999988
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.73 E-value=0.049 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+.++|.+|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999998
No 242
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.73 E-value=0.044 Score=54.71 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..++.+...+..+ .-|.++|.+|+|||+||+.+.+.
T Consensus 26 Gq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp SCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 8888888888877764 36789999999999999999983
No 243
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.70 E-value=0.041 Score=49.63 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...++.++|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467889999999999999999985
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.69 E-value=0.039 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..++.|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999887
No 245
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.68 E-value=0.038 Score=52.18 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 246
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.66 E-value=0.29 Score=48.05 Aligned_cols=59 Identities=17% Similarity=-0.016 Sum_probs=38.1
Q ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhC
Q 042081 123 EGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVM 184 (422)
Q Consensus 123 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 184 (422)
.+=..-.++.|.|.+|+||||||..++.+...... ..++|++.. -+..++...++....
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 44334568999999999999999998874221111 236676654 445667776665443
No 247
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.65 E-value=0.043 Score=51.67 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+..+|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 248
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.60 E-value=0.29 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-.+++|+|..|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 249
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.60 E-value=0.075 Score=51.02 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 115 EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 115 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+++.+.-.-+...+++|+|+.|.|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433333467999999999999999999986
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.58 E-value=0.036 Score=50.88 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC-C-CCCcEEEEeecChhHhhhc
Q 042081 198 QLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE-N-QNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 198 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~-~~gs~ilvTTR~~~va~~~ 257 (422)
+...-.|...|..++-+|+||.--.. ++..-..+...+.. . ..|..||++|.+...+...
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~ 210 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY 210 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHh
Confidence 33445567777778889999974311 33333333333321 1 1267788888886665543
No 251
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.56 E-value=0.04 Score=48.42 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.55 E-value=0.036 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.54 E-value=0.04 Score=48.68 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 254
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.53 E-value=0.06 Score=44.73 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 255
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.50 E-value=0.17 Score=49.64 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
.-.++.|.|.+|+||||||..++.+...+ . ..++|++... +..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-CEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-CEEEEEECCC--CHHHHHHHHHH
Confidence 45689999999999999999988742222 1 2466665443 33445555443
No 256
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.34 Score=49.51 Aligned_cols=130 Identities=9% Similarity=0.031 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcc-C-Cc-c-eeEEEEeC--CCC--CH--------------HHHHHHHHHHhCCC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVK-F-YF-D-CHAWVRVS--IAY--NF--------------RMILDDIIKSVMPP 186 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~-~F-~-~~~wv~vs--~~~--~~--------------~~~~~~il~~l~~~ 186 (422)
.+++|+|..|+|||||++.+.--..-. + .. . .+.++.-. ..+ ++ .....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998532111 0 00 0 12222110 001 11 12334455555543
Q ss_pred CCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhhcc
Q 042081 187 SRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 187 ~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~~~ 258 (422)
... ..+.. ..-+...-.|...|..++=+|+||.=-.. +...-..+...+.. ...|..||++|.+...+..++
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a 535 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA 535 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 221 12222 33344455677788888889999964211 33222223222221 123667888999877766543
No 257
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.49 E-value=0.041 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 56899999999999999999975
No 258
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.48 E-value=0.041 Score=48.15 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 259
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.47 E-value=0.042 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 260
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.44 E-value=0.039 Score=49.53 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 261
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.44 E-value=0.044 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 262
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.41 E-value=0.079 Score=47.06 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999883
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.37 E-value=0.04 Score=50.00 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 264
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.37 E-value=0.045 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 265
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.36 E-value=0.046 Score=50.53 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 266
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.36 E-value=0.041 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999975
No 267
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.35 E-value=0.041 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
+.|+|..|+|||||++.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999999984
No 268
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.35 E-value=0.45 Score=51.18 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcc----eeEEEEeCCC-------CCH-----------HHHHHHHHHHhCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFD----CHAWVRVSIA-------YNF-----------RMILDDIIKSVMP 185 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~-------~~~-----------~~~~~~il~~l~~ 185 (422)
-.+++|+|..|+|||||.+.+..- .+. .++ .. .+.+.+. .++ .+-..++++.++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCcccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 458999999999999999999842 111 111 01 1222221 111 1223455666665
Q ss_pred CC---CCCccCCCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhc
Q 042081 186 PS---RVSVVIGEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSF 257 (422)
Q Consensus 186 ~~---~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~ 257 (422)
.. ......-..-+...-.|...|-.++-+|+||.--+. +...-..+...+.. .|..||++|.+...+..+
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 31 111111123333344555566667779999964321 34444444444433 367789999987766543
No 269
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.31 E-value=0.11 Score=44.93 Aligned_cols=50 Identities=8% Similarity=-0.122 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
.|+|-|.-|+||||+++.+.+ ..+..-..++.+.-.......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 477889999999999999987 44333222344433333334444555443
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.31 E-value=0.052 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 271
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.30 E-value=0.048 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999999875
No 272
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.30 E-value=0.051 Score=48.31 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.27 E-value=0.042 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.27 E-value=0.069 Score=46.48 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+..+..++.. -++...+.|+|++|.||||+|..+++
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4555555543 22345689999999999999998887
No 275
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.25 E-value=0.049 Score=47.66 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+|.|.|++|+||+|+|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 276
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.23 E-value=0.055 Score=52.89 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccC-Ccc-eeEEEEeCCCC-CHHHHHHHHHHHhCCC-------
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKF-YFD-CHAWVRVSIAY-NFRMILDDIIKSVMPP------- 186 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~-~~~~~~~~il~~l~~~------- 186 (422)
.++.|..-. .-+-++|.|..|+|||+|+.++.+...... +=+ ..+++-+++.. ...++..++...=...
T Consensus 141 aID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~a 219 (465)
T 3vr4_D 141 AIDHLNTLV-RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMN 219 (465)
T ss_dssp HHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEE
T ss_pred EEecccccc-cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEE
Confidence 455554422 123468899999999999999998544311 111 46667677654 4456666654421000
Q ss_pred CCCCccC-CCCHHHHHHHHHHhc---CCceEEEEEeCCC
Q 042081 187 SRVSVVI-GEDYQLKKSILRDYL---TNKKYFIVLDDYC 221 (422)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~l~~~L---~~kr~LlVLDdv~ 221 (422)
.....+. -.-.....-.+.+++ +++.+||++||+-
T Consensus 220 tsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 220 LANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0000000 001111222345554 3789999999984
No 277
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.22 E-value=0.05 Score=50.94 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|+|+.|+||||||..+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.17 E-value=0.055 Score=49.22 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccC---CCCHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVI---GEDYQLKKSI 203 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~---~~~~~~~~~~ 203 (422)
.-.+++|+|..|+|||||.+.+.. .+...+.+.+.+.-. +.. .+......-.++ ..+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~-~i~----------~~~~~~~~~v~q~~~gl~~~~l~~~ 90 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIED-PIE----------YVFKHKKSIVNQREVGEDTKSFADA 90 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEES-SCC----------SCCCCSSSEEEEEEBTTTBSCHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCC-cce----------eecCCcceeeeHHHhCCCHHHHHHH
Confidence 357999999999999999999876 222112333333211 100 000000000000 0011223556
Q ss_pred HHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHhh
Q 042081 204 LRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLS 255 (422)
Q Consensus 204 l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~ 255 (422)
+...|..++=+|++|..- +.+....+.... ..|.-|++||.+..+..
T Consensus 91 la~aL~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHHHHhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 666666667789999886 555544444332 24667899998866443
No 279
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.17 E-value=0.066 Score=45.29 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=24.6
Q ss_pred HHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 120 LLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 120 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.+.........|.|+|.+|+|||||...+...
T Consensus 8 ~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 8 KLKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp HCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred HHhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 33333234677899999999999999998874
No 280
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.16 E-value=0.098 Score=51.78 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCCHHHHH-HHHHcCCCccCCcce-eEEEEeCCCCC-HHHHHHHHHHHhC--------CCCCCCccCCC-
Q 042081 128 LSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDC-HAWVRVSIAYN-FRMILDDIIKSVM--------PPSRVSVVIGE- 195 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~- 195 (422)
-+-++|.|..|+|||+|| ..+.+.. . -+. .+++-+++... ..++..++...=. ...+.+.....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 346789999999999995 5777743 2 343 56777776643 3444444433110 00111000001
Q ss_pred ---CHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 196 ---DYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 196 ---~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
.--.+.+.++. +++.+||++||+.
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 12233334444 5899999999974
No 281
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.14 E-value=0.03 Score=51.87 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 282
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.13 E-value=0.067 Score=43.80 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-|.++|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 283
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.12 E-value=0.046 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.11 E-value=0.046 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 285
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.11 E-value=0.042 Score=53.96 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=56.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCc--ceeEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYF--DCHAWVRVSIAY-NFRMILDDIIKSVMPPSR----- 188 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~----- 188 (422)
.++.|..-. .-+-++|.|..|+|||+|+.++.++....+.= +..+++-+++.. ...++..++...=.....
T Consensus 142 ~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 455555422 23456788999999999999999865442211 246666666654 455666666543111100
Q ss_pred -CCccCC--CCHHHHHHHHHHhcC---CceEEEEEeCC
Q 042081 189 -VSVVIG--EDYQLKKSILRDYLT---NKKYFIVLDDY 220 (422)
Q Consensus 189 -~~~~~~--~~~~~~~~~l~~~L~---~kr~LlVLDdv 220 (422)
...|.. .-.....-.+.++++ ++.+||++||+
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 000000 011122223444544 68999999996
No 286
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.09 E-value=0.046 Score=46.39 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 287
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.07 E-value=0.058 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..++|+|+|-||+||||+|..+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 578999999999999999988775
No 288
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.07 E-value=0.049 Score=49.18 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999876
No 289
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.03 E-value=0.067 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 290
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.02 E-value=0.048 Score=49.71 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999875
No 291
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.99 E-value=0.057 Score=52.47 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 115 EELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 115 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.++.+.|........+++|+|..|+|||||.+.+..
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 344444443323467999999999999999999986
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.99 E-value=0.076 Score=45.16 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 293
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.97 E-value=0.093 Score=51.93 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHH-HHHHcCCCccCCcce-eEEEEeCCCC-CHHHHHHHHHH
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDC-HAWVRVSIAY-NFRMILDDIIK 181 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~il~ 181 (422)
+.++.|..-. .-+-++|.|..|+|||+|| ..+.+.. .-+. .+++-+++.. .+.++..++..
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 3455555421 2346889999999999996 5777732 2443 4677777664 34556666554
No 294
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.97 E-value=0.05 Score=49.98 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999975
No 295
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.94 E-value=0.051 Score=49.18 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-CC---cceeEEEEeCC----CCCH----------------------HHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-FY---FDCHAWVRVSI----AYNF----------------------RMILD 177 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~---F~~~~wv~vs~----~~~~----------------------~~~~~ 177 (422)
-.+++|+|..|+|||||.+.+..-..-. +. ...+.++.-.. ..++ .+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 4589999999999999999998631110 00 01122331110 0011 12234
Q ss_pred HHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChh
Q 042081 178 DIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPD 252 (422)
Q Consensus 178 ~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~ 252 (422)
++++.++..... ..+.. ..-+...-.+...|..++-+|+||.--.. +...-..+...+.. ...|..||++|.+..
T Consensus 111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 455555443211 11111 22233333455556666779999975321 33333333333321 122667999999876
Q ss_pred Hhhh
Q 042081 253 FLSS 256 (422)
Q Consensus 253 va~~ 256 (422)
.+..
T Consensus 191 ~~~~ 194 (253)
T 2nq2_C 191 QVVA 194 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 296
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.92 E-value=0.038 Score=54.03 Aligned_cols=104 Identities=12% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCcc--------CCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCC
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVK--------FYFD-CHAWVRVSIAY-NFRMILDDIIKSVMPP 186 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~il~~l~~~ 186 (422)
.++.|..-. .-+-++|.|..|+|||+|+.++.+..... ++=+ ..+++-+++.. ...++..++...=...
T Consensus 137 aID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLV-RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCB-TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 445454422 23456788999999999999999865431 1112 45666676654 3455555544320000
Q ss_pred C------CCCccCC--CCHHHHHHHHHHhc---CCceEEEEEeCCC
Q 042081 187 S------RVSVVIG--EDYQLKKSILRDYL---TNKKYFIVLDDYC 221 (422)
Q Consensus 187 ~------~~~~~~~--~~~~~~~~~l~~~L---~~kr~LlVLDdv~ 221 (422)
. ....|.. .-.....-.+.+++ +++.+||++||+-
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 0000000 01111222345554 3789999999984
No 297
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.90 E-value=0.055 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999887
No 298
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.87 E-value=0.069 Score=49.60 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 367899999999999999999987
No 299
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.85 E-value=0.054 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999998875
No 300
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.84 E-value=0.055 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 301
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.84 E-value=0.05 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|.|..|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999877
No 302
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.84 E-value=0.16 Score=50.25 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=54.4
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHH-HHHHcCCCccCCcce-eEEEEeCCCC-CHHHHHHHHHHHhCCCCCCC--c
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDC-HAWVRVSIAY-NFRMILDDIIKSVMPPSRVS--V 191 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~--~ 191 (422)
.++.|..-. .-+-++|.|..|+|||+|| ..+.+.. .-+. .+++-+++.. ...++..++...=......- .
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 455555422 2356789999999999995 5777732 2343 4677777664 34556666654221111000 0
Q ss_pred cCCCC-HHH-----HHHHHHHhc--CCceEEEEEeCCC
Q 042081 192 VIGED-YQL-----KKSILRDYL--TNKKYFIVLDDYC 221 (422)
Q Consensus 192 ~~~~~-~~~-----~~~~l~~~L--~~kr~LlVLDdv~ 221 (422)
+.+.. ... ..-.+.+++ +++.+||++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 00011 111 112233333 5799999999984
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.82 E-value=0.065 Score=47.72 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999886
No 304
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.81 E-value=0.13 Score=48.74 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+++.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443333334578999999999999999998864
No 305
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.81 E-value=0.36 Score=42.69 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC-CCccCCc-ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC--
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN-NHVKFYF-DCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-- 189 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-- 189 (422)
.++++..+..+ +.+.|+|..|+||||+...+.-+ ....... ...+.+.........++...+...++.....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 34445555443 57899999999999866544321 1111112 2233333333233344555555544432110
Q ss_pred --------Cc--cC----CCCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 190 --------SV--VI----GEDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 190 --------~~--~~----~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
.. +. ..+...+...+...+.+-+ +||+|.+.
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah 186 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGIS-HVIVDEIH 186 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCC-EEEECCTT
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCc-EEEEECCc
Confidence 00 00 0356667777766555444 78999996
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.78 E-value=0.1 Score=43.45 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999875
No 307
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.77 E-value=0.071 Score=49.41 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999886
No 308
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.76 E-value=0.11 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+++.+.-.-....+++|+|.+|+|||||...+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444443333578999999999999999999874
No 309
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.73 E-value=0.065 Score=43.88 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.73 E-value=0.1 Score=48.49 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457899999999999999999886
No 311
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.70 E-value=0.052 Score=51.20 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.+..+..+...+.... ..-+.|+|.+|+|||+||+.+.+.
T Consensus 28 G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 28 GQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp SCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 87776665544444322 233889999999999999999873
No 312
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.66 E-value=0.17 Score=58.32 Aligned_cols=88 Identities=11% Similarity=-0.004 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 205 (422)
..+++.|+|++|+|||+||.++... ....=...+|+++...++... ++.++.+... ...+....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4679999999999999999998773 222112467787777776555 4445422111 0111134455566666
Q ss_pred HhcC-CceEEEEEeCCC
Q 042081 206 DYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~-~kr~LlVLDdv~ 221 (422)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 467799999983
No 313
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.63 E-value=0.071 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999988876
No 314
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.63 E-value=0.075 Score=47.44 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 315
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.57 E-value=0.065 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..+++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 316
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.56 E-value=0.16 Score=44.57 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+|.|.|..|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.55 E-value=0.073 Score=43.87 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999875
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.53 E-value=0.082 Score=44.67 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.49 E-value=0.096 Score=43.25 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4468899999999999999998753
No 320
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.40 E-value=0.077 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999999864
No 321
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.40 E-value=0.18 Score=45.59 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
+.++.+.+.....+...|+|+|..|+|||||...+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334455555544456778999999999999999998753
No 322
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.35 E-value=0.077 Score=45.01 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998753
No 323
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.32 E-value=0.074 Score=48.60 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 042081 130 VVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 324
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.31 E-value=0.082 Score=43.42 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.-|.|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999998753
No 325
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.25 E-value=0.19 Score=45.66 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 112 SGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 112 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..+.+++..+.........|.++|.+|+|||||...+....
T Consensus 23 ~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444555455444446678899999999999999998753
No 326
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.22 E-value=0.09 Score=48.31 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.++|+|.|.||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 36888899999999999988876
No 327
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.10 E-value=0.083 Score=46.92 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSI 168 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 168 (422)
-.++.|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 468999999999999998887652 111112466776544
No 328
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.10 E-value=0.095 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-..|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999987
No 329
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.05 E-value=0.11 Score=42.64 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999875
No 330
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.03 E-value=0.074 Score=49.13 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=32.8
Q ss_pred HHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhc-CCCCCCcEEEEeecChhHhhh
Q 042081 203 ILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVL-PENQNGSRVLMTVTDPDFLSS 256 (422)
Q Consensus 203 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l-~~~~~gs~ilvTTR~~~va~~ 256 (422)
.+...|..++-+|+||.--.. +...-..+...+ .....|..||++|.+...+..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 455555566678999975321 444445555542 222346779999998776543
No 331
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.03 E-value=0.093 Score=43.25 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 042081 130 VVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 332
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.02 E-value=0.094 Score=43.25 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
--|.|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 333
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.089 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.95 E-value=0.098 Score=42.89 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998865
No 335
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.93 E-value=0.13 Score=50.45 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=31.8
Q ss_pred hhhhhHHHHHHHHhcC------------CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEG------------QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.++.++.|...+... ....+-|.++|++|+||||+|+.+..
T Consensus 19 Gqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 7777777777666321 11245688999999999999999988
No 336
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.92 E-value=0.089 Score=44.11 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.91 E-value=0.054 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 56899999999999999999975
No 338
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.87 E-value=0.099 Score=43.67 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 35678899999999999999988753
No 339
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.83 E-value=0.098 Score=44.21 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999875
No 340
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.81 E-value=0.5 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 56899999999999999998875
No 341
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.75 E-value=0.1 Score=44.32 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999888764
No 342
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.73 E-value=0.1 Score=44.05 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+.+|+|..|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999865
No 343
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.73 E-value=0.094 Score=49.90 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Cc----------------ceeEEEEeCC----CCC-------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YF----------------DCHAWVRVSI----AYN------------- 171 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F----------------~~~~wv~vs~----~~~------------- 171 (422)
-.+++|+|+.|.|||||.+.+.--..-.. .| ..+.+|.-.. ..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~ 109 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK 109 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975211000 00 1122221000 001
Q ss_pred -----HHHHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCC--CCCC
Q 042081 172 -----FRMILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPE--NQNG 241 (422)
Q Consensus 172 -----~~~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~--~~~g 241 (422)
..+-..++++.++..... ..+.. ..-+...-.|...|-.++-+|+||.=-. -+...-..+...+.. ...|
T Consensus 110 ~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g 189 (359)
T 3fvq_A 110 GRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189 (359)
T ss_dssp CCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 112344566666554211 12222 3344445567777778888999996431 133222333221110 1236
Q ss_pred cEEEEeecChhHhhhcc
Q 042081 242 SRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 242 s~ilvTTR~~~va~~~~ 258 (422)
..||++|.+...+..++
T Consensus 190 ~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 190 KSAVFVSHDREEALQYA 206 (359)
T ss_dssp CEEEEECCCHHHHHHHC
T ss_pred CEEEEEeCCHHHHHHHC
Confidence 77999999987766543
No 344
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.72 E-value=0.59 Score=50.28 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCCCCCCcEEEEeecChhHhhhcc
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPENQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va~~~~ 258 (422)
...-.|...|..++-|||||.=-+ -+......+...+... |..||++|.+...+..++
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~ 965 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLT 965 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhC
Confidence 334456666777888999996321 1455555555555432 346888888877665443
No 345
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.67 E-value=0.13 Score=42.92 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...-|.|+|..|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999999875
No 346
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.66 E-value=0.11 Score=43.31 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 347
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.65 E-value=0.094 Score=43.18 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 348
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.63 E-value=0.19 Score=45.53 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..-+..||....++..-|.++|++|.|||.+|..+.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3445566655424456799999999999999999988
No 349
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.62 E-value=0.11 Score=42.90 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999865
No 350
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.62 E-value=0.12 Score=44.91 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
....|.|+|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999875
No 351
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.59 E-value=0.1 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|+.|+||||||..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 35899999999999999999886
No 352
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.59 E-value=1.1 Score=38.62 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 353
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.58 E-value=0.13 Score=43.12 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999875
No 354
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.58 E-value=0.23 Score=41.89 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...+.+ +... ...-|.|+|..|+|||||...+...
T Consensus 5 ~~~~~~-~~~~--~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNH--QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTT--SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCC--CccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 4442 3567889999999999999999864
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.57 E-value=0.13 Score=43.23 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999998753
No 356
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.56 E-value=0.33 Score=55.95 Aligned_cols=88 Identities=11% Similarity=-0.006 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 205 (422)
.-.++.|.|.+|+||||||.++.... ...=..++|++....++... ++.++.+... ...+..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 46799999999999999999998742 22112578888877776532 4555543221 0111256677777776
Q ss_pred HhcC-CceEEEEEeCCC
Q 042081 206 DYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~-~kr~LlVLDdv~ 221 (422)
...+ .+.-|||+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 5543 456699999875
No 357
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.55 E-value=0.11 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4568899999999999999988753
No 358
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.54 E-value=0.11 Score=42.70 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 359
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.53 E-value=0.07 Score=48.34 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
....|.|.|..|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998776
No 360
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.52 E-value=0.13 Score=42.46 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999864
No 361
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.50 E-value=0.1 Score=42.81 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
|.|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 362
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.49 E-value=0.11 Score=43.16 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..-|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 5678899999999999999998754
No 363
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.48 E-value=0.097 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..--|.|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999765
No 364
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.48 E-value=0.12 Score=43.96 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999999875
No 365
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.46 E-value=0.14 Score=42.98 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..-|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998643
No 366
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.46 E-value=0.13 Score=43.55 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
...|.|+|..|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 5578899999999999999998753
No 367
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.44 E-value=0.11 Score=49.50 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Cc------------ceeEEEEeC----CCCCHH---------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVS----IAYNFR--------------- 173 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F------------~~~~wv~vs----~~~~~~--------------- 173 (422)
-.+++|+|..|+|||||.+.+.--..-.. .| ..+.+|.-. ...++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~ 120 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKD 120 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH
Confidence 46899999999999999999975211000 00 112233111 011111
Q ss_pred ---HHHHHHHHHhCCCCC-CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEE
Q 042081 174 ---MILDDIIKSVMPPSR-VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVL 245 (422)
Q Consensus 174 ---~~~~~il~~l~~~~~-~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~il 245 (422)
+-..++++.++.... ...+.. ..-+...-.|...|..++-+|+||.--.. +...-..+...+.. ...|..||
T Consensus 121 ~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 200 (355)
T 1z47_A 121 EMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200 (355)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 123445565554321 112222 33334445677777788889999974311 33332333332221 11266789
Q ss_pred EeecChhHhhhcc
Q 042081 246 MTVTDPDFLSSFD 258 (422)
Q Consensus 246 vTTR~~~va~~~~ 258 (422)
++|.+...+..++
T Consensus 201 ~vTHd~~~a~~~a 213 (355)
T 1z47_A 201 FVTHDQEEALEVA 213 (355)
T ss_dssp EECSCHHHHHHHC
T ss_pred EECCCHHHHHHhC
Confidence 9999977665543
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.41 E-value=0.11 Score=44.19 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999874
No 369
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.39 E-value=0.11 Score=43.85 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999875
No 370
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.38 E-value=0.41 Score=51.37 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHH
Q 042081 128 LSVVAILDSSGFDKTAFAADT 148 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v 148 (422)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999988
No 371
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.36 E-value=0.13 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999875
No 372
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.34 E-value=0.12 Score=43.11 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 446889999999999999998864
No 373
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.33 E-value=0.15 Score=45.24 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-..|.|.|+.|+||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 374
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.32 E-value=0.1 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.30 E-value=0.12 Score=43.54 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998753
No 376
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.29 E-value=0.11 Score=44.10 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999987765
No 377
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.25 E-value=0.12 Score=42.93 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--|.|+|..|+|||||...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 378
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.22 E-value=0.25 Score=56.11 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CccCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-SVVIGEDYQLKKSILR 205 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 205 (422)
.-+++.|.|.+|+||||||.++.... ...=..++|++....++.. .++.++.+... ...+..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 45799999999999999999987742 2222358888888777653 25555543221 0111245666666666
Q ss_pred HhcC-CceEEEEEeCCC
Q 042081 206 DYLT-NKKYFIVLDDYC 221 (422)
Q Consensus 206 ~~L~-~kr~LlVLDdv~ 221 (422)
...+ .+.-+||+|.+.
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
Confidence 5543 355699999986
No 379
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.21 E-value=0.099 Score=45.70 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.20 E-value=0.22 Score=43.62 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIK 181 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 181 (422)
..|.|.|..|+||||+++.+...-. ...+..+....-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999987321 123323333333222233455555554
No 381
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.20 E-value=0.13 Score=51.67 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999876
No 382
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.19 E-value=0.13 Score=51.02 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHH-HHHHcCCCc----cCCcc-eeEEEEeCCCCC-HHHHHHHHHH
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFA-ADTYNNNHV----KFYFD-CHAWVRVSIAYN-FRMILDDIIK 181 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~il~ 181 (422)
+.++.|..-. .-+-++|.|..|+|||+|| ..+.+.... .++-+ ..+++-+++... +.++..++..
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 3456565432 2346789999999999995 566663211 12344 367777877643 4556666554
No 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.18 E-value=0.12 Score=49.62 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=67.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Cc------------ceeEEEEeCCCC------CH--------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSIAY------NF-------------- 172 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F------------~~~~wv~vs~~~------~~-------------- 172 (422)
-.+++|+|..|.|||||.+.+.--..-.. .| ..+.+| .|.+ ++
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V--fQ~~~l~p~ltV~eni~~~~~~~~~~ 106 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV--FQSYALYPHLSVAENMSFGLKLAGAK 106 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE--CTTCCCCTTSCHHHHHTHHHHHTTCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE--ecCCcCCCCCCHHHHHHHHHHHcCCC
Confidence 46899999999999999999975211100 00 012222 1211 11
Q ss_pred ----HHHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCC--CCCCcE
Q 042081 173 ----RMILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPE--NQNGSR 243 (422)
Q Consensus 173 ----~~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~--~~~gs~ 243 (422)
.+-..++++.++..... ..+.. ..-+...-.|...|..++-+|+||.=-. -+...-..+...+.. ...|..
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~t 186 (381)
T 3rlf_A 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186 (381)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 12234555555543211 12222 2333334456666666777999996421 133333333333321 122677
Q ss_pred EEEeecChhHhhhcc
Q 042081 244 VLMTVTDPDFLSSFD 258 (422)
Q Consensus 244 ilvTTR~~~va~~~~ 258 (422)
||++|.+...+..++
T Consensus 187 ii~vTHd~~ea~~~a 201 (381)
T 3rlf_A 187 MIYVTHDQVEAMTLA 201 (381)
T ss_dssp EEEECSCHHHHHHHC
T ss_pred EEEEECCHHHHHHhC
Confidence 888999877665543
No 384
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.17 E-value=0.13 Score=43.21 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..-|.|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999998753
No 385
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.16 E-value=0.16 Score=43.04 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..--|.|+|..|+|||||...+..+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35578999999999999999998754
No 386
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.15 E-value=0.16 Score=42.82 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 387
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.14 E-value=0.12 Score=49.27 Aligned_cols=129 Identities=14% Similarity=0.093 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Cc------------ceeEEEEeCCCC------CH--------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSIAY------NF-------------- 172 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F------------~~~~wv~vs~~~------~~-------------- 172 (422)
-.+++|+|..|+|||||.+.+.--..-.. .| ..+.+| .+.+ ++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV--FQNYALYPHMTVFENIAFPLRARRIS 106 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE--CSSCCCCTTSCHHHHHHGGGSSSCSH
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 46899999999999999999975211000 00 112232 1111 11
Q ss_pred ----HHHHHHHHHHhCCCCC-CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcE
Q 042081 173 ----RMILDDIIKSVMPPSR-VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSR 243 (422)
Q Consensus 173 ----~~~~~~il~~l~~~~~-~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ 243 (422)
.+-..++++.++.... ...+.. ..-+...-.|...|-.++-+|+||.--.. +...-..+...+.. ...|..
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 186 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 1223456666655321 112222 33334444577777788889999964311 33332333332221 112567
Q ss_pred EEEeecChhHhhhcc
Q 042081 244 VLMTVTDPDFLSSFD 258 (422)
Q Consensus 244 ilvTTR~~~va~~~~ 258 (422)
||++|.+...+..++
T Consensus 187 vi~vTHd~~~~~~~a 201 (359)
T 2yyz_A 187 SVYVTHDQAEAMTMA 201 (359)
T ss_dssp EEEEESCHHHHHHHC
T ss_pred EEEEcCCHHHHHHhC
Confidence 899999977665443
No 388
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.14 E-value=0.13 Score=43.23 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--|.|+|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.13 E-value=0.34 Score=49.62 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..
T Consensus 45 G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp SCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred CchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 8888888877777654 4789999999999999999998
No 390
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.12 E-value=0.17 Score=44.10 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccCCcc
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVKFYFD 159 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 159 (422)
..|+|-|.-|+||||+++.+.. .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 5788999999999999999988 4444444
No 391
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.11 E-value=0.12 Score=49.25 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=68.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCccC---Cc------------ceeEEEEeCC----CCCHH---------------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVKF---YF------------DCHAWVRVSI----AYNFR--------------- 173 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F------------~~~~wv~vs~----~~~~~--------------- 173 (422)
-.+++|+|..|+|||||.+.+.--..... .| ..+.+|.-.. ..++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE 108 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 46899999999999999999975211000 00 1122331110 11111
Q ss_pred ---HHHHHHHHHhCCCCCC-CccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCC-CChhHHHHHHhhcCC--CCCCcEEE
Q 042081 174 ---MILDDIIKSVMPPSRV-SVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCE-ESDDVLDDLEEVLPE--NQNGSRVL 245 (422)
Q Consensus 174 ---~~~~~il~~l~~~~~~-~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~--~~~gs~il 245 (422)
+-..++++.++..... ..+.. ..-+...-.|...|..++-+|+||.=-. -+...-..+...+.. ...|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (362)
T 2it1_A 109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188 (362)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 1234456666554321 12222 3334444567777778888999996321 023222333332221 11266788
Q ss_pred EeecChhHhhhcc
Q 042081 246 MTVTDPDFLSSFD 258 (422)
Q Consensus 246 vTTR~~~va~~~~ 258 (422)
++|.+...+..++
T Consensus 189 ~vTHd~~~a~~~a 201 (362)
T 2it1_A 189 YVTHDQAEALAMA 201 (362)
T ss_dssp EEESCHHHHHHHC
T ss_pred EECCCHHHHHHhC
Confidence 9999877665443
No 392
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.10 E-value=0.13 Score=43.73 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..--|.|+|..|+|||||...+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35578999999999999999998753
No 393
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.09 E-value=0.13 Score=43.01 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999875
No 394
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.08 E-value=0.12 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 395
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.07 E-value=0.097 Score=43.78 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999875
No 396
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.05 E-value=0.13 Score=42.92 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999999875
No 397
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.05 E-value=0.13 Score=44.08 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..-|.|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 5578899999999999999998653
No 398
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.05 E-value=0.12 Score=45.72 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----Ccc-CCCCHHHHHHH
Q 042081 130 VVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRV-----SVV-IGEDYQLKKSI 203 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~-~~~~~~~~~~~ 203 (422)
.|.+.|.||+||||+|..+.... ....++. ..+.+...-+... ...+..+...... ... ...+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~V-~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVRV-MAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCCE-EEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCCE-EEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 47788999999999988887631 1223343 3344443222221 1122222211100 000 01233322
Q ss_pred HHHhcCCceEEEEEeCCCCC------ChhHHHHHHhhcCCCCCCcEEEEeecCh
Q 042081 204 LRDYLTNKKYFIVLDDYCEE------SDDVLDDLEEVLPENQNGSRVLMTVTDP 251 (422)
Q Consensus 204 l~~~L~~kr~LlVLDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 251 (422)
+. .+.=|+|+|+.-.. ...-|.++...++. |-.|+.|+...
T Consensus 81 L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 22 24559999976411 23467777665543 55688777654
No 399
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.03 E-value=0.18 Score=43.47 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+.++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 4567899999999999999988653
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.02 E-value=0.23 Score=44.32 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.|.|..|+||||+++.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 401
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.02 E-value=0.18 Score=41.65 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
No 402
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.02 E-value=0.13 Score=44.08 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35678999999999999999998753
No 403
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.98 E-value=0.12 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 45899999999999999999975
No 404
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.94 E-value=0.13 Score=49.27 Aligned_cols=131 Identities=8% Similarity=-0.035 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc------------C---CcceeEEEEeC----CC---------------CCH-
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK------------F---YFDCHAWVRVS----IA---------------YNF- 172 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------~---~F~~~~wv~vs----~~---------------~~~- 172 (422)
-.+++|+|..|+|||||.+.+.--.... . .-..+.+|.-. .. ...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 116 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 4689999999999999999997521100 0 00012222100 00 011
Q ss_pred --HHHHHHHHHHhCCCCCC-CccC-CCCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEE
Q 042081 173 --RMILDDIIKSVMPPSRV-SVVI-GEDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVL 245 (422)
Q Consensus 173 --~~~~~~il~~l~~~~~~-~~~~-~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~il 245 (422)
.+-..++++.++..... ..+. -..-+...-.|...|..++-+|+||.--.. +...-..+...+.. ...|..||
T Consensus 117 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 196 (372)
T 1v43_A 117 EIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196 (372)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 12345566666653211 1111 123333445566677777779999964311 33332333333321 11266789
Q ss_pred EeecChhHhhhcc
Q 042081 246 MTVTDPDFLSSFD 258 (422)
Q Consensus 246 vTTR~~~va~~~~ 258 (422)
++|.+...+..++
T Consensus 197 ~vTHd~~~a~~~a 209 (372)
T 1v43_A 197 YVTHDQVEAMTMG 209 (372)
T ss_dssp EEESCHHHHHHHC
T ss_pred EEeCCHHHHHHhC
Confidence 9999977665443
No 405
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.93 E-value=0.1 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~ 149 (422)
....|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999985
No 406
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.91 E-value=0.095 Score=45.07 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998763
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.14 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 408
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.89 E-value=0.13 Score=49.29 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=60.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCccC---CCCHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHA-WVRVSIAYNFRMILDDIIKSVMPPSRVSVVI---GEDYQLKKS 202 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~---~~~~~~~~~ 202 (422)
.-.+++|+|..|+|||||.+.+.. .+.....+.+ ++. .+... .+.... .-.++ +.+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e--~~~e~---------~~~~~~-~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIE--DPIEY---------VFKHKK-SIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEE--SSCCS---------CCCCSS-SEEEEEEBTTTBSCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEec--ccHhh---------hhccCc-eEEEeeecCCCHHHHHH
Confidence 357899999999999999999876 2221112333 222 11110 000000 00000 001122355
Q ss_pred HHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEeecChhHh
Q 042081 203 ILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTVTDPDFL 254 (422)
Q Consensus 203 ~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~va 254 (422)
.+...|...+=+|++|.+- +.+....+.... ..|..|+.|+...++.
T Consensus 201 ~l~~~L~~~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp HHHHHTTSCCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred HHHHHhhhCcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 7777787777799999997 666554444433 2466788888876543
No 409
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.86 E-value=0.13 Score=44.02 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999977763
No 410
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.86 E-value=0.14 Score=42.69 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|..|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998753
No 411
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.83 E-value=0.14 Score=43.54 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|..|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 412
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.77 E-value=0.18 Score=42.65 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998653
No 413
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.75 E-value=0.15 Score=43.72 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 414
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.74 E-value=0.096 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.018 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999988753
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.73 E-value=0.14 Score=44.28 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 5578899999999999999998753
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.70 E-value=0.14 Score=43.83 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999998874
No 417
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.70 E-value=0.15 Score=43.84 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..-|.|+|.+|+|||||...+....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 5678899999999999999998753
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.69 E-value=0.17 Score=43.75 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
...|.|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998753
No 419
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.67 E-value=0.13 Score=48.71 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+++.++.=. .-.+++|+|..|+|||||.+.+...
T Consensus 61 ald~ll~i~-~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 61 AIDGLLTCG-IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEeeeeec-CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444453311 3468999999999999999999984
No 420
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.61 E-value=0.24 Score=48.14 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=28.1
Q ss_pred hhhhhHHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 109 EFESGREELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
|.......++..+.. ..-.+++|+|..|+|||||.+.+..
T Consensus 150 g~~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp CCCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 544433334444443 2357999999999999999999876
No 421
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.56 E-value=0.2 Score=46.42 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHH
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTY 149 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 149 (422)
+++|.+.+. -.+++++|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 445555553 3588999999999999999998
No 422
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.55 E-value=0.16 Score=43.22 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|+|+|..|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998763
No 423
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.54 E-value=0.16 Score=43.06 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|..|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998753
No 424
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.54 E-value=0.11 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.53 E-value=0.16 Score=43.27 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998754
No 426
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.53 E-value=1.1 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-..|+|||..|.|||||++.+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 46899999999999999999975
No 427
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.50 E-value=1.1 Score=43.72 Aligned_cols=106 Identities=14% Similarity=0.043 Sum_probs=55.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCCCccCCCCHHHHHHHHH
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMPPSRVSVVIGEDYQLKKSILR 205 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 205 (422)
...++..|.|.+|.||||+.+..++. ...+-++ .. .+...++-+.+...... .............+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlT--pT---~~aa~~l~~kl~~~~~~-~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILV--PG---RQAAEMIRRRANASGII-VATKDNVRTVDSFLM 225 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEE--SC---HHHHHHHHHHHTTTSCC-CCCTTTEEEHHHHHH
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEe--CC---HHHHHHHHHHhhhcCcc-ccccceEEEeHHhhc
Confidence 46889999999999999999988762 1112222 11 22334444444322110 000111222222333
Q ss_pred HhcCCc---eEEEEEeCCCCCChhHHHHHHhhcCCCCCCcEEEEee
Q 042081 206 DYLTNK---KYFIVLDDYCEESDDVLDDLEEVLPENQNGSRVLMTV 248 (422)
Q Consensus 206 ~~L~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 248 (422)
+....+ -=+||+|.+...+...+..+....+. .++|+.-
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~----~~vilvG 267 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLC----DIAYVYG 267 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTC----SEEEEEE
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCC----CEEEEec
Confidence 222211 34899999875566666666555432 5565543
No 428
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.50 E-value=0.15 Score=43.52 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.++.|+|..|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966654
No 429
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.50 E-value=0.26 Score=49.27 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCH-HHHHHHH
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNF-RMILDDI 179 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 179 (422)
++++.|..-. +-+-++|.|..|+|||+|++++.+.. +-+..+++-+++..+. .+++.++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665422 24578999999999999999998742 2346788888877653 4454443
No 430
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.49 E-value=0.15 Score=43.02 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
...-|.|+|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678899999999999999998754
No 431
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.48 E-value=0.16 Score=43.15 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446789999999999999999875
No 432
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.47 E-value=0.12 Score=48.02 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 042081 131 VAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~ 150 (422)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999875
No 433
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.42 E-value=0.2 Score=44.06 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
....|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678899999999999999999874
No 434
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.41 E-value=0.17 Score=43.01 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
....|.|+|..|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998753
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.37 E-value=0.17 Score=42.91 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 567889999999999999999864
No 436
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.34 E-value=0.15 Score=44.08 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...-|.|+|.+|+|||||...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999998764
No 437
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.34 E-value=0.15 Score=43.80 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=26.0
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCC
Q 042081 129 SVVAIL-DSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYN 171 (422)
Q Consensus 129 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 171 (422)
++|+|+ +.||+||||+|..+... ....=..++-+......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCC
Confidence 578887 67999999999888762 222111345555554433
No 438
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.33 E-value=0.15 Score=49.09 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999975
No 439
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.33 E-value=0.17 Score=46.96 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999864
No 440
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.31 E-value=0.15 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456889999999999999999874
No 441
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.30 E-value=0.17 Score=42.86 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 442
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.29 E-value=0.17 Score=43.38 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...-|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999999864
No 443
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.28 E-value=0.31 Score=48.85 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCC-CHHHHHHH
Q 042081 116 ELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAY-NFRMILDD 178 (422)
Q Consensus 116 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~ 178 (422)
++++.|..-. +-.-++|.|..|+|||+|++++.+.. +-+..+++-+++.. ...+++.+
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4566666532 24678999999999999999998842 23567777777663 33344433
No 444
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.27 E-value=0.16 Score=42.60 Aligned_cols=24 Identities=21% Similarity=0.074 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...-|.|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999998875
No 445
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.25 E-value=0.17 Score=50.09 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|.++|+.|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999876
No 446
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.25 E-value=0.16 Score=44.06 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 447
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.24 E-value=0.16 Score=43.66 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..--|.|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3557889999999999999998864
No 448
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.24 E-value=0.16 Score=43.45 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999865
No 449
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.20 E-value=0.15 Score=43.57 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998764
No 450
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.18 E-value=0.34 Score=47.48 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHHhcC---------CCCceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 109 EFESGREELFDLLIEG---------QPQLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 109 Gr~~~~~~l~~~L~~~---------~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
|.++..+.|.+.+... ......|+|+|.+|+|||||...+....
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 8888888888887632 1235689999999999999999998753
No 451
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.14 E-value=0.17 Score=43.48 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
..-|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999998753
No 452
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.12 E-value=0.18 Score=50.38 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.+.|+.|+||||+|+.+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 453
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.10 E-value=0.18 Score=44.33 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 042081 130 VVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 130 vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999998764
No 454
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.01 E-value=0.2 Score=46.63 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 126 PQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 126 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999999875
No 455
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.00 E-value=0.17 Score=43.99 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 456
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.98 E-value=0.23 Score=44.09 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35678999999999999999998753
No 457
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.98 E-value=0.18 Score=43.49 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..-|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 458
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.94 E-value=0.23 Score=42.72 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999999865
No 459
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.92 E-value=0.18 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999874
No 460
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.89 E-value=0.49 Score=46.70 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHH-HHHHcCCCccCCcce-eEEEEeCCCCC-HHHHHHHHHHHhCCCCCC----
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFA-ADTYNNNHVKFYFDC-HAWVRVSIAYN-FRMILDDIIKSVMPPSRV---- 189 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~~~~---- 189 (422)
.++.|..-. .-+-++|.|..|+|||+|| ..+.+. .+-+. ++++-+++... +.++..++...=......
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 455555422 2346789999999999996 566663 22333 56788887643 456666654421111100
Q ss_pred --CccCC------CCHHHHHHHHHHhcCCceEEEEEeCCC
Q 042081 190 --SVVIG------EDYQLKKSILRDYLTNKKYFIVLDDYC 221 (422)
Q Consensus 190 --~~~~~------~~~~~~~~~l~~~L~~kr~LlVLDdv~ 221 (422)
..|.. ..--.+.+.++. +++.+||++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 00000 011122333333 5899999999984
No 461
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.89 E-value=0.19 Score=43.19 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..--|.|+|.+|+|||||...+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567889999999999999999865
No 462
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.88 E-value=0.24 Score=42.05 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456889999999999999999874
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.87 E-value=0.23 Score=43.91 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|.|..|+||||+++.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 464
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.84 E-value=0.12 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.++.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 47899999999999999999987
No 465
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.81 E-value=0.17 Score=42.58 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|..|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 466
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.79 E-value=0.15 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|..|+|||||...+..+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999764
No 467
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.79 E-value=0.099 Score=49.71 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=68.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCcc-C--Cc-----------------ceeEEEEeCC----CCCH-----------
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHVK-F--YF-----------------DCHAWVRVSI----AYNF----------- 172 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~--~F-----------------~~~~wv~vs~----~~~~----------- 172 (422)
-.+++|+|..|+|||||.+.++--..-. + .| ..+.+|.-.. ..++
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999997521100 0 00 1122331110 0011
Q ss_pred -------HHHHHHHHHHhCCCCC-CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCC
Q 042081 173 -------RMILDDIIKSVMPPSR-VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQN 240 (422)
Q Consensus 173 -------~~~~~~il~~l~~~~~-~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~ 240 (422)
.+-..++++.++.... ...+.. ..-+...-.|...|..++-+|+||.--.. +...-..+...+.. ...
T Consensus 111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 190 (353)
T 1oxx_K 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190 (353)
T ss_dssp SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1234456666655321 112222 33334445677777788889999964211 22222222222221 112
Q ss_pred CcEEEEeecChhHhhhcc
Q 042081 241 GSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 241 gs~ilvTTR~~~va~~~~ 258 (422)
|..||++|.+...+..++
T Consensus 191 g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 191 GVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp CCEEEEEESCHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHhC
Confidence 667899999977665443
No 468
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.77 E-value=0.19 Score=42.69 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999875
No 469
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.73 E-value=0.19 Score=43.35 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999865
No 470
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.64 E-value=0.2 Score=43.01 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..-|.|+|.+|+|||||...+..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 471
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.62 E-value=0.15 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-.+++|+|..|+|||||++.++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 472
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.55 E-value=0.25 Score=42.98 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|.+|+|||||...+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998753
No 473
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.49 E-value=0.42 Score=44.96 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+++.+.|.||+||||+|..+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 367888899999999999988875
No 474
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.48 E-value=1.3 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.-..++|||..|+|||||++.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 356899999999999999999976
No 475
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.48 E-value=0.39 Score=42.13 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHc
Q 042081 128 LSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
-..|.+.|..|+||||+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 476
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.47 E-value=0.2 Score=47.55 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 042081 129 SVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.+++|+|..|+|||||...+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4899999999999999999987
No 477
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.45 E-value=0.21 Score=44.33 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDI 179 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 179 (422)
.-.++.|.|.+|+|||+||.+++.+. ..+.-..+++++... +..++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 35689999999999999998876421 111122355555443 455555444
No 478
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.39 E-value=0.83 Score=40.48 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=49.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHHHHHHHHHHHhCC---C-C-----CC-CccC--CCCHH
Q 042081 131 VAILDSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFRMILDDIIKSVMP---P-S-----RV-SVVI--GEDYQ 198 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~---~-~-----~~-~~~~--~~~~~ 198 (422)
+.|+|..|.|||.+|..+.... . ..++++. . ...+..++.+.+.. . . .. .... ..+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~--~---~~~liv~-P----~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL--S---TPTLIVV-P----TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS--C---SCEEEEE-S----SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc--C---CCEEEEe-C----CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6788999999999998887632 1 1234443 1 11233333333221 1 0 00 0000 02334
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCCChhHHHHHHhhcC
Q 042081 199 LKKSILRDYLTNKKYFIVLDDYCEESDDVLDDLEEVLP 236 (422)
Q Consensus 199 ~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~ 236 (422)
.+..... .+.++--+||+|.+..-....+..+...++
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 4443333 334455699999987544556677766654
No 479
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.38 E-value=0.35 Score=46.59 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=21.4
Q ss_pred CCCceEEEEE-cCCCCCHHHHHHHHHc
Q 042081 125 QPQLSVVAIL-DSSGFDKTAFAADTYN 150 (422)
Q Consensus 125 ~~~~~vv~I~-G~gGiGKTtLA~~v~~ 150 (422)
....++|+|+ |-||+||||+|..+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 3457888887 7899999999988876
No 480
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.37 E-value=0.24 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 481
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.36 E-value=0.29 Score=42.40 Aligned_cols=24 Identities=8% Similarity=-0.083 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|+|+|+.|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999998765
No 482
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.34 E-value=0.18 Score=49.07 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999763
No 483
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.25 E-value=0.27 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCceEEEEEc-CCCCCHHHHHHHHHc
Q 042081 126 PQLSVVAILD-SSGFDKTAFAADTYN 150 (422)
Q Consensus 126 ~~~~vv~I~G-~gGiGKTtLA~~v~~ 150 (422)
.+.++|+|+| -||+||||+|..+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 4578999985 899999999988775
No 484
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.24 E-value=0.29 Score=45.31 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 114 REELFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 114 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
++++...+. -.+++|+|..|+|||||.+.+..
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcc
Confidence 445555553 34889999999999999999986
No 485
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.23 E-value=0.38 Score=45.59 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
..+++.+.|.||+||||+|..+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 468899999999999999988765
No 486
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.21 E-value=0.34 Score=44.14 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 487
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.20 E-value=0.13 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=10.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 488
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.16 E-value=0.35 Score=45.79 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=20.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHc
Q 042081 125 QPQLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 125 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
.....++.+.|.||+||||+|..+..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHH
Confidence 33456667779999999999987764
No 489
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.10 E-value=0.3 Score=41.22 Aligned_cols=25 Identities=16% Similarity=-0.011 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
..--|.|+|.+|+|||||...+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999998654
No 490
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.07 E-value=0.16 Score=43.06 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
.--|.|+|..|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987653
No 491
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.01 E-value=0.25 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHH
Q 042081 127 QLSVVAILDSSGFDKTAFAADT 148 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v 148 (422)
+..-|.|.|.||+||||+++++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4667889999999999999886
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.98 E-value=0.22 Score=50.25 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHcCCCc-cCC--cc-eeEEEEeCC----CCCHHHHHHH--------------HHHHhCC
Q 042081 128 LSVVAILDSSGFDKTAFAADTYNNNHV-KFY--FD-CHAWVRVSI----AYNFRMILDD--------------IIKSVMP 185 (422)
Q Consensus 128 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~vs~----~~~~~~~~~~--------------il~~l~~ 185 (422)
-.+++|+|..|+|||||++.++.-..- .+. +. .+.++.-.. ..++.+++.. ++..++.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999863211 111 11 133432211 1233333222 1112221
Q ss_pred CCC-CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCCC--CCCcEEEEeecChhHhhhcc
Q 042081 186 PSR-VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPEN--QNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 186 ~~~-~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTTR~~~va~~~~ 258 (422)
... ...+.. ..-+...-.|...|..++-+|+||.=-.. +...-..+...+..- ..|..||++|.+...+..++
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 469 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 110 011111 33344455677778888889999964321 333333333333211 22566888888877666543
No 493
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.94 E-value=0.25 Score=50.20 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|.|+.|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 494
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.91 E-value=0.22 Score=48.86 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 117 LFDLLIEGQPQLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 117 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
+++.++.= ..-.+++|+|..|+|||||.+.+..-
T Consensus 147 vld~vl~i-~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 147 AINALLTV-GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHHSCC-BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEeeeEEe-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44445332 23568999999999999999999884
No 495
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.90 E-value=0.2 Score=50.46 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcc-CC--cce--eEEEEeC--C--CCCHHHHHH---------------HHHHHhC
Q 042081 129 SVVAILDSSGFDKTAFAADTYNNNHVK-FY--FDC--HAWVRVS--I--AYNFRMILD---------------DIIKSVM 184 (422)
Q Consensus 129 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~~--~~wv~vs--~--~~~~~~~~~---------------~il~~l~ 184 (422)
.+++|+|..|+|||||++.++.-..-. +. ++. +.++.-. . ..++.+.+. ++++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 489999999999999999998632111 10 111 2222111 0 112222221 1112221
Q ss_pred CCCC-CCccCC-CCHHHHHHHHHHhcCCceEEEEEeCCCCC-ChhHHHHHHhhcCC--CCCCcEEEEeecChhHhhhcc
Q 042081 185 PPSR-VSVVIG-EDYQLKKSILRDYLTNKKYFIVLDDYCEE-SDDVLDDLEEVLPE--NQNGSRVLMTVTDPDFLSSFD 258 (422)
Q Consensus 185 ~~~~-~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~va~~~~ 258 (422)
.... ...+.. ..-+...-.|...|..++-+|+||.=-.. +...-..+...+.. ...|..||++|.+...+..++
T Consensus 375 l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 375 LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp GGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred CHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 1110 011111 23334445566777777889999964311 33322233322221 123667888888877766543
No 496
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.81 E-value=0.31 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 042081 131 VAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 131 v~I~G~gGiGKTtLA~~v~~~ 151 (422)
|+|.|.||+||||+|..+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~ 23 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKI 23 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 667899999999999988763
No 497
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=88.80 E-value=0.25 Score=43.01 Aligned_cols=41 Identities=10% Similarity=-0.009 Sum_probs=26.3
Q ss_pred EEEEE-cCCCCCHHHHHHHHHcCCCccCCcceeEEEEeCCCCCHH
Q 042081 130 VVAIL-DSSGFDKTAFAADTYNNNHVKFYFDCHAWVRVSIAYNFR 173 (422)
Q Consensus 130 vv~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 173 (422)
+|+|+ +.||+||||+|..+..- ....= .++-+......+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCCCCCHH
Confidence 56665 78999999999988763 22221 45556665554433
No 498
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.80 E-value=0.25 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHc
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYN 150 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~ 150 (422)
...+|.|.|+.|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999877
No 499
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.72 E-value=0.32 Score=43.69 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcCC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNNN 152 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 152 (422)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999998653
No 500
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.71 E-value=0.29 Score=45.30 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHcC
Q 042081 127 QLSVVAILDSSGFDKTAFAADTYNN 151 (422)
Q Consensus 127 ~~~vv~I~G~gGiGKTtLA~~v~~~ 151 (422)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999875
Done!