Query 042083
Match_columns 494
No_of_seqs 375 out of 1888
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 3E-16 1E-20 130.8 5.5 77 98-175 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.5E-16 8.7E-21 126.0 3.1 70 106-176 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.4 4.6E-14 1.6E-18 105.9 4.5 51 124-174 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.4 8.8E-14 3E-18 110.5 6.2 54 123-177 13-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.4 2.2E-13 7.4E-18 106.9 6.3 54 123-177 12-65 (69)
6 2ect_A Ring finger protein 126 99.4 1.7E-13 5.8E-18 109.9 5.5 56 123-179 13-68 (78)
7 2ecl_A Ring-box protein 2; RNF 99.3 3.2E-13 1.1E-17 110.5 2.5 52 124-175 14-76 (81)
8 1v87_A Deltex protein 2; ring- 99.3 1.6E-12 5.4E-17 111.3 6.1 52 124-176 24-95 (114)
9 2ecm_A Ring finger and CHY zin 99.3 1.4E-12 4.8E-17 97.5 5.1 50 124-174 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.3 2.8E-12 9.7E-17 99.5 4.4 52 123-175 13-68 (69)
11 3dpl_R Ring-box protein 1; ubi 99.3 3E-12 1E-16 110.8 4.9 50 124-174 36-100 (106)
12 3ng2_A RNF4, snurf, ring finge 99.3 2.5E-12 8.6E-17 100.8 3.7 54 123-177 8-65 (71)
13 2xeu_A Ring finger protein 4; 99.2 3.3E-12 1.1E-16 97.8 3.1 52 124-176 2-57 (64)
14 2djb_A Polycomb group ring fin 99.2 1.7E-11 5.9E-16 97.2 6.0 54 123-179 13-66 (72)
15 2d8s_A Cellular modulator of i 99.2 1.4E-11 4.8E-16 101.5 5.2 51 124-176 14-71 (80)
16 2ecn_A Ring finger protein 141 99.2 8.1E-12 2.8E-16 98.1 2.7 50 123-177 13-62 (70)
17 1chc_A Equine herpes virus-1 r 99.1 2.4E-11 8.4E-16 94.7 4.6 49 124-175 4-52 (68)
18 2ct2_A Tripartite motif protei 99.1 4.3E-11 1.5E-15 97.2 5.8 53 123-176 13-69 (88)
19 4a0k_B E3 ubiquitin-protein li 99.1 6.6E-12 2.3E-16 110.7 0.3 50 124-174 47-111 (117)
20 2d8t_A Dactylidin, ring finger 99.1 2.2E-11 7.4E-16 96.4 2.8 49 124-176 14-62 (71)
21 2csy_A Zinc finger protein 183 99.1 1.2E-10 4E-15 94.2 4.9 48 123-174 13-60 (81)
22 2ysl_A Tripartite motif-contai 99.0 1.7E-10 5.7E-15 90.9 5.2 50 123-176 18-70 (73)
23 4ayc_A E3 ubiquitin-protein li 99.0 8.9E-11 3E-15 104.5 3.6 48 124-175 52-99 (138)
24 2ct0_A Non-SMC element 1 homol 99.0 2.1E-10 7.1E-15 93.7 5.4 51 124-177 14-66 (74)
25 2yur_A Retinoblastoma-binding 99.0 1.9E-10 6.4E-15 91.9 5.1 51 123-176 13-65 (74)
26 2ecy_A TNF receptor-associated 99.0 2E-10 6.8E-15 89.4 5.0 50 123-176 13-63 (66)
27 2ecv_A Tripartite motif-contai 99.0 4.1E-10 1.4E-14 90.3 5.8 51 123-177 17-73 (85)
28 2ecw_A Tripartite motif-contai 99.0 3.6E-10 1.2E-14 90.7 5.2 50 123-176 17-72 (85)
29 4ap4_A E3 ubiquitin ligase RNF 99.0 1.6E-10 5.3E-15 99.8 3.2 53 124-177 6-62 (133)
30 1t1h_A Gspef-atpub14, armadill 99.0 3.3E-10 1.1E-14 90.6 4.7 50 123-176 6-56 (78)
31 3lrq_A E3 ubiquitin-protein li 98.9 3.8E-10 1.3E-14 95.3 4.2 50 124-176 21-71 (100)
32 4ap4_A E3 ubiquitin ligase RNF 98.9 4.1E-10 1.4E-14 97.1 4.0 53 123-176 70-126 (133)
33 2y43_A E3 ubiquitin-protein li 98.9 5.1E-10 1.7E-14 93.7 4.2 50 124-176 21-70 (99)
34 2egp_A Tripartite motif-contai 98.9 1.8E-10 6.2E-15 91.9 1.1 50 123-176 10-66 (79)
35 1g25_A CDK-activating kinase a 98.9 7.8E-10 2.7E-14 85.8 4.6 52 125-177 3-57 (65)
36 2ysj_A Tripartite motif-contai 98.9 9.9E-10 3.4E-14 84.5 5.1 43 123-169 18-63 (63)
37 2ckl_A Polycomb group ring fin 98.9 6.2E-10 2.1E-14 94.7 4.0 50 124-176 14-63 (108)
38 3fl2_A E3 ubiquitin-protein li 98.9 1.4E-09 4.9E-14 94.6 5.5 48 124-175 51-99 (124)
39 1jm7_A BRCA1, breast cancer ty 98.9 1.8E-09 6.1E-14 91.5 5.1 50 125-178 21-73 (112)
40 2ckl_B Ubiquitin ligase protei 98.9 1.2E-09 4.1E-14 99.5 4.3 49 124-175 53-102 (165)
41 2ecj_A Tripartite motif-contai 98.9 1.4E-09 4.9E-14 81.7 3.9 43 123-169 13-58 (58)
42 3ztg_A E3 ubiquitin-protein li 98.8 2.1E-09 7E-14 88.6 4.3 49 123-174 11-61 (92)
43 1z6u_A NP95-like ring finger p 98.8 5.5E-09 1.9E-13 94.9 5.2 49 124-176 77-126 (150)
44 3hct_A TNF receptor-associated 98.8 3.2E-09 1.1E-13 91.9 3.5 50 123-176 16-66 (118)
45 1rmd_A RAG1; V(D)J recombinati 98.7 7.8E-09 2.7E-13 88.8 4.1 50 124-177 22-72 (116)
46 3l11_A E3 ubiquitin-protein li 98.7 2.7E-09 9.4E-14 91.5 0.8 48 124-175 14-62 (115)
47 2kr4_A Ubiquitin conjugation f 98.7 8.1E-09 2.8E-13 85.3 3.5 50 123-176 12-61 (85)
48 2kre_A Ubiquitin conjugation f 98.7 9.7E-09 3.3E-13 87.6 3.6 51 123-177 27-77 (100)
49 1wgm_A Ubiquitin conjugation f 98.6 1.3E-08 4.6E-13 86.4 4.0 51 123-177 20-71 (98)
50 2y1n_A E3 ubiquitin-protein li 98.6 1.6E-08 5.6E-13 105.2 4.7 48 125-176 332-380 (389)
51 1e4u_A Transcriptional repress 98.6 3.9E-08 1.3E-12 80.4 5.8 54 123-177 9-64 (78)
52 2vje_A E3 ubiquitin-protein li 98.6 1.7E-08 5.9E-13 79.1 3.4 47 124-174 7-56 (64)
53 1jm7_B BARD1, BRCA1-associated 98.6 1.8E-08 6.1E-13 87.1 2.6 47 124-176 21-68 (117)
54 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.1E-08 7.3E-13 102.9 2.3 53 124-176 307-374 (381)
55 3knv_A TNF receptor-associated 98.5 2.3E-08 7.9E-13 90.0 2.0 50 123-176 29-79 (141)
56 1bor_A Transcription factor PM 98.5 3.8E-08 1.3E-12 74.8 2.5 47 123-176 4-50 (56)
57 2c2l_A CHIP, carboxy terminus 98.5 4.8E-08 1.7E-12 93.9 3.4 49 124-176 207-256 (281)
58 2vje_B MDM4 protein; proto-onc 98.5 6.3E-08 2.2E-12 75.6 3.2 49 124-174 6-55 (63)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.4E-07 4.8E-12 73.7 4.2 47 124-174 5-58 (60)
60 4ic3_A E3 ubiquitin-protein li 98.4 6.4E-08 2.2E-12 77.6 2.2 44 124-175 23-67 (74)
61 2yu4_A E3 SUMO-protein ligase 98.4 1.3E-07 4.4E-12 79.2 3.8 50 123-175 5-63 (94)
62 3hcs_A TNF receptor-associated 98.4 1.3E-07 4.4E-12 86.4 3.8 50 123-176 16-66 (170)
63 1wim_A KIAA0161 protein; ring 98.3 2.6E-07 8.8E-12 76.8 3.3 48 124-172 4-61 (94)
64 2f42_A STIP1 homology and U-bo 98.2 3.2E-07 1.1E-11 86.3 2.8 50 123-176 104-154 (179)
65 2ecg_A Baculoviral IAP repeat- 98.2 5.3E-07 1.8E-11 72.1 3.4 44 125-176 25-69 (75)
66 2ea5_A Cell growth regulator w 98.2 1.3E-06 4.4E-11 69.4 4.0 45 124-176 14-59 (68)
67 2bay_A PRE-mRNA splicing facto 98.1 1.2E-06 4.2E-11 68.4 2.7 51 125-178 3-53 (61)
68 2yho_A E3 ubiquitin-protein li 98.1 1.2E-06 4.2E-11 71.3 2.2 44 125-176 18-62 (79)
69 3t6p_A Baculoviral IAP repeat- 97.9 1.8E-06 6.2E-11 88.5 1.5 44 124-175 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 97.9 3.3E-06 1.1E-10 83.9 3.0 52 123-177 179-234 (267)
71 3nw0_A Non-structural maintena 97.6 5E-05 1.7E-09 74.1 4.6 51 124-177 179-231 (238)
72 3vk6_A E3 ubiquitin-protein li 97.5 4.7E-05 1.6E-09 65.5 3.6 46 127-175 3-49 (101)
73 2ko5_A Ring finger protein Z; 91.9 0.1 3.5E-06 44.5 3.3 50 123-177 26-75 (99)
74 2lri_C Autoimmune regulator; Z 90.5 0.16 5.5E-06 40.1 2.9 45 124-172 11-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 90.4 0.17 5.8E-06 41.8 3.2 34 125-159 3-36 (101)
76 1wil_A KIAA1045 protein; ring 84.4 0.73 2.5E-05 38.6 3.5 34 124-159 14-47 (89)
77 1we9_A PHD finger family prote 83.1 0.26 9E-06 37.9 0.3 48 124-171 5-57 (64)
78 3lqh_A Histone-lysine N-methyl 81.1 0.59 2E-05 43.8 1.9 48 126-173 3-64 (183)
79 2l5u_A Chromodomain-helicase-D 80.3 0.82 2.8E-05 35.2 2.2 45 123-171 9-57 (61)
80 3o36_A Transcription intermedi 79.6 0.42 1.4E-05 44.0 0.4 46 124-173 3-52 (184)
81 1f62_A Transcription factor WS 77.4 1 3.4E-05 33.1 1.8 44 127-171 2-49 (51)
82 3u5n_A E3 ubiquitin-protein li 76.5 0.56 1.9E-05 44.1 0.3 46 124-173 6-55 (207)
83 1mm2_A MI2-beta; PHD, zinc fin 73.4 0.86 2.9E-05 35.1 0.5 45 124-172 8-56 (61)
84 1wep_A PHF8; structural genomi 70.8 4.4 0.00015 32.4 4.3 49 124-173 11-64 (79)
85 2ysm_A Myeloid/lymphoid or mix 69.9 1.2 4.3E-05 37.6 0.8 46 124-170 6-55 (111)
86 3m62_A Ubiquitin conjugation f 68.3 2.5 8.4E-05 48.7 3.0 50 124-177 890-940 (968)
87 2k16_A Transcription initiatio 67.5 1.6 5.5E-05 34.5 0.9 49 124-173 17-69 (75)
88 3v43_A Histone acetyltransfera 67.1 1.5 5.1E-05 37.5 0.7 45 127-171 63-111 (112)
89 2ri7_A Nucleosome-remodeling f 67.1 1.3 4.3E-05 40.2 0.3 48 124-172 7-59 (174)
90 2kgg_A Histone demethylase jar 66.8 2.1 7.1E-05 31.8 1.4 44 127-170 4-52 (52)
91 2vpb_A Hpygo1, pygopus homolog 65.8 4.2 0.00015 31.8 3.1 34 124-157 7-41 (65)
92 2yql_A PHD finger protein 21A; 65.2 0.8 2.7E-05 34.5 -1.2 45 123-171 7-55 (56)
93 1wev_A Riken cDNA 1110020M19; 62.9 1.3 4.5E-05 36.6 -0.4 52 125-176 16-76 (88)
94 2lv9_A Histone-lysine N-methyl 61.5 2.2 7.6E-05 35.8 0.7 45 125-171 28-75 (98)
95 2ro1_A Transcription intermedi 61.4 2 6.9E-05 40.0 0.5 44 125-172 2-49 (189)
96 1xwh_A Autoimmune regulator; P 60.3 1.2 4.2E-05 34.7 -1.0 45 123-171 6-54 (66)
97 2yt5_A Metal-response element- 58.3 4.3 0.00015 31.1 1.8 49 124-172 5-61 (66)
98 2puy_A PHD finger protein 21A; 58.3 1.5 5E-05 33.5 -0.9 45 124-172 4-52 (60)
99 1fp0_A KAP-1 corepressor; PHD 58.0 4.3 0.00015 33.9 1.9 46 123-172 23-72 (88)
100 1wem_A Death associated transc 57.8 3.1 0.00011 33.0 1.0 46 125-172 16-70 (76)
101 2e6r_A Jumonji/ARID domain-con 57.6 0.89 3E-05 37.9 -2.4 48 124-172 15-66 (92)
102 2lbm_A Transcriptional regulat 56.9 10 0.00035 34.2 4.3 45 123-171 61-116 (142)
103 2xb1_A Pygopus homolog 2, B-ce 55.9 5.2 0.00018 34.0 2.1 48 126-173 4-62 (105)
104 3v43_A Histone acetyltransfera 54.3 13 0.00044 31.6 4.4 46 125-170 5-62 (112)
105 3shb_A E3 ubiquitin-protein li 51.3 2.1 7E-05 34.8 -1.1 44 127-171 28-76 (77)
106 2klu_A T-cell surface glycopro 50.4 28 0.00095 27.9 5.3 12 73-84 35-46 (70)
107 1weu_A Inhibitor of growth fam 50.0 7.3 0.00025 32.6 2.0 44 124-172 35-85 (91)
108 3asl_A E3 ubiquitin-protein li 47.9 3.8 0.00013 32.4 -0.0 44 127-171 20-68 (70)
109 1wew_A DNA-binding family prot 47.3 4.4 0.00015 32.5 0.3 48 124-172 15-72 (78)
110 2e6s_A E3 ubiquitin-protein li 46.3 4 0.00014 33.0 -0.1 44 127-171 28-76 (77)
111 2ku3_A Bromodomain-containing 46.2 18 0.00063 28.6 3.7 48 124-171 15-65 (71)
112 3ql9_A Transcriptional regulat 46.0 21 0.0007 31.7 4.4 45 123-171 55-110 (129)
113 3ask_A E3 ubiquitin-protein li 43.7 4.9 0.00017 39.0 -0.0 44 127-171 176-224 (226)
114 1wen_A Inhibitor of growth fam 43.0 12 0.00041 29.7 2.2 44 124-172 15-65 (71)
115 3o70_A PHD finger protein 13; 42.7 4.2 0.00014 32.0 -0.6 46 124-171 18-66 (68)
116 2l43_A N-teminal domain from h 41.8 15 0.0005 30.2 2.6 53 124-176 24-79 (88)
117 2kwj_A Zinc finger protein DPF 41.7 18 0.00061 30.8 3.2 45 126-170 2-59 (114)
118 1weo_A Cellulose synthase, cat 40.2 45 0.0015 28.1 5.3 51 125-175 16-70 (93)
119 4gne_A Histone-lysine N-methyl 39.9 16 0.00055 31.3 2.6 48 123-176 13-66 (107)
120 3mpx_A FYVE, rhogef and PH dom 37.3 7.1 0.00024 39.7 0.0 50 124-173 374-430 (434)
121 1joc_A EEA1, early endosomal a 34.9 21 0.00072 31.1 2.7 34 125-158 69-102 (125)
122 2ysm_A Myeloid/lymphoid or mix 34.8 5.4 0.00018 33.6 -1.1 44 127-171 56-103 (111)
123 1dvp_A HRS, hepatocyte growth 34.7 18 0.00061 34.0 2.4 35 124-158 160-194 (220)
124 3i2d_A E3 SUMO-protein ligase 34.7 31 0.001 35.7 4.2 49 126-177 250-302 (371)
125 3t7l_A Zinc finger FYVE domain 34.6 22 0.00076 29.1 2.6 35 125-159 20-54 (90)
126 1y02_A CARP2, FYVE-ring finger 34.3 5.6 0.00019 34.9 -1.1 48 125-172 19-66 (120)
127 1z60_A TFIIH basal transcripti 34.2 15 0.00051 28.5 1.4 43 126-169 16-58 (59)
128 3zyq_A Hepatocyte growth facto 33.7 19 0.00065 34.2 2.4 35 124-158 163-197 (226)
129 1zbd_B Rabphilin-3A; G protein 33.3 20 0.00068 31.8 2.3 34 124-157 54-88 (134)
130 4fo9_A E3 SUMO-protein ligase 32.9 27 0.00091 36.0 3.4 48 126-176 216-267 (360)
131 1z2q_A LM5-1; membrane protein 32.1 29 0.001 28.0 2.9 35 124-158 20-54 (84)
132 1vfy_A Phosphatidylinositol-3- 31.4 30 0.001 27.1 2.8 32 126-157 12-43 (73)
133 3f6q_B LIM and senescent cell 31.1 22 0.00076 26.4 1.9 42 125-176 11-52 (72)
134 1wfk_A Zinc finger, FYVE domai 31.1 31 0.0011 28.3 2.9 35 124-158 8-42 (88)
135 2cs3_A Protein C14ORF4, MY039 30.2 69 0.0024 26.7 4.8 39 124-162 14-52 (93)
136 2yw8_A RUN and FYVE domain-con 30.1 30 0.001 27.8 2.6 35 124-158 18-52 (82)
137 1x4u_A Zinc finger, FYVE domai 28.1 36 0.0012 27.4 2.8 33 124-156 13-45 (84)
138 1wee_A PHD finger family prote 28.1 21 0.00073 27.8 1.4 48 124-172 15-66 (72)
139 1x61_A Thyroid receptor intera 27.8 53 0.0018 24.6 3.6 40 125-174 5-44 (72)
140 1x4k_A Skeletal muscle LIM-pro 26.8 45 0.0015 24.9 3.0 40 126-175 6-45 (72)
141 1wyh_A SLIM 2, skeletal muscle 26.4 60 0.002 24.2 3.7 41 125-175 5-45 (72)
142 1g47_A Pinch protein; LIM doma 26.3 55 0.0019 24.8 3.5 43 124-176 10-52 (77)
143 3c6w_A P28ING5, inhibitor of g 25.0 14 0.00048 28.2 -0.2 43 124-171 8-57 (59)
144 3kv5_D JMJC domain-containing 24.9 13 0.00045 39.6 -0.5 47 125-172 37-88 (488)
145 1x63_A Skeletal muscle LIM-pro 24.9 56 0.0019 25.1 3.3 41 126-176 16-56 (82)
146 2l3k_A Rhombotin-2, linker, LI 24.7 41 0.0014 28.4 2.7 38 127-174 10-47 (123)
147 1x4l_A Skeletal muscle LIM-pro 24.5 49 0.0017 24.9 2.8 41 125-175 5-47 (72)
148 2jmo_A Parkin; IBR, E3 ligase, 23.9 9.6 0.00033 30.6 -1.4 19 146-166 55-73 (80)
149 2dj7_A Actin-binding LIM prote 23.8 49 0.0017 25.9 2.8 40 124-174 14-53 (80)
150 1iml_A CRIP, cysteine rich int 23.7 33 0.0011 26.2 1.7 38 127-175 2-39 (76)
151 2vnf_A ING 4, P29ING4, inhibit 23.6 12 0.0004 28.6 -0.9 43 124-171 9-58 (60)
152 2cu8_A Cysteine-rich protein 2 23.5 38 0.0013 25.8 2.1 40 125-175 9-48 (76)
153 3mjh_B Early endosome antigen 21.9 18 0.00061 25.2 -0.2 15 124-138 4-18 (34)
154 3o7a_A PHD finger protein 13 v 21.4 14 0.00046 27.3 -0.9 41 130-171 8-51 (52)
155 2co8_A NEDD9 interacting prote 21.4 70 0.0024 25.0 3.3 42 124-176 14-55 (82)
156 2ks1_B Epidermal growth factor 20.5 77 0.0026 23.1 3.0 32 50-81 13-44 (44)
157 1x68_A FHL5 protein; four-and- 20.2 67 0.0023 24.5 2.9 39 126-174 6-46 (76)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.61 E-value=3e-16 Score=130.82 Aligned_cols=77 Identities=31% Similarity=0.713 Sum_probs=67.9
Q ss_pred ccCCCCCHHHHhcCCceeeeeecC-CCCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 98 LHDAGVDQSFIDTLPVFYYKAIIG-LKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 98 l~~~Gl~~~~I~~LP~~~y~~~~~-~~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
....|++++.|+.||.+.+..... ......|+||+++|..++.++.+| |+|.||..||..||+.+.+||+||..+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456889999999999999876543 345678999999999999999999 99999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-16 Score=125.97 Aligned_cols=70 Identities=39% Similarity=0.916 Sum_probs=61.9
Q ss_pred HHHhcCCceeeeeecCCCCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 106 SFIDTLPVFYYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 106 ~~I~~LP~~~y~~~~~~~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
+.|+.||.++|+......+...|+||+++|..++.++.+| |+|.||..||..||+.+.+||+||+.+.+.
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4577899999987665567789999999999999999998 999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=4.6e-14 Score=105.86 Aligned_cols=51 Identities=55% Similarity=1.247 Sum_probs=46.8
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
+..+|+||+++|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 566899999999998888888779999999999999999999999999774
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.8e-14 Score=110.51 Aligned_cols=54 Identities=43% Similarity=0.909 Sum_probs=48.9
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
.....|+||++.|...+.+.+++ |+|.||..||.+|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 45678999999999988898998 9999999999999999999999999987653
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=106.87 Aligned_cols=54 Identities=35% Similarity=0.979 Sum_probs=48.8
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
.....|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 35678999999999888899998 9999999999999999999999999987654
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=1.7e-13 Score=109.92 Aligned_cols=56 Identities=38% Similarity=0.908 Sum_probs=50.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSS 179 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 179 (494)
.....|+||++.|...+.+..++ |+|.||..||..|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 35678999999999888888898 999999999999999999999999998776543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.2e-13 Score=110.49 Aligned_cols=52 Identities=29% Similarity=0.749 Sum_probs=42.5
Q ss_pred CCCCCcccccccCC-----------CCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEP-----------EDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~-----------~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
++..|+||+++|.. ++.++.++.|+|.||..||.+||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 35578888888753 45566666799999999999999999999999998754
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=1.6e-12 Score=111.34 Aligned_cols=52 Identities=29% Similarity=0.605 Sum_probs=42.0
Q ss_pred CCCCCcccccccCCCC---------------ceeecCCCCCcccHHHHHHHHh-----cCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPED---------------KLRLLPKCSHAFHMECIDTWLL-----SHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d---------------~vr~LP~C~H~FH~~CI~~WL~-----~~~tCPlCR~~l~~~ 176 (494)
.+.+|+|||++|.... .+++++ |+|.||..||..||. .+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999996643 333676 999999999999994 577999999987654
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=1.4e-12 Score=97.54 Aligned_cols=50 Identities=28% Similarity=0.705 Sum_probs=43.3
Q ss_pred CCCCCcccccccCCCC-ceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPED-KLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~d-~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
....|+||++.|..++ .+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999999996544 566777 9999999999999999999999999764
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=99.54 Aligned_cols=52 Identities=23% Similarity=0.613 Sum_probs=43.9
Q ss_pred CCCCCCcccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 123 KNPFDCAVCLCEFEPE----DKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 123 ~~~~~CaICLeef~~~----d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
.+...|+||++.|... ..+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999998753 3446777 99999999999999999999999998753
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.26 E-value=3e-12 Score=110.79 Aligned_cols=50 Identities=30% Similarity=0.611 Sum_probs=42.5
Q ss_pred CCCCCcccccccCCCC---------------ceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPED---------------KLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~d---------------~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
++..|+||++.|...- .++.++ |+|.||..||..||+.+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999997541 355676 9999999999999999999999999753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.25 E-value=2.5e-12 Score=100.75 Aligned_cols=54 Identities=22% Similarity=0.585 Sum_probs=45.6
Q ss_pred CCCCCCcccccccCC----CCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEP----EDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~----~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
.+...|+||++.|.. ++.+..++ |+|.||..||.+|++.+.+||+||..+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 356789999999865 24556777 9999999999999999999999999987654
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.23 E-value=3.3e-12 Score=97.79 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=44.3
Q ss_pred CCCCCcccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPE----DKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~----d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
+...|+||++.|... +.+..++ |+|.||..||..|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999998753 4456777 999999999999999999999999988764
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=97.18 Aligned_cols=54 Identities=19% Similarity=0.410 Sum_probs=45.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSS 179 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 179 (494)
.+...|+||++.|.+ .+.+++ |+|.||..||..|+..+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 456789999999875 344446 999999999999999999999999998776544
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=101.54 Aligned_cols=51 Identities=31% Similarity=0.838 Sum_probs=43.9
Q ss_pred CCCCCcccccccCCCCceeecCCCC-----CcccHHHHHHHHhcC--CCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCS-----HAFHMECIDTWLLSH--STCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~-----H~FH~~CI~~WL~~~--~tCPlCR~~l~~~ 176 (494)
+...|.||+++|..++.+ ++| |+ |.||..||++||..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 566899999999877766 588 96 999999999999875 4899999988765
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=8.1e-12 Score=98.09 Aligned_cols=50 Identities=32% Similarity=0.853 Sum_probs=43.9
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
.+...|+||++.+.. ..++ |+|.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456789999999875 6677 9999999999999999999999999887653
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=2.4e-11 Score=94.66 Aligned_cols=49 Identities=35% Similarity=0.796 Sum_probs=42.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
....|+||++.+.. .+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45689999999863 356787 99999999999999999999999998754
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.3e-11 Score=97.20 Aligned_cols=53 Identities=26% Similarity=0.700 Sum_probs=45.3
Q ss_pred CCCCCCcccccccCCCCc-eeecCCCCCcccHHHHHHHHhcC---CCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDK-LRLLPKCSHAFHMECIDTWLLSH---STCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~-vr~LP~C~H~FH~~CI~~WL~~~---~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|...+. ...++ |+|.||..||..|+..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999987665 66777 99999999999999876 7899999987654
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.12 E-value=6.6e-12 Score=110.74 Aligned_cols=50 Identities=30% Similarity=0.650 Sum_probs=1.1
Q ss_pred CCCCCcccccccCCC-------------C--ceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPE-------------D--KLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~-------------d--~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
..+.|+||+++|... + .+..++ |+|.||..||.+||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999999752 2 222345 9999999999999999999999999753
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-11 Score=96.37 Aligned_cols=49 Identities=31% Similarity=0.613 Sum_probs=42.6
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
+...|+||++.|.. ...++ |+|.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 56789999999864 45677 999999999999999999999999988654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=94.20 Aligned_cols=48 Identities=23% Similarity=0.541 Sum_probs=41.8
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
.....|+||++.|.. ..+++ |+|.||..||..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 356689999999964 44577 9999999999999999999999999885
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.7e-10 Score=90.92 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=41.7
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL---SHSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~---~~~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.. ...++ |+|.||..||..|++ .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 456799999999874 45567 999999999999997 466899999988654
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.03 E-value=8.9e-11 Score=104.52 Aligned_cols=48 Identities=31% Similarity=0.817 Sum_probs=41.8
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
++..|+||++.|.. ..++| |||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34579999999864 55677 99999999999999999999999998854
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2.1e-10 Score=93.70 Aligned_cols=51 Identities=18% Similarity=0.512 Sum_probs=43.1
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCCcccCCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH--STCPLCRASLLPDF 177 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 177 (494)
...+|+||++.|..++... .|+|.||..||.+||+++ .+||+||+++....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 4568999999998765544 499999999999999987 89999999876553
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=91.92 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=41.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH--STCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~--~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.. ...++.|+|.||..||..|+..+ .+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 356789999999974 34465599999999999999865 6899999976544
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=89.41 Aligned_cols=50 Identities=24% Similarity=0.641 Sum_probs=41.2
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh-cCCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL-SHSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~-~~~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|... ..++ |+|.||..||..|+. .+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3567899999998753 3366 999999999999994 567899999988664
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4.1e-10 Score=90.31 Aligned_cols=51 Identities=31% Similarity=0.693 Sum_probs=43.1
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc------CCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS------HSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~------~~tCPlCR~~l~~~~ 177 (494)
.+...|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+....
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 456799999999865 34567 9999999999999987 789999999887653
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=3.6e-10 Score=90.65 Aligned_cols=50 Identities=28% Similarity=0.596 Sum_probs=42.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc------CCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS------HSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~------~~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 456799999999875 33677 9999999999999987 67899999988664
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.6e-10 Score=99.80 Aligned_cols=53 Identities=23% Similarity=0.583 Sum_probs=45.1
Q ss_pred CCCCCcccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 124 NPFDCAVCLCEFEPE----DKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 124 ~~~~CaICLeef~~~----d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
+...|+||++.|... +.+..++ |||.||..||.+||+.+.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 567899999999653 4457777 9999999999999999999999999886543
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.98 E-value=3.3e-10 Score=90.61 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=42.7
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-HSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 457799999999874 44567 9999999999999987 78999999988654
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.95 E-value=3.8e-10 Score=95.32 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=41.8
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC-CCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH-STCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 176 (494)
+...|+||++.|.. .+..++ |+|.||..||..|+..+ .+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45689999999974 343376 99999999999999987 6999999998654
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=4.1e-10 Score=97.14 Aligned_cols=53 Identities=23% Similarity=0.604 Sum_probs=44.5
Q ss_pred CCCCCCcccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPE----DKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~----d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|... ..+..++ |+|.||..||++||+.+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 3567899999998642 3345666 999999999999999999999999988664
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=5.1e-10 Score=93.71 Aligned_cols=50 Identities=24% Similarity=0.654 Sum_probs=41.8
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
+...|+||++.|.. .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 45689999999974 333346 999999999999999999999999987653
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.92 E-value=1.8e-10 Score=91.88 Aligned_cols=50 Identities=26% Similarity=0.560 Sum_probs=42.1
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-------CCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-------HSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-------~~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 456789999999875 34567 9999999999999986 66899999988654
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=7.8e-10 Score=85.78 Aligned_cols=52 Identities=19% Similarity=0.496 Sum_probs=41.1
Q ss_pred CCCCccccc-ccCCCCce-eecCCCCCcccHHHHHHHHhc-CCCCCcccCCCCCCC
Q 042083 125 PFDCAVCLC-EFEPEDKL-RLLPKCSHAFHMECIDTWLLS-HSTCPLCRASLLPDF 177 (494)
Q Consensus 125 ~~~CaICLe-ef~~~d~v-r~LP~C~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~~ 177 (494)
+..|+||++ .|...... ..++ |||.||..||..|+.. ...||+||..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 568999999 77655443 3466 9999999999999765 467999999886543
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=9.9e-10 Score=84.53 Aligned_cols=43 Identities=28% Similarity=0.685 Sum_probs=36.4
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCCcc
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL---SHSTCPLC 169 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~---~~~tCPlC 169 (494)
.+...|+||++.|.. ...++ |+|.||..||..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 466799999999874 44567 999999999999998 45689998
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.90 E-value=6.2e-10 Score=94.74 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=42.6
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
+...|+||++.|.. .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 56789999999874 344447 999999999999999999999999988654
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.88 E-value=1.4e-09 Score=94.64 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=40.8
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHS-TCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~-tCPlCR~~l~~ 175 (494)
+...|+||++.|.. ...++ |||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45689999999974 45567 999999999999998554 89999999866
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=1.8e-09 Score=91.52 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=41.2
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCC---CCCcccCCCCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHS---TCPLCRASLLPDFS 178 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~---tCPlCR~~l~~~~~ 178 (494)
...|+||++.|.. ...++ |+|.||..||..|+..+. +||+||..+.....
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 4589999999864 34467 999999999999998754 89999998876543
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=1.2e-09 Score=99.52 Aligned_cols=49 Identities=33% Similarity=0.707 Sum_probs=41.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-HSTCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-~~tCPlCR~~l~~ 175 (494)
+...|+||++.|.. .+.+++ |+|.||..||..|+.. +.+||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45589999999875 444457 9999999999999997 7889999998854
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=81.71 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=35.7
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCCcc
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL---SHSTCPLC 169 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~---~~~tCPlC 169 (494)
.+...|+||++.|... .+++ |+|.||..||..|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3567899999999753 4577 999999999999954 56789998
No 42
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.82 E-value=2.1e-09 Score=88.55 Aligned_cols=49 Identities=29% Similarity=0.642 Sum_probs=40.3
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCCcccCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH--STCPLCRASLL 174 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~--~tCPlCR~~l~ 174 (494)
.+...|+||++.|.. ...++.|||.||..||..|+..+ .+||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456789999999974 34555599999999999999754 58999999873
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.76 E-value=5.5e-09 Score=94.92 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=41.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHS-TCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 176 (494)
+...|+||++.|.. ...++ |+|.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999874 44577 999999999999998754 899999998765
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.76 E-value=3.2e-09 Score=91.93 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=41.8
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHS-TCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.. ...++ |+|.||..||..|+.... +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 356789999999874 34567 999999999999998765 999999988654
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.70 E-value=7.8e-09 Score=88.82 Aligned_cols=50 Identities=28% Similarity=0.520 Sum_probs=41.8
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCCcccCCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-HSTCPLCRASLLPDF 177 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~~ 177 (494)
+...|+||++.|.. ...++ |||.||..||..|+.. +.+||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 35689999999864 34467 9999999999999987 779999999886643
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.68 E-value=2.7e-09 Score=91.54 Aligned_cols=48 Identities=23% Similarity=0.638 Sum_probs=40.3
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-HSTCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-~~tCPlCR~~l~~ 175 (494)
+...|+||++.|.. ...++ |+|.||..||..|+.. +.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 35689999999874 44567 9999999999999976 6789999998753
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.68 E-value=8.1e-09 Score=85.26 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
.+.+.|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 357899999999975 55677 999999999999999999999999987654
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.66 E-value=9.7e-09 Score=87.59 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=44.4
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
.+.+.|+||++.|.+ ..+++ |||.|+..||..||..+.+||+||.++....
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 367899999999975 55677 9999999999999999999999999887643
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.65 E-value=1.3e-08 Score=86.43 Aligned_cols=51 Identities=25% Similarity=0.207 Sum_probs=44.1
Q ss_pred CCCCCCcccccccCCCCceeecCCCC-CcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCS-HAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~-H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
.+.+.|+||++.|.+ ..+++ || |.|+..||..||..+.+||+||.++....
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 357899999999975 45677 99 99999999999999999999999887653
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.62 E-value=1.6e-08 Score=105.17 Aligned_cols=48 Identities=23% Similarity=0.676 Sum_probs=41.6
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh-cCCCCCcccCCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL-SHSTCPLCRASLLPD 176 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~-~~~tCPlCR~~l~~~ 176 (494)
...|+||++.+.. +..+| |||.||..||..|+. .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999854 66788 999999999999999 688999999988654
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.62 E-value=3.9e-08 Score=80.43 Aligned_cols=54 Identities=22% Similarity=0.479 Sum_probs=41.9
Q ss_pred CCCCCCcccccccCCCCce-eecCCCCCcccHHHHHHHHh-cCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKL-RLLPKCSHAFHMECIDTWLL-SHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~v-r~LP~C~H~FH~~CI~~WL~-~~~tCPlCR~~l~~~~ 177 (494)
.++..|+||++.+...+.. .-++ |||.||..||..|+. .+..||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4667899999998654332 2244 999999999999875 3568999999887653
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.61 E-value=1.7e-08 Score=79.07 Aligned_cols=47 Identities=17% Similarity=0.413 Sum_probs=39.3
Q ss_pred CCCCCcccccccCCCCceeec--CCCCCc-ccHHHHHHHHhcCCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLL--PKCSHA-FHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~L--P~C~H~-FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
++..|.||++.+.+ ..++ | |||. |+..|+..|++.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45689999998654 3343 8 9999 899999999999999999999874
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=1.8e-08 Score=87.10 Aligned_cols=47 Identities=21% Similarity=0.554 Sum_probs=39.2
Q ss_pred CCCCCcccccccCCCCceeec-CCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLL-PKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~L-P~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
+...|+||++.|.. ...+ + |||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 45689999999864 3445 6 999999999999987 7899999988543
No 54
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.53 E-value=2.1e-08 Score=102.89 Aligned_cols=53 Identities=23% Similarity=0.627 Sum_probs=41.1
Q ss_pred CCCCCcccccccCCCCce----eecCCCCCcccHHHHHHHHhcC-----------CCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKL----RLLPKCSHAFHMECIDTWLLSH-----------STCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~v----r~LP~C~H~FH~~CI~~WL~~~-----------~tCPlCR~~l~~~ 176 (494)
...+|+||++.+..+..+ ...++|+|.||..||.+||++. .+||.||+++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 566899999999873322 2234599999999999999752 4699999988654
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.52 E-value=2.3e-08 Score=90.00 Aligned_cols=50 Identities=18% Similarity=0.435 Sum_probs=41.1
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHS-TCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~-tCPlCR~~l~~~ 176 (494)
.+...|+||++.|... ..++ |||.||..||..|+.... +||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 3567899999998753 4466 999999999999998664 899999987543
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=3.8e-08 Score=74.85 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=39.1
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.. ...++ |+|.||..||..| ...||+||+.+..+
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 356789999999975 46787 9999999999884 67899999987654
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=4.8e-08 Score=93.93 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=41.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-HSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~ 176 (494)
..+.|+||++.|.+ ..+++ |||.|+..||..|+.. +.+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 57789999999975 55677 9999999999999986 44599999988654
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.47 E-value=6.3e-08 Score=75.59 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=38.9
Q ss_pred CCCCCcccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHA-FHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~-FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
....|.||++.+.+. .+..+| |||. |+..|+..|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345899999876531 122348 9998 999999999988889999999874
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.43 E-value=1.4e-07 Score=73.65 Aligned_cols=47 Identities=23% Similarity=0.621 Sum_probs=37.0
Q ss_pred CCCCCcccccccCCCCceeecCCCC--C---cccHHHHHHHHhc--CCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCS--H---AFHMECIDTWLLS--HSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~--H---~FH~~CI~~WL~~--~~tCPlCR~~l~ 174 (494)
+...|.||+++. ++.+ ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 556899999984 2333 577 65 4 9999999999974 678999998764
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.43 E-value=6.4e-08 Score=77.58 Aligned_cols=44 Identities=20% Similarity=0.606 Sum_probs=37.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHA-FHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~-FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
+...|+||++.+.. ...+| |+|. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34589999998764 66778 9999 999999998 889999998754
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=79.21 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=39.9
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC------CCCCc--ccCC-CCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH------STCPL--CRAS-LLP 175 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~------~tCPl--CR~~-l~~ 175 (494)
...+.|+||++.|.+ ..+++.|||.|+..||..||..+ .+||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 356789999999874 44454499999999999999864 48999 9876 544
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.40 E-value=1.3e-07 Score=86.36 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=41.4
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC-CCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH-STCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 176 (494)
.+...|+||++.|.. ...++ |||.||..||..|+... .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 456799999999875 34567 99999999999999864 4999999987653
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.31 E-value=2.6e-07 Score=76.84 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=39.9
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc--------CCCCCc--ccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS--------HSTCPL--CRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~--------~~tCPl--CR~~ 172 (494)
+..+|+||+++|...+.+.+++ |+|.||..||..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999998766666666 9999999999999963 237999 9987
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.25 E-value=3.2e-07 Score=86.27 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=41.9
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC-CCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH-STCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~-~tCPlCR~~l~~~ 176 (494)
...+.|+||++.|.+ ..+++ |||.|+..||..|+..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 367799999999985 45667 99999999999999874 4799999988654
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5.3e-07 Score=72.15 Aligned_cols=44 Identities=20% Similarity=0.607 Sum_probs=35.9
Q ss_pred CCCCcccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHA-FHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~-FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
...|+||++.+.. +..+| |+|. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4479999998754 56678 9999 99999964 47899999988653
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.3e-06 Score=69.38 Aligned_cols=45 Identities=33% Similarity=0.747 Sum_probs=37.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHA-FHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~-FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
+...|.||++.+. .+.++| |+|. |+..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4668999998865 377888 9999 99999984 57899999988654
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.09 E-value=1.2e-06 Score=68.37 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=42.0
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFS 178 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 178 (494)
.+.|+||++.+.+ ..+++.|||.|...||.+||+.+.+||+++.+|...+.
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 3689999999984 34552399999999999999988899999998876543
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.06 E-value=1.2e-06 Score=71.32 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=36.6
Q ss_pred CCCCcccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHA-FHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~-FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
...|.||++.+.. +..+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4589999988754 67788 9999 999999987 3899999987653
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.95 E-value=1.8e-06 Score=88.49 Aligned_cols=44 Identities=27% Similarity=0.723 Sum_probs=37.8
Q ss_pred CCCCCcccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHA-FHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~-FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
+...|+||++.+.. +..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 56789999999864 66778 9999 999999998 789999998754
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.93 E-value=3.3e-06 Score=83.85 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=41.6
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCCc--ccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH--STCPL--CRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~--~tCPl--CR~~l~~~~ 177 (494)
.....|+||++.|.. .|+.+. |||.|+..||..|+..+ .+||+ ||+.+....
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 356689999999964 565555 99999999999999864 47999 999775543
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.55 E-value=5e-05 Score=74.09 Aligned_cols=51 Identities=18% Similarity=0.511 Sum_probs=41.1
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCC--CCCcccCCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHS--TCPLCRASLLPDF 177 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~--tCPlCR~~l~~~~ 177 (494)
....|.||.+....+..+ +.|+|.||..|+..|++.+. .||.|+.......
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 356899999998876433 34999999999999998754 8999999876653
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.53 E-value=4.7e-05 Score=65.50 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=37.9
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCCcccCCCCC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-HSTCPLCRASLLP 175 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-~~tCPlCR~~l~~ 175 (494)
-|.+|--.|. ...|++| |+|+|+.+|+..|.++ .++||+|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4778876654 5788999 9999999999999864 6899999987744
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.90 E-value=0.1 Score=44.52 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=39.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
-+...|-.|+-+... +... ..|++|..|+...|....-||+|..+|+...
T Consensus 26 ~G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 356789999965432 3221 4699999999999888889999999998873
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.47 E-value=0.16 Score=40.14 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=33.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCC----CCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHS----TCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~----tCPlCR~~ 172 (494)
....|.||.+. ++ +..--.|...||..|++..|.... .||.|...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 44579999743 44 444446999999999998886543 69999764
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.42 E-value=0.17 Score=41.77 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=26.0
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHH
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTW 159 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~W 159 (494)
+..|.||+++|........+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998764433444476 9999999999984
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.44 E-value=0.73 Score=38.59 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=24.7
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTW 159 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~W 159 (494)
.+..|.||- .|..++....-- |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence 567899995 444444444333 9999999999995
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.13 E-value=0.26 Score=37.93 Aligned_cols=48 Identities=19% Similarity=0.449 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh-----cCCCCCcccC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL-----SHSTCPLCRA 171 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~-----~~~tCPlCR~ 171 (494)
+...|+||...+.++...+..-.|..-||..|+..-.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 55679999999865554444446999999999865322 3457999965
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=81.11 E-value=0.59 Score=43.84 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCc---eeecCCCCCcccHHHHHHH------Hh-----cCCCCCcccCCC
Q 042083 126 FDCAVCLCEFEPEDK---LRLLPKCSHAFHMECIDTW------LL-----SHSTCPLCRASL 173 (494)
Q Consensus 126 ~~CaICLeef~~~d~---vr~LP~C~H~FH~~CI~~W------L~-----~~~tCPlCR~~l 173 (494)
..|+||...|.+++. ++..-.|..-||..|+.-= +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999988763 4444469999999998421 11 156899998743
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.32 E-value=0.82 Score=35.21 Aligned_cols=45 Identities=29% Similarity=0.666 Sum_probs=32.0
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCCcccC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS----HSTCPLCRA 171 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~----~~tCPlCR~ 171 (494)
.++..|.||... ++ +.....|...||..|+..=|.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356689999863 33 4444469999999999875533 236999965
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.58 E-value=0.42 Score=44.01 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=33.0
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRASL 173 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~~l 173 (494)
++..|.||... ++ +.....|...||..|+..-|... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999843 44 44445699999999998766542 3699998643
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.40 E-value=1 Score=33.09 Aligned_cols=44 Identities=36% Similarity=0.742 Sum_probs=29.5
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRA 171 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~ 171 (494)
.|.||...-..+ .+..--.|...||..|+..=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764433 344444699999999997534332 25999964
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=76.47 E-value=0.56 Score=44.09 Aligned_cols=46 Identities=39% Similarity=0.612 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRASL 173 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~~l 173 (494)
+...|.||... ++ +.....|...||..|+.+-|... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 55689999843 33 55555699999999998766543 3699998643
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=73.40 E-value=0.86 Score=35.10 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=31.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~~ 172 (494)
+...|.||... ++ +...-.|...||..|+..=|... -.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 46679999852 33 44444599999999998644432 259999764
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.84 E-value=4.4 Score=32.41 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=32.9
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh-----cCCCCCcccCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL-----SHSTCPLCRASL 173 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~-----~~~tCPlCR~~l 173 (494)
+...| ||...+..+...+..-.|..-||..|+.--.. ..-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34467 99988864444444445999999999853221 345799998754
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.86 E-value=1.2 Score=37.63 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=31.0
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCCccc
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS----HSTCPLCR 170 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~----~~tCPlCR 170 (494)
++..|.||.+.-...+.+.- ..|...||..||...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999876432223444 459999999999887642 22466664
No 86
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=68.28 E-value=2.5 Score=48.75 Aligned_cols=50 Identities=26% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCCCCcccccccCCCCceeecCCCC-CcccHHHHHHHHhcCCCCCcccCCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCS-HAFHMECIDTWLLSHSTCPLCRASLLPDF 177 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~-H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 177 (494)
+.+.|+|-++-+.+ ..++| .| +.|-..+|.+||..+.+||+=|.+|....
T Consensus 890 ~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 67789999999875 55677 76 68999999999999999999999887543
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=67.52 E-value=1.6 Score=34.48 Aligned_cols=49 Identities=16% Similarity=0.402 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCCcccCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS----HSTCPLCRASL 173 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~----~~tCPlCR~~l 173 (494)
+...|.||..... ++.+...-.|.-.||..|+..-+.. .-.||.|+..+
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3456999988764 4444444469999999999764432 34699997654
No 88
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.12 E-value=1.5 Score=37.46 Aligned_cols=45 Identities=31% Similarity=0.686 Sum_probs=30.5
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRA 171 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~ 171 (494)
.|.||...-.+++.+..--.|...||..|++.=|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888886533334455555699999999997655432 26999874
No 89
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.12 E-value=1.3 Score=40.24 Aligned_cols=48 Identities=17% Similarity=0.525 Sum_probs=33.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHH-----hcCCCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWL-----LSHSTCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL-----~~~~tCPlCR~~ 172 (494)
+...| ||...+..+..+...-.|...||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45579 9998876444444445699999999995322 124579999763
No 90
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=66.77 E-value=2.1 Score=31.80 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCcccccccCCCCceeecC-CCCCcccHHHHHHHH----hcCCCCCccc
Q 042083 127 DCAVCLCEFEPEDKLRLLP-KCSHAFHMECIDTWL----LSHSTCPLCR 170 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP-~C~H~FH~~CI~~WL----~~~~tCPlCR 170 (494)
.|.||...+.+++..+.-- .|..-||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5788988886655555544 599999999975322 2566899885
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.83 E-value=4.2 Score=31.79 Aligned_cols=34 Identities=24% Similarity=0.589 Sum_probs=26.5
Q ss_pred CCCCCcccccccCCCCceeecC-CCCCcccHHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLP-KCSHAFHMECID 157 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP-~C~H~FH~~CI~ 157 (494)
....|.+|...+.+++..+..- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3457999999998776666665 699999999984
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.15 E-value=0.8 Score=34.53 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=30.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRA 171 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~ 171 (494)
.++..|.||... ++ +.....|...||..|+..=|... -.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356689999864 34 44444699999999998644332 24888753
No 93
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.87 E-value=1.3 Score=36.55 Aligned_cols=52 Identities=17% Similarity=0.387 Sum_probs=35.8
Q ss_pred CCCCcccccccCC-CCceeecCCCCCcccHHHHHHHHhc--------CCCCCcccCCCCCC
Q 042083 125 PFDCAVCLCEFEP-EDKLRLLPKCSHAFHMECIDTWLLS--------HSTCPLCRASLLPD 176 (494)
Q Consensus 125 ~~~CaICLeef~~-~d~vr~LP~C~H~FH~~CI~~WL~~--------~~tCPlCR~~l~~~ 176 (494)
...|.||...-.. +..+.+.-.|...||..|+..=|.. .-.|+.|+......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 4579999976432 2455566679999999999865431 23699997655443
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.46 E-value=2.2 Score=35.79 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc---CCCCCcccC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS---HSTCPLCRA 171 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~---~~tCPlCR~ 171 (494)
...| ||......+..|.. -.|.-.||..|+..=+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 88877665554444 459999999998653222 237999964
No 95
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.42 E-value=2 Score=40.02 Aligned_cols=44 Identities=27% Similarity=0.611 Sum_probs=30.3
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCCcccCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS----HSTCPLCRAS 172 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~----~~tCPlCR~~ 172 (494)
+..|.+|... ++.+ ....|...||..|+..=|.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3579999844 4444 44459999999999764432 2259999764
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=60.27 E-value=1.2 Score=34.65 Aligned_cols=45 Identities=33% Similarity=0.606 Sum_probs=31.3
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRA 171 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~ 171 (494)
.++..|.||... ++ +.....|...||..|+..=|... -.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356789999853 34 44444699999999998644332 25999965
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=58.34 E-value=4.3 Score=31.10 Aligned_cols=49 Identities=18% Similarity=0.497 Sum_probs=33.6
Q ss_pred CCCCCcccccccCC-CCceeecCCCCCcccHHHHHHHHh-------cCCCCCcccCC
Q 042083 124 NPFDCAVCLCEFEP-EDKLRLLPKCSHAFHMECIDTWLL-------SHSTCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~-~d~vr~LP~C~H~FH~~CI~~WL~-------~~~tCPlCR~~ 172 (494)
+...|.||...... +..+.....|.-.||..|+..=|. ..-.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 56689999976532 345555567999999999875331 22368888653
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=58.25 E-value=1.5 Score=33.46 Aligned_cols=45 Identities=29% Similarity=0.662 Sum_probs=30.9
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~~ 172 (494)
++..|.||... ++.+ ....|...||..|+..=|... -.||.|...
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45689999863 4444 444699999999998644332 258888653
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=58.05 E-value=4.3 Score=33.91 Aligned_cols=46 Identities=28% Similarity=0.594 Sum_probs=32.5
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRAS 172 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~~ 172 (494)
.+...|.||... ++ +.....|.-.||..|+.+=|... -.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 356689999854 34 44444699999999997755432 259999754
No 100
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.80 E-value=3.1 Score=32.96 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=31.5
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHH---------hcCCCCCcccCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWL---------LSHSTCPLCRAS 172 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL---------~~~~tCPlCR~~ 172 (494)
...| ||...+..+..|..- .|..-||..|+..-. ..+..||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4467 898887644444444 599999999984211 246789999753
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.56 E-value=0.89 Score=37.91 Aligned_cols=48 Identities=29% Similarity=0.564 Sum_probs=32.4
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcC----CCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSH----STCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~----~tCPlCR~~ 172 (494)
+...|.||...-.. +.+...-.|...||..|+..=|... =.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45579999876433 3344445699999999997433332 259999653
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=56.88 E-value=10 Score=34.17 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh-----------cCCCCCcccC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL-----------SHSTCPLCRA 171 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~-----------~~~tCPlCR~ 171 (494)
..+..|.||.+- ++ +...-.|...||..||.+=|. ..-.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456789999853 44 444446999999999996552 1236999964
No 103
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=55.88 E-value=5.2 Score=33.97 Aligned_cols=48 Identities=27% Similarity=0.581 Sum_probs=34.3
Q ss_pred CCCcccccccCCCCceeecC-CCCCcccHHHHHHHH-----h-----cCCCCCcccCCC
Q 042083 126 FDCAVCLCEFEPEDKLRLLP-KCSHAFHMECIDTWL-----L-----SHSTCPLCRASL 173 (494)
Q Consensus 126 ~~CaICLeef~~~d~vr~LP-~C~H~FH~~CI~~WL-----~-----~~~tCPlCR~~l 173 (494)
..|.||...|..+......- .|..-||..|+.--- . .+-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 47999999987665555553 599999999984321 0 345799998654
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.29 E-value=13 Score=31.55 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=28.9
Q ss_pred CCCCccccccc-----CCCCceeecCCCCCcccHHHHHHH------Hh-cCCCCCccc
Q 042083 125 PFDCAVCLCEF-----EPEDKLRLLPKCSHAFHMECIDTW------LL-SHSTCPLCR 170 (494)
Q Consensus 125 ~~~CaICLeef-----~~~d~vr~LP~C~H~FH~~CI~~W------L~-~~~tCPlCR 170 (494)
...|.+|+..- ..++.+..-..|+..||..||..+ +. ..-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 34799998763 122344444459999999999532 22 233677775
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=51.32 E-value=2.1 Score=34.78 Aligned_cols=44 Identities=39% Similarity=0.779 Sum_probs=27.3
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhc----C-CCCCcccC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS----H-STCPLCRA 171 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~----~-~tCPlCR~ 171 (494)
.|.||...-.. +.+..--.|...||..|+..-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35556544322 344444469999999999865543 1 35888875
No 106
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=50.36 E-value=28 Score=27.86 Aligned_cols=12 Identities=25% Similarity=0.471 Sum_probs=4.9
Q ss_pred CCCCCCccchhh
Q 042083 73 RPTNRDPEDLDN 84 (494)
Q Consensus 73 Rr~~r~~e~~~~ 84 (494)
+++++..+.+.+
T Consensus 35 rhRrrqAeRMSQ 46 (70)
T 2klu_A 35 RHRRRQAERMSQ 46 (70)
T ss_dssp SCCSSSCTTSSH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 107
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.97 E-value=7.3 Score=32.61 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=28.4
Q ss_pred CCCCCcccccccCCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPK--CS-HAFHMECIDTWLLS----HSTCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~--C~-H~FH~~CI~~WL~~----~~tCPlCR~~ 172 (494)
+...| ||..... ++ +...-. |. .-||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 45567 9988653 33 333334 55 689999997 333 3469999764
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.86 E-value=3.8 Score=32.38 Aligned_cols=44 Identities=36% Similarity=0.717 Sum_probs=27.5
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCcccC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-----HSTCPLCRA 171 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-----~~tCPlCR~ 171 (494)
.|.||...-. +..+..--.|...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4566765422 2344444569999999999854432 225888864
No 109
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.26 E-value=4.4 Score=32.46 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=30.8
Q ss_pred CCCCCcccccccCCCCceeec-CCCCCcccHHHHHHHH---------hcCCCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLL-PKCSHAFHMECIDTWL---------LSHSTCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~L-P~C~H~FH~~CI~~WL---------~~~~tCPlCR~~ 172 (494)
....| ||-.....+..|..- +.|..-||..|+.--- ..+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45568 788775444444333 0499999999985321 124579999764
No 110
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.26 E-value=4 Score=32.97 Aligned_cols=44 Identities=32% Similarity=0.697 Sum_probs=28.7
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCcccC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-----HSTCPLCRA 171 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-----~~tCPlCR~ 171 (494)
.|.||...-.. ..+..--.|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67888764333 344455569999999999853332 225888864
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.19 E-value=18 Score=28.59 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCCCCccccccc-CCCCceeecCCCCCcccHHHHHHHHh--cCCCCCcccC
Q 042083 124 NPFDCAVCLCEF-EPEDKLRLLPKCSHAFHMECIDTWLL--SHSTCPLCRA 171 (494)
Q Consensus 124 ~~~~CaICLeef-~~~d~vr~LP~C~H~FH~~CI~~WL~--~~~tCPlCR~ 171 (494)
+...|.||...- ..++.+...-.|.-.||..|+..-+. ..=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 566899998763 23345555567999999999875321 1225888754
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=45.95 E-value=21 Score=31.73 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=31.1
Q ss_pred CCCCCCcccccccCCCCceeecCCCCCcccHHHHHHH-----H-hc-----CCCCCcccC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTW-----L-LS-----HSTCPLCRA 171 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~W-----L-~~-----~~tCPlCR~ 171 (494)
..+..|.||.+- ++ +..--.|...||..||.+= | .. .=.|++|+.
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 356689999843 33 4444569999999999974 2 21 236999954
No 113
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=43.74 E-value=4.9 Score=38.99 Aligned_cols=44 Identities=39% Similarity=0.779 Sum_probs=25.5
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhc-----CCCCCcccC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS-----HSTCPLCRA 171 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~-----~~tCPlCR~ 171 (494)
.|.+|...=.. ..+...-.|...||..|+.+=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 47777654222 334444569999999999854432 225999965
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=43.02 E-value=12 Score=29.66 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=28.4
Q ss_pred CCCCCcccccccCCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPK--CS-HAFHMECIDTWLLS----HSTCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~--C~-H~FH~~CI~~WL~~----~~tCPlCR~~ 172 (494)
+...| ||..... ++ +...-. |. ..||..|+. |.. +-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 45567 8987643 43 333334 55 689999997 433 3369999764
No 115
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=42.67 E-value=4.2 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.487 Sum_probs=30.3
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCCcccC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL---SHSTCPLCRA 171 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~---~~~tCPlCR~ 171 (494)
+...| ||...+..+..|..- .|..-||..|+..--. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 45578 998877633344444 5999999999864221 2346888864
No 116
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=41.76 E-value=15 Score=30.25 Aligned_cols=53 Identities=19% Similarity=0.378 Sum_probs=35.0
Q ss_pred CCCCCccccccc-CCCCceeecCCCCCcccHHHHHHHHh--cCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEF-EPEDKLRLLPKCSHAFHMECIDTWLL--SHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef-~~~d~vr~LP~C~H~FH~~CI~~WL~--~~~tCPlCR~~l~~~ 176 (494)
+...|.||...- ...+.+.....|.-.||..|+..-+. ..-.||.|.......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 566899999753 22335555557999999999975321 123599997654443
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=41.71 E-value=18 Score=30.83 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCCcccccccCC------CCceeecCCCCCcccHHHHHHHHh-------cCCCCCccc
Q 042083 126 FDCAVCLCEFEP------EDKLRLLPKCSHAFHMECIDTWLL-------SHSTCPLCR 170 (494)
Q Consensus 126 ~~CaICLeef~~------~d~vr~LP~C~H~FH~~CI~~WL~-------~~~tCPlCR 170 (494)
..|.||+..-.. ++.+..-..|+..||..||..++. ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 369999876421 223444445999999999976531 233577764
No 118
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=40.16 E-value=45 Score=28.10 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCCCcccccccC---CCCceeecCCCCCcccHHHHHHHHh-cCCCCCcccCCCCC
Q 042083 125 PFDCAVCLCEFE---PEDKLRLLPKCSHAFHMECIDTWLL-SHSTCPLCRASLLP 175 (494)
Q Consensus 125 ~~~CaICLeef~---~~d~vr~LP~C~H~FH~~CI~~WL~-~~~tCPlCR~~l~~ 175 (494)
...|.||-+++- +++.....-.|+--.|..|.+-=.+ .++.||-|+..+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 458999999963 3333333334888889999876544 47899999987754
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.94 E-value=16 Score=31.34 Aligned_cols=48 Identities=21% Similarity=0.446 Sum_probs=31.6
Q ss_pred CCCCCCcccccccCCCCceeecC--CCCCcccHHHHHHHHhcC----CCCCcccCCCCCC
Q 042083 123 KNPFDCAVCLCEFEPEDKLRLLP--KCSHAFHMECIDTWLLSH----STCPLCRASLLPD 176 (494)
Q Consensus 123 ~~~~~CaICLeef~~~d~vr~LP--~C~H~FH~~CI~~WL~~~----~tCPlCR~~l~~~ 176 (494)
.++..|.+|.+ .++ +..-- .|...||..|+. |... -.||.|+-.+...
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 35678999983 233 33332 488999999998 5432 2588886655544
No 120
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.26 E-value=7.1 Score=39.68 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh-------cCCCCCcccCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL-------SHSTCPLCRASL 173 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~-------~~~tCPlCR~~l 173 (494)
....|.+|...|..-..-.....||++||..|...++. ....|-.|-..|
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34579999999975433333345999999999977652 134577775443
No 121
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.88 E-value=21 Score=31.06 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHH
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDT 158 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~ 158 (494)
...|.+|...|..-..-...-.||++|+..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999975443334445999999999543
No 122
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.83 E-value=5.4 Score=33.62 Aligned_cols=44 Identities=25% Similarity=0.524 Sum_probs=28.5
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCCcccC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS----HSTCPLCRA 171 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~----~~tCPlCR~ 171 (494)
.|.||...-.. +.+..-..|...||..|+..=|.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 46777755333 345555569999999999864433 225888855
No 123
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.71 E-value=18 Score=33.99 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=25.3
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDT 158 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~ 158 (494)
+...|.+|...|..-..-.....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45689999999975443334445999999988544
No 124
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=34.71 E-value=31 Score=35.73 Aligned_cols=49 Identities=16% Similarity=0.408 Sum_probs=32.4
Q ss_pred CCCcccccccCCCCceeecCCCCCc--ccHHHHHHHHhcC--CCCCcccCCCCCCC
Q 042083 126 FDCAVCLCEFEPEDKLRLLPKCSHA--FHMECIDTWLLSH--STCPLCRASLLPDF 177 (494)
Q Consensus 126 ~~CaICLeef~~~d~vr~LP~C~H~--FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 177 (494)
..|+|-+..|. ..+|-.. |.|. |-..-+.....+. -.||+|.+.+...+
T Consensus 250 L~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 36998877765 3577776 9998 6554444443333 36999988775543
No 125
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.55 E-value=22 Score=29.13 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=25.9
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHH
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTW 159 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~W 159 (494)
...|.+|...|..-..-.....||++|+..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45799999999754433344469999999997654
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.29 E-value=5.6 Score=34.90 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=32.1
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRAS 172 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~ 172 (494)
...|..|-..|..-..-...-.||.+|+..|..........|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 347999999997543333344699999999977766556778888553
No 127
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.17 E-value=15 Score=28.50 Aligned_cols=43 Identities=23% Similarity=0.454 Sum_probs=29.4
Q ss_pred CCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcc
Q 042083 126 FDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLC 169 (494)
Q Consensus 126 ~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlC 169 (494)
..|--|+..|... ....-++|++.|+.+|=.---..=.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999998532 224566799999999933322334579988
No 128
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.65 E-value=19 Score=34.18 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=25.6
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDT 158 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~ 158 (494)
....|.+|...|..-..-.....||++||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 44689999999975543334446999999999654
No 129
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.27 E-value=20 Score=31.82 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCCCCcccccccC-CCCceeecCCCCCcccHHHHH
Q 042083 124 NPFDCAVCLCEFE-PEDKLRLLPKCSHAFHMECID 157 (494)
Q Consensus 124 ~~~~CaICLeef~-~~d~vr~LP~C~H~FH~~CI~ 157 (494)
+...|++|...|. ....-+....|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4668999999993 323233444599998888843
No 130
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.92 E-value=27 Score=36.02 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCcccccccCCCCceeecCCCCCc--ccHHHHHHHHhcC--CCCCcccCCCCCC
Q 042083 126 FDCAVCLCEFEPEDKLRLLPKCSHA--FHMECIDTWLLSH--STCPLCRASLLPD 176 (494)
Q Consensus 126 ~~CaICLeef~~~d~vr~LP~C~H~--FH~~CI~~WL~~~--~tCPlCR~~l~~~ 176 (494)
..|+|-+..|. ..+|-.. |.|. |-..-+.....+. -.||+|.+.+...
T Consensus 216 L~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 36998877765 3577776 9998 6655555444433 3699999887654
No 131
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.05 E-value=29 Score=27.95 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=25.6
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDT 158 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~ 158 (494)
+...|.+|...|..-..-...-.||++|+..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45589999999976543333445999999999654
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.40 E-value=30 Score=27.10 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=23.3
Q ss_pred CCCcccccccCCCCceeecCCCCCcccHHHHH
Q 042083 126 FDCAVCLCEFEPEDKLRLLPKCSHAFHMECID 157 (494)
Q Consensus 126 ~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~ 157 (494)
..|.+|...|..-..-...-.||++|+..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999997543333334599999999854
No 133
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=31.10 E-value=22 Score=26.44 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=31.1
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
...|+.|-..+...+.+... -+..||..|. .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 45799999999877665432 5678998875 588898877543
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.06 E-value=31 Score=28.25 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDT 158 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~ 158 (494)
+...|.+|...|..-..-...-.||++|+..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 44579999999976543333445999999999654
No 135
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=30.24 E-value=69 Score=26.65 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=30.0
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhc
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLS 162 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~ 162 (494)
....|.+|.+.+++..-|..-..=+|.||-.|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456899999999876555433334699999999998875
No 136
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.15 E-value=30 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=25.4
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDT 158 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~ 158 (494)
+...|.+|...|..-..-...-.||++|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999999975443333445999999999654
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.14 E-value=36 Score=27.37 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHH
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECI 156 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI 156 (494)
+...|.+|...|..-..-...-.||++|+..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 345899999999654333333359999998883
No 138
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.13 E-value=21 Score=27.83 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=32.2
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHH----hcCCCCCcccCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWL----LSHSTCPLCRAS 172 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL----~~~~tCPlCR~~ 172 (494)
....| ||...+..++.....-.|..-||..|+..-- ..+..||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7988776665444444699999999986421 124569999653
No 139
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.82 E-value=53 Score=24.61 Aligned_cols=40 Identities=25% Similarity=0.499 Sum_probs=28.0
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
...|+.|-+.+...+.+... -+..||..| ..|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 34799999888764433222 468899877 45889988874
No 140
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.81 E-value=45 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=28.9
Q ss_pred CCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 126 FDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 126 ~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
..|+.|-+.+...+.+... -+..||..| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4799999998876544332 467899876 458899887754
No 141
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.36 E-value=60 Score=24.23 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=29.2
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
...|+.|-+.+...+.+... -+..||..| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCC
Confidence 34799999998865444322 578899877 458899887754
No 142
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.28 E-value=55 Score=24.79 Aligned_cols=43 Identities=21% Similarity=0.506 Sum_probs=30.5
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
....|+-|-+.+...+.+... -+..||..| ..|-.|..+|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 345899999998765555332 467899877 4588898877543
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.02 E-value=14 Score=28.18 Aligned_cols=43 Identities=28% Similarity=0.630 Sum_probs=27.4
Q ss_pred CCCCCcccccccCCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCCcccC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPK--CS-HAFHMECIDTWLLS----HSTCPLCRA 171 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 171 (494)
+...| ||..... ++ +..--. |. .-||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44467 8987643 33 444444 65 699999997 333 336998864
No 144
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.92 E-value=13 Score=39.60 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=31.0
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHh-----cCCCCCcccCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL-----SHSTCPLCRAS 172 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~-----~~~tCPlCR~~ 172 (494)
...| ||...+..+..+...-.|.--||..|+.---. .+-.||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3346 89888764444444446999999999853211 23579999754
No 145
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.86 E-value=56 Score=25.11 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=30.1
Q ss_pred CCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 126 FDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 126 ~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
..|+.|-+.+..++.+... -+..||..| ..|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 4799999998876654332 577899877 4588998877543
No 146
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.74 E-value=41 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.514 Sum_probs=26.8
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
.|+.|-..+...+.+... -++.||..| ..|-.|...|.
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT--------CBCTTTCCBCC
T ss_pred cccCCCCeecCCceEEEE--CCccccccc--------CccccCCCCCC
Confidence 699999888765544322 477888877 34888888773
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.47 E-value=49 Score=24.88 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=29.2
Q ss_pred CCCCcccccccCC--CCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 125 PFDCAVCLCEFEP--EDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 125 ~~~CaICLeef~~--~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
...|+-|-+.+.. ++.+... -+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCC
Confidence 3479999999875 3333322 578899877 469999888753
No 148
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.88 E-value=9.6 Score=30.62 Aligned_cols=19 Identities=32% Similarity=0.782 Sum_probs=15.3
Q ss_pred CCCCcccHHHHHHHHhcCCCC
Q 042083 146 KCSHAFHMECIDTWLLSHSTC 166 (494)
Q Consensus 146 ~C~H~FH~~CI~~WL~~~~tC 166 (494)
.|+|.|+..|...|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999999843 445
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.82 E-value=49 Score=25.86 Aligned_cols=40 Identities=28% Similarity=0.584 Sum_probs=30.4
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
....|+-|-+.+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34579999999987766554 467899877 45999988775
No 150
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.70 E-value=33 Score=26.23 Aligned_cols=38 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 127 DCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 127 ~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
.|+.|-+.+..++.+.. -+..||..| ..|-.|+.+|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 36667766665444432 356677655 346677666544
No 151
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.64 E-value=12 Score=28.60 Aligned_cols=43 Identities=28% Similarity=0.622 Sum_probs=26.7
Q ss_pred CCCCCcccccccCCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCCcccC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPK--CS-HAFHMECIDTWLLS----HSTCPLCRA 171 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 171 (494)
+...| ||..... ++ +...-. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34457 8987642 33 333334 44 689999997 433 336998864
No 152
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.54 E-value=38 Score=25.82 Aligned_cols=40 Identities=23% Similarity=0.469 Sum_probs=30.8
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCC
Q 042083 125 PFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLP 175 (494)
Q Consensus 125 ~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 175 (494)
...|+.|-+.+..++.+.. -+..||..| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 4579999999987776543 578899877 459999888764
No 153
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.86 E-value=18 Score=25.17 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=10.4
Q ss_pred CCCCCcccccccCCC
Q 042083 124 NPFDCAVCLCEFEPE 138 (494)
Q Consensus 124 ~~~~CaICLeef~~~ 138 (494)
+.+.|+||+.++...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 346788888777643
No 154
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.42 E-value=14 Score=27.25 Aligned_cols=41 Identities=20% Similarity=0.485 Sum_probs=26.1
Q ss_pred ccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCCcccC
Q 042083 130 VCLCEFEPEDKLRLLPKCSHAFHMECIDTWLL---SHSTCPLCRA 171 (494)
Q Consensus 130 ICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~---~~~tCPlCR~ 171 (494)
||......+..+.- -.|..-||..|+..--. .+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~C-d~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIEC-NECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEEC-TTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEc-CCCCccccccccCCCcccCCCcEECcCCCC
Confidence 67766553344443 45999999999864221 2446888865
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.39 E-value=70 Score=24.97 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=31.4
Q ss_pred CCCCCcccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCCCC
Q 042083 124 NPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPD 176 (494)
Q Consensus 124 ~~~~CaICLeef~~~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 176 (494)
....|+.|-+.+...+.+.. -+..||..| ..|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 44589999999876666543 567899888 4588998877554
No 156
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.53 E-value=77 Score=23.14 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 042083 50 IIIILAIIFFVSGLLHLLVRFLLRPTNRDPED 81 (494)
Q Consensus 50 IIIIL~iIffV~~LL~llvr~llRr~~r~~e~ 81 (494)
|...++..++++.++.+++.+++|+++.....
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHhhccC
No 157
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.22 E-value=67 Score=24.46 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=28.2
Q ss_pred CCCcccccccCC--CCceeecCCCCCcccHHHHHHHHhcCCCCCcccCCCC
Q 042083 126 FDCAVCLCEFEP--EDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLL 174 (494)
Q Consensus 126 ~~CaICLeef~~--~d~vr~LP~C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 174 (494)
..|+.|-+.+.. +..+... -+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 479999999885 3333222 578899887 45999988875
Done!