Query 042084
Match_columns 1124
No_of_seqs 427 out of 1661
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 9.1E-48 3.1E-52 473.8 50.4 493 289-1080 68-572 (802)
2 1weo_A Cellulose synthase, cat 99.9 7.4E-28 2.5E-32 218.4 7.7 71 122-194 8-88 (93)
3 2z86_A Chondroitin synthase; G 99.3 2.5E-11 8.4E-16 144.7 17.7 68 589-667 150-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.3 3.7E-11 1.3E-15 138.7 17.6 48 367-417 26-73 (472)
5 2d7i_A Polypeptide N-acetylgal 99.2 4.8E-11 1.7E-15 142.1 12.0 48 367-417 109-156 (570)
6 2ffu_A Ppgalnact-2, polypeptid 99.2 5.9E-11 2E-15 138.4 10.6 48 367-417 63-110 (501)
7 1qg8_A Protein (spore coat pol 99.1 7.7E-11 2.6E-15 123.3 7.8 94 604-710 75-170 (255)
8 3bcv_A Putative glycosyltransf 99.1 7.8E-10 2.7E-14 114.4 14.5 58 588-657 61-118 (240)
9 2z86_A Chondroitin synthase; G 98.9 3.4E-09 1.2E-13 126.3 13.5 105 588-710 431-535 (625)
10 4fix_A UDP-galactofuranosyl tr 98.6 3.8E-07 1.3E-11 110.9 14.9 63 588-659 241-303 (657)
11 3ckj_A Putative uncharacterize 98.5 1.2E-06 4.2E-11 97.0 15.7 51 604-661 118-169 (329)
12 3l7i_A Teichoic acid biosynthe 98.4 3.8E-08 1.3E-12 120.3 0.0 51 589-649 60-110 (729)
13 3f1y_A Mannosyl-3-phosphoglyce 97.3 0.00061 2.1E-08 78.0 10.7 50 604-660 166-216 (387)
14 2fy7_A Beta-1,4-galactosyltran 97.3 0.00014 4.7E-09 80.1 4.9 53 824-876 201-263 (287)
15 1e4u_A Transcriptional repress 96.5 0.0044 1.5E-07 55.7 6.4 54 129-186 10-64 (78)
16 2nxv_A ATP synthase subunits r 94.6 0.015 5.1E-07 61.7 3.0 49 605-658 62-112 (249)
17 1fo8_A Alpha-1,3-mannosyl-glyc 88.8 1.9 6.6E-05 48.7 11.2 44 369-417 1-44 (343)
18 2ea6_A Ring finger protein 4; 80.1 1.9 6.3E-05 36.2 4.6 54 129-184 14-68 (69)
19 3ng2_A RNF4, snurf, ring finge 80.0 1.5 5E-05 37.2 3.9 55 129-185 9-64 (71)
20 2d8s_A Cellular modulator of i 79.3 2.1 7E-05 38.6 4.8 53 128-184 13-70 (80)
21 2xeu_A Ring finger protein 4; 78.1 1.1 3.9E-05 36.9 2.6 54 130-185 3-57 (64)
22 2bo4_A Mannosylglycerate synth 76.0 7.4 0.00025 44.7 9.4 52 604-657 75-126 (397)
23 2ect_A Ring finger protein 126 75.6 4.3 0.00015 35.1 5.7 53 129-186 14-66 (78)
24 1g25_A CDK-activating kinase a 75.5 2.7 9.4E-05 35.2 4.3 54 130-186 3-57 (65)
25 2ecm_A Ring finger and CHY zin 71.8 4.6 0.00016 32.4 4.6 51 129-183 4-54 (55)
26 2ep4_A Ring finger protein 24; 69.6 5.4 0.00018 34.1 4.8 50 130-184 15-64 (74)
27 1vyx_A ORF K3, K3RING; zinc-bi 69.5 3.5 0.00012 35.1 3.5 51 127-183 3-58 (60)
28 2kiz_A E3 ubiquitin-protein li 69.4 6.4 0.00022 33.2 5.2 51 129-184 13-63 (69)
29 2c2l_A CHIP, carboxy terminus 68.7 2.8 9.4E-05 44.5 3.4 48 129-184 207-255 (281)
30 2ct2_A Tripartite motif protei 67.2 9.3 0.00032 33.5 6.0 53 130-186 15-70 (88)
31 2ckl_B Ubiquitin ligase protei 66.7 3.5 0.00012 41.1 3.5 47 131-184 55-102 (165)
32 2djb_A Polycomb group ring fin 65.9 7.7 0.00026 33.2 5.1 50 130-186 15-64 (72)
33 2d8t_A Dactylidin, ring finger 65.7 6.1 0.00021 33.7 4.3 49 128-184 13-61 (71)
34 1iym_A EL5; ring-H2 finger, ub 64.7 8.2 0.00028 30.9 4.7 49 129-182 4-53 (55)
35 2ecy_A TNF receptor-associated 64.6 9.5 0.00032 32.0 5.3 48 130-185 15-63 (66)
36 2ysl_A Tripartite motif-contai 64.2 6.4 0.00022 33.4 4.2 49 130-186 20-71 (73)
37 1t1h_A Gspef-atpub14, armadill 64.2 5 0.00017 34.7 3.5 47 130-184 8-55 (78)
38 1wgm_A Ubiquitin conjugation f 63.1 5.4 0.00018 37.0 3.7 47 130-184 22-69 (98)
39 2kr4_A Ubiquitin conjugation f 61.3 5.4 0.00018 35.9 3.3 47 130-184 14-60 (85)
40 2kre_A Ubiquitin conjugation f 61.0 5.3 0.00018 37.2 3.3 47 130-184 29-75 (100)
41 1chc_A Equine herpes virus-1 r 60.2 12 0.00042 31.2 5.2 48 130-184 5-52 (68)
42 2ecv_A Tripartite motif-contai 60.2 11 0.00036 32.6 5.0 47 130-184 19-71 (85)
43 2f42_A STIP1 homology and U-bo 59.7 5.1 0.00017 41.5 3.2 47 130-184 106-153 (179)
44 4ap4_A E3 ubiquitin ligase RNF 58.6 3.3 0.00011 38.9 1.5 55 128-184 70-125 (133)
45 2ecw_A Tripartite motif-contai 56.3 9.8 0.00034 32.9 4.1 48 130-185 19-72 (85)
46 3fl2_A E3 ubiquitin-protein li 55.5 8.1 0.00028 36.6 3.6 46 131-184 53-99 (124)
47 2ea5_A Cell growth regulator w 55.1 14 0.00049 31.8 4.8 47 126-184 11-58 (68)
48 1x4j_A Ring finger protein 38; 54.8 11 0.00037 32.4 4.0 51 129-184 22-72 (75)
49 3vk6_A E3 ubiquitin-protein li 54.4 6.2 0.00021 37.4 2.5 28 157-184 21-49 (101)
50 4ayc_A E3 ubiquitin-protein li 52.4 8.8 0.0003 37.2 3.4 45 132-184 55-99 (138)
51 2y43_A E3 ubiquitin-protein li 51.1 11 0.00037 34.3 3.5 47 131-184 23-69 (99)
52 2csy_A Zinc finger protein 183 50.1 20 0.00068 31.2 5.0 46 130-183 15-60 (81)
53 2l0b_A E3 ubiquitin-protein li 49.9 12 0.0004 33.8 3.6 50 129-183 39-88 (91)
54 1jm7_A BRCA1, breast cancer ty 49.5 16 0.00054 33.5 4.5 47 131-185 22-71 (112)
55 2ckl_A Polycomb group ring fin 48.3 12 0.00041 34.5 3.5 49 130-185 15-63 (108)
56 2ecl_A Ring-box protein 2; RNF 47.3 20 0.00069 31.6 4.6 53 129-183 14-75 (81)
57 3l11_A E3 ubiquitin-protein li 46.9 10 0.00034 35.4 2.7 45 131-183 16-61 (115)
58 1jm7_B BARD1, BRCA1-associated 46.7 18 0.00061 34.0 4.4 45 131-184 23-67 (117)
59 3lrq_A E3 ubiquitin-protein li 46.4 13 0.00044 34.1 3.3 46 131-184 23-70 (100)
60 2egp_A Tripartite motif-contai 44.8 19 0.00066 30.8 4.0 47 130-184 12-65 (79)
61 1v87_A Deltex protein 2; ring- 44.5 20 0.00069 33.1 4.4 53 130-184 25-94 (114)
62 4ap4_A E3 ubiquitin ligase RNF 43.7 14 0.0005 34.4 3.3 56 129-186 6-62 (133)
63 2csz_A Synaptotagmin-like prot 39.9 19 0.00065 32.5 3.2 41 126-170 21-62 (76)
64 1z6u_A NP95-like ring finger p 39.6 17 0.00059 36.0 3.2 47 131-185 79-126 (150)
65 2ecn_A Ring finger protein 141 37.5 16 0.00055 30.8 2.3 48 130-186 15-62 (70)
66 2yur_A Retinoblastoma-binding 36.5 41 0.0014 28.8 4.8 48 130-185 15-65 (74)
67 2y1n_A E3 ubiquitin-protein li 33.4 26 0.00089 40.3 3.8 47 130-184 332-379 (389)
68 3ztg_A E3 ubiquitin-protein li 32.7 24 0.00081 31.3 2.7 47 130-183 13-61 (92)
69 3hct_A TNF receptor-associated 32.3 21 0.00073 33.5 2.4 46 131-184 19-65 (118)
70 1zbd_B Rabphilin-3A; G protein 31.6 21 0.00073 35.2 2.4 37 127-168 52-90 (134)
71 2zet_C Melanophilin; complex, 31.1 8.3 0.00029 38.9 -0.6 46 129-178 67-114 (153)
72 1rmd_A RAG1; V(D)J recombinati 31.1 26 0.0009 32.6 2.8 48 130-185 23-71 (116)
73 2gmg_A Hypothetical protein PF 29.6 19 0.00063 34.4 1.5 25 152-181 68-93 (105)
74 3hcs_A TNF receptor-associated 29.1 28 0.00095 34.6 2.8 46 131-184 19-65 (170)
75 2l43_A N-teminal domain from h 26.5 22 0.00077 32.5 1.4 58 122-183 17-77 (88)
76 3nw0_A Non-structural maintena 26.4 55 0.0019 35.1 4.6 47 130-184 180-229 (238)
77 2bay_A PRE-mRNA splicing facto 25.0 27 0.00093 29.6 1.6 47 131-184 4-50 (61)
78 2vje_A E3 ubiquitin-protein li 24.2 39 0.0013 28.5 2.4 49 129-183 7-56 (64)
79 2zu9_A Mannosyl-3-phosphoglyce 23.7 58 0.002 37.6 4.4 38 604-644 144-181 (394)
80 3vth_A Hydrogenase maturation 23.2 33 0.0011 42.8 2.4 52 130-184 111-195 (761)
81 3dpl_R Ring-box protein 1; ubi 22.7 74 0.0025 29.9 4.2 53 129-183 36-100 (106)
82 2wvl_A Mannosyl-3-phosphoglyce 22.6 76 0.0026 36.5 5.0 42 603-647 142-183 (391)
83 1d4u_A Nucleotide excision rep 22.3 28 0.00097 33.4 1.3 29 155-183 2-37 (111)
84 3q80_A 2-C-methyl-D-erythritol 22.1 86 0.0029 32.9 5.1 28 622-649 100-127 (231)
85 2vje_B MDM4 protein; proto-onc 21.9 47 0.0016 27.9 2.4 48 130-183 7-55 (63)
86 2ku3_A Bromodomain-containing 21.7 37 0.0013 29.9 1.8 55 122-180 8-65 (71)
87 2gvi_A Conserved hypothetical 21.2 23 0.00078 37.1 0.4 27 130-167 172-202 (204)
88 2ysj_A Tripartite motif-contai 20.8 75 0.0026 26.0 3.5 41 130-178 20-63 (63)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=9.1e-48 Score=473.75 Aligned_cols=493 Identities=22% Similarity=0.341 Sum_probs=378.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-CCc----hhHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhHHhhhcCCCCCCCC
Q 042084 289 LFIAIRFVILGFFLHWRVVNP-NTD----AIWLWLMSVSCEIWFAFSWILDQFPKLFPVNRSTDLEVLRDKFDMPSPSNP 363 (1124)
Q Consensus 289 ~~~~~~lv~l~~~l~~Ri~~~-~~~----a~~lw~~~~~~E~wf~f~wlL~q~~kw~Pi~R~t~~~~L~~r~~~~~~~~~ 363 (1124)
+++++.+++.+.|++||++.+ +.. ..++|++++++|+++.+.|++.++..|+|..|...++.
T Consensus 68 ~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~------------- 134 (802)
T 4hg6_A 68 LLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL------------- 134 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-------------
Confidence 355566667788999999876 322 45788999999999999999999999999988754321
Q ss_pred CCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHccCCCCCCcEEEEeCCCCchhhHHHHHHHHhhhhhhhhhhhhhcCC
Q 042084 364 TGRSDLPGIDMYVSTADPEKEPPLTTANTILSILAVDYPVEKLACYVSDDGGALLTFEAMAEAASFADLWVPFCRKHNIE 443 (1124)
Q Consensus 364 ~~~~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~kl~~YvsDDG~s~lTf~aL~Eaa~FA~~WvPFCrk~~Ie 443 (1124)
.++++|.|+|+|+|+ +|++.++.+|+.|++++|||.+++.|+|.|||.+.-|.+.
T Consensus 135 -~~~~~P~VSViIPty---Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~--------------------- 189 (802)
T 4hg6_A 135 -QPEELPTVDILVPSY---NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS--------------------- 189 (802)
T ss_dssp -CTTTCCCEEEEEECT---TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC---------------------
T ss_pred -CccCCCcEEEEEEEC---CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc---------------------
Confidence 146799999999999 8999999999999999999999999999999998744321
Q ss_pred CCCCcccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhcCcccccccccccchHHHHHHHHhhhcCCCCCCCcccc
Q 042084 444 PRNPDSYFSLKIDPTKNKSRTDFVKDRRKIKREYDEFKVRINGLPDSIRRRSDAFNAREEMKMIKHMREGGADPTEPIKV 523 (1124)
Q Consensus 444 pR~Pe~YFs~~~~~~~~~~~~~f~~er~~~KreYee~k~rI~~l~~~~~~~~~~~n~~ee~~~~~~~~~~~~~~~~~~~~ 523 (1124)
.+|+.+++.. +.+++++ .+. +
T Consensus 190 ------------------~d~~i~~~~~---~~~~~l~----~~~-------------~--------------------- 210 (802)
T 4hg6_A 190 ------------------PDPELAQKAQ---ERRRELQ----QLC-------------R--------------------- 210 (802)
T ss_dssp ------------------SSHHHHHHHH---HHHHHHH----HHH-------------H---------------------
T ss_pred ------------------CCHHHHHHHH---hhhHHHH----HHH-------------H---------------------
Confidence 1122222211 1111111 110 0
Q ss_pred cccccccCCCCCCCCcccCCCCCCcCCCccceEEEecCCCCCCCCCCCCCcccccccccccCCCcEEEEEccCCCCCCCC
Q 042084 524 QKATWMADGTHWPGTWTVPTSEHAKGDHSGILQVMLKPPSPDPLMGSADDDKLIDFTDVDIRLPLFVYMSREKRPGYEHN 603 (1124)
Q Consensus 524 p~~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqV~l~~~~~~~~~g~~~~~~~~d~~~~~~~lP~LvYVSREKrpg~~H~ 603 (1124)
+. .+.|+.|+++ ++
T Consensus 211 -------------------------------------------------------------~~-~v~~i~~~~~----~~ 224 (802)
T 4hg6_A 211 -------------------------------------------------------------EL-GVVYSTRERN----EH 224 (802)
T ss_dssp -------------------------------------------------------------HH-TCEEEECSSC----CS
T ss_pred -------------------------------------------------------------hc-CcEEEEecCC----CC
Confidence 01 1677888875 45
Q ss_pred CchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhccCCCcEEEEccCccccCCCcc-------hhhHHH
Q 042084 604 KKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDKGGEDICYIQFPQRFEGIDPS-------DRYANN 676 (1124)
Q Consensus 604 ~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp~g~~vafVQfPQ~F~nid~~-------D~yan~ 676 (1124)
+||||+|.+++. ++++||+.+|||+++ +|++|++.+.+|.+ ++++++||+|+.+.|.++. .++.++
T Consensus 225 GKa~alN~gl~~----a~gd~Il~lDaD~~~-~pd~L~~lv~~~~~--dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (802)
T 4hg6_A 225 AKAGNMSAALER----LKGELVVVFDADHVP-SRDFLARTVGYFVE--DPDLFLVQTPHFFINPDPIQRNLALGDRCPPE 297 (802)
T ss_dssp HHHHHHHHHHHH----CCCSEEEECCTTEEE-CTTHHHHHHHHHHH--SSSCCEEECCCCBSSCCHHHHHHTCCTTSCCT
T ss_pred cchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHHhc--CCCeEEEeccEEEeCCchHhhhhhHHhhhhHH
Confidence 899999999997 589999999999999 69999999999963 2489999999999987642 233456
Q ss_pred HHHHHhhHHHHhhhcCCcccccccceeehhhhcCCCCCCCCCCCCCCccccccCCCCCCCccccccccccccCCcchhhc
Q 042084 677 NTVFFDGNMRALDGLQGPFYVGTGTMFRRFALYGFDPPDPNKNPQNKDTEMHALNPTDFDSDLDVNLLPKRFGNSTMLAE 756 (1124)
Q Consensus 677 ~~vFfdv~~~glDGlqGp~yvGTGcvfRR~ALyg~~pp~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~s~~f~~ 756 (1124)
+..||....++.+.+++++++|+++++||+++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~---------------------------------------------- 331 (802)
T 4hg6_A 298 NEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDE---------------------------------------------- 331 (802)
T ss_dssp THHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHhhHhhcCCceecccchhhhHHHHHH----------------------------------------------
Confidence 7889999999999999999999999999999964
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccccccccccccccccccCcccchHHHHHHHHhC
Q 042084 757 SIPIAEFQGRPLADHPSVSYGRPPGALRAPRDPLDAATVAEAVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNR 836 (1124)
Q Consensus 757 s~~~~e~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~eA~~v~sC~YE~~T~WG~evGw~ygSVTEDi~TglrLh~r 836 (1124)
+| ||...+++||.+++++++.+
T Consensus 332 ------vG----------------------------------------------------gf~~~~~~ED~~l~~rl~~~ 353 (802)
T 4hg6_A 332 ------AG----------------------------------------------------GFAGETITEDAETALEIHSR 353 (802)
T ss_dssp ------HT----------------------------------------------------TCCCSSSSHHHHHHHHHHTT
T ss_pred ------cC----------------------------------------------------CcCCCCcchHHHHHHHHHHc
Confidence 22 66677889999999999999
Q ss_pred CceEEEeccCCccccccCCCCHHHHHHHhhhhhcchhHHHhhhccccccccccchhcchhhhhchhhhhhHHHHHHHHHH
Q 042084 837 GWHSVYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASRKLKLLQRLAYLNVGIYPFTSLFLIVYCFL 916 (1124)
Q Consensus 837 GWrSvY~~P~r~af~G~aP~tL~a~l~QR~RWA~G~lQIl~sk~~pLl~~~~L~l~QRL~Yl~~~lypl~sl~~Liylll 916 (1124)
||+++|++ .+.+++++|+|+.++++||.||++|.+|+++. ++|++ .+++++.||+.|+...++++.+++.++++++
T Consensus 354 G~ri~~~~--~~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~pl~-~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~ 429 (802)
T 4hg6_A 354 GWKSLYID--RAMIAGLQPETFASFIQQRGRWATGMMQMLLL-KNPLF-RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVA 429 (802)
T ss_dssp TCCEEECC--CCCEEECCCCSHHHHHHHHHHHHHHHHHHHHH-SCTTS-CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCeEEEec--CCEEEecCCCCHHHHHHHHHHHHccHHHHHHH-hCccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999984 35678999999999999999999999999985 46665 6889999999999999999999999999999
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhchhhHHHhhhhHHHHHHHHHHHHHHHhcccc
Q 042084 917 PALSLISGHFIVKNLNITFLVYLLIQSLCLIGLAILEVKWSGIGLEEWWRNEQFWVIGGTSAHFAAVIQGLLKVMAGIEI 996 (1124)
Q Consensus 917 P~l~LltGi~~ip~~s~~fliyllp~~ls~~l~~lLe~rwsGvsl~~wWr~qr~W~I~~tsa~l~Av~~aLLk~Lgg~k~ 996 (1124)
|+++++++..++......++.+++|+++...+... ..+ |.....|| ++.++.+... ..+.+++.++ +.+++.
T Consensus 430 p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~--~~~-~~~r~~~~-~~l~~~~~~~-~~~~a~l~~l---~~~~~~ 501 (802)
T 4hg6_A 430 PLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQN--ALF-ARQRWPLV-SEVYEVAQAP-YLARAIVTTL---LRPRSA 501 (802)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHH--HHH-TTTSCTTH-HHHHHHHHHH-HHHHHHHHHH---HSTTCC
T ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHH--HHh-cCcHHHHH-HHHHHHHHHH-HHHHHHHHHH---hCCCCC
Confidence 99999999999888777777777777654443321 112 21111233 3444433111 1233444333 446788
Q ss_pred ceEeCcCCCCCCCcccccceEEeecccchHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 042084 997 SFTLTTKSAAEDNDDIYADLYVVKWTSLMIPPIVIAMVNIVAMVIAFLRTIYATNPSWSKFIGGAFFSFWVLAHLYPFAK 1076 (1124)
Q Consensus 997 sF~VTpK~~~~d~~~~yael~~f~ws~LliP~~tLllLnLvAiv~Gv~r~i~~~~~~w~~l~g~l~~~fWvl~nL~Pf~k 1076 (1124)
+|.||+|+...+. .+ + + .++.|.+++++++++++++|+++...... ...+.+++++|+++|++.+.-
T Consensus 502 ~f~VT~Kg~~~~~--~~-----~-~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~ 568 (802)
T 4hg6_A 502 RFAVTAKDETLSE--NY-----I-S-PIYRPLLFTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGF 568 (802)
T ss_dssp CCCCCCCCCCCSS--CC-----B-C-TTCHHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHH
T ss_pred cceECCCCccccc--cc-----h-h-hHHHHHHHHHHHHHHHHHHHHHHHhccCC----ccchhhhhhHHHHHHHHHHHH
Confidence 9999999875432 12 1 2 56789999999999999999998775432 234567899999999999999
Q ss_pred HHhc
Q 042084 1077 GLMG 1080 (1124)
Q Consensus 1077 gL~g 1080 (1124)
++..
T Consensus 569 ~~~~ 572 (802)
T 4hg6_A 569 ALRA 572 (802)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8853
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=99.94 E-value=7.4e-28 Score=218.44 Aligned_cols=71 Identities=32% Similarity=0.707 Sum_probs=66.0
Q ss_pred CCCcCCCCCCccccccCCCcccccCCCCccccc-ccCCccchhhhhhhhhcC-CCCCCCCCCCcC--------CCCCCCC
Q 042084 122 HPQMAGAKGSSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDAQKDT-GLCPGCKEPYKL--------GDYDDEI 191 (1124)
Q Consensus 122 ~~~~~~~~g~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r--------~d~~~~~ 191 (1124)
+++|+.+++|+||| |||+||++++|++|||| ||+|||||+||||||||| |+|||||++||| ||+||++
T Consensus 8 ~kp~~~~~~qiCqi--CGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d 85 (93)
T 1weo_A 8 PKPLKNLDGQFCEI--CGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEED 85 (93)
T ss_dssp SSCCSCCSSCBCSS--SCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCC
T ss_pred CCcccccCCCcccc--ccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccc
Confidence 67899999999999 99999999999999999 999999999999999999 999999999996 6766666
Q ss_pred CCC
Q 042084 192 PDF 194 (1124)
Q Consensus 192 ~~~ 194 (1124)
.||
T Consensus 86 ~dD 88 (93)
T 1weo_A 86 IDS 88 (93)
T ss_dssp SCC
T ss_pred ccc
Confidence 665
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.30 E-value=2.5e-11 Score=144.71 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=54.5
Q ss_pred EEEEEccCCCCCCCCCchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhccCCCcEEEEccCccccCC
Q 042084 589 FVYMSREKRPGYEHNKKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDKGGEDICYIQFPQRFEGI 667 (1124)
Q Consensus 589 LvYVSREKrpg~~H~~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp~g~~vafVQfPQ~F~ni 667 (1124)
+.|+.++++ .+.||+|+|.+++. +.++||+++|+|+++ .|++|.+++.+|.. ++.++.|+..+.+.+.
T Consensus 150 i~~i~~~~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~--~~~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 150 IKYVRQKDY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAP-NPLWVQSYMELLAV--DDNVALIGPRKYIDTS 217 (625)
T ss_dssp EEEEEECCC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEE-CTTHHHHHHHHHHH--CTTEEEECCEEEECCT
T ss_pred eEEEEeCCC----CcchhHHHHHHHHh----CCcCEEEEECCCCCC-CHHHHHHHHHHHhc--CCceEEEEeeeeccCc
Confidence 777776543 23699999999987 489999999999999 69999999999985 2478888877666543
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.29 E-value=3.7e-11 Score=138.65 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHHccCCCCCCcEEEEeCCCCch
Q 042084 367 SDLPGIDMYVSTADPEKEPPLTTANTILSILAVDYPVEKLACYVSDDGGAL 417 (1124)
Q Consensus 367 ~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~kl~~YvsDDG~s~ 417 (1124)
+++|.|.|+|+|+ +|+...+..||-|+++.+||.....|+|.|||...
T Consensus 26 ~~~p~vSVIIp~y---N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d 73 (472)
T 1xhb_A 26 DNLPTTSVVIVFH---NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASER 73 (472)
T ss_dssp SCCCCEEEEEEES---SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCC
T ss_pred cCCCCeEEEEEeC---CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCc
Confidence 5799999999999 88878999999999999999766799999999854
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.18 E-value=4.8e-11 Score=142.12 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=42.8
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHHccCCCCCCcEEEEeCCCCch
Q 042084 367 SDLPGIDMYVSTADPEKEPPLTTANTILSILAVDYPVEKLACYVSDDGGAL 417 (1124)
Q Consensus 367 ~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~kl~~YvsDDG~s~ 417 (1124)
+++|.|.|+|+|+ +|+...+..||-|+++..||.....|+|.|||...
T Consensus 109 ~~~P~vSVIIp~y---Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D 156 (570)
T 2d7i_A 109 ETLPNTSIIIPFH---NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR 156 (570)
T ss_dssp SSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCC
T ss_pred CCCCCeEEEEEEC---CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCc
Confidence 5689999999999 78778999999999999999656689999999865
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.15 E-value=5.9e-11 Score=138.40 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHHccCCCCCCcEEEEeCCCCch
Q 042084 367 SDLPGIDMYVSTADPEKEPPLTTANTILSILAVDYPVEKLACYVSDDGGAL 417 (1124)
Q Consensus 367 ~~lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~kl~~YvsDDG~s~ 417 (1124)
.++|.|.|+|+|+ +|+...+..||-|+++..||.....|+|.|||...
T Consensus 63 ~~~p~vSVIIp~y---N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D 110 (501)
T 2ffu_A 63 VDLPATSVVITFH---NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSND 110 (501)
T ss_dssp SSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSC
T ss_pred cCCCCEEEEEEeC---cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCc
Confidence 5799999999999 88866899999999999999666799999999855
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.11 E-value=7.7e-11 Score=123.28 Aligned_cols=94 Identities=10% Similarity=-0.049 Sum_probs=62.4
Q ss_pred CchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhccCCCcEEEEccCcccc--CCCcchhhHHHHHHHH
Q 042084 604 KKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDKGGEDICYIQFPQRFE--GIDPSDRYANNNTVFF 681 (1124)
Q Consensus 604 ~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp~g~~vafVQfPQ~F~--nid~~D~yan~~~vFf 681 (1124)
.+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..|.. .+++++|.+...+. +.+..... .. +
T Consensus 75 G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~-~~----~ 142 (255)
T 1qg8_A 75 RYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDT--HPEKAVIYSASKTYHLNENRDIVK-ET----V 142 (255)
T ss_dssp HHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHH--CTTCCEEEEEEEEEEEC---CEEE-EE----E
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHh--CCCceEEEeceEEEEeCCCCcchh-hc----c
Confidence 599999999986 589999999999999 69999999999885 24777787766654 32211000 00 0
Q ss_pred hhHHHHhhhcCCcccccccceeehhhhcC
Q 042084 682 DGNMRALDGLQGPFYVGTGTMFRRFALYG 710 (1124)
Q Consensus 682 dv~~~glDGlqGp~yvGTGcvfRR~ALyg 710 (1124)
.. .............|++.++||+++..
T Consensus 143 ~~-~~~~~~~~~~~~~~~~~~~rr~~~~~ 170 (255)
T 1qg8_A 143 RP-AAQVTWNAPCAIDHCSVMHRYSVLEK 170 (255)
T ss_dssp EC-CCSCBSCCTTTSCGGGEEEETHHHHH
T ss_pred Cc-hHHHHHhhcCCCccceEEEEHHHHHh
Confidence 00 00011133445678889999999853
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.09 E-value=7.8e-10 Score=114.39 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=45.5
Q ss_pred cEEEEEccCCCCCCCCCchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhccCCCcEEE
Q 042084 588 LFVYMSREKRPGYEHNKKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDKGGEDICY 657 (1124)
Q Consensus 588 ~LvYVSREKrpg~~H~~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp~g~~vaf 657 (1124)
++.|+.. ++. .+++|.|.+++. ++|+||+.+|+|.++ .|++|.+.+..+.++ +.++++
T Consensus 61 ~i~~i~~-~n~-----G~~~a~N~g~~~----a~g~~i~~lD~Dd~~-~~~~l~~l~~~~~~~-~~~~v~ 118 (240)
T 3bcv_A 61 NIKVIHK-KNA-----GLGMACNSGLDV----ATGEYVAFCDSDDYV-DSDMYMTMYNVAQKY-TCDAVF 118 (240)
T ss_dssp SEEEEEC-CCC-----CHHHHHHHHHHH----CCSSEEEECCTTCCC-CTTHHHHHHHHHHHH-TCSEEE
T ss_pred CEEEEEC-CCC-----ChHHHHHHHHHH----cCCCEEEEECCCCcC-CHHHHHHHHHHHHhc-CCCEEE
Confidence 3666653 333 599999999987 589999999999999 699999999999864 334443
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.94 E-value=3.4e-09 Score=126.35 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=69.7
Q ss_pred cEEEEEccCCCCCCCCCchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhccCCCcEEEEccCccccCC
Q 042084 588 LFVYMSREKRPGYEHNKKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDKGGEDICYIQFPQRFEGI 667 (1124)
Q Consensus 588 ~LvYVSREKrpg~~H~~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp~g~~vafVQfPQ~F~ni 667 (1124)
++.++. +++. .+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..|.. +++++.|.....+.+.
T Consensus 431 ~i~~~~-~~n~-----G~~~a~n~g~~~----a~g~~i~~ld~D~~~-~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~ 497 (625)
T 2z86_A 431 RVRFIS-QKNK-----GIGSASNTAVRL----CRGFYIGQLDSDDFL-EPDAVELCLDEFRK--DLSLACVYTTNRNIDR 497 (625)
T ss_dssp TEEEEE-ECCC-----CHHHHHHHHHHH----CCSSEEEECCTTCEE-CTTHHHHHHHHHHH--CTTCSEEEEEEEEECT
T ss_pred cEEEEe-CCCC-----CHHHHHHHHHHh----cCCCEEEEECCCccc-ChhHHHHHHHHHHh--CCCeeEEEeeeEEECC
Confidence 366665 4433 599999999987 589999999999999 79999999988864 2477888776665443
Q ss_pred CcchhhHHHHHHHHhhHHHHhhhcCCcccccccceeehhhhcC
Q 042084 668 DPSDRYANNNTVFFDGNMRALDGLQGPFYVGTGTMFRRFALYG 710 (1124)
Q Consensus 668 d~~D~yan~~~vFfdv~~~glDGlqGp~yvGTGcvfRR~ALyg 710 (1124)
+..-.........+ ..+.+...+++|.+.++||+++..
T Consensus 498 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~r~~~~~ 535 (625)
T 2z86_A 498 EGNLISNGYNWPIY-----SREKLTSAMICHHFRMFTARAWNL 535 (625)
T ss_dssp TSCEEEECCCCSSC-----CHHHHTTSCCCCSCEEEEHHHHTT
T ss_pred CCCEeccCcccccC-----CHHHHhhcccCCceEEEEHHHHHH
Confidence 32211000000000 112234556788899999998853
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.56 E-value=3.8e-07 Score=110.91 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=47.3
Q ss_pred cEEEEEccCCCCCCCCCchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhccCCCcEEEEc
Q 042084 588 LFVYMSREKRPGYEHNKKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDKGGEDICYIQ 659 (1124)
Q Consensus 588 ~LvYVSREKrpg~~H~~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp~g~~vafVQ 659 (1124)
++.||..+ +. ..|||.|.+++.+.-.++++||+.+|.|.++ .|++|.+.+.+|... ++++.|+
T Consensus 241 ~I~vI~~~-N~-----G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~-~pd~L~~ll~~l~~~--~~~~~vg 303 (657)
T 4fix_A 241 RLSIHDQP-NL-----GGSGGYSRVMYEALKNTDCQQILFMDDDIRL-EPDSILRVLAMHRFA--KAPMLVG 303 (657)
T ss_dssp GEEEEECC-CC-----HHHHHHHHHHHHHHHHCCCSEEEEECSSEEE-CTHHHHHHHHHHHHB--SSCCEEE
T ss_pred CEEEEECC-CC-----CHHHHHHHHHHHHHhcCCCCEEEEECCCCcc-ChhHHHHHHHHHHhC--CCcEEEE
Confidence 37777654 43 4899999988764222378999999999999 699999999999753 3455554
No 11
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.50 E-value=1.2e-06 Score=96.98 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=42.5
Q ss_pred CchhHHHHHHHhccccCCCCEEEeecCCCc-cCchHHHHHHHHHHhccCCCcEEEEccC
Q 042084 604 KKAGAMNALVRASAILSNGPFILNLDCDHY-IYNCKAIREGMCFMMDKGGEDICYIQFP 661 (1124)
Q Consensus 604 ~KAGALNallRvSavlsngpfIlnlDcD~y-~nnp~~Lr~amcff~Dp~g~~vafVQfP 661 (1124)
.|++|+|.+++. ++|+||+.+|+|.+ + .|++|.+.+..|.. .+++++|+..
T Consensus 118 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~-~p~~l~~l~~~l~~--~~~~~~v~g~ 169 (329)
T 3ckj_A 118 GKGEALWRSLAA----SRGDIVVFVDSDLINP-HPMFVPWLVGPLLT--GDGVHLVKSF 169 (329)
T ss_dssp SHHHHHHHHHHH----CCCSEEEECCTTEESC-CTTHHHHHHHHHHS--CSSCCEEEEE
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCCc-ChHHHHHHHHHHHh--CCCccEEEEE
Confidence 599999999986 58999999999999 6 69999999998764 2367777664
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.39 E-value=3.8e-08 Score=120.27 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred EEEEEccCCCCCCCCCchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhc
Q 042084 589 FVYMSREKRPGYEHNKKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMD 649 (1124)
Q Consensus 589 LvYVSREKrpg~~H~~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~D 649 (1124)
+.|+..+++.| +++|.|.+++. ++|+||+.+|+|.++ .|++|.+.+..|.+
T Consensus 60 i~~i~~~~n~G-----~~~arN~gi~~----A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~ 110 (729)
T 3l7i_A 60 IRFIDLDENSG-----HAHARNIALEE----VETPYFMFLDADDEL-ASYAITFYLEKFNN 110 (729)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEECCCCCC-----HHHHHHHHHHh----ccCCEEEEECCCCCC-ChhHHHHHHHHhcC
Confidence 66666665444 89999999986 489999999999999 69999999999874
No 13
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.33 E-value=0.00061 Score=77.96 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=41.1
Q ss_pred CchhHHHHHHHhccccCCCCEEEeecCCCc-cCchHHHHHHHHHHhccCCCcEEEEcc
Q 042084 604 KKAGAMNALVRASAILSNGPFILNLDCDHY-IYNCKAIREGMCFMMDKGGEDICYIQF 660 (1124)
Q Consensus 604 ~KAGALNallRvSavlsngpfIlnlDcD~y-~nnp~~Lr~amcff~Dp~g~~vafVQf 660 (1124)
.|++|+|.+++. ..|+||+.+|+|.. + +|++|.+.+..+.+ ++++.+|..
T Consensus 166 G~g~A~n~G~~~----A~gd~i~~lDaD~~~~-~p~~L~~l~~~l~~--~p~~d~v~G 216 (387)
T 3f1y_A 166 GKGDAMWRALSV----TRGDLVLYIDADTRDF-RPQLAYGVLGPVLE--VPGVRFVKA 216 (387)
T ss_dssp SHHHHHHHHTTT----CCSSEEEECCTTCSSC-CTHHHHTTHHHHHH--STTCCEEEE
T ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCcC-CHHHHHHHHHHHHH--CCCceEEEE
Confidence 499999999986 47999999999999 6 79999999988864 235555554
No 14
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=97.31 E-value=0.00014 Score=80.12 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=39.6
Q ss_pred cchHHHHHHHHhCCceEEEeccCCccc----------cccCCCCHHHHHHHhhhhhcchhHHH
Q 042084 824 TEDVVTGYRMHNRGWHSVYCVTKRDAF----------RGSAPINLTDRLHQVLRWATGSVEIF 876 (1124)
Q Consensus 824 TEDi~TglrLh~rGWrSvY~~P~r~af----------~G~aP~tL~a~l~QR~RWA~G~lQIl 876 (1124)
.||++..+||+.+||+..+..+....+ ....|+.+..+.+||.||+.+.+..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999887432100111 23478999999999999999998765
No 15
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.47 E-value=0.0044 Score=55.74 Aligned_cols=54 Identities=31% Similarity=0.876 Sum_probs=43.9
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcCCC
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKLGD 186 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r~d 186 (1124)
....|.| |-+.+.. +.-.|.||.|+..+|+.|+..-.+++ ..||.|+.+|...+
T Consensus 10 ~~~~CpI--Cle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPL--CMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTT--TCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCc--cCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3468999 9886633 34468999999999999998877667 99999999998644
No 16
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=94.56 E-value=0.015 Score=61.68 Aligned_cols=49 Identities=4% Similarity=-0.015 Sum_probs=39.8
Q ss_pred chhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhcc--CCCcEEEE
Q 042084 605 KAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDK--GGEDICYI 658 (1124)
Q Consensus 605 KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp--~g~~vafV 658 (1124)
.|.|+|.+++. +.|+||+.||.|.++ ++++|.+.+.+|... .+++++.|
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~~vg~v 112 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADPKWLVA 112 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCCCeeEE
Confidence 48999999986 479999999999999 799999999988740 01367665
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=88.78 E-value=1.9 Score=48.67 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=36.7
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHHccCCCCCCcEEEEeCCCCch
Q 042084 369 LPGIDMYVSTADPEKEPPLTTANTILSILAVDYPVEKLACYVSDDGGAL 417 (1124)
Q Consensus 369 lP~VDvfV~T~DP~~EPp~~~~nTvlS~la~DYP~~kl~~YvsDDG~s~ 417 (1124)
|+-+-|.|.|+ +-| . +..++-|++++.++.++.-++|+|||...
T Consensus 1 ~~~~pViI~~y---NRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIAC---DRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEES---SCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEEC---CcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 34567889999 777 5 99999999999988888889999999743
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.14 E-value=1.9 Score=36.20 Aligned_cols=54 Identities=26% Similarity=0.597 Sum_probs=39.4
Q ss_pred CCCccccccCCCcccccC-CCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 129 KGSSCGMPACDGKAMKDE-RGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~-~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
....|.| |-+...... .++.++.-.|+-..|+.|.+.-.+....||-|+.++.+
T Consensus 14 ~~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTT--TCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcc--cCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4568999 877653322 34544555889999999997766666899999998753
No 19
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=80.05 E-value=1.5 Score=37.21 Aligned_cols=55 Identities=25% Similarity=0.601 Sum_probs=41.2
Q ss_pred CCCccccccCCCccccc-CCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcCC
Q 042084 129 KGSSCGMPACDGKAMKD-ERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKLG 185 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~-~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r~ 185 (1124)
....|.| |-+..... ++++..+.-.|+-..|+.|...-.+....||-|+.++...
T Consensus 9 ~~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTT--TCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcc--cChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4568999 87765432 2455555558999999999977666668999999998753
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.33 E-value=2.1 Score=38.56 Aligned_cols=53 Identities=23% Similarity=0.577 Sum_probs=39.1
Q ss_pred CCCCccccccCCCcccccCCCCcccccccC---Cccchhhhhhhhhc-C-CCCCCCCCCCcC
Q 042084 128 AKGSSCGMPACDGKAMKDERGNDIIPCECR---FKICRDCYMDAQKD-T-GLCPGCKEPYKL 184 (1124)
Q Consensus 128 ~~g~~C~i~~C~~~v~~~~~G~~f~~CeC~---f~iCr~Cy~~~~~~-g-~~Cp~Ck~~y~r 184 (1124)
.....|.| |-++. ++++....||.|. --+.+.|.+.=.+. + ..||-||.+|..
T Consensus 13 ~~~~~C~I--C~~~~--~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRI--CHCEG--DDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSS--SCCCC--CSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeE--cCccc--cCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34568999 75543 2344568899885 78999999766554 3 699999999974
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=78.06 E-value=1.1 Score=36.94 Aligned_cols=54 Identities=26% Similarity=0.582 Sum_probs=39.7
Q ss_pred CCccccccCCCcccccC-CCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcCC
Q 042084 130 GSSCGMPACDGKAMKDE-RGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKLG 185 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~-~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r~ 185 (1124)
...|.| |-+...... .++..+.-.|+-..|+.|.+.-.+....||-|+.++...
T Consensus 3 ~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTT--TCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCc--cChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 458999 876653322 345445558999999999977666668999999998753
No 22
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=76.01 E-value=7.4 Score=44.69 Aligned_cols=52 Identities=17% Similarity=-0.015 Sum_probs=37.5
Q ss_pred CchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHHhccCCCcEEE
Q 042084 604 KKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFMMDKGGEDICY 657 (1124)
Q Consensus 604 ~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff~Dp~g~~vaf 657 (1124)
+|++||+++++..-...+|++|+.+|||..-.+|+.+.+.+..+.+ |-++.+
T Consensus 75 GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~--g~D~V~ 126 (397)
T 2bo4_A 75 GKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF--GYGLVR 126 (397)
T ss_dssp SHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT--TCSEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHc--CCCEEE
Confidence 5999999999321002589999999999963369999988876643 445443
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=75.62 E-value=4.3 Score=35.12 Aligned_cols=53 Identities=17% Similarity=0.465 Sum_probs=37.3
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcCCC
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKLGD 186 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r~d 186 (1124)
....|.| |-+.... ++..+.-.|+-..|+.|...-.+....||-|+.++...+
T Consensus 14 ~~~~C~I--C~~~~~~---~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 14 SGLECPV--CKEDYAL---GESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSCCCTT--TTSCCCT---TSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCee--CCccccC---CCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 4568999 8666422 333332357888999999766655589999999987533
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.51 E-value=2.7 Score=35.24 Aligned_cols=54 Identities=19% Similarity=0.532 Sum_probs=36.6
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcCCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKLGD 186 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r~d 186 (1124)
...|.| |-++...+.. ..++.=.|+--.|+.|.+.-...+ ..||.|+.++...+
T Consensus 3 ~~~C~I--C~~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPR--CKTTKYRNPS-LKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCST--TTTHHHHCSS-CCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCc--CCCCccCCCc-cCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 457999 8653322211 112333788889999997775666 88999999998644
No 25
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=71.84 E-value=4.6 Score=32.40 Aligned_cols=51 Identities=24% Similarity=0.453 Sum_probs=36.1
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCc
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYK 183 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~ 183 (1124)
....|.| |-+.+... ++..+.=.|+-..|+.|...-.+....||-|+.++.
T Consensus 4 ~~~~C~I--C~~~~~~~--~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPI--CLEDIHTS--RVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTT--TCCCCCTT--TSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcc--cChhhcCC--CcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999 87665321 222332268889999999877776799999998753
No 26
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.58 E-value=5.4 Score=34.15 Aligned_cols=50 Identities=20% Similarity=0.523 Sum_probs=36.8
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
...|.| |-+.+.. ++..+...|+-..|+.|...-.+....||-|+.++..
T Consensus 15 ~~~C~I--C~~~~~~---~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAV--CLEDFKP---RDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSS--SCCBCCS---SSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCcC--CCcccCC---CCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 568999 8766432 3444434688889999997666666899999998864
No 27
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=69.54 E-value=3.5 Score=35.09 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=37.0
Q ss_pred CCCCCccccccCCCcccccCCCCcccccccCC---ccchhhhhhhhhc-C-CCCCCCCCCCc
Q 042084 127 GAKGSSCGMPACDGKAMKDERGNDIIPCECRF---KICRDCYMDAQKD-T-GLCPGCKEPYK 183 (1124)
Q Consensus 127 ~~~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f---~iCr~Cy~~~~~~-g-~~Cp~Ck~~y~ 183 (1124)
...+..|.| |-++ ++++.+.||.|.= .+=+.|.+-=.+. + ..||-||.+|.
T Consensus 3 ~~~~~~CrI--C~~~----~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWI--CNEE----LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETT--TTEE----CSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEE--eecC----CCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345678999 7544 2345689998865 5667888766654 4 89999999996
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=69.36 E-value=6.4 Score=33.19 Aligned_cols=51 Identities=18% Similarity=0.362 Sum_probs=37.0
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
....|.| |-+.+. +++..+.-.|+-..|+.|...-.+....||-|+.+...
T Consensus 13 ~~~~C~I--C~~~~~---~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTI--CLSILE---EGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTT--TTBCCC---SSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCee--CCcccc---CCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4568999 866553 23444434678888999997666666789999998764
No 29
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=68.72 E-value=2.8 Score=44.49 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=35.2
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
.--.|.| |. ++|.| +.+. .||.-.||.|-+.-.+.+ ..||-|+++...
T Consensus 207 ~~~~c~i--~~-~~~~d----Pv~~-~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKI--SF-ELMRE----PCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTT--TC-SBCSS----EEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcC--cC-CHhcC----CeEC-CCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4558999 74 34543 3221 589999999998887776 569999998863
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.18 E-value=9.3 Score=33.47 Aligned_cols=53 Identities=19% Similarity=0.414 Sum_probs=36.7
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC---CCCCCCCCCCcCCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT---GLCPGCKEPYKLGD 186 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g---~~Cp~Ck~~y~r~d 186 (1124)
...|.| |-+....+ ....+.-.|+-..|+.|...-.+.. ..||-|+.+++..+
T Consensus 15 ~~~C~I--C~~~~~~~--~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPI--CMESFTEE--QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTT--TCCBCCTT--SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCcc--CCcccccc--CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 568999 86554321 1112223789999999998765543 89999999987643
No 31
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=66.72 E-value=3.5 Score=41.09 Aligned_cols=47 Identities=28% Similarity=0.663 Sum_probs=35.7
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
-.|.| |-+.. . ++.+...|+--.|+.|.+.-.+.+ ..||-|+.++..
T Consensus 55 ~~C~I--C~~~~-~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPI--CLDML-K----NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTT--TSSBC-S----SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcc--cChHh-h----CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999 85543 2 233333899999999998888886 999999999853
No 32
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.95 E-value=7.7 Score=33.18 Aligned_cols=50 Identities=20% Similarity=0.487 Sum_probs=35.6
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcCCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKLGD 186 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r~d 186 (1124)
...|.| |-+.. . +..+.-.|+-..|+.|...-.+....||-|+.+++..+
T Consensus 15 ~~~C~I--C~~~~-~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSI--CKGYL-I----DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGSCTT--TSSCC-S----SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCC--CChHH-H----CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 458999 85442 1 12222267777899999877766789999999998644
No 33
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.71 E-value=6.1 Score=33.75 Aligned_cols=49 Identities=16% Similarity=0.347 Sum_probs=35.1
Q ss_pred CCCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 128 AKGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 128 ~~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
.....|.| |-+.. .+ -..+ .|+-..|+.|...-.+....||-|+.++..
T Consensus 13 ~~~~~C~I--C~~~~-~~---~~~~--~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAI--CLQTC-VH---PVSL--PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSS--SSSBC-SS---EEEE--TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCcc--CCccc-CC---CEEc--cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34568999 86553 11 1233 577778999997666666899999999874
No 34
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=64.74 E-value=8.2 Score=30.94 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=35.0
Q ss_pred CCCccccccCCCcccccCCCCccccc-ccCCccchhhhhhhhhcCCCCCCCCCCC
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDAQKDTGLCPGCKEPY 182 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y 182 (1124)
....|.| |-++... |+..+.. .|+-..|+.|...-.+....||-|+.++
T Consensus 4 ~~~~C~I--C~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAV--CLAELED---GEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTT--TCCCCCT---TSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcCcc--CCccccC---CCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 3568999 8766532 3333334 5888899999976655568999999875
No 35
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.58 E-value=9.5 Score=31.97 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=35.0
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKLG 185 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r~ 185 (1124)
...|.| |.+.. . +..+ -.|+-..|+.|.+.-.+.+ ..||-|+.+++..
T Consensus 15 ~~~C~I--C~~~~-~----~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 15 KYKCEK--CHLVL-C----SPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CEECTT--TCCEE-S----SCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCC--CChHh-c----CeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 458999 86543 2 1222 2788888999998887655 8999999998763
No 36
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.22 E-value=6.4 Score=33.42 Aligned_cols=49 Identities=18% Similarity=0.475 Sum_probs=35.2
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhc--C-CCCCCCCCCCcCCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKD--T-GLCPGCKEPYKLGD 186 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~--g-~~Cp~Ck~~y~r~d 186 (1124)
...|.| |-+... +..+ ..|+-..|+.|...-.+. + ..||-|+.++...+
T Consensus 20 ~~~C~I--C~~~~~-----~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 20 EVICPI--CLDILQ-----KPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCBCTT--TCSBCS-----SEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CCEecc--CCcccC-----CeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 568999 865432 2222 278888999999877653 4 79999999987643
No 37
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=64.15 E-value=5 Score=34.73 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
.-.|.| |.+ ++.+ +.+ ..|+.-.|+.|.+.-.+.+ ..||.|+.+...
T Consensus 8 ~~~C~I--C~~-~~~~----Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPI--SLE-LMKD----PVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSCTT--TSC-CCSS----EEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cCCCCC--ccc-cccC----CEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 458999 753 3332 222 2799999999998888876 999999999875
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=63.07 E-value=5.4 Score=37.00 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=35.6
Q ss_pred CCccccccCCCcccccCCCCcccccccC-CccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECR-FKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~-f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
.-.|.| |. ++|.| +.+. .|+ .-.||.|.+.-.++...||.|++++..
T Consensus 22 ~~~CpI--~~-~~m~d----PV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 22 EFLDPI--MS-TLMCD----PVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTBCTT--TC-SBCSS----EEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred hcCCcC--cc-ccccC----CeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 458999 74 45664 2221 688 999999998887766899999999874
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=61.25 E-value=5.4 Score=35.86 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=35.7
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
.-.|.| |. ++|.| +.+. .||.-.||.|-+.-.++...||.|++++..
T Consensus 14 ~~~CpI--~~-~~m~d----PV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 14 EFRDPL--MD-TLMTD----PVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTBCTT--TC-SBCSS----EEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred heECcc--cC-chhcC----CeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 458999 74 45664 3322 499999999998887756999999998864
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=60.96 E-value=5.3 Score=37.19 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
.-.|.| |. ++|.| +.+. .||.-.||.|-+.-.+....||.|+.++..
T Consensus 29 ~~~CpI--~~-~~m~d----PV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 29 EFRDPL--MD-TLMTD----PVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTBCTT--TC-SBCSS----EEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred hhCCcC--cc-CcccC----CeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 458999 74 45654 3222 499999999998887755999999999874
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=60.20 E-value=12 Score=31.24 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=34.1
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
+..|.| |-+... +..... .|+-..|+.|...-.+....||-|+.+...
T Consensus 5 ~~~C~I--C~~~~~---~~~~~~--~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPI--CLEDPS---NYSMAL--PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSS--CCSCCC---SCEEET--TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCee--CCcccc---CCcEec--CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 568999 865532 111233 577778999997766656999999999874
No 42
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.16 E-value=11 Score=32.64 Aligned_cols=47 Identities=21% Similarity=0.643 Sum_probs=33.7
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhc-----C-CCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKD-----T-GLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~-----g-~~Cp~Ck~~y~r 184 (1124)
...|.| |-+... +.. ...|+-..|+.|...-.+. + ..||-|+.+...
T Consensus 19 ~~~C~I--C~~~~~-----~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPI--CLELLT-----QPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTT--TCSCCS-----SCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCC--CCcccC-----Cce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 468999 865541 121 1268888999999765443 3 899999999886
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=59.69 E-value=5.1 Score=41.46 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=35.9
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
.-.|.| |. ++|.| +++. .||.-.||.|-+.-...+ ..||.|+.++..
T Consensus 106 ~f~CPI--~~-elm~D----PV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKI--SF-ELMRE----PCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTT--TC-SBCSS----EEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccC--cc-ccCCC----CeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 448999 64 56664 4443 699999999998887765 669999998864
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=58.62 E-value=3.3 Score=38.94 Aligned_cols=55 Identities=25% Similarity=0.614 Sum_probs=42.0
Q ss_pred CCCCccccccCCCccccc-CCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 128 AKGSSCGMPACDGKAMKD-ERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 128 ~~g~~C~i~~C~~~v~~~-~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
.+...|.| |-+.+... +.++..+.+.|+-..|..|.+.-.+....||-|+.++..
T Consensus 70 ~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 34568999 87664332 345555666999999999998777777999999999875
No 45
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.34 E-value=9.8 Score=32.86 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=33.9
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhc-----C-CCCCCCCCCCcCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKD-----T-GLCPGCKEPYKLG 185 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~-----g-~~Cp~Ck~~y~r~ 185 (1124)
...|.| |-+... + -.. ..|+-..|+.|...-.+. + ..||-|+.++...
T Consensus 19 ~~~C~I--C~~~~~-~---p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPI--CLELLK-E---PVS--ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTT--TCSCCS-S---CEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcC--CChhhC-c---cee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 458999 865531 1 112 368888999999876554 3 8999999998753
No 46
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=55.46 E-value=8.1 Score=36.59 Aligned_cols=46 Identities=22% Similarity=0.579 Sum_probs=33.5
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
-.|.| |-+..- ++.+ -.|+--.|+.|...-.+.+ ..||.|+.++..
T Consensus 53 ~~C~I--C~~~~~-----~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCIC--CQELVF-----RPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTT--TSSBCS-----SEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCc--CChHHc-----CcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999 854432 2221 2788889999998777656 699999999875
No 47
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.06 E-value=14 Score=31.78 Aligned_cols=47 Identities=21% Similarity=0.608 Sum_probs=31.7
Q ss_pred CCCCCCccccccCCCcccccCCCCcccccccCCc-cchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 126 AGAKGSSCGMPACDGKAMKDERGNDIIPCECRFK-ICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 126 ~~~~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
...+...|.| |-+. +.--.|+|| +=. .|..|... -+.||-|+.+...
T Consensus 11 ~~~~~~~C~I--C~~~----~~~~v~~pC--gH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVV--CQNG----TVNWVLLPC--RHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSS--SSSS----CCCCEETTT--TBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCC--cCcC----CCCEEEECC--CChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3445678999 8543 223446676 333 79999962 3899999998764
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.81 E-value=11 Score=32.45 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=36.7
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
....|.| |-+++.. ++.++.-.|+-..|+.|..--.+....||-|+.++..
T Consensus 22 ~~~~C~I--C~~~~~~---~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVV--CMCDFES---RQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETT--TTEECCB---TCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeE--CCcccCC---CCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4568999 8766432 4433333678889999997666666899999988764
No 49
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=54.39 E-value=6.2 Score=37.43 Aligned_cols=28 Identities=32% Similarity=0.893 Sum_probs=23.2
Q ss_pred CCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 157 RFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 157 ~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
.=-.|-+|++.-.+++ +.||.|+.+..+
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 3366999998777777 999999999876
No 50
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=52.43 E-value=8.8 Score=37.20 Aligned_cols=45 Identities=22% Similarity=0.533 Sum_probs=32.3
Q ss_pred ccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 132 SCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 132 ~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
.|.| |-+.. .+ + +...|+--.|+.|...-.+....||-|+.+.+.
T Consensus 55 ~C~i--C~~~~-~~----~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCII--CSEYF-IE----A-VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp BCTT--TCSBC-SS----E-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCcc--cCccc-CC----c-eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 6999 86443 21 1 223688889999997666656889999998863
No 51
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=51.10 E-value=11 Score=34.25 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=34.1
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
-.|.| |-+.. . ++.+.-.|+-..|+.|...-.+....||.|+.+...
T Consensus 23 ~~C~I--C~~~~-~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGI--CFEYF-N----IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTT--TCSBC-S----SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCccc--CChhh-C----CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 47999 85443 1 222222688889999997776666899999999875
No 52
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.14 E-value=20 Score=31.20 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=34.0
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCc
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYK 183 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~ 183 (1124)
.-.|.| |-+.. .+ +.+ -.|+-..|+.|...-.+....||-|+.++.
T Consensus 15 ~~~C~I--C~~~~-~~----p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFI--CRQAF-QN----PVV-TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSS--SCSBC-CS----EEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcC--CCchh-cC----eeE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 458999 86554 21 221 367888899999877766689999999986
No 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=49.92 E-value=12 Score=33.75 Aligned_cols=50 Identities=18% Similarity=0.503 Sum_probs=35.7
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCc
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYK 183 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~ 183 (1124)
....|.| |-+... .|+..+...|+-..|+.|...-.+....||-|+.+..
T Consensus 39 ~~~~C~I--C~~~~~---~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPI--CCSEYV---KGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETT--TTEECC---TTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcc--cChhhc---CCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4568999 865542 3454443468888999999766655589999998764
No 54
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.49 E-value=16 Score=33.54 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=32.8
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhc--C-CCCCCCCCCCcCC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKD--T-GLCPGCKEPYKLG 185 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~--g-~~Cp~Ck~~y~r~ 185 (1124)
..|.| |-+.. . ++.+ ..|+-..|+.|...-.+. + ..||-|+.+....
T Consensus 22 ~~C~I--C~~~~-~----~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPI--CLELI-K----EPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSS--SCCCC-S----SCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcc--cChhh-c----CeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 47999 86543 1 1111 368888899999776553 3 5899999988753
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=48.28 E-value=12 Score=34.52 Aligned_cols=49 Identities=20% Similarity=0.501 Sum_probs=35.7
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKLG 185 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r~ 185 (1124)
.-.|.| |-+.. . ++.+...|+-..|+.|...-.+....||.|+.+....
T Consensus 15 ~~~C~I--C~~~~-~----~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVL--CGGYF-I----DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTT--TSSBC-S----SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCcc--CChHH-h----CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 347999 75443 2 2333237888889999987777779999999998753
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.26 E-value=20 Score=31.59 Aligned_cols=53 Identities=19% Similarity=0.485 Sum_probs=37.6
Q ss_pred CCCccccccCCCccccc--------CCCC-cccccccCCccchhhhhhhhhcCCCCCCCCCCCc
Q 042084 129 KGSSCGMPACDGKAMKD--------ERGN-DIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYK 183 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~--------~~G~-~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~ 183 (1124)
....|.| |-+++... +.++ ..+...|+=.-|+.|...=.+..+.||-|+.++.
T Consensus 14 ~~~~C~I--C~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAI--CRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTT--TTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcc--cChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4568999 87776432 1233 3333379999999999766665689999999875
No 57
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=46.85 E-value=10 Score=35.39 Aligned_cols=45 Identities=20% Similarity=0.665 Sum_probs=33.3
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCc
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYK 183 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~ 183 (1124)
-.|.| |-+.. . ++.+. .|+--.|+.|...-.+.+ ..||.|+.++.
T Consensus 16 ~~C~i--C~~~~-~----~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGI--CMEIL-V----EPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTT--TCSBC-S----SCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCcc--CCccc-C----ceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 47999 86443 1 22222 788889999998777776 89999999986
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.74 E-value=18 Score=33.99 Aligned_cols=45 Identities=22% Similarity=0.536 Sum_probs=33.3
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
-.|.| |-+.. -++.+...|+--.|+.|...-.+ ..||.|+.++..
T Consensus 23 ~~C~I--C~~~~-----~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSR--CTNIL-----REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TSCSS--SCSCC-----SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCC--CChHh-----hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 47999 75443 23445457899999999966654 889999999864
No 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=46.45 E-value=13 Score=34.08 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=35.4
Q ss_pred CccccccCCCcccccCCCCccccc-ccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
-.|.| |-+..- .-+.| .|+--.|+.|...-.+.. ..||.|+.++..
T Consensus 23 ~~C~I--C~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFI--CMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTT--TCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCcc--CCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 37999 865541 23444 789999999998877777 799999999864
No 60
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=44.77 E-value=19 Score=30.81 Aligned_cols=47 Identities=23% Similarity=0.674 Sum_probs=33.1
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhc------C-CCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKD------T-GLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~------g-~~Cp~Ck~~y~r 184 (1124)
...|.| |-+.. .+ +.+ ..|+-..|+.|...-.+. + ..||-|+.++..
T Consensus 12 ~~~C~I--C~~~~-~~----p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPI--CLELL-TE----PLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETT--TTEEC-SS----CCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcC--CCccc-CC----eeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 458999 86543 21 211 378888999999765443 3 789999999876
No 61
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=44.47 E-value=20 Score=33.12 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCccccccCCCcccccC-----------CCCccccc-ccCCccchhhhhhhhh----cC-CCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDE-----------RGNDIIPC-ECRFKICRDCYMDAQK----DT-GLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~-----------~G~~f~~C-eC~f~iCr~Cy~~~~~----~g-~~Cp~Ck~~y~r 184 (1124)
...|.| |-+.+...+ +-...+.. .|+=..|+.|..--.+ .. ..||-|++.|..
T Consensus 25 ~~~C~I--Cl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCII--CMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETT--TTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCcc--CChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999 876654321 11122223 7888999999976553 34 799999999964
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=43.67 E-value=14 Score=34.43 Aligned_cols=56 Identities=25% Similarity=0.589 Sum_probs=41.3
Q ss_pred CCCccccccCCCccccc-CCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcCCC
Q 042084 129 KGSSCGMPACDGKAMKD-ERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKLGD 186 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~-~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r~d 186 (1124)
+.-.|.| |-+..... ++|+..+.-.|+-..|+.|...-.+....||-|+.++...+
T Consensus 6 ~~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTT--TCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcc--cChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3458999 87664322 13554455589999999999877777789999999997643
No 63
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.94 E-value=19 Score=32.51 Aligned_cols=41 Identities=20% Similarity=0.560 Sum_probs=32.4
Q ss_pred CCCCCCccccccCCCcccccCCCCccccc-ccCCccchhhhhhhhh
Q 042084 126 AGAKGSSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDAQK 170 (1124)
Q Consensus 126 ~~~~g~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~~ 170 (1124)
.+-+...|.. |....|+- ++--++| .|...||+.|-.+..+
T Consensus 21 ~~~~~r~Car--C~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 21 QHYSDRTCAR--CQESLGRL--SPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp TTCCCCBCSS--SCCBCSSS--CTTTSEETTTTEECCTTSEEECST
T ss_pred cCCCccchhh--hCcccccc--ccCCCcCcccChhhcccccccCCC
Confidence 3556779999 99898875 4555799 9999999999876644
No 64
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=39.63 E-value=17 Score=36.00 Aligned_cols=47 Identities=23% Similarity=0.587 Sum_probs=34.2
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcCC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKLG 185 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r~ 185 (1124)
-.|.| |-+.. . ++.+ ..|+--.|+.|...-.+.+ ..||-|+.++...
T Consensus 79 ~~C~I--C~~~~-~----~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVC--CQELV-Y----QPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTT--TSSBC-S----SEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeec--CChhh-c----CCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47999 85432 2 1221 3788888999998887767 6999999998764
No 65
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.47 E-value=16 Score=30.76 Aligned_cols=48 Identities=19% Similarity=0.504 Sum_probs=34.0
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcCCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKLGD 186 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r~d 186 (1124)
...|.| |-+... +..+ .|+-..|+.|...-.+....||-|+.+....+
T Consensus 15 ~~~C~I--C~~~~~-----~~~~--~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCI--CMDGRA-----DLIL--PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSS--SCCSCC-----SEEE--TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCee--CCcCcc-----Cccc--CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 568999 865431 1444 56667899999765554499999999887543
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=36.52 E-value=41 Score=28.82 Aligned_cols=48 Identities=19% Similarity=0.499 Sum_probs=33.6
Q ss_pred CCccccccCCCcccccCCCCcccccc-cCCccchhhhhhhhhc-C-CCCCCCCCCCcCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCE-CRFKICRDCYMDAQKD-T-GLCPGCKEPYKLG 185 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~Ce-C~f~iCr~Cy~~~~~~-g-~~Cp~Ck~~y~r~ 185 (1124)
.-.|.| |-+.. . ++.+ -. |+--.|+.|...-.+. + ..||.|+.++.+.
T Consensus 15 ~~~C~I--C~~~~-~----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLI--CKDIM-T----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSS--SCCCC-T----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCcC--CChHH-h----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 458999 85443 2 2222 34 8889999999877664 4 7999999976543
No 67
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=33.43 E-value=26 Score=40.35 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=31.7
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
...|.| |-+.. . .-... .|+=..|..|...-.+.. ..||-|+.+...
T Consensus 332 ~~~C~I--Cle~~-~---~pv~l--pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKI--CAEND-K---DVKIE--PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTT--TSSSB-C---CEEEE--TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCc--cCcCC-C---CeEEe--CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 468999 85443 1 11234 455556999996655535 999999998875
No 68
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=32.74 E-value=24 Score=31.34 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=32.4
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhc-C-CCCCCCCCCCc
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKD-T-GLCPGCKEPYK 183 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~-g-~~Cp~Ck~~y~ 183 (1124)
.-.|.| |.+. +.+ +.+.-.|+--.|+.|.+.-.+. + ..||.|+.++.
T Consensus 13 ~~~C~I--C~~~-~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLI--CKDI-MTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETT--TTEE-CSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCC--CChh-hcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999 8643 332 2222138999999999776543 4 79999999874
No 69
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=32.31 E-value=21 Score=33.47 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=34.2
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
-.|.| |.+.. .+ + +-..|+--.|+.|...-.+.+ ..||-|+.+...
T Consensus 19 ~~C~I--C~~~~-~~----p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPI--CLMAL-RE----A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTT--TCSBC-SS----E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCc--CChhh-cC----e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 48999 76443 22 2 223789999999998877766 599999998875
No 70
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.57 E-value=21 Score=35.17 Aligned_cols=37 Identities=19% Similarity=0.653 Sum_probs=28.3
Q ss_pred CCCCCccccccCCCccc-ccCCCCccccc-ccCCccchhhhhhh
Q 042084 127 GAKGSSCGMPACDGKAM-KDERGNDIIPC-ECRFKICRDCYMDA 168 (1124)
Q Consensus 127 ~~~g~~C~i~~C~~~v~-~~~~G~~f~~C-eC~f~iCr~Cy~~~ 168 (1124)
+.+...|.+ |....| ++..| ..| .|...||+.|-.+.
T Consensus 52 ~~~~~~C~~--C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCIL--CGEQLGMLGSAS---VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSS--SCCBCSTTSCCE---EECTTTCCEEETTSEEEC
T ss_pred cCCCccccc--cCCCcccccCCC---CCCCCCCcccccccCCcc
Confidence 456779999 877875 33345 789 99999999998543
No 71
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.10 E-value=8.3 Score=38.93 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=34.6
Q ss_pred CCCccccccCCCcccccCCCCccccc-ccCCccchhhhhhhhhcC-CCCCCC
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDAQKDT-GLCPGC 178 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~~~g-~~Cp~C 178 (1124)
+...|.+ |....+.- ++.-+.| .|...||+.|-.+-++++ =+|--|
T Consensus 67 ~~~~C~~--C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC 114 (153)
T 2zet_C 67 NETHCAR--CLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPC 114 (153)
T ss_dssp GGTBCTT--TCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHH
T ss_pred CCccchh--hcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHH
Confidence 5779999 87776554 3446789 999999999997776665 555544
No 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=31.05 E-value=26 Score=32.56 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=35.2
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKLG 185 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r~ 185 (1124)
.-.|.| |.+.. . ++.+ ..|+--.|+.|...-.+.+ ..||-|+.++...
T Consensus 23 ~~~C~I--C~~~~-~----~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQI--CEHIL-A----DPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTT--TCSBC-S----SEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCC--CCcHh-c----CcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 347999 85443 2 2222 3788889999998877775 8999999998763
No 73
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.64 E-value=19 Score=34.45 Aligned_cols=25 Identities=28% Similarity=0.701 Sum_probs=16.4
Q ss_pred ccc-ccCCccchhhhhhhhhcCCCCCCCCCC
Q 042084 152 IPC-ECRFKICRDCYMDAQKDTGLCPGCKEP 181 (1124)
Q Consensus 152 ~~C-eC~f~iCr~Cy~~~~~~g~~Cp~Ck~~ 181 (1124)
.-| +|||.. .++.+.-..||.||..
T Consensus 68 ~~C~~CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBC-----CCCSSCCSSCSSSCCC
T ss_pred cChhhCcCee-----cccCCCCCCCcCCCCC
Confidence 347 888886 1222233999999964
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=29.12 E-value=28 Score=34.64 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=35.2
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcC-CCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDT-GLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g-~~Cp~Ck~~y~r 184 (1124)
-.|.| |.+.. .+ + +-+.|+--.|+.|...-.+.+ ..||.|+.++..
T Consensus 19 ~~C~I--C~~~~-~~----p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPI--CLMAL-RE----A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTT--TCSBC-SS----E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCC--CChhh-cC----c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 47999 85442 32 3 336899999999998887766 699999998875
No 75
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=26.46 E-value=22 Score=32.47 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=39.0
Q ss_pred CCCcCCCCCCccccccCCCcccccCCCCccccc-ccCCccchhhhhhh-hhcC-CCCCCCCCCCc
Q 042084 122 HPQMAGAKGSSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDA-QKDT-GLCPGCKEPYK 183 (1124)
Q Consensus 122 ~~~~~~~~g~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~-~~~g-~~Cp~Ck~~y~ 183 (1124)
.++....+...|.||+-++ .++++.++-| .|.-..=..||.-. .-+| =.||.|...-.
T Consensus 17 ~~~~~~~~~~~C~vC~~~~----s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 17 SSQSLIDEDAVCSICMDGE----SQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp TTTCCCCCCCCCSSCCSSS----SCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCCCCcCCcCCCCC----CCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3344445677999944321 1356689999 89888788999654 4466 88999975443
No 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=26.41 E-value=55 Score=35.06 Aligned_cols=47 Identities=19% Similarity=0.616 Sum_probs=36.6
Q ss_pred CCccccccCCCcccccCCCCccccc-ccCCccchhhhhhhhhc-C-CCCCCCCCCCcC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDAQKD-T-GLCPGCKEPYKL 184 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~~~~-g-~~Cp~Ck~~y~r 184 (1124)
-..|++ |-+-|.. | .-| .|+-..=+.|+.--.+. + ..||.|+++...
T Consensus 180 i~~C~i--C~~iv~~---g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNI--CHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTT--TCSBCSS---C---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcc--hhhHHhC---C---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 458999 9877775 3 678 79999999999765443 3 799999997654
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=24.99 E-value=27 Score=29.56 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=35.4
Q ss_pred CccccccCCCcccccCCCCcccccccCCccchhhhhhhhhcCCCCCCCCCCCcC
Q 042084 131 SSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKL 184 (1124)
Q Consensus 131 ~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~r 184 (1124)
-.|.| |+ ++|.| +.+.-.||+-.||.|-+.-.++.+.||-++++.+.
T Consensus 4 ~~CpI--s~-~~m~d----PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAI--SG-KVPRR----PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTT--TC-SCCSS----EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecC--CC-CCCCC----CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 47888 54 56664 33332799999999998887766779999998864
No 78
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=24.18 E-value=39 Score=28.53 Aligned_cols=49 Identities=22% Similarity=0.589 Sum_probs=32.4
Q ss_pred CCCccccccCCCcccccCCCCcccccccCCc-cchhhhhhhhhcCCCCCCCCCCCc
Q 042084 129 KGSSCGMPACDGKAMKDERGNDIIPCECRFK-ICRDCYMDAQKDTGLCPGCKEPYK 183 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~~~g~~Cp~Ck~~y~ 183 (1124)
....|.| |-++. ..-.|+.-.|+-. .|..|.+.-.+.++.||-|+.+.+
T Consensus 7 ~~~~C~I--C~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVI--CQGRP----KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTT--TSSSC----SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCc--CCCCC----CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3457999 85442 2224551135555 699999766665689999999875
No 79
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=23.71 E-value=58 Score=37.56 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=29.9
Q ss_pred CchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHH
Q 042084 604 KKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGM 644 (1124)
Q Consensus 604 ~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~am 644 (1124)
+|..||=+++.++.. .++++|+.+|||-|+ |..+.+..
T Consensus 144 GKG~Am~aGl~~A~~-~~gd~Vv~~DaDl~i--P~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAKA-IGAEYVGFVDADNYI--PGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHHH-TTCSEEEECCSCBSC--HHHHHHHH
T ss_pred ChHHHHHHHHHHHhh-CCCCEEEEEeCCCCC--HHHHHHHH
Confidence 699999999976421 279999999999955 78776543
No 80
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.17 E-value=33 Score=42.79 Aligned_cols=52 Identities=23% Similarity=0.607 Sum_probs=35.4
Q ss_pred CCccccccCCCcccccCC----CCccccc-ccC--------------------Cccchhhhhhh-----hh---cCCCCC
Q 042084 130 GSSCGMPACDGKAMKDER----GNDIIPC-ECR--------------------FKICRDCYMDA-----QK---DTGLCP 176 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~----G~~f~~C-eC~--------------------f~iCr~Cy~~~-----~~---~g~~Cp 176 (1124)
-.+|.= |-.++ .|.+ .-+|+-| +|+ |+.|.+|-..- |+ ..-+||
T Consensus 111 ~a~C~~--Cl~e~-~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 111 MGVCED--CLREL-KDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp BCCCHH--HHHHH-TCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred ccccHH--HHHHh-cCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 346766 76554 3332 3469999 998 99999996432 22 227899
Q ss_pred CCCCCCcC
Q 042084 177 GCKEPYKL 184 (1124)
Q Consensus 177 ~Ck~~y~r 184 (1124)
.|+=++.-
T Consensus 188 ~CGP~l~l 195 (761)
T 3vth_A 188 DCGPSLSF 195 (761)
T ss_dssp TTSCCEEE
T ss_pred ccCCeeEE
Confidence 99988753
No 81
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=22.70 E-value=74 Score=29.86 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCCccccccCCCccccc----------CCCC--cccccccCCccchhhhhhhhhcCCCCCCCCCCCc
Q 042084 129 KGSSCGMPACDGKAMKD----------ERGN--DIIPCECRFKICRDCYMDAQKDTGLCPGCKEPYK 183 (1124)
Q Consensus 129 ~g~~C~i~~C~~~v~~~----------~~G~--~f~~CeC~f~iCr~Cy~~~~~~g~~Cp~Ck~~y~ 183 (1124)
....|.| |-+.+... ..|+ ..+.-.|+-..++.|..--.+....||-|+.+++
T Consensus 36 ~~d~CaI--C~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAI--CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSS--SCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCcc--CChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4568999 86665432 1222 2333389999999998665555589999999864
No 82
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=22.62 E-value=76 Score=36.48 Aligned_cols=42 Identities=26% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCchhHHHHHHHhccccCCCCEEEeecCCCccCchHHHHHHHHHH
Q 042084 603 NKKAGAMNALVRASAILSNGPFILNLDCDHYIYNCKAIREGMCFM 647 (1124)
Q Consensus 603 ~~KAGALNallRvSavlsngpfIlnlDcD~y~nnp~~Lr~amcff 647 (1124)
..|+++|=.++.... +..++||..+|+|-|+ |.++.+.+-.|
T Consensus 142 ~GKGegmi~Gi~~Ak-~~~geYVgFvDADdyi--~~~v~Eyvk~y 183 (391)
T 2wvl_A 142 SGKAEGMILALVFAA-LSGRRYVGFIDADNYF--PGAVWEYVRAY 183 (391)
T ss_dssp CSHHHHHHHHHHHHH-HTTCSEEEECCSCBSC--HHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH-hcCCCEEEEEcCcCCC--ccCHHHHHHHH
Confidence 369999999887643 3489999999999999 45555544333
No 83
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=22.27 E-value=28 Score=33.44 Aligned_cols=29 Identities=21% Similarity=0.563 Sum_probs=20.3
Q ss_pred ccCCccchhhhhhhhh------cC-CCCCCCCCCCc
Q 042084 155 ECRFKICRDCYMDAQK------DT-GLCPGCKEPYK 183 (1124)
Q Consensus 155 eC~f~iCr~Cy~~~~~------~g-~~Cp~Ck~~y~ 183 (1124)
+|++++|..|-..... =+ .+|-.||..|.
T Consensus 2 ~~~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~~ 37 (111)
T 1d4u_A 2 EFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADD 37 (111)
T ss_dssp CCCCEECTTTCCEESCSSSTTTTSCCCCTTTCSSSS
T ss_pred CCCCCccccCCChhhHHHHHHhCCeeechhhccccc
Confidence 5778888888654422 23 89999998763
No 84
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=22.15 E-value=86 Score=32.91 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=23.7
Q ss_pred CCEEEeecCCCccCchHHHHHHHHHHhc
Q 042084 622 GPFILNLDCDHYIYNCKAIREGMCFMMD 649 (1124)
Q Consensus 622 gpfIlnlDcD~y~nnp~~Lr~amcff~D 649 (1124)
.++++++|||+=.-+++.+++.+..+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5899999999866579999998888765
No 85
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=21.94 E-value=47 Score=27.94 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=31.6
Q ss_pred CCccccccCCCcccccCCCCcccccccCCc-cchhhhhhhhhcCCCCCCCCCCCc
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFK-ICRDCYMDAQKDTGLCPGCKEPYK 183 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~-iCr~Cy~~~~~~g~~Cp~Ck~~y~ 183 (1124)
...|.| |-+.- ..-.++.-.|+-. .|..|...-.+.++.||-|+.+.+
T Consensus 7 ~~~C~I--C~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSL--CEKRP----RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTT--TSSSB----SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcc--cCCcC----CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 457999 85431 1223552234444 799999766655689999999875
No 86
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.72 E-value=37 Score=29.90 Aligned_cols=55 Identities=22% Similarity=0.457 Sum_probs=37.5
Q ss_pred CCCcCCCCCCccccccCCCcccccCCCCccccc-ccCCccchhhhhhh-hhcC-CCCCCCCC
Q 042084 122 HPQMAGAKGSSCGMPACDGKAMKDERGNDIIPC-ECRFKICRDCYMDA-QKDT-GLCPGCKE 180 (1124)
Q Consensus 122 ~~~~~~~~g~~C~i~~C~~~v~~~~~G~~f~~C-eC~f~iCr~Cy~~~-~~~g-~~Cp~Ck~ 180 (1124)
|-|....+...|.||+-++ .++++.++.| .|.-..=..||.-. .-+| =.||.|..
T Consensus 8 ~~~~~~~~~~~C~vC~~~~----s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 8 HMQSLIDEDAVCSICMDGE----SQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp --CCCCCSSCSCSSSCCCC----CCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred ccccCCCCCCCCCCCCCCC----CCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3455667788999944332 2456789999 89888888999654 3456 78888753
No 87
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.21 E-value=23 Score=37.09 Aligned_cols=27 Identities=19% Similarity=0.572 Sum_probs=20.8
Q ss_pred CCccccccCCCccccc----CCCCcccccccCCccchhhhhh
Q 042084 130 GSSCGMPACDGKAMKD----ERGNDIIPCECRFKICRDCYMD 167 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~----~~G~~f~~CeC~f~iCr~Cy~~ 167 (1124)
.-+|++ ||+.|+-. .+|+ .+|++|++.
T Consensus 172 ~~~C~~--CGE~~~~~~~~~~~g~---------~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDV--CGEYTYEADAKLLNGK---------PVCKPDYYG 202 (204)
T ss_dssp EEECTT--TCCEEEGGGCEEETTE---------EECHHHHHC
T ss_pred ceECCC--CCCchhhcceeeeCCc---------EEChhhhcc
Confidence 458999 99888765 3565 799999954
No 88
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=75 Score=26.01 Aligned_cols=41 Identities=20% Similarity=0.530 Sum_probs=29.1
Q ss_pred CCccccccCCCcccccCCCCcccccccCCccchhhhhhhhhc--C-CCCCCC
Q 042084 130 GSSCGMPACDGKAMKDERGNDIIPCECRFKICRDCYMDAQKD--T-GLCPGC 178 (1124)
Q Consensus 130 g~~C~i~~C~~~v~~~~~G~~f~~CeC~f~iCr~Cy~~~~~~--g-~~Cp~C 178 (1124)
...|.| |-+..- ++.+. .|+--.|+.|.+.-.+. + ..||-|
T Consensus 20 ~~~C~I--C~~~~~-----~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPI--CLDILQ-----KPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTT--TCSBCS-----SCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCc--CCchhC-----CeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 558999 865432 23222 78888999999877663 4 789988
Done!