Query 042085
Match_columns 90
No_of_seqs 93 out of 95
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.7E-30 3.6E-35 181.9 4.4 72 1-77 45-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 1.2E-21 2.7E-26 122.2 3.7 64 3-67 1-70 (70)
3 PLN00214 putative protein; Pro 76.8 1.5 3.2E-05 31.1 1.3 39 12-52 45-87 (115)
4 cd01960 nsLTP1 nsLTP1: Non-spe 45.1 12 0.00027 23.7 1.1 61 3-68 2-76 (89)
5 smart00499 AAI Plant lipid tra 39.0 11 0.00023 22.0 0.1 39 4-47 1-43 (79)
6 cd04660 nsLTP_like nsLTP_like: 33.6 26 0.00056 21.7 1.2 35 8-46 5-41 (73)
7 cd00010 AAI_LTSS AAI_LTSS: Alp 31.1 28 0.00061 20.3 1.1 27 22-48 7-37 (63)
8 cd03727 SOCS_ASB8 SOCS (suppre 22.1 61 0.0013 19.1 1.4 31 31-65 8-39 (43)
9 PF14368 LTP_2: Probable lipid 19.4 29 0.00064 21.5 -0.4 31 22-52 35-68 (96)
10 cd01959 nsLTP2 nsLTP2: Non-spe 16.0 57 0.0012 20.3 0.3 35 8-48 3-37 (66)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=1.7e-30 Score=181.93 Aligned_cols=72 Identities=21% Similarity=0.458 Sum_probs=66.9
Q ss_pred CchhhhhccCCcchHHHHHHHHHhCccc-cCcccchHHHhcccCcchhhhccCCCCcchhhHHHhhhhhcCCCCCCcc
Q 042085 1 LTECWNSLMELKSCSNDIVIFFLNSQTD-IGPDCCHAIDIITCNYWPAMLTSLGFTVEEGNILRDYYNASSAPSLGGL 77 (90)
Q Consensus 1 l~~Cwssl~~v~gC~~EI~~~~l~G~~~-igp~CC~Ai~~i~~~CWP~mfp~~pf~~~e~~~LK~~C~~~~~~sp~~~ 77 (90)
++||||||++++||+.||++++++|+++ ||++|||||++++ +|||+| |++||||+ +||++|++++.++++++
T Consensus 45 ~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 45 ITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP 117 (118)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence 4799999999999999999999999997 9999999999966 999996 99999999 99999999987776654
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.84 E-value=1.2e-21 Score=122.21 Aligned_cols=64 Identities=28% Similarity=0.601 Sum_probs=56.2
Q ss_pred hhhhhccCCcchHHHHHHHHHhCcc-ccCcccchHHHhcccCcchh---hhccCCCCcc--hhhHHHhhhh
Q 042085 3 ECWNSLMELKSCSNDIVIFFLNSQT-DIGPDCCHAIDIITCNYWPA---MLTSLGFTVE--EGNILRDYYN 67 (90)
Q Consensus 3 ~Cwssl~~v~gC~~EI~~~~l~G~~-~igp~CC~Ai~~i~~~CWP~---mfp~~pf~~~--e~~~LK~~C~ 67 (90)
|||++++++++|.+||+.+|++|+. .||++||+||+.++++|||+ |||+.|++++ + ++||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 7999999999999999999999995 49999999999999999999 5555665555 4 49999996
No 3
>PLN00214 putative protein; Provisional
Probab=76.79 E-value=1.5 Score=31.12 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=31.5
Q ss_pred cchHHHHHHHHH-hCccccCcccchHHHhcccCc---chhhhccC
Q 042085 12 KSCSNDIVIFFL-NSQTDIGPDCCHAIDIITCNY---WPAMLTSL 52 (90)
Q Consensus 12 ~gC~~EI~~~~l-~G~~~igp~CC~Ai~~i~~~C---WP~mfp~~ 52 (90)
+-|..||+..++ ||. ...+||+-+...+.+| |=++|.+.
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~~ 87 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIADK 87 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHcc
Confidence 559999999998 666 5899999999999999 44555433
No 4
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=45.07 E-value=12 Score=23.69 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=35.1
Q ss_pred hhhhhccCCcchHHHHHHHHHhCccc-cCcccchHHHhccc------------CcchhhhccCC-CCcchhhHHHhhhhh
Q 042085 3 ECWNSLMELKSCSNDIVIFFLNSQTD-IGPDCCHAIDIITC------------NYWPAMLTSLG-FTVEEGNILRDYYNA 68 (90)
Q Consensus 3 ~Cwssl~~v~gC~~EI~~~~l~G~~~-igp~CC~Ai~~i~~------------~CWP~mfp~~p-f~~~e~~~LK~~C~~ 68 (90)
+|=..+..+..|.. |++|... -+++||.+++.+.. .|.-.+....+ +.+.-..-|=+.|..
T Consensus 2 ~C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v 76 (89)
T cd01960 2 SCGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGV 76 (89)
T ss_pred CHHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhccc
Confidence 45556666677754 4455544 88999999998642 34433333322 444444455566644
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=39.05 E-value=11 Score=21.95 Aligned_cols=39 Identities=15% Similarity=0.411 Sum_probs=24.6
Q ss_pred hhhhccCCcchHHHHHHHHHhCc---cccCcccchHHHhc-ccCcchh
Q 042085 4 CWNSLMELKSCSNDIVIFFLNSQ---TDIGPDCCHAIDII-TCNYWPA 47 (90)
Q Consensus 4 Cwssl~~v~gC~~EI~~~~l~G~---~~igp~CC~Ai~~i-~~~CWP~ 47 (90)
|...+.++.+|..-+ ++. ......||.+++.+ ...|.=.
T Consensus 1 C~~~~~~~~~c~~~~-----~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSYL-----TGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHHH-----cCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 344445555554433 333 33778899999999 8888643
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=33.56 E-value=26 Score=21.66 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=21.5
Q ss_pred ccCCcchHHHHHHHHHhCc--cccCcccchHHHhcccCcch
Q 042085 8 LMELKSCSNDIVIFFLNSQ--TDIGPDCCHAIDIITCNYWP 46 (90)
Q Consensus 8 l~~v~gC~~EI~~~~l~G~--~~igp~CC~Ai~~i~~~CWP 46 (90)
+..+..|..- +..|. ..-+++||.+|+.++..|.=
T Consensus 5 ~~~L~~C~~y----l~~~~~~~~Ps~~CC~~vk~~~~~C~C 41 (73)
T cd04660 5 LDLLAECQPY----VTGPNPPPPPSRECCAALRRADLPCLC 41 (73)
T ss_pred HHHHHHHHHH----HcCCCCCCCCCHHHHHHHHcCCcCCEe
Confidence 3445556542 33333 23677899999988766753
No 7
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=31.08 E-value=28 Score=20.29 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=18.2
Q ss_pred HHhCccc-cCcccchHHHhccc---Ccchhh
Q 042085 22 FLNSQTD-IGPDCCHAIDIITC---NYWPAM 48 (90)
Q Consensus 22 ~l~G~~~-igp~CC~Ai~~i~~---~CWP~m 48 (90)
|++|... -.++||.+++.+.+ .|.=..
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~ 37 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVKSDPKCLCAA 37 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHhcChhhHHHH
Confidence 4455534 88899999999853 554443
No 8
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=22.13 E-value=61 Score=19.12 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=20.8
Q ss_pred cccchHHHhcc-cCcchhhhccCCCCcchhhHHHhh
Q 042085 31 PDCCHAIDIIT-CNYWPAMLTSLGFTVEEGNILRDY 65 (90)
Q Consensus 31 p~CC~Ai~~i~-~~CWP~mfp~~pf~~~e~~~LK~~ 65 (90)
.-|..||+..- .+|.+...+.+|. |+ .||+|
T Consensus 8 ~LcR~aiR~~lg~~~l~~aI~~LpL-P~---sLK~Y 39 (43)
T cd03727 8 ALARYAVRRSLGVQYLPEAVKQLPL-PR---SVKEY 39 (43)
T ss_pred HHHHHHHHHHHhhhhHHhhcccCCC-CH---HHHHH
Confidence 45788888664 5655554577775 44 88887
No 9
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=19.43 E-value=29 Score=21.50 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=18.2
Q ss_pred HHhCccccCcccchHHHhc---ccCcchhhhccC
Q 042085 22 FLNSQTDIGPDCCHAIDII---TCNYWPAMLTSL 52 (90)
Q Consensus 22 ~l~G~~~igp~CC~Ai~~i---~~~CWP~mfp~~ 52 (90)
+.++...-.++||.+++.+ +.+|.=.++...
T Consensus 35 ~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~ 68 (96)
T PF14368_consen 35 YVTGGPAPSAACCSALKSVVQADPPCLCQLLNSP 68 (96)
T ss_dssp HHCC-----HHHHHHHCC----HCCHHHCCCC-C
T ss_pred ccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCcc
Confidence 4556666999999999996 888866555443
No 10
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=16.03 E-value=57 Score=20.32 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=24.9
Q ss_pred ccCCcchHHHHHHHHHhCccccCcccchHHHhcccCcchhh
Q 042085 8 LMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPAM 48 (90)
Q Consensus 8 l~~v~gC~~EI~~~~l~G~~~igp~CC~Ai~~i~~~CWP~m 48 (90)
.+++..|...|. .| ..-..+||.+++... .|.=..
T Consensus 3 ~~~L~~C~~ai~----~~-~~Ps~~CC~~Lk~~~-~CLC~y 37 (66)
T cd01959 3 PTQLSPCLPAIL----GG-SPPSAACCAKLKEQQ-SCLCQY 37 (66)
T ss_pred hhhcccCHHHHh----CC-CCCCHHHHHHHhcCC-CCeeee
Confidence 356777887664 23 348999999999854 887554
Done!