Query 042085
Match_columns 90
No_of_seqs 93 out of 95
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 20.1 18 0.00063 22.6 -0.3 9 29-37 48-56 (74)
2 1ebo_A Ebola virus envelope pr 16.4 26 0.00087 24.1 -0.3 9 27-35 82-91 (131)
3 2knp_A Mcocc-1; disulfide-rich 12.7 29 0.00098 18.7 -0.7 13 41-53 16-28 (33)
4 1afh_A Maize nonspecific lipid 11.8 86 0.003 19.3 1.2 62 3-69 3-78 (93)
5 1n89_A Lipid transfer protein; 11.4 93 0.0032 18.1 1.2 32 10-47 6-37 (67)
6 1bwo_A NS-LTP1, nonspecific li 11.0 69 0.0024 19.8 0.5 62 3-69 2-76 (90)
7 2ljo_A Non-specific lipid-tran 10.4 1E+02 0.0035 19.3 1.2 62 4-70 4-78 (93)
8 2alg_A Non-specific lipid tran 9.2 95 0.0032 19.1 0.7 62 3-69 3-77 (92)
9 2lvf_A 2S albumin; allergen, c 9.1 94 0.0032 20.3 0.7 37 10-46 17-62 (114)
10 1l6h_A LTP2, non-specific lipi 9.1 82 0.0028 18.5 0.3 30 10-45 7-36 (69)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=20.13 E-value=18 Score=22.64 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=7.1
Q ss_pred cCcccchHH
Q 042085 29 IGPDCCHAI 37 (90)
Q Consensus 29 igp~CC~Ai 37 (90)
+||+||-.+
T Consensus 48 lgpdc~i~~ 56 (74)
T 2ebo_A 48 LGPDCAIEP 56 (74)
T ss_dssp HGGGGGCCC
T ss_pred cCCccccCH
Confidence 999999543
No 2
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=16.44 E-value=26 Score=24.08 Aligned_cols=9 Identities=44% Similarity=1.062 Sum_probs=7.2
Q ss_pred cc-cCcccch
Q 042085 27 TD-IGPDCCH 35 (90)
Q Consensus 27 ~~-igp~CC~ 35 (90)
-+ |||+||-
T Consensus 82 C~iLGPdCcI 91 (131)
T 1ebo_A 82 CHILGPDCRI 91 (131)
T ss_dssp HHHHGGGGGC
T ss_pred ceecCCcccc
Confidence 35 9999994
No 3
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=12.69 E-value=29 Score=18.65 Aligned_cols=13 Identities=31% Similarity=1.071 Sum_probs=8.8
Q ss_pred ccCcchhhhccCC
Q 042085 41 TCNYWPAMLTSLG 53 (90)
Q Consensus 41 ~~~CWP~mfp~~p 53 (90)
.-+|||.+-|..+
T Consensus 16 gcrcwptvtpgvg 28 (33)
T 2knp_A 16 GCRCWPTVTPGVG 28 (33)
T ss_dssp SCCEEECSSTTEE
T ss_pred ceeeccccCCCee
Confidence 3579998866543
No 4
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=11.84 E-value=86 Score=19.35 Aligned_cols=62 Identities=15% Similarity=0.364 Sum_probs=37.1
Q ss_pred hhhhhccCCcchHHHHHHHHHhCccc-cCcccchHHHhcc------------cCcchhhhccC-CCCcchhhHHHhhhhh
Q 042085 3 ECWNSLMELKSCSNDIVIFFLNSQTD-IGPDCCHAIDIIT------------CNYWPAMLTSL-GFTVEEGNILRDYYNA 68 (90)
Q Consensus 3 ~Cwssl~~v~gC~~EI~~~~l~G~~~-igp~CC~Ai~~i~------------~~CWP~mfp~~-pf~~~e~~~LK~~C~~ 68 (90)
+|=+.+..+..|..-+ .|... -.++||.+++.+. -.|.-...++. ++.+.-+.-|=+.|.-
T Consensus 3 ~C~~v~~~L~pCl~y~-----~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 3 SCGQVASAIAPCISYA-----RGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SSHHHHHHHGGGHHHH-----TTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred ChHHHHHhccCcHHHH-----cCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 3555555666665443 44434 6678999999884 14553322333 4555556677888866
Q ss_pred c
Q 042085 69 S 69 (90)
Q Consensus 69 ~ 69 (90)
.
T Consensus 78 ~ 78 (93)
T 1afh_A 78 S 78 (93)
T ss_dssp C
T ss_pred C
Confidence 4
No 5
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=11.44 E-value=93 Score=18.11 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCcchHHHHHHHHHhCccccCcccchHHHhcccCcchh
Q 042085 10 ELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYWPA 47 (90)
Q Consensus 10 ~v~gC~~EI~~~~l~G~~~igp~CC~Ai~~i~~~CWP~ 47 (90)
++..|...| +|.....++||.+++.. ..|.=.
T Consensus 6 ~L~pC~~~v-----~~~~~Ps~~CC~~lk~~-~~ClC~ 37 (67)
T 1n89_A 6 QLAVCASAI-----LSGAKPSGECCGNLRAQ-QGCFCQ 37 (67)
T ss_dssp TTHHHHHHH-----TTCCCCCHHHHHHHHHH-SSHHHH
T ss_pred hcccCHHHH-----cCCCCCCHHHHHhhCCC-CCCCCc
Confidence 445565544 33334888999999975 567543
No 6
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=10.99 E-value=69 Score=19.75 Aligned_cols=62 Identities=10% Similarity=0.347 Sum_probs=37.1
Q ss_pred hhhhhccCCcchHHHHHHHHHhCccccCcccchHHHhcc------------cCcchhhhccC-CCCcchhhHHHhhhhhc
Q 042085 3 ECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIIT------------CNYWPAMLTSL-GFTVEEGNILRDYYNAS 69 (90)
Q Consensus 3 ~Cwssl~~v~gC~~EI~~~~l~G~~~igp~CC~Ai~~i~------------~~CWP~mfp~~-pf~~~e~~~LK~~C~~~ 69 (90)
.|=+.+.++..|..-+ .|.....++||.+++.+. -.|.-....+. ++.+.-+.-|=+.|.-.
T Consensus 2 ~C~~v~~~L~pCl~y~-----~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 2 DCGHVDSLVRPCLSYV-----QGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp CHHHHHHHHGGGHHHH-----TTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred CHHHHHHhhcccHHHH-----cCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 3445555666676544 333237778999999864 25554333444 45555566777888654
No 7
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=10.38 E-value=1e+02 Score=19.25 Aligned_cols=62 Identities=13% Similarity=0.315 Sum_probs=33.3
Q ss_pred hhhhccCCcchHHHHHHHHHhCccccCcccchHHHhccc--------C----cchhhhc-cCCCCcchhhHHHhhhhhcC
Q 042085 4 CWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITC--------N----YWPAMLT-SLGFTVEEGNILRDYYNASS 70 (90)
Q Consensus 4 Cwssl~~v~gC~~EI~~~~l~G~~~igp~CC~Ai~~i~~--------~----CWP~mfp-~~pf~~~e~~~LK~~C~~~~ 70 (90)
|=+.+..+-.|.. ++.|.....++||..++.+.. . |.=..-. ..++...-+.-|=+.|....
T Consensus 4 C~~v~~~L~pCl~-----Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~ 78 (93)
T 2ljo_A 4 CGAVTSDLSPCLT-----YLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNI 78 (93)
T ss_dssp SHHHHHHHHHHHH-----HHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhHHH-----HHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCC
Confidence 3344444445533 445554588999999888742 2 2222111 22444444556777785543
No 8
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=9.20 E-value=95 Score=19.12 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=38.9
Q ss_pred hhhhhccCCcchHHHHHHHHHhCccccCcccchHHHhcc-------c-----CcchhhhccC-CCCcchhhHHHhhhhhc
Q 042085 3 ECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIIT-------C-----NYWPAMLTSL-GFTVEEGNILRDYYNAS 69 (90)
Q Consensus 3 ~Cwssl~~v~gC~~EI~~~~l~G~~~igp~CC~Ai~~i~-------~-----~CWP~mfp~~-pf~~~e~~~LK~~C~~~ 69 (90)
.|=..+.++..|..-+. .| ....++||.+++.+. | .|-=...++. ++.+.-+.-|-+.|.-.
T Consensus 3 ~C~~v~~~L~pCl~y~~----~~-~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 3 TCGQVSSSLAPCIPYVR----GG-GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp CHHHHHHHHGGGHHHHH----HC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred ChHHHHHhccCcHHHHc----CC-CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCC
Confidence 45555666777766553 23 237789999999864 3 4553333444 55666566777888654
No 9
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}
Probab=9.13 E-value=94 Score=20.25 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=26.7
Q ss_pred CCcchHHHHHHHHHhCccc-cCc--------ccchHHHhcccCcch
Q 042085 10 ELKSCSNDIVIFFLNSQTD-IGP--------DCCHAIDIITCNYWP 46 (90)
Q Consensus 10 ~v~gC~~EI~~~~l~G~~~-igp--------~CC~Ai~~i~~~CWP 46 (90)
++.+|-.=|.+-...+... .+. .||+-++.++..|=-
T Consensus 17 ~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv~~~CrC 62 (114)
T 2lvf_A 17 MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRC 62 (114)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHCCcCccC
Confidence 4677888787776666554 333 399999999999843
No 10
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=9.07 E-value=82 Score=18.47 Aligned_cols=30 Identities=17% Similarity=0.472 Sum_probs=19.0
Q ss_pred CCcchHHHHHHHHHhCccccCcccchHHHhcccCcc
Q 042085 10 ELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITCNYW 45 (90)
Q Consensus 10 ~v~gC~~EI~~~~l~G~~~igp~CC~Ai~~i~~~CW 45 (90)
++..|...| +|.....++||.+++.. ..|.
T Consensus 7 ~L~pC~~~v-----~~~~~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 7 QLTVCTGAI-----AGGARPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp THHHHHHHH-----TTCCSTTHHHHHHHHHH-HHHH
T ss_pred hcccCHHHH-----cCCCCCCHHHHHhhCCC-CCCC
Confidence 344565544 33334888999999975 5564
Done!