Query 042085
Match_columns 90
No_of_seqs 93 out of 95
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 04:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042085.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042085hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 24.7 10 0.00074 22.3 0.7 63 3-70 3-79 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 21.6 13 0.00093 21.8 0.7 63 3-70 2-77 (91)
3 d1k8rb_ d.15.1.5 (B:) Protein 15.0 33 0.0024 20.9 1.5 17 8-24 14-30 (95)
4 d1hssa_ a.52.1.2 (A:) 0.19 alp 10.1 46 0.0034 21.0 1.1 37 9-46 11-50 (120)
5 d1bu2a2 a.74.1.1 (A:149-250) V 8.2 40 0.0029 20.5 0.1 16 34-50 12-27 (102)
6 d1gvda_ a.4.1.3 (A:) c-Myb, DN 6.5 75 0.0055 16.3 0.8 18 51-68 3-20 (52)
7 d1gv2a2 a.4.1.3 (A:144-190) c- 6.4 79 0.0058 16.0 0.8 17 52-68 2-18 (47)
8 d1kyqa2 e.37.1.1 (A:151-273) B 6.1 87 0.0064 19.2 1.0 17 51-67 107-123 (123)
9 d1q8da_ a.228.1.1 (A:) GDNF re 5.5 21 0.0015 22.1 -2.4 25 29-53 71-98 (108)
10 d1dsqa_ g.40.1.1 (A:) Nucleic 5.4 77 0.0056 14.9 0.3 11 23-33 7-18 (26)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=24.70 E-value=10 Score=22.34 Aligned_cols=63 Identities=13% Similarity=0.291 Sum_probs=37.9
Q ss_pred hhhhhccCCcchHHHHHHHHHhCccc-cCcccchHHHhccc------------Ccchhhhc-cCCCCcchhhHHHhhhhh
Q 042085 3 ECWNSLMELKSCSNDIVIFFLNSQTD-IGPDCCHAIDIITC------------NYWPAMLT-SLGFTVEEGNILRDYYNA 68 (90)
Q Consensus 3 ~Cwssl~~v~gC~~EI~~~~l~G~~~-igp~CC~Ai~~i~~------------~CWP~mfp-~~pf~~~e~~~LK~~C~~ 68 (90)
+|=..+.++-.|.. |++|... -++.||.+++.+.. +|.-.... ..|+.+.-..-|=..|.-
T Consensus 3 ~C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 77 (93)
T d1fk5a_ 3 SCGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp CHHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCC
Confidence 34455555555643 5566655 78899999998753 33433322 235666666667788864
Q ss_pred cC
Q 042085 69 SS 70 (90)
Q Consensus 69 ~~ 70 (90)
..
T Consensus 78 ~l 79 (93)
T d1fk5a_ 78 SI 79 (93)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=21.64 E-value=13 Score=21.83 Aligned_cols=63 Identities=11% Similarity=0.326 Sum_probs=37.8
Q ss_pred hhhhhccCCcchHHHHHHHHHhCccccCcccchHHHhccc------------Ccchhhhcc-CCCCcchhhHHHhhhhhc
Q 042085 3 ECWNSLMELKSCSNDIVIFFLNSQTDIGPDCCHAIDIITC------------NYWPAMLTS-LGFTVEEGNILRDYYNAS 69 (90)
Q Consensus 3 ~Cwssl~~v~gC~~EI~~~~l~G~~~igp~CC~Ai~~i~~------------~CWP~mfp~-~pf~~~e~~~LK~~C~~~ 69 (90)
+|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-.+-.. .++...-..-|=+.|.-.
T Consensus 2 ~C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 2 NCGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp CHHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 35555556666643 456665599999999987752 234333222 245555566777788654
Q ss_pred C
Q 042085 70 S 70 (90)
Q Consensus 70 ~ 70 (90)
.
T Consensus 77 ~ 77 (91)
T d1mida_ 77 V 77 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 3
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=14.98 E-value=33 Score=20.88 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=13.2
Q ss_pred ccCCcchHHHHHHHHHh
Q 042085 8 LMELKSCSNDIVIFFLN 24 (90)
Q Consensus 8 l~~v~gC~~EI~~~~l~ 24 (90)
..|+.||.+||+.-+|.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 57899999998775543
No 4
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=10.11 E-value=46 Score=20.95 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=26.4
Q ss_pred cCCcchHHHHHHHHHhCcc--c-cCcccchHHHhcccCcch
Q 042085 9 MELKSCSNDIVIFFLNSQT--D-IGPDCCHAIDIITCNYWP 46 (90)
Q Consensus 9 ~~v~gC~~EI~~~~l~G~~--~-igp~CC~Ai~~i~~~CWP 46 (90)
.-+++|-..+.+- -.|.. . +...||+-+..|.+.|+=
T Consensus 11 ~pL~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 11 PALPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp SCCTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred CccHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 3467888877554 33432 2 668899999999999963
No 5
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=8.17 E-value=40 Score=20.54 Aligned_cols=16 Identities=31% Similarity=0.958 Sum_probs=12.7
Q ss_pred chHHHhcccCcchhhhc
Q 042085 34 CHAIDIITCNYWPAMLT 50 (90)
Q Consensus 34 C~Ai~~i~~~CWP~mfp 50 (90)
|+|.. |-.+=||++|-
T Consensus 12 c~alk-ipe~~wpql~e 27 (102)
T d1bu2a2 12 CNALK-IPEDLWPQLYE 27 (102)
T ss_dssp HHHTT-CCTTSHHHHHH
T ss_pred hhhcc-CcHHHhHHHHH
Confidence 78877 67789999874
No 6
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.48 E-value=75 Score=16.30 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=14.4
Q ss_pred cCCCCcchhhHHHhhhhh
Q 042085 51 SLGFTVEEGNILRDYYNA 68 (90)
Q Consensus 51 ~~pf~~~e~~~LK~~C~~ 68 (90)
..|++++|-++|+..-.+
T Consensus 3 rg~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CCSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 358999999999987655
No 7
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.42 E-value=79 Score=15.96 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.2
Q ss_pred CCCCcchhhHHHhhhhh
Q 042085 52 LGFTVEEGNILRDYYNA 68 (90)
Q Consensus 52 ~pf~~~e~~~LK~~C~~ 68 (90)
.||+++|-++|...-..
T Consensus 2 ~~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48899999888876554
No 8
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.06 E-value=87 Score=19.21 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=13.7
Q ss_pred cCCCCcchhhHHHhhhh
Q 042085 51 SLGFTVEEGNILRDYYN 67 (90)
Q Consensus 51 ~~pf~~~e~~~LK~~C~ 67 (90)
..|-+|++.+++++||+
T Consensus 107 ~~~~~pp~~~~~~~~~~ 123 (123)
T d1kyqa2 107 CSLQFPPRERLLSEYCS 123 (123)
T ss_dssp SCCCCCCHHHHHHHSBC
T ss_pred cCCCCCChhHHHHHhhC
Confidence 34777889999999985
No 9
>d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.46 E-value=21 Score=22.13 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=14.0
Q ss_pred cCccc-chHHHhcccCc--chhhhccCC
Q 042085 29 IGPDC-CHAIDIITCNY--WPAMLTSLG 53 (90)
Q Consensus 29 igp~C-C~Ai~~i~~~C--WP~mfp~~p 53 (90)
|++-| |++...-..+| |-.||..||
T Consensus 71 v~~~CtC~~sgn~~eeC~~f~~~f~~Np 98 (108)
T d1q8da_ 71 VAPWCDCSNSGNDLEDCLKFLNFFKDNT 98 (108)
T ss_dssp CCCSCBCTTCGGGHHHHHHHHHHHHSCH
T ss_pred cCCcccCCCCCCcHHHHHHHHHHHhcCh
Confidence 34445 55544444456 667777666
No 10
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=5.42 E-value=77 Score=14.88 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=6.9
Q ss_pred HhCccc-cCccc
Q 042085 23 LNSQTD-IGPDC 33 (90)
Q Consensus 23 l~G~~~-igp~C 33 (90)
.-|+++ |.++|
T Consensus 7 scgktghikkdc 18 (26)
T d1dsqa_ 7 SCGKTGHIKRDC 18 (26)
T ss_dssp TTCCBSSCTTTT
T ss_pred ecCCcccchhhh
Confidence 346666 77766
Done!