BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042087
VYGLDINPRAIKISWIKLYLNALHESFSKLFCHCHCKRSFVLRGYLWGYERRVEFDESDL
LAYCRHHDIQLEGIVGCRPQVLNPNSNAMSKIITENASEEFLYSLSNYCGLQVGRYSK

High Scoring Gene Products

Symbol, full name Information P value
MMT
methionine S-methyltransferase 		protein from Arabidopsis thaliana 4.0e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042087
        (118 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2155466 - symbol:MMT "methionine S-methyltrans...   326  4.0e-28   1


>TAIR|locus:2155466 [details] [associations]
            symbol:MMT "methionine S-methyltransferase" species:3702
            "Arabidopsis thaliana" [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008168
            "methyltransferase activity" evidence=IEA] [GO:0008757
            "S-adenosylmethionine-dependent methyltransferase activity"
            evidence=ISS;IMP] [GO:0009058 "biosynthetic process" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0030170
            "pyridoxal phosphate binding" evidence=IEA] [GO:0001887 "selenium
            compound metabolic process" evidence=IMP] [GO:0046500
            "S-adenosylmethionine metabolic process" evidence=IMP] [GO:0005829
            "cytosol" evidence=IDA] InterPro:IPR004839 InterPro:IPR015421
            InterPro:IPR015422 InterPro:IPR025779 Pfam:PF00155 GO:GO:0005829
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030170 GO:GO:0009058
            Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
            SUPFAM:SSF53383 GO:GO:0001887 GO:GO:0046500 GO:GO:0008757
            EMBL:AF137380 EMBL:AB025612 EMBL:AY094459 EMBL:BT002664
            IPI:IPI00522742 PIR:T52306 RefSeq:NP_199792.1 UniGene:At.25276
            ProteinModelPortal:Q9LTB2 SMR:Q9LTB2 STRING:Q9LTB2 PaxDb:Q9LTB2
            PRIDE:Q9LTB2 EnsemblPlants:AT5G49810.1 GeneID:835044
            KEGG:ath:AT5G49810 GeneFarm:4078 TAIR:At5g49810 eggNOG:NOG269325
            HOGENOM:HOG000029922 InParanoid:Q9LTB2 KO:K08247 OMA:YLNALDD
            PhylomeDB:Q9LTB2 ProtClustDB:PLN02672 Genevestigator:Q9LTB2
            GermOnline:AT5G49810 GO:GO:0030732 Uniprot:Q9LTB2
        Length = 1071

 Score = 326 (119.8 bits), Expect = 4.0e-28, P = 4.0e-28
 Identities = 70/112 (62%), Positives = 82/112 (73%)

Query:     1 VYGLDINPRAIKISWIKLYLNALHESFSKLFCHCHCKRSFVLRGYLWGYERRVEFDESDL 60
             VYGLDINPRA+KISWI LYLNAL ++   ++     ++  +L         RVEF ESDL
Sbjct:   141 VYGLDINPRAVKISWINLYLNALDDNGEPVYDE---EKKTLLD--------RVEFYESDL 189

Query:    61 LAYCRHHDIQLEGIVGCRPQVLNPNSNAMSKIITENASEEFLYSLSNYCGLQ 112
             L YCR + IQLE IVGC PQ+LNPN  AMSK+ITENASEEFL+SLSNYC LQ
Sbjct:   190 LGYCRDNKIQLERIVGCIPQILNPNPEAMSKLITENASEEFLHSLSNYCALQ 241


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      118       118   0.00091  102 3  11 22  0.44    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  140 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.21u 0.18s 12.39t   Elapsed:  00:00:00
  Total cpu time:  12.21u 0.18s 12.39t   Elapsed:  00:00:00
  Start:  Thu May  9 15:23:59 2013   End:  Thu May  9 15:23:59 2013

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