BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042087
         (118 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LTB2|MMT1_ARATH Methionine S-methyltransferase OS=Arabidopsis thaliana GN=MMT1 PE=2
           SV=1
          Length = 1071

 Score =  138 bits (348), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 82/112 (73%), Gaps = 11/112 (9%)

Query: 1   VYGLDINPRAIKISWIKLYLNALHESFSKLFCHCHCKRSFVLRGYLWGYERRVEFDESDL 60
           VYGLDINPRA+KISWI LYLNAL ++   ++     K++ +          RVEF ESDL
Sbjct: 141 VYGLDINPRAVKISWINLYLNALDDNGEPVYDEE--KKTLL---------DRVEFYESDL 189

Query: 61  LAYCRHHDIQLEGIVGCRPQVLNPNSNAMSKIITENASEEFLYSLSNYCGLQ 112
           L YCR + IQLE IVGC PQ+LNPN  AMSK+ITENASEEFL+SLSNYC LQ
Sbjct: 190 LGYCRDNKIQLERIVGCIPQILNPNPEAMSKLITENASEEFLHSLSNYCALQ 241


>sp|Q9SWR3|MMT1_WOLBI Methionine S-methyltransferase OS=Wollastonia biflora GN=MMT1 PE=1
           SV=1
          Length = 1088

 Score =  136 bits (342), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 81/112 (72%), Gaps = 11/112 (9%)

Query: 1   VYGLDINPRAIKISWIKLYLNALHESFSKLFCHCHCKRSFVLRGYLWGYERRVEFDESDL 60
           VYGLDINPRA+KISWI LYLNA  E    ++     +   +L         RVEF ESDL
Sbjct: 150 VYGLDINPRAVKISWINLYLNAFDEDGQPVY---DSESKTLLD--------RVEFYESDL 198

Query: 61  LAYCRHHDIQLEGIVGCRPQVLNPNSNAMSKIITENASEEFLYSLSNYCGLQ 112
           L+YCR + I+LE IVGC PQ+LNPN +AMSK++TENASEEFL+SLSNYC LQ
Sbjct: 199 LSYCRDNHIELERIVGCIPQILNPNPDAMSKLVTENASEEFLHSLSNYCALQ 250


>sp|Q8W519|MMT1_MAIZE Methionine S-methyltransferase OS=Zea mays GN=MMT1 PE=2 SV=2
          Length = 1091

 Score =  133 bits (334), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/112 (58%), Positives = 79/112 (70%), Gaps = 11/112 (9%)

Query: 1   VYGLDINPRAIKISWIKLYLNALHESFSKLFCHCHCKRSFVLRGYLWGYERRVEFDESDL 60
           VYGLDINPRA+KI+WI LYLNAL +    ++            G       RVEF ESDL
Sbjct: 150 VYGLDINPRAVKIAWINLYLNALDDDGLPIY-----------DGEGKTLLDRVEFYESDL 198

Query: 61  LAYCRHHDIQLEGIVGCRPQVLNPNSNAMSKIITENASEEFLYSLSNYCGLQ 112
           L+YCR + I+L+ IVGC PQ+LNPN  AMSKI+TEN+SEEFLY+LSNYC LQ
Sbjct: 199 LSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYALSNYCALQ 250


>sp|Q9MBC2|MMT1_HORVU Methionine S-methyltransferase OS=Hordeum vulgare GN=MMT1 PE=1 SV=1
          Length = 1088

 Score =  132 bits (333), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/112 (59%), Positives = 80/112 (71%), Gaps = 11/112 (9%)

Query: 1   VYGLDINPRAIKISWIKLYLNALHESFSKLFCHCHCKRSFVLRGYLWGYERRVEFDESDL 60
           VYGLDINPR IKI+WI LYLNAL +    ++     +   +L         RVEF ESDL
Sbjct: 148 VYGLDINPRPIKIAWINLYLNALDDDGLPIY---DAEGKTLLD--------RVEFYESDL 196

Query: 61  LAYCRHHDIQLEGIVGCRPQVLNPNSNAMSKIITENASEEFLYSLSNYCGLQ 112
           L+YCR + I+L+ IVGC PQ+LNPN  AMSKI+TEN+SEEFLYSLSNYC LQ
Sbjct: 197 LSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSNYCALQ 248


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,820,802
Number of Sequences: 539616
Number of extensions: 1561080
Number of successful extensions: 4514
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4506
Number of HSP's gapped (non-prelim): 6
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)