BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042088
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 140/311 (45%), Gaps = 73/311 (23%)
Query: 13 SSVSSIPSNYIRPASNRPNLDGVYLDDC------IPQIDLRYLNGSN---RSDVVKQTGQ 63
S + SIP YIRP +++ V+L++ +P IDL+ + + R + +++ +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 64 ACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFP-------------------------- 97
A D+G N+GIP ++M+++ +FF
Sbjct: 73 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 98 -------EDYVRLHCYPLE------------DYMH---EWAT----------NPQSFSLG 125
EDY YP E DY+ E+A S LG
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 126 LERDYPIKALGNHGQ---HMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVL 182
LE D K +G + M INY P CPQPEL G+ TD + +T +L + VPGLQ+
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 252
Query: 183 INGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYC--PSPD 240
G+WV + + ++IG +++LSN +YKS+LHR +VN K RIS ++C P
Sbjct: 253 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW-AVFCEPPKDK 311
Query: 241 AMIGPAPHLIN 251
++ P P +++
Sbjct: 312 IVLKPLPEMVS 322
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 140/311 (45%), Gaps = 73/311 (23%)
Query: 13 SSVSSIPSNYIRPASNRPNLDGVYLDDC------IPQIDLRYLNGSN---RSDVVKQTGQ 63
S + SIP YIRP +++ V+L++ +P IDL+ + + R + +++ +
Sbjct: 12 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 71
Query: 64 ACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFP-------------------------- 97
A D+G N+GIP ++M+++ +FF
Sbjct: 72 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 131
Query: 98 -------EDYVRLHCYPLE------------DYMH---EWAT----------NPQSFSLG 125
EDY YP E DY+ E+A S LG
Sbjct: 132 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 191
Query: 126 LERDYPIKALGNHGQ---HMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVL 182
LE D K +G + M INY P CPQPEL G+ TD + +T +L + VPGLQ+
Sbjct: 192 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 251
Query: 183 INGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYC--PSPD 240
G+WV + + ++IG +++LSN +YKS+LHR +VN K RIS ++C P
Sbjct: 252 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISW-AVFCEPPKDK 310
Query: 241 AMIGPAPHLIN 251
++ P P +++
Sbjct: 311 IVLKPLPEMVS 321
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 136/311 (43%), Gaps = 73/311 (23%)
Query: 13 SSVSSIPSNYIRPASNRPNLDGVYLDDC------IPQIDLRYLNGSN---RSDVVKQTGQ 63
S + SIP YIRP +++ V+L++ +P IDL+ + + R + +++ +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 64 ACQDYGFFRTENNGIPEEVMDKMLCLSRQFFHFP-------------------------- 97
A D+G N+GIP ++ +++ +FF
Sbjct: 73 ASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 98 -------EDYVRLHCYPLE------------DYMH---EWAT----------NPQSFSLG 125
EDY YP E DY+ E+A S LG
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 126 LERDYPIKALGNHGQ---HMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVL 182
LE D K +G + INY P CPQPEL G+ TD + +T +L + VPGLQ+
Sbjct: 193 LEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLF 252
Query: 183 INGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYC--PSPD 240
G+WV + + +IG +++LSN +YKS+LHR +VN K RIS ++C P
Sbjct: 253 YEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISW-AVFCEPPKDK 311
Query: 241 AMIGPAPHLIN 251
++ P P ++
Sbjct: 312 IVLKPLPEXVS 322
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 119/265 (44%), Gaps = 55/265 (20%)
Query: 41 IPQIDLRYLNGSNRSDVVKQTGQACQDYGFFRTENNGIPEEVMDKM---------LCLSR 91
P I L +NG R+ + AC+++GFF N+GIP EV D + C +
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQ 63
Query: 92 QFFHFP-----------------EDYVRLHCYPLE------DYMHEWATNPQSFS----- 123
+F E L P+ D E+ + F+
Sbjct: 64 RFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEK 123
Query: 124 ------------LGLERDYPIKAL-GNHGQHMAI---NYCPLCPQPELTYGLPCQTDPNV 167
LGLE+ Y A G+ G + NY P CP+P+L GL TD
Sbjct: 124 LAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPP-CPKPDLIKGLRAHTDAGG 182
Query: 168 ITILLQDD-VPGLQVLINGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNK 226
I +L QDD V GLQ+L +G+W+ V P + VN+G Q++V++N +YKSV HR I +
Sbjct: 183 IILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDG 242
Query: 227 ERISIPTIYCPSPDAMIGPAPHLIN 251
R S+ + Y P DA+I PAP L+
Sbjct: 243 ARXSLASFYNPGSDAVIYPAPALVE 267
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 124 LGLERDYPIKALGNHGQHMAINYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVL- 182
L LERD+ + + + + + P P+ D N IT+LL + GL+VL
Sbjct: 153 LKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLD 212
Query: 183 INGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCP 237
+G+W+ +NP +NIG ++ L+N+ S +HR +VN ER +P P
Sbjct: 213 RDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 161 CQTDPNVITILLQDDVPGLQVLI-NGRWVAVNPISRTFTVNIGGQIQVLSNDRYKSVLHR 219
D N+IT+L + PGLQV +G W+ V +NIG +Q S+ + S HR
Sbjct: 173 AHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHR 232
Query: 220 AI----VNCNKERISIPTIYCPSPDAMI 243
I + K RIS+P P P ++
Sbjct: 233 VINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 144 INYCPLCPQPELT---------YGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPIS 194
I Y L P PE D ++IT+L Q +V LQV + +
Sbjct: 187 IRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADD 246
Query: 195 RTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGP 245
+ +N G + L+N+ YK+ +HR + N ER S+P D++I P
Sbjct: 247 TGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 144 INYCPLCPQPELT---------YGLPCQTDPNVITILLQDDVPGLQVLINGRWVAVNPIS 194
I Y L P PE D ++IT+L Q +V LQV + +
Sbjct: 187 IRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADD 246
Query: 195 RTFTVNIGGQIQVLSNDRYKSVLHRAIVNCNKERISIPTIYCPSPDAMIGP 245
+ +N G + L+N+ YK+ +HR + N ER S+P D++I P
Sbjct: 247 TGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDP 296
>pdb|2ERW|A Chain A, Crystal Structure Of Infestin 4, A Factor Xiia Inhibitor
Length = 56
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 145 NYCPLCPQPELTYGLPCQTDPNVITILLQDDVPGLQVLINGR 186
NY P+C TYG PC ++ Q VPGL+++ GR
Sbjct: 11 NYVPVCGSDGKTYGNPC-----MLNCAAQTKVPGLKLVHEGR 47
>pdb|2BP1|A Chain A, Structure Of The Aflatoxin Aldehyde Reductase In Complex
With Nadph
pdb|2BP1|B Chain B, Structure Of The Aflatoxin Aldehyde Reductase In Complex
With Nadph
pdb|2BP1|C Chain C, Structure Of The Aflatoxin Aldehyde Reductase In Complex
With Nadph
pdb|2BP1|D Chain D, Structure Of The Aflatoxin Aldehyde Reductase In Complex
With Nadph
Length = 360
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 10 NVASSVSSIPSNYIRPASNRPNLDGVYLDDCIPQIDLRYLNGSNRSDVVKQTGQACQ 66
+A+ + ++P S R L+ PQ+DL YL+ + V++T ACQ
Sbjct: 102 KIATKANPWDGKSLKPDSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLHACQ 158
>pdb|1LIA|A Chain A, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
pdb|1LIA|K Chain K, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
Length = 164
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 51 GSNRSDVVKQTGQAC-QDYGFFRTENNGIPEEVMDKMLCLSRQFFHFPEDYVRLHCYPL 108
GSN VVK+ G AC YG+ +N G E +K+ R H Y+RL Y L
Sbjct: 45 GSNHEAVVKEAGDACFSKYGY--NKNPGEAGENQEKINKCYRDIDH----YMRLINYTL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,324,731
Number of Sequences: 62578
Number of extensions: 403263
Number of successful extensions: 728
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 20
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)