BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042089
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 183/594 (30%), Positives = 272/594 (45%), Gaps = 78/594 (13%)
Query: 4 KNLTELDLRENNLEGQLPW--RLSDLTGLKVFDISSNQLSGNLPSVIAN---LTSLEYLV 58
+LT LDL N+L G + L +GLK ++SSN L + P ++ L SLE L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP 118
LS N+ G + + + E L+ L +S N + L+ L + + +
Sbjct: 158 LSANSISGANVVGWVLSDGCGE-LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
FL L+ LD+S NKL G+F + + T L++L +S+N F G +P + L++
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQY 273
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG------------------ 220
L ++ N G +P + L +D+S N+F G +P G
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 221 -------EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273
+M+ L +LDLS N+FSG+L + N ASL LD+S NNF G I P NL Q
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQ 390
Query: 274 -----LRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328
L+ LYL+NN FTGKI L N LV L +S N LSG IP +G+ S L L +
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 329 KNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPXXX 387
N LEG IP ++ + LE L L N L G I S L N +++ + L N L+G+IP
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP--- 507
Query: 388 XXXXXXXXXXXXXNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLS 447
K+ GR+ + L +L L N G IP L + L LDL+
Sbjct: 508 --------------KWIGRLEN-------LAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 448 HNKLNGSIPSCFANVLFWREGN--GDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDD 505
N NG+IP+ +F + G + +Y + G++ + L+ R +
Sbjct: 547 TNLFNGTIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602
Query: 506 YATLHQRAQVQFVTKNRYEFYNGSSLN---YMSGMDLSYNELTGEIPSEIGELP 556
+T Y + + + M +D+SYN L+G IP EIG +P
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 156/508 (30%), Positives = 227/508 (44%), Gaps = 68/508 (13%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65
L LD+ N L G +S T LK+ +ISSNQ G +P + L SL+YL L++N F
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282
Query: 66 GEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-------QLKVLQLPNCSLKVIP 118
GE P L + L L +S N + +P F + L N S ++
Sbjct: 283 GEIPDFL---SGACDTLTGLDLSGNHFYGA---VPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG-----ILQLPK--V 171
LL LK LDLS N+ G P L + +L L LS+N+FSG + Q PK +
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 172 KHDFLRH-------------------LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFE 212
+ +L++ L +S N L GT+P ++G+ L KL + + N E
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 455
Query: 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT 272
G IP + +K L L L N +G++ + ++ C +L ++ +S N G I L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI--------GNFSYLDV 324
L L L NN F+G I A L + L+ LD++ NL +G IP + NF
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 325 LLMSKN-------HLEGNIPVQINNFRQLEILYLSE-------NRLFGSIAS--FLNLSS 368
+ KN H GN+ ++ R ++ LS +R++G S F N S
Sbjct: 575 YVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 369 IMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELRVLLLRGNYLQ 428
+M L + N LSG IP N G IP ++ L +L L N L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 429 GEIPIALCQLQKLRILDLSHNKLNGSIP 456
G IP A+ L L +DLS+N L+G IP
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 130/314 (41%), Gaps = 60/314 (19%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L +L L N LEG++P L + L+ + N L+G +PS ++N T+L ++ LS+
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N GE P + LE L +LK+SNN F IP+ L
Sbjct: 500 NRLTGEIPKWI----GRLENLAILKLSNN-SFSGN--------------------IPAEL 534
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEV---------------LRLSNNSFSGIL 166
+L +LDL++N G P + + + + ++ + +L
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 167 QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVL------------QKLMLIDISKNNFEGN 214
+ ++ + L L N P N+ + + +M +D+S N G
Sbjct: 595 EFQGIRSEQLNRLSTRN-------PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 215 IPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQL 274
IP IG M LF+L+L N SG + V L LD+S N G I LT L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 275 RGLYLKNNHFTGKI 288
+ L NN+ +G I
Sbjct: 707 TEIDLSNNNLSGPI 720
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 278 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW--IGNFSYLDVLLMSKNHLEGN 335
+L N+H G + +G S L LD+S N LSG + +G+ S L L +S N L+
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 336 IPVQINN---FRQLEILYLSENRLFGSIASFLNLSS----IMHLYLQKNALSGQIPXXXX 388
P +++ LE+L LS N + G+ LS + HL + N +SG +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 389 XXXXXXXXXXXXNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
N F IP + S L+ L + GN L G+ A+ +L++L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 449 NKLNGSIP 456
N+ G IP
Sbjct: 257 NQFVGPIP 264
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 48/234 (20%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
NL + L N L G++P + L L + +S+N SGN+P+ + + SL +L L+ N F
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 65 QGEFPLSLLTNHSNLEV-----LRLLKVSNNLRFKTE----------NWIPTFQLKVLQL 109
G P ++ + R + + N+ K E I + QL L
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKND-GMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 110 PN-CSLK-------VIPSFLLHQYNLKFLDLSSNKLVGNFPTWL---------------- 145
N C++ P+F + ++ FLD+S N L G P +
Sbjct: 610 RNPCNITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 146 -------MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQ 192
+ + L +L LS+N G + L +D+SNNNL G +P+
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSV 47
L+ L LDL N L+G++P +S LT L D+S+N LSG +P +
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 33/127 (25%)
Query: 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPH 409
+LS + + GS++ F +S+ L L +N+LSG +
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT---------------------- 120
Query: 410 QINKHSELRVLLLRGNYLQ--GEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFW-- 465
+ S L+ L + N L G++ L +L L +LDLS N ++G ANV+ W
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG------ANVVGWVL 173
Query: 466 REGNGDL 472
+G G+L
Sbjct: 174 SDGCGEL 180
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 183/594 (30%), Positives = 271/594 (45%), Gaps = 78/594 (13%)
Query: 4 KNLTELDLRENNLEGQLPW--RLSDLTGLKVFDISSNQLSGNLPSVIAN---LTSLEYLV 58
+LT LDL N+L G + L +GLK ++SSN L + P ++ L SLE L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP 118
LS N+ G + + + E L+ L +S N + L+ L + + +
Sbjct: 155 LSANSISGANVVGWVLSDGCGE-LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
FL L+ LD+S NKL G+F + + T L++L +S+N F G +P + L++
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQY 270
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG------------------ 220
L ++ N G +P + L +D+S N+F G +P G
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 221 -------EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273
+M+ L +LDLS N+FSG+L + N ASL LD+S NNF G I P NL Q
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQ 387
Query: 274 -----LRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328
L+ LYL+NN FTGKI L N LV L +S N LSG IP +G+ S L L +
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 329 KNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPXXX 387
N LEG IP ++ + LE L L N L G I S L N +++ + L N L+G+IP
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP--- 504
Query: 388 XXXXXXXXXXXXXNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLS 447
K+ GR+ L +L L N G IP L + L LDL+
Sbjct: 505 --------------KWIGRL-------ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 448 HNKLNGSIPSCFANVLFWREGN--GDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDD 505
N NG+IP+ +F + G + +Y + G++ + L+ R +
Sbjct: 544 TNLFNGTIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 599
Query: 506 YATLHQRAQVQFVTKNRYEFYNGSSLN---YMSGMDLSYNELTGEIPSEIGELP 556
+T Y + + + M +D+SYN L+G IP EIG +P
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 156/508 (30%), Positives = 227/508 (44%), Gaps = 68/508 (13%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65
L LD+ N L G +S T LK+ +ISSNQ G +P + L SL+YL L++N F
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 279
Query: 66 GEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-------QLKVLQLPNCSLKVIP 118
GE P L + L L +S N + +P F + L N S ++
Sbjct: 280 GEIPDFL---SGACDTLTGLDLSGNHFYGA---VPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG-----ILQLPK--V 171
LL LK LDLS N+ G P L + +L L LS+N+FSG + Q PK +
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 172 KHDFLRH-------------------LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFE 212
+ +L++ L +S N L GT+P ++G+ L KL + + N E
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 452
Query: 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT 272
G IP + +K L L L N +G++ + ++ C +L ++ +S N G I L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI--------GNFSYLDV 324
L L L NN F+G I A L + L+ LD++ NL +G IP + NF
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 325 LLMSKN-------HLEGNIPVQINNFRQLEILYLSE-------NRLFGSIAS--FLNLSS 368
+ KN H GN+ ++ R ++ LS +R++G S F N S
Sbjct: 572 YVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 369 IMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELRVLLLRGNYLQ 428
+M L + N LSG IP N G IP ++ L +L L N L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 429 GEIPIALCQLQKLRILDLSHNKLNGSIP 456
G IP A+ L L +DLS+N L+G IP
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 130/314 (41%), Gaps = 60/314 (19%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L +L L N LEG++P L + L+ + N L+G +PS ++N T+L ++ LS+
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N GE P + LE L +LK+SNN F IP+ L
Sbjct: 497 NRLTGEIPKWI----GRLENLAILKLSNN-SFSGN--------------------IPAEL 531
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEV---------------LRLSNNSFSGIL 166
+L +LDL++N G P + + + + ++ + +L
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 167 QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVL------------QKLMLIDISKNNFEGN 214
+ ++ + L L N P N+ + + +M +D+S N G
Sbjct: 592 EFQGIRSEQLNRLSTRN-------PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 215 IPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQL 274
IP IG M LF+L+L N SG + V L LD+S N G I LT L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 275 RGLYLKNNHFTGKI 288
+ L NN+ +G I
Sbjct: 704 TEIDLSNNNLSGPI 717
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 278 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW--IGNFSYLDVLLMSKNHLEGN 335
+L N+H G + +G S L LD+S N LSG + +G+ S L L +S N L+
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 336 IPVQINN---FRQLEILYLSENRLFGSIASFLNLSS----IMHLYLQKNALSGQIPXXXX 388
P +++ LE+L LS N + G+ LS + HL + N +SG +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 389 XXXXXXXXXXXXNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
N F IP + S L+ L + GN L G+ A+ +L++L++S
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 449 NKLNGSIP 456
N+ G IP
Sbjct: 254 NQFVGPIP 261
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 48/234 (20%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
NL + L N L G++P + L L + +S+N SGN+P+ + + SL +L L+ N F
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 65 QGEFPLSLLTNHSNLEV-----LRLLKVSNNLRFKTE----------NWIPTFQLKVLQL 109
G P ++ + R + + N+ K E I + QL L
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKND-GMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 110 PN-CSLK-------VIPSFLLHQYNLKFLDLSSNKLVGNFPTWL---------------- 145
N C++ P+F + ++ FLD+S N L G P +
Sbjct: 607 RNPCNITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 146 -------MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQ 192
+ + L +L LS+N G + L +D+SNNNL G +P+
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSV 47
L+ L LDL N L+G++P +S LT L D+S+N LSG +P +
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 33/127 (25%)
Query: 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPH 409
+LS + + GS++ F +S+ L L +N+LSG +
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT---------------------- 117
Query: 410 QINKHSELRVLLLRGNYLQ--GEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFW-- 465
+ S L+ L + N L G++ L +L L +LDLS N ++G ANV+ W
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG------ANVVGWVL 170
Query: 466 REGNGDL 472
+G G+L
Sbjct: 171 SDGCGEL 177
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 95/215 (44%), Gaps = 8/215 (3%)
Query: 248 ASLEYLDV----SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303
A+L YL+ NN G I P LTQL LY+ + + +G I L LV LD
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL-EILYLSENRLFGSI-A 361
S N LSG +P I + L + N + G IP +F +L + +S NRL G I
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 362 SFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELRVLL 421
+F NL ++ + L +N L G N + ++ L L
Sbjct: 193 TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 422 LRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
LR N + G +P L QL+ L L++S N L G IP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 15/249 (6%)
Query: 117 IPSFLLHQYNLKFLDLSS-NKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ--LPKVKH 173
IPS L + L FL + N LVG P + + T L L +++ + SG + L ++K
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFL-LDLSR 232
L LD S N L GTLP ++ + L L+ I N G IP S G +LF + +SR
Sbjct: 127 --LVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 233 NKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKI-KAG 291
N+ +G + T N +L ++D+S N G + + + ++L N + K G
Sbjct: 184 NRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 292 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351
L S L LD+ NN + G +P + +L L +S N+L G IP Q N ++ ++
Sbjct: 242 L--SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298
Query: 352 SENR-LFGS 359
+ N+ L GS
Sbjct: 299 ANNKCLCGS 307
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 30/243 (12%)
Query: 312 IPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLN-LSSI 369
IP + N YL+ L + N+L G IP I QL LY++ + G+I FL+ + ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 370 MHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSEL-RVLLLRGNYLQ 428
+ L NALSG +P N+ G IP S+L + + N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 429 GEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGD-LYGSGLDIYFQFGGLR 487
G+IP L L +DLS N L G A+VLF + N ++ + + F G
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGD-----ASVLFGSDKNTQKIHLAKNSLAFDLG--- 238
Query: 488 SIGTYYN-STLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTG 546
+G N + LDL +R Y TL Q + L ++ +++S+N L G
Sbjct: 239 KVGLSKNLNGLDLRNNRI-YGTLPQGL---------------TQLKFLHSLNVSFNNLCG 282
Query: 547 EIP 549
EIP
Sbjct: 283 EIP 285
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL L L + N+ G +P LS + L D S N LSG LP I++L +L +
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N G P S S ++ + +S N + K+ P+F
Sbjct: 159 NRISGAIPDSY---GSFSKLFTSMTISRN--------------------RLTGKIPPTF- 194
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVK-HDFLRHLD 180
NL F+DLS N L G+ + L ++ N + + L+ NS + L KV L LD
Sbjct: 195 -ANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLD 250
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
+ NN + GTLPQ + T L+ L +++S NN G IP
Sbjct: 251 LRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIP 285
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 32/195 (16%)
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK--VKHDFLRHLDISN 183
+L+FLDLS N L +F Q++ L+ + SF+G++ + + + L HLD +
Sbjct: 348 SLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISK------------------------NNFEGN-IPYS 218
+NL ++ L+ L+ +DIS N+F+ N +P
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 219 IGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG-HIFPTYMNLTQLRGL 277
E++ L LDLS+ + LS T+ N +SL+ L++S NNF+ FP Y L L+ L
Sbjct: 466 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVL 523
Query: 278 YLKNNHFTGKIKAGL 292
NH K L
Sbjct: 524 DYSLNHIMTSKKQEL 538
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 176/422 (41%), Gaps = 63/422 (14%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 62 NNFQGEFPLSLLTNHS---------------------NLEVLRLLKVSNNLRFKTENWIP 100
N Q + L H + +RL K++ F + N +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 101 TF-----QLKVLQL--------------PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNF 141
T L+V +L +L+ + + + ++ L +LD + ++ F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 142 PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDF-LRHLDISNNNLIGTLPQNMGTVLQK 200
TN+ L + + I ++ ++F +HL++ N G P L+
Sbjct: 279 NCL-----TNVSSFSLVSVT---IERVKDFSYNFGWQHLELVNCKF-GQFP---TLKLKS 326
Query: 201 LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN--KFSGDLSATSVNGCASLEYLDVSEN 258
L + + N +G +S ++ L LDLSRN F G S + G SL+YLD+S N
Sbjct: 327 LKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFN 383
Query: 259 NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLSGHIPCWIG 317
+ ++ L QL L ++++ + + L+ L+ LDIS+
Sbjct: 384 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 318 NFSYLDVLLMSKNHLEGN-IPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQ 375
S L+VL M+ N + N +P R L L LS+ +L S +F +LSS+ L +
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 376 KN 377
N
Sbjct: 503 HN 504
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 91
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ V NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 92 ALGAFSGLSSLQ--KLVAVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 126 --NLKFLDLSSNKLVGNFPTWL 145
NL+ LDLSSNK+ + T L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDL 169
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 17 EGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
E LP ++L L D+S QL P+ +L+SL+ L +S NNF
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 32/195 (16%)
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK--VKHDFLRHLDISN 183
+L+FLDLS N L +F Q++ L+ + SF+G++ + + + L HLD +
Sbjct: 372 SLEFLDLSRNGL--SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISK------------------------NNFEGN-IPYS 218
+NL ++ L+ L+ +DIS N+F+ N +P
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 489
Query: 219 IGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG-HIFPTYMNLTQLRGL 277
E++ L LDLS+ + LS T+ N +SL+ L++S NNF+ FP Y L L+ L
Sbjct: 490 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVL 547
Query: 278 YLKNNHFTGKIKAGL 292
NH K L
Sbjct: 548 DYSLNHIMTSKKQEL 562
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 101/422 (23%), Positives = 178/422 (42%), Gaps = 63/422 (14%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 62 NNFQGEFPLSLLTNHS---------------------NLEVLRLLKVSNNLRFKTENWIP 100
N Q + L H + +RL K++ F + N +
Sbjct: 183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 242
Query: 101 TF-----QLKVLQL--------------PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNF 141
T L+V +L +L+ + + + ++ L +LD + ++ F
Sbjct: 243 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF 302
Query: 142 PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDF-LRHLDISNNNLIGTLPQNMGTVLQK 200
+ N ++ ++ ++ I ++ ++F +HL++ N G P L+
Sbjct: 303 NC--LTNVSSFSLVSVT------IERVKDFSYNFGWQHLELVNCKF-GQFP---TLKLKS 350
Query: 201 LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN--KFSGDLSATSVNGCASLEYLDVSEN 258
L + + N +G +S ++ L LDLSRN F G S + G SL+YLD+S N
Sbjct: 351 LKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDLSFN 407
Query: 259 NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLSGHIPCWIG 317
+ ++ L QL L ++++ + + L+ L+ LDIS+
Sbjct: 408 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466
Query: 318 NFSYLDVLLMSKNHLEGN-IPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQ 375
S L+VL M+ N + N +P R L L LS+ +L S +F +LSS+ L +
Sbjct: 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 376 KN 377
N
Sbjct: 527 HN 528
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 115
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ V NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 116 ALGAFSGLSSLQ--KLVAVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 171
Query: 126 --NLKFLDLSSNKLVGNFPTWL 145
NL+ LDLSSNK+ + T L
Sbjct: 172 LTNLEHLDLSSNKIQSIYCTDL 193
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 17 EGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
E LP ++L L D+S QL P+ +L+SL+ L +S NNF
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 91/214 (42%), Gaps = 38/214 (17%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+LD+ EN + L + DL LK ++ N L + L SLE L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVS-NNLR---FK-------------------TENWI 99
N P L++ L VLRL ++ N +R FK T N +
Sbjct: 163 NLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221
Query: 100 PTFQLKVLQLPNCSLKVIPSFLL-HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLS 158
L L + +C+L +P + H L+FL+LS N P ++ + E+LRL
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN------PISTIEGSMLHELLRLQ 275
Query: 159 NNSFSGILQLPKVKH------DFLRHLDISNNNL 186
G QL V+ ++LR L++S N L
Sbjct: 276 EIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L L E+ L L P+ L L+V ++S NQL+ SV ++ +LE L+L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Query: 62 N 62
N
Sbjct: 330 N 330
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 179/424 (42%), Gaps = 63/424 (14%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 62 NNFQGEFPLSLLTNHS---------------------NLEVLRLLKVSNNLRFKTENWIP 100
N Q + L H + +RL K++ F + N +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 101 TF-----QLKVLQL--------------PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNF 141
T L+V +L +L+ + + + ++ L +LD + ++ F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 142 PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDF-LRHLDISNNNLIGTLPQNMGTVLQK 200
+ N ++ ++ ++ I ++ ++F +HL++ N G P L+
Sbjct: 279 NC--LTNVSSFSLVSVT------IERVKDFSYNFGWQHLELVNCKF-GQFPT---LKLKS 326
Query: 201 LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN--KFSGDLSATSVNGCASLEYLDVSEN 258
L + + N +G +S ++ L LDLSRN F G S + G SL+YLD+S N
Sbjct: 327 LKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFN 383
Query: 259 NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLSGHIPCWIG 317
+ ++ L QL L ++++ + + L+ L+ LDIS+
Sbjct: 384 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 318 NFSYLDVLLMSKNHLEGN-IPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQ 375
S L+VL M+ N + N +P R L L LS+ +L S +F +LSS+ L +
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 376 KNAL 379
N L
Sbjct: 503 SNQL 506
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L+NLT LDL + LE P + L+ L+V +++SNQL + LTSL+ + L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Query: 62 NNFQGEFP 69
N + P
Sbjct: 528 NPWDCSCP 535
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 91
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ V NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 92 ALGAFSGLSSLQ--KLVAVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 126 --NLKFLDLSSNKLVGNFPT 143
NL+ LDLSSNK+ + T
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT 167
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 32/191 (16%)
Query: 130 LDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK--VKHDFLRHLDISNNNLI 187
L LSSN L +F Q++ L+ + SF+G++ + + + L HLD ++NL
Sbjct: 57 LSLSSNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 188 GTLPQNMGTVLQKLMLIDISK------------------------NNFEGN-IPYSIGEM 222
++ L+ L+ +DIS N+F+ N +P E+
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG-HIFPTYMNLTQLRGLYLKN 281
+ L LDLS+ + LS T+ N +SL+ L++S NNF+ FP Y L L+ L
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSL 232
Query: 282 NHFTGKIKAGL 292
NH K L
Sbjct: 233 NHIMTSKKQEL 243
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 50/216 (23%)
Query: 3 LKNLTELDLRENNLEGQLPWRLS-DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L+ L LD + +NL+ + + L L DIS + L+SLE L ++
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N+FQ EN++P ++
Sbjct: 160 NSFQ------------------------------ENFLPDIFTEL--------------- 174
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
NL FLDLS +L PT + ++L+VL +S+N+F + P + L+ LD
Sbjct: 175 ---RNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPY 217
S N+++ + Q + L +++++N+F +
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL NLTELDL N L+ LT LK + NQL V LTSL+Y+ L D
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
Query: 62 NNFQGEFP 69
N + P
Sbjct: 215 NPWDCTCP 222
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL NL EL L EN L+ LT L +++ NQL V LT+L L LS
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 62 NNFQGEFPLSLLTNHSNLEVLRL 84
N Q P + + L+ LRL
Sbjct: 167 NQLQS-LPEGVFDKLTQLKDLRL 188
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 29/64 (45%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL NLT L+L N L+ LT L D+S NQL V LT L+ L L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 62 NNFQ 65
N +
Sbjct: 191 NQLK 194
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L +L+ N + P L++LT L+ DISSN++S SV+A LT+LE L+ ++N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 63 NFQGEFPLSLLTN 75
PL +LTN
Sbjct: 206 QISDITPLGILTN 218
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 118/261 (45%), Gaps = 34/261 (13%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+++ N L P L +LT L +++NQ++ P +ANLT+L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSF- 120
PL LTN + LE L T + I L LQ N S +
Sbjct: 118 QITDIDPLKNLTNLNRLE----------LSSNTISDISALSGLTSLQQLNFSSNQVTDLK 167
Query: 121 -LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
L + L+ LD+SSNK+ ++ TNLE L +NN S I L + + L L
Sbjct: 168 PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN--LDEL 222
Query: 180 DISNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
++ N L IGTL L L +D++ N P S + +L L L N+ S
Sbjct: 223 SLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS- 274
Query: 238 DLSATSVNGCASLEYLDVSEN 258
+ + + G +L L+++EN
Sbjct: 275 --NISPLAGLTALTNLELNEN 293
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 31 KVFDISSNQLSGNLPS-VIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSN 89
K D+ SN+LS +LPS LT L L L+DN Q P + NLE L
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL------- 90
Query: 90 NLRFKTENWIPTFQLKV---------LQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVG 139
+ T+N + + V L+L LK +P + L +L L N+L
Sbjct: 91 ---WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-Q 146
Query: 140 NFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQ 199
+ P + T+L+ LRL NN + + K L+ L + NN L +P+ L+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLE 205
Query: 200 KLMLIDISKNNFE 212
KL ++ + +N ++
Sbjct: 206 KLKMLQLQENPWD 218
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 107/283 (37%), Gaps = 53/283 (18%)
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
S L+A N A + LD+ N + LT+LR LYL +N + AG+
Sbjct: 25 SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKE 83
Query: 296 -HGLVVLDISNNLLSGHIPCWIGNFSY---LDVLLMSKNHLEGNIPVQINNFRQLEILYL 351
L L +++N L +P IG F L L + +N L+ P ++ +L L L
Sbjct: 84 LKNLETLWVTDNKLQA-LP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 352 SENRLFG-SIASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPH- 409
N L F L+S+ L L N L R+P
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLK-------------------------RVPEG 175
Query: 410 QINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLF----W 465
+K +EL+ L L N L+ A L+KL++L L N + C N + W
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD-----CTCNGIIYMAKW 230
Query: 466 REGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYAT 508
+ D GL GG+ + G L ++ D A+
Sbjct: 231 LKKKAD---EGL------GGVDTAGCEKGGKAVLEITEKDAAS 264
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+LKNL L + +N L+ LP + D L L + NQL P V +LT L YL L
Sbjct: 83 ELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPS 119
N Q P + ++L+ LRL +N L+ E +LK L+L N LK +P
Sbjct: 142 YNELQS-LPKGVFDKLTSLKELRL--YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 120 FLLHQ-YNLKFLDLSSN 135
LK L L N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L +L N + P L++LT L+ DISSN++S SV+A LT+LE L+ ++N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 63 NFQGEFPLSLLTN 75
PL +LTN
Sbjct: 206 QISDITPLGILTN 218
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 34/261 (13%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+++ N L P L +LT L +++NQ++ P +ANLT+L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSF- 120
PL LTN + LE L T + I L LQ + S +
Sbjct: 118 QITDIDPLKNLTNLNRLE----------LSSNTISDISALSGLTSLQQLSFSSNQVTDLK 167
Query: 121 -LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
L + L+ LD+SSNK+ ++ TNLE L +NN S I L + + L L
Sbjct: 168 PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN--LDEL 222
Query: 180 DISNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
++ N L IGTL L L +D++ N P S + +L L L N+ S
Sbjct: 223 SLNGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS- 274
Query: 238 DLSATSVNGCASLEYLDVSEN 258
+ + + G +L L+++EN
Sbjct: 275 --NISPLAGLTALTNLELNEN 293
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L +L N + P L++LT L+ DISSN++S SV+A LT+LE L+ ++N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 63 NFQGEFPLSLLTN 75
PL +LTN
Sbjct: 206 QISDITPLGILTN 218
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 40/301 (13%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+++ N L P L +LT L +++NQ++ P +ANLT+L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 63 NFQGEFPLSLLTNHSNLEV----------------LRLLKVSNNLRFKTENWIPTFQLKV 106
PL LTN + LE+ L+ L S+N + + P L
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN---QVTDLKPLANLTT 174
Query: 107 LQLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164
L+ + S + S L NL+ L ++N++ P ++ TNL+ L L+ N
Sbjct: 175 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 231
Query: 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKE 224
I L + + L LD++NN + P + L KL + + N P + +
Sbjct: 232 IGTLASLTN--LTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHF 284
L L+L+ N+ D+S ++ +L YL + NN I P +LT+L+ L+ NN
Sbjct: 285 LTNLELNENQLE-DISP--ISNLKNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFSNNKV 339
Query: 285 T 285
+
Sbjct: 340 S 340
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTN 75
L++LT L+ DISSN++S SV+A LT+LE L+ ++N PL +LTN
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN 217
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+++ N L P L +LT L +++NQ++ P +ANLT+L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL LTN L L++S+N L+ L N + P L
Sbjct: 118 QITDIDPLKNLTN------LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LA 169
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
+ L+ LD+SSNK+ ++ TNLE L +NN S I L + + L L ++
Sbjct: 170 NLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLN 224
Query: 183 NNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
N L IGTL L L +D++ N P S + +L L L N+ S +
Sbjct: 225 GNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS---N 274
Query: 241 ATSVNGCASLEYLDVSEN 258
+ + G +L L+++EN
Sbjct: 275 ISPLAGLTALTNLELNEN 292
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+++ N L P L +LT L +++NQ++ P +ANLT+L L L +N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL LTN L L++S+N L+ L N + P L
Sbjct: 123 QITDIDPLKNLTN------LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LA 174
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
+ L+ LD+SSNK+ ++ TNLE L +NN S I L + + L L ++
Sbjct: 175 NLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLN 229
Query: 183 NNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
N L IGTL L L +D++ N P S + +L L L N+ S +
Sbjct: 230 GNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS---N 279
Query: 241 ATSVNGCASLEYLDVSEN 258
+ + G +L L+++EN
Sbjct: 280 ISPLAGLTALTNLELNEN 297
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+++ N L P L +LT L +++NQ++ P +ANLT+L L L +N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL LTN L L++S+N L+ L N + P L
Sbjct: 122 QITDIDPLKNLTN------LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LA 173
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
+ L+ LD+SSNK+ ++ TNLE L +NN S I L + + L L ++
Sbjct: 174 NLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLN 228
Query: 183 NNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
N L IGTL L L +D++ N P S + +L L L N+ S +
Sbjct: 229 GNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS---N 278
Query: 241 ATSVNGCASLEYLDVSEN 258
+ + G +L L+++EN
Sbjct: 279 ISPLAGLTALTNLELNEN 296
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTN 75
L++LT L+ DISSN++S SV+A LT+LE L+ ++N PL +LTN
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN 217
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+++ N L P L +LT L +++NQ++ P +ANLT+L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL LTN L L++S+N L+ L N + P L
Sbjct: 118 QITDIDPLKNLTN------LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LA 169
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
+ L+ LD+SSNK+ ++ TNLE L +NN S I L + + L L ++
Sbjct: 170 NLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLN 224
Query: 183 NNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
N L IGTL L L +D++ N P S + +L L L N+ S +
Sbjct: 225 GNQLKDIGTLAS-----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS---N 274
Query: 241 ATSVNGCASLEYLDVSEN 258
+ + G +L L+++EN
Sbjct: 275 ISPLAGLTALTNLELNEN 292
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 147/347 (42%), Gaps = 63/347 (18%)
Query: 23 RLSDLTGLKVFDISSNQLS-GNLPSVIANLTSLEYLVLSDNNFQ--GEFPLSL---LTNH 76
RL D + ++ N L +LP + +L SL V S N+ E P SL L ++
Sbjct: 64 RLRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDN 120
Query: 77 SNLEVL-------RLLKVSNNLRFKTENWIPTFQ----LKVLQLPNCSLKVIPSFLLHQY 125
+NL+ L L VSNN K +P Q LK++ + N SLK +P
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEK----LPELQNSSFLKIIDVDNNSLKKLPDL---PP 173
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185
+L+F+ +N+L P +QN L + NNS + LP ++ NN
Sbjct: 174 SLEFIAAGNNQL-EELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESI-----VAGNN 225
Query: 186 LIGTLPQNMGTVLQKLMLIDI--SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243
++ LP+ LQ L + + NN +P ++ L + R+ + DL
Sbjct: 226 ILEELPE-----LQNLPFLTTIYADNNLLKTLPDLPPSLEALNV----RDNYLTDLPELP 276
Query: 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303
SL +LDVSEN F G L++L N + +I++ L L++
Sbjct: 277 ----QSLTFLDVSENIFSG--------LSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 324
Query: 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILY 350
SNN L +P L+ L+ S NHL +P N +QL + Y
Sbjct: 325 SNNKL-IELPALPP---RLERLIASFNHL-AEVPELPQNLKQLHVEY 366
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 108 QLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ 167
QLPN + +PS+ LDLS N L W TNL L LS+N + I
Sbjct: 29 QLPNVP-QSLPSYT------ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 168 LPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKL--------MLIDISKNNFEGNIPYSI 219
V LR+LD+S+N+L TL + + + LQ L ++ + +N FE +
Sbjct: 82 EAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----M 135
Query: 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG------HIFPTYMNLTQ 273
++++L+L ++F +L N L LD+S N P ++
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK--- 191
Query: 274 LRGLYLKNNHFTGKIKAGLLNSHGLV-----VLDISNNLLSGH 311
GLYL NN K L SH V+D +L H
Sbjct: 192 -NGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMH 233
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 253 LDVSENNF---YGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS 309
LD+S NN PT LT L L L +NH + L LD+S+N L
Sbjct: 44 LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 310 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR---QLEILYLSENRL 356
+ L+VLL+ NH+ + V N F QL+ LYLS+N++
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQI 148
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ + NL LDL N+L + SDL L+V + +N + + ++ L+ L LS
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
N FP+ L+ + + L L LL +S+N K+ +LP L+ +P++
Sbjct: 145 QNQI-SRFPVELIKDGNKLPKLMLLDLSSN--------------KLKKLPLTDLQKLPAW 189
Query: 121 L 121
+
Sbjct: 190 V 190
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 14/210 (6%)
Query: 102 FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN- 160
F+ + L + C LK P+ L LK L L+ NK +F + +L L LS N
Sbjct: 302 FKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNA 356
Query: 161 -SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI 219
SFSG + + LRHLD+S N I MG L++L +D + + +S
Sbjct: 357 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVTEFSA 414
Query: 220 G-EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGL 277
+++L LD+S D + G SL L ++ N+F + + N T L L
Sbjct: 415 FLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 473
Query: 278 YLKNNHFTGKIKAGLLNS-HGLVVLDISNN 306
L +I G+ ++ H L +L++S+N
Sbjct: 474 DLSKCQLE-QISWGVFDTLHRLQLLNMSHN 502
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 14/210 (6%)
Query: 102 FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN- 160
F+ + L + C LK P+ L LK L L+ NK +F + +L L LS N
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPF--LKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNA 361
Query: 161 -SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI 219
SFSG + + LRHLD+S N I MG L++L +D + + +S
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVTEFSA 419
Query: 220 G-EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGL 277
+++L LD+S D + G SL L ++ N+F + + N T L L
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478
Query: 278 YLKNNHFTGKIKAGLLNS-HGLVVLDISNN 306
L +I G+ ++ H L +L++S+N
Sbjct: 479 DLSKCQLE-QISWGVFDTLHRLQLLNMSHN 507
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 92
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ V NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 93 ALGAFSGLSSLQ--KLVAVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 126 --NLKFLDLSSNKL 137
NL+ LDLSSNK+
Sbjct: 149 LTNLEHLDLSSNKI 162
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 62 NNFQGEFPLSLLTNH 76
N Q + L H
Sbjct: 160 NKIQSIYCTDLRVLH 174
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 152/387 (39%), Gaps = 51/387 (13%)
Query: 23 RLSDLTGLKV------FDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNH 76
RL DL LKV I +N G +I L ++L L F G
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG---------L 102
Query: 77 SNLEVLRLLKVSNNLRFKTENWI-PTFQLKVLQLPNCSLKVI--PSFLLHQYNLKFLDLS 133
+NLEVL L + + + + N+ P L++L L + ++K I SF L+ LDL+
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 134 SNKLVGNFPTWLMQ-NNTNLEVLRLSNNSFSGI----LQLPKVKHDF----LRHLDISNN 184
NK+ L+ + +LRLS+ + + L K + F + LD+S N
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 185 NLIGTLPQNM-----GTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
++ + GT +Q L+L N++ N+ S G D F G L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLIL----SNSY--NMGSSFGHTN---FKDPDNFTFKG-L 272
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
A+ V C D+S++ + + + + T L L L N L+
Sbjct: 273 EASGVKTC------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
L++S N L N L+VL +S NH+ L+ L L N+L S
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KS 385
Query: 360 IAS--FLNLSSIMHLYLQKNALSGQIP 384
+ F L+S+ ++L N P
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 93
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ V NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 94 ALGAFSGLSSLQ--KLVAVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 126 --NLKFLDLSSNKL 137
NL+ LDLSSNK+
Sbjct: 150 LTNLEHLDLSSNKI 163
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 62 NNFQGEFPLSLLTNH 76
N Q + L H
Sbjct: 161 NKIQSIYCTDLRVLH 175
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ +TE+ L +N ++ P S L+ D+S+NQ+S P L SL LVL N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 64 FQGEFPLSL 72
E P SL
Sbjct: 92 IT-ELPKSL 99
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 92
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ V NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 93 ALGAFSGLSSLQ--KLVAVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 126 --NLKFLDLSSNKL 137
NL+ LDLSSNK+
Sbjct: 149 LTNLEHLDLSSNKI 162
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 62 NNFQGEFPLSLLTNH 76
N Q + L H
Sbjct: 160 NKIQSIYCTDLRVLH 174
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ +TE+ L +N ++ P S L+ D+S+NQ+S P L SL LVL N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 64 FQGEFPLSL 72
E P SL
Sbjct: 92 IT-ELPKSL 99
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 407 IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP----SCFANV 462
I I K+ L L L GN L E+P + L LR+LDLSHN+L S+P SCF
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 463 LFW 465
F+
Sbjct: 297 YFY 299
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
LT L L N+L +LP + +L+ L+V D+S N+L+ +LP+ + + L+Y DN
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 91
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ V NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 92 ALGAFSGLSSLQ--KLVAVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 126 --NLKFLDLSSNKLVGNFPT 143
NL+ LDLSSNK+ + T
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT 167
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 62 NNFQGEFPLSLLTNH 76
N Q + L H
Sbjct: 159 NKIQSIYCTDLRVLH 173
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 176 LRHLDISNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233
++ LD+S N + IG LQ L+L N EG+ YS+G ++ LDLS N
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH---LDLSDN 110
Query: 234 KFSGDLSATSVNGCASLEYLDVSENNF----YGHIFPTYMNLTQLR 275
S LS++ +SL+YL++ N + +FP NL LR
Sbjct: 111 HLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 155
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 12 RENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLS 71
R N +EG + L L L D+S N LS S L+SL+YL L N +Q S
Sbjct: 87 RINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 143
Query: 72 LLTNHSNLEVLRL 84
L N +NL+ LR+
Sbjct: 144 LFPNLTNLQTLRI 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 176 LRHLDISNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233
++ LD+S N + IG LQ L+L N EG+ YS+G ++ LDLS N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH---LDLSDN 84
Query: 234 KFSGDLSATSVNGCASLEYLDVSENNF----YGHIFPTYMNLTQLR 275
S LS++ +SL+YL++ N + +FP NL LR
Sbjct: 85 HLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 172/429 (40%), Gaps = 87/429 (20%)
Query: 12 RENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLS 71
R N +EG + L L L D+S N LS S L+SL+YL L N +Q S
Sbjct: 61 RINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 72 LLTNHSNLEVLRLLKVSN-----NLRFKTENWIPTFQLKVLQLPNC---SLKVI------ 117
L N +NL+ LR+ V + F + ++K L L N SLK I
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 118 ------PSFLLHQY-----NLKFLDLSSNKLV----GNFPTWLMQNNTNLEVLR---LSN 159
+FLL + ++++L+L L P + + R L++
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 160 NSFSG-------ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTV--LQKLMLIDISKNN 210
SF+ IL+L +V+ D D + N L P V L K+ + I +
Sbjct: 238 ESFNELLKLLRYILELSEVEFD-----DCTLNGLGDFNPSESDVVSELGKVETVTIRR-- 290
Query: 211 FEGNIP--YSIGEMKELFLLDLSRNKFSGDLSATSVNGCA------SLEYLDVSENNFYG 262
+IP Y ++ ++ L + + + S + C+ SLE+LD+SEN
Sbjct: 291 --LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN---- 344
Query: 263 HIFPTYMNLTQLRG-------LYLKNNHFTGKIKAG--LLNSHGLVVLDISNNLLSGHIP 313
+ Y+ + +G L L NH K G LL L LDIS N +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MP 403
Query: 314 --C-WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIM 370
C W +L++ ++ IP + LE+L +S N L S + F L +
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNL-DSFSLF--LPRLQ 454
Query: 371 HLYLQKNAL 379
LY+ +N L
Sbjct: 455 ELYISRNKL 463
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 99/269 (36%), Gaps = 53/269 (19%)
Query: 110 PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLP 169
P L+ +P+ + FL N+ + P Q+ NL +L L +N+ +GI
Sbjct: 18 PQQGLQAVPTGIPASSQRIFL--HGNR-ISYVPAASFQSCRNLTILWLHSNALAGIDAAA 74
Query: 170 KVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLD 229
L LD+S+N +L ++D P + + L L
Sbjct: 75 FTGLTLLEQLDLSDN--------------AQLRVVD----------PTTFRGLGHLHTLH 110
Query: 230 LSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK 289
L R +L G A+L+YL + +NN T+ +L L L+L
Sbjct: 111 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL---------- 159
Query: 290 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEIL 349
HG + + + G LD LL+ +NH+ P + +L L
Sbjct: 160 ------HGNRIPSVPEHAFRG--------LHSLDRLLLHQNHVARVHPHAFRDLGRLMTL 205
Query: 350 YLSENRLFGSIASFL-NLSSIMHLYLQKN 377
YL N L A L L S+ +L L N
Sbjct: 206 YLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 41/215 (19%)
Query: 101 TFQLKVLQLPNCSLKVIPSFL-LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159
T ++K + + N + ++P L H +L++LDLS N +V + L N
Sbjct: 309 TERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEY---------------LKN 353
Query: 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVL--QKLMLIDISKNNFEGNIPY 217
++ P ++ LR N + +L + T+L + L IDISKN+F +P
Sbjct: 354 SACED--AWPSLQTLILRQ------NHLASLEKTGETLLTLKNLTNIDISKNSFHS-MPE 404
Query: 218 SIGEMKELFLLDLSRNKFSGDLSATSVNGC--ASLEYLDVSENNFYGHIFPTYMNLTQLR 275
+ +++ L+LS + SV GC +LE LDVS NN +NL QL+
Sbjct: 405 TCQWPEKMKYLNLSSTRIH------SVTGCIPKTLEILDVSNNNLNL----FSLNLPQLK 454
Query: 276 GLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG 310
LY+ N A LL L+VL IS N L
Sbjct: 455 ELYISRNKLMTLPDASLL--PMLLVLKISRNQLKS 487
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 249 SLEYLDVSENNFYGHIFPTYM---NLTQLRGLYLKNNHFTGKIKAG--LLNSHGLVVLDI 303
SLEYLD+SEN L+ L L+ NH K G LL L +DI
Sbjct: 335 SLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDI 394
Query: 304 S-NNLLSGHIPC-WIGNFSYLDVLLMSKNHLEGNIPVQIN--------------NFRQLE 347
S N+ S C W YL++ + + G IP + N QL+
Sbjct: 395 SKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLK 454
Query: 348 ILYLSENRLF 357
LY+S N+L
Sbjct: 455 ELYISRNKLM 464
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N + +P ++ L L+ +++SNQL V LTSL+Y+ L DN +
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Query: 69 P 69
P
Sbjct: 514 P 514
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 32/185 (17%)
Query: 204 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS-ATSVNGCASLEYLDVSENNFYG 262
++ ++N F ++ +K L L L RN A +SLE LDVS N+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL-- 415
Query: 263 HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI-PCWIGNFSY 321
N+H + A + ++VL++S+N+L+G + C
Sbjct: 416 ------------------NSHAYDRTCAW---AESILVLNLSSNMLTGSVFRCLPPKVKV 454
Query: 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNAL 379
LD+ N+ +IP + + + L+ L ++ N+L S+ F L+S+ +++L N
Sbjct: 455 LDL----HNNRIMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 380 SGQIP 384
P
Sbjct: 510 DCTCP 514
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSFL 121
+ P LLT LE L L +NNL + + L L L SL IP
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 122 LHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
+ L F L N + N F WL N N+ V +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 87/237 (36%), Gaps = 54/237 (22%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65
L ELDL +L +LP L L+ LK +S+N+ +N SL +L + N +
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 66 GEFPLSLLTNHSNLEVLRL-------------------------LKVSNNLRFKTENWIP 100
E L N NL L L L + L KTE +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 101 TFQLKVLQLPNCSLKVIPS-------FLLHQYNL--KFLDLSSNKLVGNFP--------- 142
QL++L L LKV + LL NL LD+SS +L P
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 143 ----------TWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGT 189
T +Q LE+L LS S I Q + H+D+S+N L +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 36/296 (12%)
Query: 23 RLSDL--------TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLT 74
R SDL T ++ D+++ L+G LPS I + SL+ LVL+ N+F +
Sbjct: 264 RFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQI---- 318
Query: 75 NHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSS 134
N ++ LR L + N+R L + L NL+ LDLS
Sbjct: 319 NAASFPSLRDLYIKGNMR--------------------KLDLGTRCLEKLENLQKLDLSH 358
Query: 135 NKL-VGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQN 193
+ + + ++N +L+ L LS N G+ + L LD++ +L P +
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 194 MGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF-SGDLSATSV-NGCASLE 251
L L ++++S + + + + +++L L+L N F G +S T++ SLE
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 252 YLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 307
L +S N + L + L L +N TG L + GL + SNN+
Sbjct: 479 ILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNI 534
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 32/244 (13%)
Query: 2 KLKNLTELDLRENNLEGQ--LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVL 59
KL+NL +LDL +++E +L +L L+ ++S N+ G LE L +
Sbjct: 347 KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDV 406
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS 119
+ + + P HS + L L L+VL L +C L
Sbjct: 407 AFTHLHVKAP------HSPFQNLHL-------------------LRVLNLSHCLLDTSNQ 441
Query: 120 FLLHQ-YNLKFLDLSSNKLVGN--FPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
LL +L+ L+L N T L+Q +LE+L LS+ + I Q +
Sbjct: 442 HLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNV 501
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
HLD+S+N+L G + + K + ++++ NN P+ + + + +++LS N
Sbjct: 502 NHLDLSHNSLTGDSMDALSHL--KGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
Query: 237 GDLS 240
S
Sbjct: 560 CTCS 563
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 178 HLDISNNNLIGTLPQNMGTVLQ-KLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
HLD SNN L T+ +N G + + + +++ +++ I +MK L LD+S+N S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIF 265
D + SL L++S N IF
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N ++ +P ++ L L+ +++SNQL + LTSL+ + L N +
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 69 P 69
P
Sbjct: 485 P 485
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 101/256 (39%), Gaps = 33/256 (12%)
Query: 146 MQNNTNLEVLRLSN-----NSFSGILQLPKVKHDFLRHLDISNNNLIGTLP----QNMGT 196
+Q N L L L+N NSF ILQL V H + + ISN L G L GT
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273
Query: 197 VLQKLMLIDISKN--NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254
L+ L + + + F + Y I + +S + L + + + +LD
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI---SPFLHLD 330
Query: 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHI 312
S N +F +LT+L L L+ N KI L LDIS N +S
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Query: 313 PCWIGNFSYLDVLL---MSKNHLEGNIPVQINNFR----QLEILYLSENRLFGSIASFLN 365
G+ S+ LL MS N L I FR ++++L L N++ +
Sbjct: 391 K--KGDCSWTKSLLSLNMSSNILTDTI------FRCLPPRIKVLDLHSNKIKSIPKQVVK 442
Query: 366 LSSIMHLYLQKNALSG 381
L ++ L + N L
Sbjct: 443 LEALQELNVASNQLKS 458
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSFL 121
+ P LLT LE L L +NNL + + L L L SL IP
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 122 LHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
+ L F L N + N F WL N N+ V +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
LDL N L + L+V D+S ++ +L+ L L+L+ N Q
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 93
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY--- 125
L + S+L+ +L+ + NL EN+ P LK L+ N + +I SF L +Y
Sbjct: 94 ALGAFSGLSSLQ--KLVALETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 126 --NLKFLDLSSNKL 137
NL+ LDLSSNK+
Sbjct: 150 LTNLEHLDLSSNKI 163
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
L +L +L E NL + + L LK +++ N + S LP +NLT+LE+L LS
Sbjct: 101 LSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 62 NNFQGEFPLSLLTNH 76
N Q + L H
Sbjct: 161 NKIQSIYCTDLRVLH 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSFL 121
+ P LLT LE L L +NNL + + L L L SL IP
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 122 LHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
+ L F L N + N F WL N N+ V +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSFL 121
+ P LLT LE L L +NNL + + L L L SL IP
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 122 LHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
+ L F L N + N F WL N N+ V +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL L EL L N L+ LT LK + NQL V LTSL+Y+ L D
Sbjct: 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Query: 62 NNFQGEFP 69
N + P
Sbjct: 158 NPWDCTCP 165
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 77 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSFL 121
+ P LLT LE L L +NNL + + L L L SL IP
Sbjct: 136 ELK-TLPPGLLTPTPKLEKLSL--ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
Query: 122 LHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
+ L F L N + N F WL N N+ V +
Sbjct: 193 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 232
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPSFL 121
+ P LLT LE L L +N+L + + L L L SL IP
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSL--ANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 122 LHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
+ L F L N + N F WL N N+ V +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 139/324 (42%), Gaps = 53/324 (16%)
Query: 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI 219
N+F+G+ + +RHLD+S+ + +L + L+ L +++++ N +
Sbjct: 258 NTFAGLAR------SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279
+ L +L+LS N G+L +++ G + Y+D+ +N+ T+ L +L+ L L
Sbjct: 311 YGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 280 KNN-----HFTGKIKAGLLNSHGLVVL---DISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331
++N HF I L+ + LV L +++ NL+ +S+N
Sbjct: 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH-----------------LSENR 412
Query: 332 LEG-NIPVQINNFRQLEILYLSENRLFGSIASFLNLS---SIMHLYLQKN----ALSGQI 383
LE +I + L+IL L++NR F S + S S+ L+L +N A ++
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 384 PXXXXXXXXXXXXXXXXNKFFGRIPHQINKH-SELRVLLLRGNYL----QGEIPIALCQL 438
+ + +P + H + LR L L N L ++P
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ 525
Query: 439 QKLRILDLSHNKLNGSIPSCFANV 462
L ILD+S N+L P F ++
Sbjct: 526 ANLEILDISRNQLLAPNPDVFVSL 549
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 18/164 (10%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVL-----RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI 117
+ P LLT LE L +L ++ L EN L L L SL I
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN------LDTLLLQENSLYTI 187
Query: 118 PSFLLHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
P + L F L N + N F WL N N+ V +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 220 GEMKELFLLDLSRNKF-SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278
G + L LDLS N+ S L ++ +L LDVS N L +L+ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332
LK N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL NLT LDL N L+ LT LK ++ NQL V LTSL ++ L +
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
Query: 62 N 62
N
Sbjct: 215 N 215
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL NLT L L N L+ LT L D+ +NQL V LT L+ L L+D
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 62 NNFQG 66
N +
Sbjct: 191 NQLKS 195
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L NLT L L N L+ LT LK + NQL V LT+L YL L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIP 118
N Q P + +NL L L +N L+ E QLK L L + LK +P
Sbjct: 143 NQLQS-LPKGVFDKLTNLTRLDL--DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 18/164 (10%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVL-----RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI 117
+ P LLT LE L +L ++ L EN L L L SL I
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN------LDTLLLQENSLYTI 187
Query: 118 PSFLLHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
P + L F L N + N F WL N N+ V +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 220 GEMKELFLLDLSRNKF-SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278
G + L LDLS N+ S L ++ +L LDVS N L +L+ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332
LK N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 134/304 (44%), Gaps = 62/304 (20%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDL--------TGLKVFDISSNQLSGNLPSVIANLTSL 54
LK L E+ + NL+ R SD+ T L+ D+++ L G LPS + L L
Sbjct: 245 LKGLCEMSVESLNLQEH---RFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLL 300
Query: 55 EYLVLSDNNFQ-------GEFP-LSLLTNHSNLEVLRL----LKVSNNLRF--KTENWIP 100
+ LVLS N+F FP L+ L N++ L L L+ NL+ + N I
Sbjct: 301 KKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIE 360
Query: 101 TFQLKVLQLPNCS-LKVI------PSFLLHQY-----NLKFLDLSSNKLVGNFPTWLMQN 148
LQL N S L+ + P L Q L+ LDL+ +L N P QN
Sbjct: 361 ASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQN 420
Query: 149 NTNLEVLRLS----NNSFSGILQ-LPKVKH-----DFLRHLDISNNNLIGTLPQNMGTVL 198
L+VL L+ + S +L LP ++H + + I+ NL+ T+ +L
Sbjct: 421 LHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLIL 480
Query: 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLE--YLDVS 256
L+ I + F +S+G+M +DLS N + D S++ + L+ YL+++
Sbjct: 481 SSCGLLSIDQQAF-----HSLGKMSH---VDLSHNSLTCD----SIDSLSHLKGIYLNLA 528
Query: 257 ENNF 260
N+
Sbjct: 529 ANSI 532
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL 298
++ TS+NG SL++L + + F NL L LYL +NH + + L
Sbjct: 93 MAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNL 152
Query: 299 VVLDISNNLL 308
VLD NN +
Sbjct: 153 KVLDFQNNAI 162
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 18/164 (10%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVL-----RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI 117
+ P LLT LE L +L ++ L EN L L L SL I
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN------LDTLLLQENSLYTI 187
Query: 118 PSFLLHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
P + L F L N + N F WL N N+ V +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 220 GEMKELFLLDLSRNKF-SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278
G + L LDLS N+ S L ++ +L LDVS N L +L+ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332
LK N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 151 NLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN--NNLIGTLPQNMGTVLQKLMLIDISK 208
+LEVL+L NS I Q+ + L L+ +N + +P L KL + +
Sbjct: 100 HLEVLQLGRNS---IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 209 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTY 268
N E Y+ + L LDL K +S + G +L+YL++ N P
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNL 214
Query: 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGL 298
L L L + NHF +I+ G + HGL
Sbjct: 215 TPLVGLEELEMSGNHFP-EIRPG--SFHGL 241
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 18/164 (10%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L LDL N L+ LP L L V D+S N+L+ + L L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 63 NFQGEFPLSLLTNHSNLEVL-----RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI 117
+ P LLT LE L +L ++ L EN L L L SL I
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN------LDTLLLQENSLYTI 187
Query: 118 PSFLLHQYNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
P + L F L N + N F WL N N+ V +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK 231
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 220 GEMKELFLLDLSRNKF-SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278
G + L LDLS N+ S L ++ +L LDVS N L +L+ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332
LK N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 151 NLEVLRLSNN--------SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLM 202
+LE+L+LS N +F+G+ L L++ +N L T+P L KL
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANL--------NTLELFDNRLT-TIPNGAFVYLSKLK 139
Query: 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG 262
+ + N E Y+ + L LDL K +S + G ++L YL+++ N
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 263 HIFPTYMNLTQLRGLYLKNNHFTGKIKAG 291
P L +L L L NH + I+ G
Sbjct: 200 --IPNLTPLIKLDELDLSGNHLSA-IRPG 225
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 151 NLEVLRLSNNSFSGILQLPKV----KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDI 206
L +RLS+N+F Q P + KH L HL + NN L + LQ+L +
Sbjct: 94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 153
Query: 207 SKN 209
+KN
Sbjct: 154 AKN 156
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 151 NLEVLRLSNNSFSGILQLPKV----KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDI 206
L +RLS+N+F Q P + KH L HL + NN L + LQ+L +
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154
Query: 207 SKN 209
+KN
Sbjct: 155 AKN 157
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 4/193 (2%)
Query: 165 ILQLPKVKHDFLRHLDIS--NNNLIGTLPQNMGTVLQKLMLIDISKN-NFEGNIPYSIGE 221
I +P R+L I ++N++ + T L L +D+S N P +
Sbjct: 43 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 102
Query: 222 MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281
+ L L L R +L G A+L+YL + +N T+ +L L L+L
Sbjct: 103 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 161
Query: 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341
N + + H L L + N ++ P + L L + N+L +
Sbjct: 162 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221
Query: 342 NFRQLEILYLSEN 354
R L+ L L++N
Sbjct: 222 PLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 4/193 (2%)
Query: 165 ILQLPKVKHDFLRHLDIS--NNNLIGTLPQNMGTVLQKLMLIDISKN-NFEGNIPYSIGE 221
I +P R+L I ++N++ + T L L +D+S N P +
Sbjct: 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103
Query: 222 MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281
+ L L L R +L G A+L+YL + +N T+ +L L L+L
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341
N + + H L L + N ++ P + L L + N+L +
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 342 NFRQLEILYLSEN 354
R L+ L L++N
Sbjct: 223 PLRALQYLRLNDN 235
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 27 LTGLKVFDISSNQLSGNLPS--VIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84
L L+V ++ L G + S LTSLE LVL DNN + P S N VL L
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 99 IPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLS 158
IPT + ++ N K+ P H NL+ L +SNKL PT + T L L L+
Sbjct: 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN 89
Query: 159 NNSFSGILQLPKVKHDFLR---HLDISNN 184
+N I P+ D L+ H+ + NN
Sbjct: 90 DNHLKSI---PRGAFDNLKSLTHIYLYNN 115
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 125/324 (38%), Gaps = 59/324 (18%)
Query: 150 TNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMG----TVLQKLMLID 205
N ++L S ++FSG+ K L LD+S NNL ++G + L L +
Sbjct: 230 ANNQLLATSESTFSGL------KWTNLTQLDLSYNNL-----HDVGNGSFSYLPSLRYLS 278
Query: 206 ISKNNFEGNIPYSIGEMKELFLLDLSR--NKFSGDLSAT------SVNGCASLEYLDVSE 257
+ NN + P S + L L L R K S L++ S LEYL++ +
Sbjct: 279 LEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDD 338
Query: 258 NNFYGHIFPTYMNLTQLRGLYLKNNH-----FTGKIKAGLLNSHGLVVLDISNNLLS--- 309
NN T+ L L+ L L T + L +S L+ L+++ N +S
Sbjct: 339 NNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHS-PLLTLNLTKNHISKIA 397
Query: 310 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLEILYLSENRLFG-SIASFLNLS 367
W+G LD+ L N +E + Q R + +YLS N+ S +SF +
Sbjct: 398 NGTFSWLGQLRILDLGL---NEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVP 454
Query: 368 SIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELRVLLLRGNYL 427
S+ L L++ AL K P L +L L N +
Sbjct: 455 SLQRLMLRRVAL----------------------KNVDISPSPFRPLRNLTILDLSNNNI 492
Query: 428 QGEIPIALCQLQKLRILDLSHNKL 451
L L+ L ILD HN L
Sbjct: 493 ANINEDLLEGLENLEILDFQHNNL 516
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 36/283 (12%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+K NLT+LDL NNL S L L+ + N + P L++L YL L
Sbjct: 245 LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK 304
Query: 61 DNNFQGEFPLSLLTNHSN-----LEVLRLLKVSNN--LRFKTENWIPTFQLKVLQLPN-- 111
+ L+ N + L+ L L + +N K+ + LK L L
Sbjct: 305 RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTF 364
Query: 112 CSLKVIP--SFL-LHQYNLKFLDLSSN---KLVGNFPTWLMQNNTNLEVL---------R 156
SL+ + +F+ L L L+L+ N K+ +WL Q L +L +
Sbjct: 365 TSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQ----LRILDLGLNEIEQK 420
Query: 157 LSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
LS + G+ + ++ + ++L +S ++ +P LQ+LML ++ N + + P
Sbjct: 421 LSGQEWRGLRNIFEIYLSYNKYLQLSTSSF-ALVPS-----LQRLMLRRVALKNVDIS-P 473
Query: 217 YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259
++ L +LDLS N +++ + G +LE LD NN
Sbjct: 474 SPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNN 515
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +TEL+L N L+ ++ L +K D++S Q++ P +A L++L+ L L N
Sbjct: 84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN 139
Query: 63 NFQGEFPLSLLTN 75
PL+ LTN
Sbjct: 140 QITNISPLAGLTN 152
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT--GKIKAGL--LNSH------- 296
ASLEYLD +N P L+ L + NN T ++ A L +N+
Sbjct: 100 ASLEYLDACDNRL--STLPELP--ASLKHLDVDNNQLTXLPELPALLEYINADNNQLTXL 155
Query: 297 -----GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLEIL 349
L VL + NN L+ +P + LDV S N LE +PV+ ++ + EI
Sbjct: 156 PELPTSLEVLSVRNNQLT-FLPELPESLEALDV---STNLLESLPAVPVRNHHSEETEIF 211
Query: 350 Y-LSENRLFGSIASFLNLSSIMHLYLQKNALSGQI 383
+ ENR+ + L+L + L+ N LS +I
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 331 HLEGN----IPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQKNALSGQIP 384
+L+GN +P +++N++ L ++ LS NR+ S SF N++ ++ L L N L P
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 20/167 (11%)
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN--------SFSGILQLPKVKHDFLR 177
N ++L+L N + T ++ +LE+L+LS N +F+G LP L
Sbjct: 36 NTRYLNLQENS-IQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG---LPS-----LN 86
Query: 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
L++ +N L T+P L KL + + N E Y+ + L LDL K
Sbjct: 87 TLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE 145
Query: 238 DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHF 284
+S + G +L YL++ N P L +L L L N
Sbjct: 146 YISEAAFEGLVNLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRL 190
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 168 LPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLID-----ISKNNFEGNIPYSIGEM 222
P + H +D + L +P+++ +L+L D IS + G +P+
Sbjct: 2 CPAMCHCEGTTVDCTGRGL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPH----- 55
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282
L L+L RN+ +G + + G + ++ L + EN ++ L QL+ L L +N
Sbjct: 56 --LVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 283 HFTGKIKAGLLNSHGLVVLDISNN 306
+ + + + L L++++N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,926,106
Number of Sequences: 62578
Number of extensions: 665408
Number of successful extensions: 2657
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1808
Number of HSP's gapped (non-prelim): 448
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)