Query 042089
Match_columns 557
No_of_seqs 438 out of 4267
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7E-58 1.5E-62 523.4 36.0 451 4-462 69-522 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.9E-58 1.3E-62 524.0 34.8 455 2-464 91-548 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 7.9E-41 1.7E-45 315.8 -11.8 435 3-458 67-545 (565)
4 KOG4194 Membrane glycoprotein 100.0 7.2E-37 1.6E-41 301.2 8.4 390 31-427 55-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.2E-38 4.7E-43 299.3 -12.5 426 5-452 46-494 (565)
6 KOG4194 Membrane glycoprotein 100.0 3.2E-35 7E-40 289.6 6.5 362 80-446 81-446 (873)
7 KOG0444 Cytoskeletal regulator 100.0 1.7E-34 3.6E-39 286.3 -1.8 364 3-428 6-375 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 6.3E-34 1.4E-38 282.3 -4.5 363 79-452 9-375 (1255)
9 KOG0618 Serine/threonine phosp 100.0 5.9E-34 1.3E-38 294.8 -5.1 418 5-450 46-487 (1081)
10 KOG0618 Serine/threonine phosp 100.0 5.5E-32 1.2E-36 280.3 -6.3 421 6-453 23-466 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.5E-27 233.8 26.9 341 69-426 550-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 6.8E-23 1.5E-27 235.7 24.2 339 95-450 551-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 1.9E-21 4.1E-26 208.5 17.0 263 104-435 203-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 5.3E-21 1.2E-25 205.1 17.6 263 30-340 203-465 (788)
15 KOG4237 Extracellular matrix p 99.8 5.9E-23 1.3E-27 194.9 -1.9 139 20-162 61-200 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 6.2E-20 1.3E-24 198.2 12.6 289 104-455 180-473 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 2.1E-19 4.6E-24 194.1 12.5 246 77-356 178-427 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 4.2E-20 9.2E-25 185.0 2.8 253 198-451 22-319 (319)
19 KOG4237 Extracellular matrix p 99.8 6.8E-21 1.5E-25 181.0 -4.4 290 162-453 55-360 (498)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.6E-23 174.4 2.6 136 292-427 161-319 (319)
21 KOG0617 Ras suppressor protein 99.6 3.6E-18 7.8E-23 144.6 -6.3 178 273-456 34-216 (264)
22 KOG0617 Ras suppressor protein 99.6 2.7E-17 5.8E-22 139.3 -3.8 154 4-163 33-186 (264)
23 KOG0532 Leucine-rich repeat (L 99.2 4E-13 8.6E-18 134.1 -4.0 194 247-449 74-270 (722)
24 KOG0532 Leucine-rich repeat (L 99.2 5.5E-13 1.2E-17 133.2 -3.0 196 221-426 73-271 (722)
25 PLN03150 hypothetical protein; 99.2 5.4E-11 1.2E-15 128.5 8.5 110 346-455 420-531 (623)
26 PLN03150 hypothetical protein; 99.1 5.4E-11 1.2E-15 128.6 7.3 95 368-462 419-513 (623)
27 COG4886 Leucine-rich repeat (L 99.1 5.5E-11 1.2E-15 122.7 6.6 154 297-457 141-295 (394)
28 KOG1909 Ran GTPase-activating 99.1 1.3E-11 2.9E-16 116.7 0.4 232 3-260 29-310 (382)
29 KOG3207 Beta-tubulin folding c 99.1 2.5E-11 5.4E-16 117.9 2.1 162 100-261 119-284 (505)
30 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.2E-15 102.9 5.4 124 29-158 20-148 (175)
31 COG4886 Leucine-rich repeat (L 99.1 1.6E-10 3.6E-15 119.1 6.5 199 203-434 97-296 (394)
32 KOG1909 Ran GTPase-activating 99.0 3.4E-11 7.5E-16 114.0 -0.4 243 198-452 29-311 (382)
33 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.7E-15 107.8 3.1 129 321-454 285-414 (490)
34 KOG3207 Beta-tubulin folding c 99.0 7E-11 1.5E-15 114.9 0.5 186 25-235 118-313 (505)
35 PF14580 LRR_9: Leucine-rich r 99.0 5.2E-10 1.1E-14 99.4 5.6 121 321-445 20-146 (175)
36 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.5E-15 108.0 1.1 130 295-429 283-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.8 7.3E-09 1.6E-13 114.7 8.0 131 27-161 522-653 (889)
38 PF13855 LRR_8: Leucine rich r 98.8 4.3E-09 9.3E-14 76.8 3.3 61 4-64 1-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 6.5E-09 1.4E-13 75.8 3.9 61 391-451 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.8 1.8E-08 3.8E-13 111.7 8.4 310 125-457 523-847 (889)
41 KOG2120 SCF ubiquitin ligase, 98.6 7.9E-10 1.7E-14 102.5 -5.1 155 5-160 186-348 (419)
42 KOG0531 Protein phosphatase 1, 98.6 5E-09 1.1E-13 108.4 -0.3 126 4-137 72-198 (414)
43 KOG0531 Protein phosphatase 1, 98.5 1.1E-08 2.3E-13 105.9 -0.7 19 365-383 303-321 (414)
44 KOG2120 SCF ubiquitin ligase, 98.5 7.1E-09 1.5E-13 96.3 -4.0 181 175-378 186-374 (419)
45 KOG2982 Uncharacterized conser 98.2 2.2E-07 4.7E-12 86.6 -0.3 116 18-135 35-156 (418)
46 KOG1859 Leucine-rich repeat pr 98.2 3.3E-08 7.1E-13 102.1 -6.4 128 126-261 165-292 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.2 9.4E-07 2E-11 81.4 3.0 85 3-88 29-131 (388)
48 KOG1859 Leucine-rich repeat pr 98.1 6.6E-08 1.4E-12 100.0 -6.3 124 322-451 166-291 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.1 7.6E-07 1.7E-11 82.0 -0.1 42 268-309 88-133 (388)
50 KOG4579 Leucine-rich repeat (L 98.0 3.7E-07 8.1E-12 75.4 -2.7 109 345-456 54-163 (177)
51 PF12799 LRR_4: Leucine Rich r 97.9 9.1E-06 2E-10 54.3 3.3 37 28-65 1-37 (44)
52 KOG2982 Uncharacterized conser 97.9 2.4E-06 5.1E-11 79.8 0.2 204 8-213 49-263 (418)
53 KOG4341 F-box protein containi 97.9 5.3E-07 1.2E-11 87.9 -5.2 153 270-422 292-459 (483)
54 KOG3665 ZYG-1-like serine/thre 97.9 6.9E-06 1.5E-10 89.1 2.4 150 52-203 122-279 (699)
55 KOG4579 Leucine-rich repeat (L 97.8 9.4E-07 2E-11 73.1 -3.2 111 296-408 53-163 (177)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.4E-10 53.2 3.1 36 416-452 2-37 (44)
57 KOG4341 F-box protein containi 97.8 5.2E-07 1.1E-11 88.0 -6.3 135 173-307 293-437 (483)
58 KOG3665 ZYG-1-like serine/thre 97.6 2.4E-05 5.2E-10 84.9 2.5 146 5-153 123-278 (699)
59 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.3E-09 65.4 5.8 83 29-114 43-125 (233)
60 PRK15386 type III secretion pr 97.4 0.00049 1.1E-08 69.1 8.6 28 103-136 95-123 (426)
61 PF13306 LRR_5: Leucine rich r 97.4 0.00045 9.8E-09 58.7 7.3 122 22-152 6-128 (129)
62 PRK15386 type III secretion pr 97.3 0.00073 1.6E-08 68.0 8.1 138 268-426 48-188 (426)
63 PF13306 LRR_5: Leucine rich r 97.3 0.00096 2.1E-08 56.6 7.5 122 218-346 7-128 (129)
64 KOG1644 U2-associated snRNP A' 97.2 0.00067 1.4E-08 60.4 5.4 85 4-90 42-126 (233)
65 PF00560 LRR_1: Leucine Rich R 97.0 0.00027 6E-09 39.3 0.7 22 533-555 1-22 (22)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00091 2E-08 62.0 2.2 62 366-429 64-130 (260)
67 KOG2739 Leucine-rich acidic nu 96.7 0.0013 2.8E-08 61.0 3.1 111 20-156 35-149 (260)
68 KOG2123 Uncharacterized conser 96.6 6.8E-05 1.5E-09 69.7 -5.8 87 3-93 18-104 (388)
69 KOG1947 Leucine rich repeat pr 96.5 0.00024 5.1E-09 75.3 -3.5 16 340-355 358-373 (482)
70 KOG1947 Leucine rich repeat pr 96.3 0.00065 1.4E-08 72.0 -1.5 175 123-307 186-373 (482)
71 PF00560 LRR_1: Leucine Rich R 96.2 0.0016 3.6E-08 36.1 0.6 20 441-461 2-21 (22)
72 KOG2123 Uncharacterized conser 96.2 0.00038 8.3E-09 64.8 -3.2 86 103-192 20-106 (388)
73 KOG4308 LRR-containing protein 93.3 0.00081 1.8E-08 70.1 -10.7 84 249-332 88-184 (478)
74 KOG4308 LRR-containing protein 93.1 0.00078 1.7E-08 70.2 -11.2 87 223-309 87-185 (478)
75 PF13504 LRR_7: Leucine rich r 91.8 0.11 2.4E-06 26.7 1.3 13 53-65 2-14 (17)
76 smart00370 LRR Leucine-rich re 91.4 0.2 4.3E-06 28.9 2.3 22 51-73 1-22 (26)
77 smart00369 LRR_TYP Leucine-ric 91.4 0.2 4.3E-06 28.9 2.3 22 51-73 1-22 (26)
78 smart00369 LRR_TYP Leucine-ric 88.5 0.48 1E-05 27.2 2.3 21 125-146 2-22 (26)
79 smart00370 LRR Leucine-rich re 88.5 0.48 1E-05 27.2 2.3 21 125-146 2-22 (26)
80 PF13516 LRR_6: Leucine Rich r 87.8 0.12 2.6E-06 29.2 -0.5 22 532-553 2-23 (24)
81 PF13516 LRR_6: Leucine Rich r 84.3 0.5 1.1E-05 26.6 0.9 13 392-404 3-15 (24)
82 KOG0473 Leucine-rich repeat pr 81.5 0.041 8.9E-07 50.3 -6.6 85 367-454 42-126 (326)
83 KOG3864 Uncharacterized conser 80.2 0.19 4.2E-06 45.1 -2.8 82 200-281 102-185 (221)
84 KOG0473 Leucine-rich repeat pr 77.8 0.091 2E-06 48.2 -5.6 88 340-429 38-125 (326)
85 KOG3864 Uncharacterized conser 77.4 0.65 1.4E-05 41.9 -0.4 35 321-355 102-136 (221)
86 KOG3763 mRNA export factor TAP 66.5 5 0.00011 41.9 3.0 66 124-189 217-285 (585)
87 smart00365 LRR_SD22 Leucine-ri 64.2 5.9 0.00013 22.9 1.7 15 51-65 1-15 (26)
88 smart00368 LRR_RI Leucine rich 63.6 5.9 0.00013 23.2 1.8 14 439-452 2-15 (28)
89 KOG4242 Predicted myosin-I-bin 54.4 31 0.00067 35.6 6.0 18 175-192 166-183 (553)
90 smart00364 LRR_BAC Leucine-ric 54.2 8.8 0.00019 22.2 1.3 17 103-119 3-19 (26)
91 KOG3763 mRNA export factor TAP 42.9 14 0.00031 38.7 1.8 63 101-165 217-285 (585)
92 smart00367 LRR_CC Leucine-rich 38.1 22 0.00048 20.2 1.4 13 51-63 1-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7e-58 Score=523.37 Aligned_cols=451 Identities=34% Similarity=0.480 Sum_probs=287.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhcc-CCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIA-NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
.+++.|+|++|.++|.+|..+..+++|++|+|++|+++|.+|..+. .+++|++|+|++|.++|.+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 3566777777777777777777777777777777777766666544 677777777777777666663 345667777
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
++++|.+.+..+. .+..+.+|++|++++|.+ +.+|..+.++++|++|++++|.+++.+|..+. ++++|+.|++++|.
T Consensus 146 ~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~ 223 (968)
T PLN00113 146 DLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNN 223 (968)
T ss_pred ECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCc
Confidence 7776666555544 245566677777776666 56666666666777777777766666666553 66667777776666
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCc
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 241 (557)
+.+..+..+..+++|++|++++|.+++.+|..+. .+++|+.|++++|.+.+.+|.++.++++|++|++++|.+.+.+|.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 6665333345666666666666666666666664 366666666666666666666666666666666666666655554
Q ss_pred ccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCC
Q 042089 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321 (557)
Q Consensus 242 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~ 321 (557)
.+ ..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|.+++.+++
T Consensus 303 ~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 303 LV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 43 45666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+ .++.|+.|++++|.+++.+|..+..+++|++|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 6666666666666666666666666666666666666555444 556666666666666666665555556666666666
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
|++.+.+|..++ .++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.++
T Consensus 462 n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 462 NKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred ceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 665555555442 3455555666665555555555555555556666665555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.9e-58 Score=523.96 Aligned_cols=455 Identities=31% Similarity=0.451 Sum_probs=422.7
Q ss_pred CCCCcCEEeCCCCCCcccCCccCC-CCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCc
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLS-DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLE 80 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~ 80 (557)
.+++|++|+|++|.++|.+|..+. .+++|++|+|++|+++|.+|. +.+++|++|+|++|.+++.+|. .++++++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~ 167 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLK 167 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCC
Confidence 578999999999999999998765 999999999999999999886 5689999999999999999995 489999999
Q ss_pred EEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccC
Q 042089 81 VLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159 (557)
Q Consensus 81 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 159 (557)
+|++++|.+.+..|. .+.++++|++|++++|.+ +.+|..++.+++|++|++++|++++.+|..+. ++++|++|++++
T Consensus 168 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 245 (968)
T PLN00113 168 VLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVY 245 (968)
T ss_pred EEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcC
Confidence 999999998877766 467889999999999999 78999999999999999999999999999885 999999999999
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeec
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (557)
|.+.+..+..+..+++|++|++++|.+++.+|..++ .+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 999987555567899999999999999999999886 4899999999999999999999999999999999999999888
Q ss_pred CcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCC
Q 042089 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 319 (557)
Q Consensus 240 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~ 319 (557)
|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+...++|+.|++++|.+.+.+|.++..+
T Consensus 325 ~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 PVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 7665 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeC
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL 398 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 398 (557)
++|+.|++++|++++.+|..+..+++|+.|++++|.+++.++... .+++|++|++++|++.+.+|..+ ..++|+.|++
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~l 482 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDL 482 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEEC
Confidence 999999999999999999999999999999999999999888755 89999999999999999988766 4588999999
Q ss_pred CCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccccc
Q 042089 399 RDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLF 464 (557)
Q Consensus 399 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~~ 464 (557)
++|++++.+|.++..+++|+.|+|++|++++.+|..+..+++|++|++++|.++|.+|..+.+++.
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999998876653
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.9e-41 Score=315.78 Aligned_cols=435 Identities=26% Similarity=0.336 Sum_probs=285.2
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
+..|++|++.+|.++ ..|++++.+..++.++.++|+++ .+|+.++.+.+|+.++.++|.+. ++|++ ++.+-.++.+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~-i~~~~~l~dl 142 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDS-IGRLLDLEDL 142 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCch-HHHHhhhhhh
Confidence 444555555555555 44555555555555555555555 55555555556666666666555 44433 4555555555
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 162 (557)
+..+|+.....+ .+..+.+|..+++.+|++.++|+..-+++.|++||...|.+. .+|..++ .+.+|..|++..|.+
T Consensus 143 ~~~~N~i~slp~--~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 143 DATNNQISSLPE--DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELG-GLESLELLYLRRNKI 218 (565)
T ss_pred hccccccccCch--HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhc-chhhhHHHHhhhccc
Confidence 555555432211 234555666666666666666655555666666666666555 6666653 666666666666666
Q ss_pred cCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcc
Q 042089 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242 (557)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 242 (557)
... ..+..|..|+++.++.|++. .+|+..+..++++.+||+.+|++. ..|+.++-+++|++||+++|.++ .+|..
T Consensus 219 ~~l--Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s 293 (565)
T KOG0472|consen 219 RFL--PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS 293 (565)
T ss_pred ccC--CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence 554 23445566666666666665 666666666667777777777766 56666666777777777777766 44444
Q ss_pred cccCCCCCcEEeccCCcccc-------------------------------------ccCc----cccCcccccceeccc
Q 042089 243 SVNGCASLEYLDVSENNFYG-------------------------------------HIFP----TYMNLTQLRGLYLKN 281 (557)
Q Consensus 243 ~~~~~~~L~~L~Ls~n~l~~-------------------------------------~~~~----~~~~l~~L~~L~L~~ 281 (557)
. +++ .|+.|.+.+|.+.. ..+. ......+.++|++++
T Consensus 294 L-gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 294 L-GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred c-ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 3 344 66666666664410 0000 011233455666666
Q ss_pred ccccccccccccCCC---CCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 282 NHFTGKIKAGLLNSH---GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 282 n~~~~~~~~~l~~~~---~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
-+++ .+|...+... -++.++++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|+.|++++|.+..
T Consensus 372 ~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~ 449 (565)
T KOG0472|consen 372 KQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND 449 (565)
T ss_pred cccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh
Confidence 6655 3444333322 2667777777776 466666555554444444445555889999999999999999998875
Q ss_pred ccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCC
Q 042089 359 SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL 438 (557)
Q Consensus 359 ~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l 438 (557)
..-....+..|+.++++.|+|. .+|.++.....++.+-.++|++...-|..+.++.+|..|||.+|.+. .||..+++|
T Consensus 450 LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 450 LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 4334457888999999999998 89999999888999999999996555566999999999999999999 899999999
Q ss_pred CCCCEEEccCCcCcCCcCcc
Q 042089 439 QKLRILDLSHNKLNGSIPSC 458 (557)
Q Consensus 439 ~~L~~Ldls~N~l~g~ip~~ 458 (557)
.+|++|++++|+|. .|+.
T Consensus 528 tnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred cceeEEEecCCccC--CCHH
Confidence 99999999999998 6654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-37 Score=301.22 Aligned_cols=390 Identities=24% Similarity=0.226 Sum_probs=318.8
Q ss_pred CEEECCCCcCCccCchhccCC--CCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEE
Q 042089 31 KVFDISSNQLSGNLPSVIANL--TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108 (557)
Q Consensus 31 ~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 108 (557)
+.||.+.+.+...--..+... +.-+.||+++|.++ .+...+|.++++|+.+.+..|.++ .+|. ......+|+.|+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~ 131 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLD 131 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEe
Confidence 345666665543211222211 23345777777776 455556677777777777766654 2332 123344688999
Q ss_pred CCCCCCCCcC-hhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCc
Q 042089 109 LPNCSLKVIP-SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLI 187 (557)
Q Consensus 109 L~~n~l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 187 (557)
|.+|.+..+. +.+..++.|+.||||.|.++ ++|..-|..-.++++|+|++|.++......+..+.+|..|.|++|+++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 9999885554 56788889999999999998 777766656678999999999999877677888889999999999999
Q ss_pred CCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCcc
Q 042089 188 GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPT 267 (557)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 267 (557)
.+|...++.+++|+.|+|..|.+.-.---.|..+++|+.|.+..|.+. .+....|..|.++++|+|+.|+++..-..+
T Consensus 211 -tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 211 -TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred -ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccc
Confidence 899988888999999999999987444567899999999999999998 677777889999999999999998777788
Q ss_pred ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCc
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 347 (557)
+.++++|+.|+++.|.+...-++.+..+++|++|+|++|+++..-+..|..++.|+.|.|++|.+...--..|..+++|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 89999999999999999988888888999999999999999998899999999999999999999877777888899999
Q ss_pred EEEccCccccccccc----ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 348 ILYLSENRLFGSIAS----FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 348 ~L~L~~n~l~~~i~~----~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
.|||++|.+++.|.. +..+++|+.|++.+|++...-...|.++..|++|||++|.|...-|.+|..+ .|+.|.+.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 999999999876543 2379999999999999996556889999999999999999988889999988 88888876
Q ss_pred CCcc
Q 042089 424 GNYL 427 (557)
Q Consensus 424 ~N~l 427 (557)
.-.|
T Consensus 448 Sssf 451 (873)
T KOG4194|consen 448 SSSF 451 (873)
T ss_pred ccce
Confidence 5443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=299.32 Aligned_cols=426 Identities=25% Similarity=0.313 Sum_probs=275.0
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
.|+.+++++|.+. .+.+.+.++..|.+|+++.|++. ..|++++.+..++.++.++|.+. .+|+. ++.+.+++.+++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~-i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQ-IGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHH-Hhhhhhhhhhhc
Confidence 4677888888887 45667888999999999999988 78889999999999999999988 78864 788888888988
Q ss_pred cCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccC
Q 042089 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 164 (557)
+.|.+..-.+ .++.+..|+.++..+|++..+|+.++.+.++..+++.+|+++ ..|+... +++.|+.++..+|.++.
T Consensus 122 s~n~~~el~~--~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 122 SSNELKELPD--SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLET 197 (565)
T ss_pred cccceeecCc--hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhhc
Confidence 8888764333 356777888888888888888888888888888888888888 4444444 58888888888888775
Q ss_pred cccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCcccc-CCCCCcEEEcCCCeeeeecCccc
Q 042089 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG-EMKELFLLDLSRNKFSGDLSATS 243 (557)
Q Consensus 165 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~ 243 (557)
.. ...+.+.+|+.|++..|++. .+| ++. .|+.|+.++++.|.+. .+|.+.+ ++.++.+||+.+|++. +.|.++
T Consensus 198 lP-~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 198 LP-PELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred CC-hhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 42 33457788888888888877 677 443 4788888888888887 6666655 7888888888888887 777766
Q ss_pred ccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCC---CcEE-------EccCC----ccc
Q 042089 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG---LVVL-------DISNN----LLS 309 (557)
Q Consensus 244 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~---L~~L-------~Ls~n----~l~ 309 (557)
. .+.+|++||+++|.+++ +|.+++++ .|+.|.+.+|.+.. +-..+-++.. |++| -++.. .-+
T Consensus 272 c-lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 272 C-LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred H-HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 4 57788888888888874 66778888 88888888887642 1111111000 0000 00000 000
Q ss_pred CccCc----cccCCCCCcEEEcCCCcCCCCcchhhccCCC---CcEEEccCcccccccccccCCCCccE-EEccCCcccc
Q 042089 310 GHIPC----WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ---LEILYLSENRLFGSIASFLNLSSIMH-LYLQKNALSG 381 (557)
Q Consensus 310 ~~~p~----~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~i~~~~~~~~L~~-L~L~~n~l~~ 381 (557)
+..|. ....+.+.+.|++++-+++ .+|........ .+.++++.|++.........++.+++ +.+++|.++
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is- 425 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS- 425 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-
Confidence 01111 1112334555566655555 33333222222 55566666665432222223333322 333333333
Q ss_pred cchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 382 QIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 382 ~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
-+|..+..+++|..|++++|.+ ..+|..++.+..||.|+++.|+|. .+|+.+..+..++.+-.++|++.
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred cchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 5555555556666666665555 355555555555666666666555 55555555444544444445543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=289.61 Aligned_cols=362 Identities=23% Similarity=0.198 Sum_probs=190.8
Q ss_pred cEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccC
Q 042089 80 EVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159 (557)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 159 (557)
+.|++++|.++. +....+-++++|+.+++..|.+..||.......+|++|+|.+|.++ ++...-.+.++.|++|||+.
T Consensus 81 ~~LdlsnNkl~~-id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSH-IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeecccccccc-CcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 446666665542 2222344556666666666666666665555555666666666665 33333334556666666666
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeec
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (557)
|.++......+..-.++++|+|++|.++ .+...-+..+.+|..|.|+.|.++...+..|.++++|+.|+|..|++. .+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv 236 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV 236 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence 6655543333334445666666666555 333333334555555666666655444445555566666666555553 22
Q ss_pred CcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCC
Q 042089 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 319 (557)
Q Consensus 240 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~ 319 (557)
....|.++++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++.++++|+.|++|+|.+...-++.+.-+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 22334555555555555555554444445555555555555555554444555555555555555555555555555555
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccch---hhhhcCCCCcE
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIP---STLLRSTELLT 395 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p---~~l~~~~~L~~ 395 (557)
++|++|+|+.|+++..-+.+|..+..|+.|+|++|.++..-...+ .+++|++|||++|.+++.|. ..+..+++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 555555555555555555555555555555555555542211111 45555555555555554432 23344555555
Q ss_pred EeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEc
Q 042089 396 LDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446 (557)
Q Consensus 396 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldl 446 (557)
|++.+|++....-.+|..+++|+.|+|.+|-+...-|.+|..+ .|+.|-+
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 5555555543333355555555555555555554445555544 4444444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=1.7e-34 Score=286.34 Aligned_cols=364 Identities=26% Similarity=0.393 Sum_probs=246.6
Q ss_pred CCCcCEEeCCCCCCcc-cCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 3 LKNLTELDLRENNLEG-QLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++.++-+|+++|.|+| .+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++..... .++.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp---- 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG--ELSDLP---- 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh--hhccch----
Confidence 5667778888888885 47888888888888888888777 778888888888888888887652111 133344
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCC--CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccC
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL--KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 159 (557)
.|+.+.+..|++ ..||..+.++..|++||||.|++. ++|..+ +.-+++-+|+|++
T Consensus 79 ---------------------~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 79 ---------------------RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSY 135 (1255)
T ss_pred ---------------------hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEccc
Confidence 444444555555 457777777777888888888777 777765 3555555555555
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeec
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (557)
|++. +||..++-++..|-.|||++|.+. .+|+.+..+..|++|+|++|.+. ..
T Consensus 136 N~Ie-------------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hf 188 (1255)
T KOG0444|consen 136 NNIE-------------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HF 188 (1255)
T ss_pred Cccc-------------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HH
Confidence 5544 444444444455555555555554 44445555555555555555443 11
Q ss_pred CcccccCCCCCcEEeccCCccc-cccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccC
Q 042089 240 SATSVNGCASLEYLDVSENNFY-GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 318 (557)
Q Consensus 240 ~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 318 (557)
.-.....+++|++|.+++.+-+ .-+|.++..+.+|..++++.|+++ .+|..+.++++|+.|+||+|.++. +....+.
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~ 266 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGE 266 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHH
Confidence 1111123445555555554332 245667777777778888887777 677778888888888888887773 2233334
Q ss_pred CCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEE
Q 042089 319 FSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396 (557)
Q Consensus 319 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 396 (557)
-.+|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++- .||+-. .+..|+++...+|.+. .+|..+..|..|+.|
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 457788888888887 678888888888888888888752 355544 7888888888888887 788888888888888
Q ss_pred eCCCCcccccCCccccCCCCccEEEcCCCccc
Q 042089 397 DLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 397 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
.|++|++ -..|+++.-++.|++||++.|.--
T Consensus 345 ~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 345 KLDHNRL-ITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccccce-eechhhhhhcCCcceeeccCCcCc
Confidence 8888888 478888888888888888888654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.3e-34 Score=282.28 Aligned_cols=363 Identities=24% Similarity=0.304 Sum_probs=303.5
Q ss_pred CcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEcc
Q 042089 79 LEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLS 158 (557)
Q Consensus 79 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 158 (557)
.+-.|+++|+++|..-+.....+++++.|.|...++..+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhh
Confidence 334455555555332222345677888888888889999999999999999999999987 444444 378999999999
Q ss_pred CccccCcc-cCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCc-cccCCCCCcEEEcCCCeee
Q 042089 159 NNSFSGIL-QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFS 236 (557)
Q Consensus 159 ~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~ 236 (557)
+|++.... +..+..+..|+.|||+.|++. +.|..+- ..+++-+|+|++|++. .||. -+.+++.|-.|||++|++.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 99987543 123458899999999999998 8899885 4789999999999998 5665 4678999999999999997
Q ss_pred eecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccc-ccccccccCCCCCcEEEccCCcccCccCcc
Q 042089 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNLLSGHIPCW 315 (557)
Q Consensus 237 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 315 (557)
.+|+.+ .++..|++|+|++|.+.-.-...+-.+++|++|.+++.+-+ ..+|.++-.+.+|..+|+|.|.+. .+|+.
T Consensus 164 -~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 777765 68999999999999775433344556788999999998765 458899999999999999999998 68999
Q ss_pred ccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccc-cchhhhhcCCCCc
Q 042089 316 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSG-QIPSTLLRSTELL 394 (557)
Q Consensus 316 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~~~~L~ 394 (557)
+.++.+|+.|++++|+++ ++..+...+.+|+.|+++.|+++........++.|+.|.+.+|+++- -||..++++..|+
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 999999999999999998 56666777889999999999998544444499999999999999763 4899999999999
Q ss_pred EEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 395 TLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 395 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
++..++|.+ ..+|+.++.|++|+.|.|+.|++. .+|+++.-++.|.+||+..|+=-
T Consensus 320 vf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 320 VFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 999999998 588999999999999999999998 89999999999999999999754
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.9e-34 Score=294.82 Aligned_cols=418 Identities=29% Similarity=0.351 Sum_probs=316.8
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
.|+.|||++|.++ ..|..+..+++|+.|+++.|.+. ..|...+++.+|++++|.+|.+. ..|.+ +..+.+|++|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~-~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPAS-ISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchh-HHhhhccccccc
Confidence 4899999999887 77888999999999999999888 77888889999999999999887 77754 888899999999
Q ss_pred cCccCcccccCCCCCCCCc-------------------ccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHH
Q 042089 85 LKVSNNLRFKTENWIPTFQ-------------------LKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTW 144 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-------------------L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~ 144 (557)
+.|.+... |. .+..++. ++.+++..+.+ +.++..+..++. .|||+.|.+. .+.
T Consensus 122 S~N~f~~~-Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d-- 194 (1081)
T KOG0618|consen 122 SFNHFGPI-PL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD-- 194 (1081)
T ss_pred chhccCCC-ch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh--
Confidence 99887532 21 1112222 55555555555 555555555444 4777777665 221
Q ss_pred HhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCC
Q 042089 145 LMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKE 224 (557)
Q Consensus 145 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 224 (557)
...+.+|+.+....|.+... ...-++|+.|+.+.|.++...+.- ...+|++++++.|+++ .+|.|++.+.+
T Consensus 195 -ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~-~lp~wi~~~~n 265 (1081)
T KOG0618|consen 195 -LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLS-NLPEWIGACAN 265 (1081)
T ss_pred -hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecccc---ccccceeeecchhhhh-cchHHHHhccc
Confidence 23667777777777765532 123456788888888777222221 2467889999999988 56788999999
Q ss_pred CcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccc-cCCC-CCcEEE
Q 042089 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGL-LNSH-GLVVLD 302 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~~~-~L~~L~ 302 (557)
|+.++..+|.++ .+|..++ ..++|+.|.+..|.+. .+|+.....+.|++|+|..|++. ..|+.+ .... .++.++
T Consensus 266 le~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 266 LEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred ceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHh
Confidence 999999999886 7777765 5788999999888886 56777788889999999999887 444433 2222 367777
Q ss_pred ccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccc
Q 042089 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSG 381 (557)
Q Consensus 303 Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~ 381 (557)
.+.|.+.......=..++.|+.|.+.+|.+++..-+.+.+++.|++|+|++|.+......+. ++..|++|+|++|+++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 77777663322222245679999999999999988889999999999999999975444444 8999999999999999
Q ss_pred cchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc-CCccccCCCCCCEEEccCCc
Q 042089 382 QIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE-IPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 382 ~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~-ip~~l~~l~~L~~Ldls~N~ 450 (557)
.+|.++.+|..|++|...+|++. .+| .+..++.|+++|++.|+++.. +|.... -++|++||+++|.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 89999999999999999999995 777 889999999999999999854 344332 3899999999998
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5.5e-32 Score=280.33 Aligned_cols=421 Identities=27% Similarity=0.313 Sum_probs=277.8
Q ss_pred cCEEeCCCCCCcccCC-ccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 6 LTELDLRENNLEGQLP-WRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
++.|+++.|.+- ..| +.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. .+|. ...++.+|++|.+
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcchhhee
Confidence 567788887654 222 33455666999999999887 88999999999999999999998 7784 5889999999999
Q ss_pred cCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccC
Q 042089 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 164 (557)
.+|... ..| ..+..+.+|++|+++.|+++.+|..+..++.+..++.++|.....++. ..++.+++..|.+.+
T Consensus 99 ~~n~l~-~lP-~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 99 KNNRLQ-SLP-ASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGG 170 (1081)
T ss_pred ccchhh-cCc-hhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhccc
Confidence 998764 222 245678899999999999999999888877777777777722212211 115555555555555
Q ss_pred cccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcE--------------------EeCCCCcCcccCCccccCCCC
Q 042089 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML--------------------IDISKNNFEGNIPYSIGEMKE 224 (557)
Q Consensus 165 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~--------------------L~L~~n~l~~~~p~~l~~l~~ 224 (557)
........++. .++|.+|.++ ... . ..+.+|+. |+...|.++...+ -.--.+
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~-~~d--l-s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~n 242 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEME-VLD--L-SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLN 242 (1081)
T ss_pred chhcchhhhhe--eeecccchhh-hhh--h-hhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--cccccc
Confidence 43333333333 4666666544 111 1 12344444 4444444441111 112235
Q ss_pred CcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEcc
Q 042089 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDIS 304 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls 304 (557)
|+++++++|+++ .+|++ ...|.+|+.+++.+|++ ..+|..+...++|+.|.+..|.+. -+|......+.|++|+|.
T Consensus 243 l~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEW-IGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ceeeecchhhhh-cchHH-HHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 555555555555 44432 24555555555555555 244555555555555555555554 444445555556666665
Q ss_pred CCcccCccCccccCCCC-CcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccc-cccccCCCCccEEEccCCccccc
Q 042089 305 NNLLSGHIPCWIGNFSY-LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS-IASFLNLSSIMHLYLQKNALSGQ 382 (557)
Q Consensus 305 ~n~l~~~~p~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~~~~~L~~L~L~~n~l~~~ 382 (557)
.|.+....+..+..... +..+..+.|.+.......=..++.|+.|.+.+|.++.. +|.+.+.++|++|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 55554322222222211 34444444444322111112346688899999999874 45666899999999999999844
Q ss_pred chhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 383 IPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 383 ~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
....+.++..|+.|+|++|+++ .+|..+..++.|++|...+|++. ..| ++.++++|+++|+|.|+++-
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 4467788999999999999995 88999999999999999999998 778 89999999999999999975
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-22 Score=233.79 Aligned_cols=341 Identities=20% Similarity=0.209 Sum_probs=231.6
Q ss_pred ChhhhcCCCCCcEEEecCccC------cccccCCCCCCC-CcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCC
Q 042089 69 PLSLLTNHSNLEVLRLLKVSN------NLRFKTENWIPT-FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNF 141 (557)
Q Consensus 69 p~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~-~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~ 141 (557)
....|.++++|+.|.+..+.. ...+|. .+..+ .+|+.|.+.++.+..+|..+ ...+|++|+++++++. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cc
Confidence 334566777777777754421 112222 12222 35788888888777787766 4577888888888776 56
Q ss_pred cHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccC
Q 042089 142 PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGE 221 (557)
Q Consensus 142 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 221 (557)
|..+ ..+++|+.|+++++...... .....+++|+.|++++|.....+|..+. .+++|+.|++++|...+.+|..+ +
T Consensus 627 ~~~~-~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 627 WDGV-HSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred cccc-ccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-C
Confidence 6655 36788888888776533321 1244677888888888766667787775 47888888888876555677655 6
Q ss_pred CCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccc-------ccccccccC
Q 042089 222 MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT-------GKIKAGLLN 294 (557)
Q Consensus 222 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-------~~~~~~l~~ 294 (557)
+++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++... ...+.....
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 788888888887655455532 357788888888764 345443 5677777777664321 111112223
Q ss_pred CCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEc
Q 042089 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374 (557)
Q Consensus 295 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L 374 (557)
.++|+.|++++|...+.+|.+++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. ..+|++|+|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeEC
Confidence 4678888888887777788888888888888888876555677665 6788888888887655555543 357888888
Q ss_pred cCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCc
Q 042089 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY 426 (557)
Q Consensus 375 ~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 426 (557)
++|.++ .+|.++..+++|++|++++|+--..+|..+..++.|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 888887 678888888888888888754445677777778888888887774
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=6.8e-23 Score=235.72 Aligned_cols=339 Identities=19% Similarity=0.185 Sum_probs=273.6
Q ss_pred CCCCCCCCcccEEECCCCCC-------CCcChhhhCCC-CCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcc
Q 042089 95 TENWIPTFQLKVLQLPNCSL-------KVIPSFLLHQY-NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGIL 166 (557)
Q Consensus 95 ~~~~~~~~~L~~L~L~~n~l-------~~ip~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 166 (557)
..++..+.+|+.|.+..+.. ..+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+....
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccc
Confidence 34567888999999976542 35777777664 6999999999887 788765 5789999999999887542
Q ss_pred cCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccC
Q 042089 167 QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNG 246 (557)
Q Consensus 167 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 246 (557)
.....+++|+.++++++.....+|. +. .+++|+.|++++|.....+|..++++++|+.|++++|...+.+|... .
T Consensus 628 -~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~ 702 (1153)
T PLN03210 628 -DGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--N 702 (1153)
T ss_pred -cccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--C
Confidence 2234788999999999876667775 43 48999999999998777899999999999999999987555787754 6
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCccc-------CccCccccCC
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS-------GHIPCWIGNF 319 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~-------~~~p~~l~~~ 319 (557)
+++|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+.|++.++... ...+......
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 899999999999766666543 468899999999986 566654 5788888888774321 1122223345
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCC
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~ 399 (557)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|....+++|+.|++++|.....+|.. .++|+.|+++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 7899999999998889999999999999999999987778888778999999999998765566643 3679999999
Q ss_pred CCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCc
Q 042089 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 400 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~ 450 (557)
+|.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99996 789999999999999999965555788888999999999999885
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.9e-21 Score=208.53 Aligned_cols=263 Identities=27% Similarity=0.309 Sum_probs=131.0
Q ss_pred ccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcC
Q 042089 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 183 (557)
-..|+++.+.+..+|..+. .+|+.|++++|+++ .+|. ..++|++|++++|.++.... ..++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeeccC
Confidence 4456666666666665543 25666666666665 3443 23556666666665554311 123555555555
Q ss_pred CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 184 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
|.++ .+|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++. .+|.. ..+|+.|++++|.+++
T Consensus 272 N~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 272 NPLT-HLPAL----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS- 336 (788)
T ss_pred Cchh-hhhhc----hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccc-
Confidence 5554 33321 234555555555554 23321 244555555555554 23321 1234444555544432
Q ss_pred cCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccC
Q 042089 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343 (557)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 343 (557)
+|.. ..+|+.|++++|++++ +|.. ..+|..|++++|++++ +|.. .
T Consensus 337 ------------------------LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 337 ------------------------LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred ------------------------cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 2221 1244555555555442 2322 1234445555555542 3322 1
Q ss_pred CCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 344 RQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
.+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..++.++.|+.|+|+
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccC-CCCc--ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 345555555555553 3322 245566666666665 344322 34556666666664 566666666666666666
Q ss_pred CCcccccCCccc
Q 042089 424 GNYLQGEIPIAL 435 (557)
Q Consensus 424 ~N~l~g~ip~~l 435 (557)
+|+++|.+|..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 666666655544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=5.3e-21 Score=205.13 Aligned_cols=263 Identities=23% Similarity=0.288 Sum_probs=123.5
Q ss_pred CCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEEC
Q 042089 30 LKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQL 109 (557)
Q Consensus 30 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L 109 (557)
-..||++.+.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|.++. +|. ...+|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~----lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV----LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccC----cccccceeec
Confidence 344555555554 3444443 24555555555554 3332 12444444444444331 111 1134555555
Q ss_pred CCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCC
Q 042089 110 PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGT 189 (557)
Q Consensus 110 ~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 189 (557)
++|.+..+|... .+|+.|++++|+++ .+|. ..++|+.|++++|.+++.... ...|+.|++++|+++ .
T Consensus 270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~-~ 336 (788)
T PRK15387 270 FSNPLTHLPALP---SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLT-S 336 (788)
T ss_pred cCCchhhhhhch---hhcCEEECcCCccc-cccc----cccccceeECCCCccccCCCC----cccccccccccCccc-c
Confidence 555555555422 34556666666665 4443 234566666666655543211 123555556666555 3
Q ss_pred CchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCcccc
Q 042089 190 LPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269 (557)
Q Consensus 190 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (557)
+|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|..
T Consensus 337 LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l-- 400 (788)
T PRK15387 337 LPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL-- 400 (788)
T ss_pred cccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc--
Confidence 4421 235566666666655 23332 234555555555555 34421 2345555555555542 2221
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhh
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI 340 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l 340 (557)
.++|+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|..+++++.|+.|++++|.+++..+..+
T Consensus 401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 1345555555555542 3322 123445555555554 345555555555555555555555444443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=5.9e-23 Score=194.88 Aligned_cols=139 Identities=22% Similarity=0.223 Sum_probs=90.4
Q ss_pred CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCC
Q 042089 20 LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI 99 (557)
Q Consensus 20 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 99 (557)
+|..+. ..-..++|..|.++...|.+|+.+++||.||||+|.|+ .|.+..|.+++.+-.|.+.+++-...++...+.
T Consensus 61 VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 61 VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 454444 34556677777777555566777777777777777776 455566777777666666664444455666666
Q ss_pred CCCcccEEECCCCCCCCc-ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc
Q 042089 100 PTFQLKVLQLPNCSLKVI-PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 162 (557)
.+..|+.|.+.-|++..+ .+.+..++++..|.+.+|.+. .++...+..+..++.+++..|.+
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 677777777777777444 345667777777777777776 56665556677777777776664
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=6.2e-20 Score=198.22 Aligned_cols=289 Identities=22% Similarity=0.346 Sum_probs=148.8
Q ss_pred ccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcC
Q 042089 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 183 (557)
...|+++++.+..+|..+. ++++.|++++|+++ .+|..++ ++|+.|++++|.++.. |......|+.|++++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL---P~~l~~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI---PATLPDTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC---ChhhhccccEEECcC
Confidence 4555555555555554432 34555666665555 4454432 3455555555555432 211223445555555
Q ss_pred CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 184 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
|++. .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.+++
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~---------------------------~sL~~L~Ls~N~Lt~- 297 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP---------------------------EELRYLSVYDNSIRT- 297 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccC-ccccccC---------------------------CCCcEEECCCCcccc-
Confidence 5444 4444332 24444444444444 2333322 244555555554442
Q ss_pred cCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccC
Q 042089 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343 (557)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 343 (557)
+|..+ .++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 298 LPAHL--PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred Ccccc--hhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence 22221 1245556666665552 33322 2456666666666654 454443 46667777777666 3454442
Q ss_pred CCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhh----hhcCCCCcEEeCCCCcccccCCccccCCCCccE
Q 042089 344 RQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPST----LLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 419 (557)
++|+.|++++|+++. +|... ...|+.|++++|+++ .+|.. ...++.+..+++.+|+++. ..+++|+.
T Consensus 367 ~~L~~LdLs~N~Lt~-LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~ 437 (754)
T PRK15370 367 PTITTLDVSRNALTN-LPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQR 437 (754)
T ss_pred CCcCEEECCCCcCCC-CCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHH
Confidence 467777777777663 33322 135777777777776 44443 3345777888888888752 23445555
Q ss_pred EEcCCCccccc-CCccccCCCCCCEEEccCCcCcCCc
Q 042089 420 LLLRGNYLQGE-IPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 420 L~L~~N~l~g~-ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
+ ++.+.+.|. ++...+.+++++....-++...+-+
T Consensus 438 L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl 473 (754)
T PRK15370 438 L-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWL 473 (754)
T ss_pred h-hhcccccCCcccccccccccccccchHHHHHhccC
Confidence 5 445555553 3445555566665544444444433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.1e-19 Score=194.13 Aligned_cols=246 Identities=24% Similarity=0.331 Sum_probs=165.3
Q ss_pred CCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEE
Q 042089 77 SNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 156 (557)
.+...|++.++.++. +|.. + ...|+.|++++|.+..+|..+. ++|++|++++|+++ .+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~-I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPAC-I--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCcc-c--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 456789998887763 3432 1 2479999999999999998765 58999999999999 7887654 5799999
Q ss_pred ccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeee
Q 042089 157 LSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236 (557)
Q Consensus 157 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 236 (557)
+++|.+... |.....+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++
T Consensus 248 Ls~N~L~~L---P~~l~s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRITEL---PERLPSALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccCcC---ChhHhCCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc
Confidence 999998853 4333468999999999998 6887663 58999999999998 4565443 47888888888887
Q ss_pred eecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccc
Q 042089 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI 316 (557)
Q Consensus 237 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 316 (557)
.+|... .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|.++. +|..+
T Consensus 318 -~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 318 -ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred -cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhH
Confidence 455433 2567777787777764 444332 46666666666665 344433 2456666666666552 34333
Q ss_pred cCCCCCcEEEcCCCcCCCCcchh----hccCCCCcEEEccCccc
Q 042089 317 GNFSYLDVLLMSKNHLEGNIPVQ----INNFRQLEILYLSENRL 356 (557)
Q Consensus 317 ~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l 356 (557)
. ..|+.|++++|+++ .+|.. ...++.+..+++.+|++
T Consensus 387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 2 24555555555554 22322 22234444444444444
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=4.2e-20 Score=184.97 Aligned_cols=253 Identities=24% Similarity=0.249 Sum_probs=122.1
Q ss_pred ccCCcEEeCCCCcCcc----cCCccccCCCCCcEEEcCCCeeee------ecCcccccCCCCCcEEeccCCccccccCcc
Q 042089 198 LQKLMLIDISKNNFEG----NIPYSIGEMKELFLLDLSRNKFSG------DLSATSVNGCASLEYLDVSENNFYGHIFPT 267 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 267 (557)
+..|+.++++++.++. .++..+...+.++.++++++.+.+ .++. .+..+++|+.|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCCChhHHHH
Confidence 4445555555555432 123334444455555555554431 0111 1223455555555555554433333
Q ss_pred ccCccc---ccceecccccccc----cccccccCC-CCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCC
Q 042089 268 YMNLTQ---LRGLYLKNNHFTG----KIKAGLLNS-HGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 268 ~~~l~~---L~~L~L~~n~~~~----~~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..++.|++|++++|.+++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 333322 5555555555542 122233334 5666666666666532 233444555666666666666532
Q ss_pred ----cchhhccCCCCcEEEccCccccccc----cccc-CCCCccEEEccCCcccccchhhhhc-----CCCCcEEeCCCC
Q 042089 336 ----IPVQINNFRQLEILYLSENRLFGSI----ASFL-NLSSIMHLYLQKNALSGQIPSTLLR-----STELLTLDLRDN 401 (557)
Q Consensus 336 ----~~~~l~~l~~L~~L~L~~n~l~~~i----~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~L~~N 401 (557)
++..+..+++|+.|++++|.+++.. +... .+++|++|++++|.+++.....+.. .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 2233444456666666666654321 1111 4556666666666655432222221 255666666666
Q ss_pred cccc----cCCccccCCCCccEEEcCCCccccc----CCccccCC-CCCCEEEccCCcC
Q 042089 402 KFFG----RIPHQINKHSELRVLLLRGNYLQGE----IPIALCQL-QKLRILDLSHNKL 451 (557)
Q Consensus 402 ~l~~----~~p~~l~~l~~L~~L~L~~N~l~g~----ip~~l~~l-~~L~~Ldls~N~l 451 (557)
.+++ .++..+..+++|+++++++|.++.. +...+... +.|+.+|+.+|++
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 6642 2233344455666666666666643 23333333 4666666666553
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=6.8e-21 Score=180.96 Aligned_cols=290 Identities=20% Similarity=0.176 Sum_probs=213.9
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCC-CeeeeecC
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSR-NKFSGDLS 240 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~ 240 (557)
-.|...+|..-.+.-..++|..|+++ .+|...+..+++|+.|||++|.|+..-|.+|..++++..|.+.+ |+|+ .+|
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLP 132 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhh
Confidence 33444455555556778999999998 88888888899999999999999999999999999988887766 8888 899
Q ss_pred cccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccC----------
Q 042089 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG---------- 310 (557)
Q Consensus 241 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~---------- 310 (557)
...|.++..++.|.+.-|++.......+..++++..|.+.+|.+...-...+.....++.+++..|.+..
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 9999999999999999999988888889999999999999999884444478888999999998887431
Q ss_pred --ccCccccCCCCCcEEEcCCCcCCCCcchhhccC-CCCcEEEccCccccccccc-cc-CCCCccEEEccCCcccccchh
Q 042089 311 --HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF-RQLEILYLSENRLFGSIAS-FL-NLSSIMHLYLQKNALSGQIPS 385 (557)
Q Consensus 311 --~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~i~~-~~-~~~~L~~L~L~~n~l~~~~p~ 385 (557)
..|..++...-..-..+.+.++..+-+..+... ..+..=-.+.+...+..|. ++ .+++|+.|+|++|++++.-+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 122222222222222233333332222222211 1221111223333333343 33 788888999999998888888
Q ss_pred hhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 386 TLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 386 ~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
+|.....++.|.|..|++...--..|.++..|+.|+|.+|+++-.-|.+|..+..|..|.+-.|+|..
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 88888889999999988865555667788888999999999988888888888889999988888853
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.2e-18 Score=174.40 Aligned_cols=136 Identities=25% Similarity=0.372 Sum_probs=76.1
Q ss_pred ccCCCCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccccc-ccc
Q 042089 292 LLNSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLFGS-IAS 362 (557)
Q Consensus 292 l~~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-i~~ 362 (557)
+..++.|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. +..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 33444555555555555531 222333445566666666655533 233445566677777777766541 111
Q ss_pred cc-----CCCCccEEEccCCcccc----cchhhhhcCCCCcEEeCCCCccccc----CCccccCC-CCccEEEcCCCcc
Q 042089 363 FL-----NLSSIMHLYLQKNALSG----QIPSTLLRSTELLTLDLRDNKFFGR----IPHQINKH-SELRVLLLRGNYL 427 (557)
Q Consensus 363 ~~-----~~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l 427 (557)
.. ..+.|++|++++|.+++ .++..+..+++|+++++++|+++.. +...+... +.|+++++.+|.+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 11 23677777777777752 2445566667788888888887654 33333333 5677777777653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.6e-18 Score=144.59 Aligned_cols=178 Identities=29% Similarity=0.491 Sum_probs=92.0
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEcc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 352 (557)
.++.|.+++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.++.|+.|.+.-|++. ..|..|+.++.|++||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3333444444443 23333333444444444444433 23334444444444444444443 445555555555666666
Q ss_pred Cccccc-cccc-ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 353 ENRLFG-SIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 353 ~n~l~~-~i~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
+|++.. .+|. ++.+..|+.|+|++|.+. .+|..++++++|+.|.+..|.+- +.|..++.++.|+.|.+.+|+++ .
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 555543 3333 225556666666666665 56666666666666666666663 56666666666666666666666 5
Q ss_pred CCccccCCC---CCCEEEccCCcCcCCcC
Q 042089 431 IPIALCQLQ---KLRILDLSHNKLNGSIP 456 (557)
Q Consensus 431 ip~~l~~l~---~L~~Ldls~N~l~g~ip 456 (557)
+|.+++++. +=+++.+.+|+....|.
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 555554432 22334445555544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.7e-17 Score=139.33 Aligned_cols=154 Identities=28% Similarity=0.410 Sum_probs=95.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
.+.+.|-||.|.++ .+|+.++.+.+|++|++++|+++ .+|..++.+++|+.|+++-|++. ..|. .|+.++-|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhhh
Confidence 44555666666665 45666666666666666666666 56666666666666666666665 4553 366666666666
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcccc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS 163 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 163 (557)
+.+|.++...-+..++.+..|+.|.+++|.+..+|..++.+++||.|.++.|.+- ++|..+. .+++|++|++.+|.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhcccceee
Confidence 6666665444343445555666666666666666666666666666666666665 5666653 5556666655555554
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=4e-13 Score=134.14 Aligned_cols=194 Identities=29% Similarity=0.422 Sum_probs=126.9
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEE
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 326 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~ 326 (557)
+.--...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+..+..|++++++.|+++ ..|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344455677777775 56666777777777777777776 66777777777777777777776 4566666553 66777
Q ss_pred cCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc
Q 042089 327 MSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 327 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
+++|+++ .+|..++..+.|..||.+.|.+....+....+.+|+.|.+..|++. .+|..+. +-.|..||+++|+++ .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 7777766 5666666667777777777776654455556667777777777766 4555555 334667777777764 6
Q ss_pred CCccccCCCCccEEEcCCCcccccCCccccCCCCC---CEEEccCC
Q 042089 407 IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKL---RILDLSHN 449 (557)
Q Consensus 407 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L---~~Ldls~N 449 (557)
+|..|.++..|++|.|.+|.+. .-|..+|...++ ++|+..-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 6667777777777777777666 445555544433 33444444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=5.5e-13 Score=133.15 Aligned_cols=196 Identities=29% Similarity=0.353 Sum_probs=166.5
Q ss_pred CCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcE
Q 042089 221 EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300 (557)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~ 300 (557)
.+.--...|++.|++. ++|.+. ..+..|+.+.+..|.+. .+|..+.++..|++++++.|++. ..|..++.++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3455567899999998 888776 46788999999999885 68888999999999999999998 6777776665 899
Q ss_pred EEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCccc
Q 042089 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALS 380 (557)
Q Consensus 301 L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~ 380 (557)
|.+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++....+... .-.|..||++.|+++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee
Confidence 999999987 68888888899999999999998 688889999999999999999986555555 556899999999998
Q ss_pred ccchhhhhcCCCCcEEeCCCCcccccCCccc---cCCCCccEEEcCCCc
Q 042089 381 GQIPSTLLRSTELLTLDLRDNKFFGRIPHQI---NKHSELRVLLLRGNY 426 (557)
Q Consensus 381 ~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~ 426 (557)
.+|-.|.+++.|++|-|.+|.+. ..|..+ |...-.++|+..-++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 89999999999999999999995 566665 345567888888885
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=5.4e-11 Score=128.54 Aligned_cols=110 Identities=32% Similarity=0.437 Sum_probs=59.4
Q ss_pred CcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 346 LEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
++.|+|++|.+.|.+|... .+++|+.|+|++|+++|.+|..+..+++|+.|++++|+++|.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4455555555555554433 455555555555555555555555555555555555555555555555555555555555
Q ss_pred CcccccCCccccCC-CCCCEEEccCCcCcCCc
Q 042089 425 NYLQGEIPIALCQL-QKLRILDLSHNKLNGSI 455 (557)
Q Consensus 425 N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~i 455 (557)
|+++|.+|..+... .++..+++++|+..+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC
Confidence 55555555554432 24445555555544443
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=5.4e-11 Score=128.59 Aligned_cols=95 Identities=35% Similarity=0.524 Sum_probs=91.1
Q ss_pred CccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEcc
Q 042089 368 SIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLS 447 (557)
Q Consensus 368 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls 447 (557)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCCcCcccccc
Q 042089 448 HNKLNGSIPSCFANV 462 (557)
Q Consensus 448 ~N~l~g~ip~~~~~l 462 (557)
+|+++|.+|..++..
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999999999987653
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=5.5e-11 Score=122.67 Aligned_cols=154 Identities=32% Similarity=0.445 Sum_probs=81.3
Q ss_pred CCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEcc
Q 042089 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQ 375 (557)
Q Consensus 297 ~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~ 375 (557)
+|+.|++++|.+. .+|..++.++.|+.|++++|+++ .+|...+..++|+.|++++|++. .+|... ....|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 4444444444433 22233444444455555554444 33333334455555555555554 233332 33445566666
Q ss_pred CCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCc
Q 042089 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 376 ~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
+|... .++..+.++..+..+.+.+|++. .++..++.+++++.|++++|+++ .++. +..+.+++.+|+++|.++..+
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 66432 34555666666666666666653 33556666666666666666666 3333 666666777777776666555
Q ss_pred Cc
Q 042089 456 PS 457 (557)
Q Consensus 456 p~ 457 (557)
|.
T Consensus 294 ~~ 295 (394)
T COG4886 294 PL 295 (394)
T ss_pred hh
Confidence 44
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-11 Score=116.72 Aligned_cols=232 Identities=22% Similarity=0.247 Sum_probs=105.9
Q ss_pred CCCcCEEeCCCCCCccc----CCccCCCCCCCCEEECCCCcCCc----cCchh-------ccCCCCCCEEeCcCcccCcc
Q 042089 3 LKNLTELDLRENNLEGQ----LPWRLSDLTGLKVFDISSNQLSG----NLPSV-------IANLTSLEYLVLSDNNFQGE 67 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~-------l~~l~~L~~L~Ls~n~l~g~ 67 (557)
+..++.++|++|.|... +...+.+.+.|+..++|.- ++| .+|+. +..+++|++||||+|-|.-.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34566677777666432 4445566666666666643 332 23322 33455666666666665432
Q ss_pred cChh---hhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh--------------hhhCCCCCcEE
Q 042089 68 FPLS---LLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS--------------FLLHQYNLKFL 130 (557)
Q Consensus 68 ~p~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~--------------~l~~~~~L~~L 130 (557)
.+.. .+.++..|++|.+.+| .+|..-. ....-+.|+++
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~-------------------------Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNC-------------------------GLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcC-------------------------CCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 2221 2344455555555444 4422111 11223345555
Q ss_pred EccCCcCcCCCc---HHHhhcCCCCCEEEccCccccCccc----CCcccCCCccEEECcCCcCcCCCchhHhh---hccC
Q 042089 131 DLSSNKLVGNFP---TWLMQNNTNLEVLRLSNNSFSGILQ----LPKVKHDFLRHLDISNNNLIGTLPQNMGT---VLQK 200 (557)
Q Consensus 131 ~Ls~n~l~~~~p---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~l~~ 200 (557)
..++|++-..-. ...++..+.|+.+.+..|.+..... ..+..+++|++|||..|.|+......++. .+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 555555432111 1122334455555555554432211 01224555555555555554332222221 2345
Q ss_pred CcEEeCCCCcCcccCCccc-----cCCCCCcEEEcCCCeeeee---cCcccccCCCCCcEEeccCCcc
Q 042089 201 LMLIDISKNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGD---LSATSVNGCASLEYLDVSENNF 260 (557)
Q Consensus 201 L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~~L~~L~Ls~n~l 260 (557)
|+.+++++|.+...-..++ ...++|+++.+.+|.++-. .........+.|+.|+|++|.+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5556666655542221111 1245666666666665421 1111112245666666666666
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.5e-11 Score=117.95 Aligned_cols=162 Identities=21% Similarity=0.155 Sum_probs=106.4
Q ss_pred CCCcccEEECCCCCCCCcC--hhhhCCCCCcEEEccCCcCcCCC-cHHHhhcCCCCCEEEccCccccCcccC-CcccCCC
Q 042089 100 PTFQLKVLQLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNF-PTWLMQNNTNLEVLRLSNNSFSGILQL-PKVKHDF 175 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~ip--~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~ 175 (557)
+..+|+.+.|+++..+..+ +....|++++.|||+.|-+..-. -..+.+.+++|+.|+++.|.+...... ....++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4457888888888886666 46778888999999988766311 123456788899999998887643211 1235677
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
|+.|.++.|.++-.--.++...+++|+.|++..|...+.-.....-+..|+.|||++|++...-.-.....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 88888888887744444444567888888888885333333344556677788888777652221122345666777777
Q ss_pred cCCccc
Q 042089 256 SENNFY 261 (557)
Q Consensus 256 s~n~l~ 261 (557)
+.+.+.
T Consensus 279 s~tgi~ 284 (505)
T KOG3207|consen 279 SSTGIA 284 (505)
T ss_pred cccCcc
Confidence 766664
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.5e-10 Score=102.88 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCCEEECCCCcCCccCchhcc-CCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEE
Q 042089 29 GLKVFDISSNQLSGNLPSVIA-NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVL 107 (557)
Q Consensus 29 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 107 (557)
+++.|+|.+|.++. + +.++ .+.+|+.|+|++|.++ .++ .+..++.|++|++++|......+ .....+++|++|
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CH-HHHHH-TT--EE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcccc-chHHhCCcCCEE
Confidence 44444444444442 1 1232 2344444444444444 222 13344444444444444432110 000124455555
Q ss_pred ECCCCCCCCcC--hhhhCCCCCcEEEccCCcCcCCC--cHHHhhcCCCCCEEEcc
Q 042089 108 QLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNF--PTWLMQNNTNLEVLRLS 158 (557)
Q Consensus 108 ~L~~n~l~~ip--~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~l~~L~~L~L~ 158 (557)
++++|.+..+. ..+..+++|++|++.+|.++..- ...+...+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 55555552222 34667788888888888776331 22344578888888754
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=1.6e-10 Score=119.10 Aligned_cols=199 Identities=29% Similarity=0.410 Sum_probs=103.0
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCC-CCcEEeccCCccccccCccccCcccccceeccc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCA-SLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
.+++..+.+...+ ..+...+.++.+++.+|.++ .++.... ... +|+.|+++.|.+. .++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 3455555543222 22334455666666666655 4443331 221 4555555555553 2223344444555555555
Q ss_pred ccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc
Q 042089 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 282 n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~ 361 (557)
|+++ .+|.. .+..+.|+.|++++|++. .+|........|+++.+++|+....+.
T Consensus 173 N~l~-~l~~~------------------------~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~ 226 (394)
T COG4886 173 NDLS-DLPKL------------------------LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS 226 (394)
T ss_pred chhh-hhhhh------------------------hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch
Confidence 5444 23332 224444555555555554 334333334445566666654333333
Q ss_pred cccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc
Q 042089 362 SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434 (557)
Q Consensus 362 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 434 (557)
....+..+..+.+.+|++. .++..+..++.+++|++++|+++.. +. ++.+..++.|++++|.+....|..
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 3335555666666666655 2355666777777777777777533 32 667777777777777777555543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=3.4e-11 Score=113.95 Aligned_cols=243 Identities=24% Similarity=0.320 Sum_probs=131.2
Q ss_pred ccCCcEEeCCCCcCcc----cCCccccCCCCCcEEEcCCCeeeee----cCccc------ccCCCCCcEEeccCCccccc
Q 042089 198 LQKLMLIDISKNNFEG----NIPYSIGEMKELFLLDLSRNKFSGD----LSATS------VNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~------~~~~~~L~~L~Ls~n~l~~~ 263 (557)
...++.+++++|.+.. .+...+.+.+.|+..++++- ++|. +|+.. .-.+++|++++||.|-+.-.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4567777777777643 22333455566776666542 2332 22211 12344555555555544322
Q ss_pred cCcc----ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC----
Q 042089 264 IFPT----YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN---- 335 (557)
Q Consensus 264 ~~~~----~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~---- 335 (557)
.++. +..+..|++|.|.+|.+...-...++ ..|..|. .......-+.|+++...+|++...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeeccccccccHHH
Confidence 2221 22344444444444443211000000 0000000 111223345566666666666532
Q ss_pred cchhhccCCCCcEEEccCcccccc-c----ccccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCccccc
Q 042089 336 IPVQINNFRQLEILYLSENRLFGS-I----ASFLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 336 ~~~~l~~l~~L~~L~L~~n~l~~~-i----~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
+...+..++.|+.+.++.|.+... + -.+..+++|++|||++|.|+-. +...+..+++|+.|++++|.+...
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 334455667777777777766321 1 1222677777777777777532 345556667788888888877655
Q ss_pred CCccc-----cCCCCccEEEcCCCccccc----CCccccCCCCCCEEEccCCcCc
Q 042089 407 IPHQI-----NKHSELRVLLLRGNYLQGE----IPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 407 ~p~~l-----~~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
....+ ...|.|++|.|.+|.++.. +..++...+.|..|+|++|.+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 44333 2367888888888888742 3345567888999999999984
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=1.2e-10 Score=107.79 Aligned_cols=129 Identities=27% Similarity=0.246 Sum_probs=76.4
Q ss_pred CCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 321 YLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 321 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
.|+++|+++|.++ .+.++..-.|.+++|++++|.+. .+.....+++|+.|||++|.++ .+..+-.++.+.++|.|+.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 3455555555554 44444555556666666666554 2333335566666666666665 3444444556666677777
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccC-CccccCCCCCCEEEccCCcCcCC
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEI-PIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
|.+. --..++.+-+|..||+++|++...- ...++++|.|+++.|.+|++++.
T Consensus 362 N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 362 NKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 6652 1234455556677777777776422 24577888888888888888754
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7e-11 Score=114.87 Aligned_cols=186 Identities=25% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCCCCCCEEECCCCcCCccCc--hhccCCCCCCEEeCcCcccCcccCh-hhhcCCCCCcEEEecCccCcccccCCCCCCC
Q 042089 25 SDLTGLKVFDISSNQLSGNLP--SVIANLTSLEYLVLSDNNFQGEFPL-SLLTNHSNLEVLRLLKVSNNLRFKTENWIPT 101 (557)
Q Consensus 25 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~g~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 101 (557)
+++.+|+.+.|.++... ..+ .....|++++.||||.|-|..-.|. .+...+++|+.|+++.|.+........-.
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-- 194 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--
Confidence 34556666666655544 222 2344566666666666655421111 12334555555555555443222111111
Q ss_pred CcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEEC
Q 042089 102 FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181 (557)
Q Consensus 102 ~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 181 (557)
.++.|+.|.++.|.++-.--.++...+|+|+.|+|.+|...+....+...++.|+.|+|
T Consensus 195 ---------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 195 ---------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ---------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 23344555555555442222233334555555555555422222222334445555555
Q ss_pred cCCcCcCCCc-hhHhhhccCCcEEeCCCCcCccc-CCcc-----ccCCCCCcEEEcCCCee
Q 042089 182 SNNNLIGTLP-QNMGTVLQKLMLIDISKNNFEGN-IPYS-----IGEMKELFLLDLSRNKF 235 (557)
Q Consensus 182 ~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l 235 (557)
++|++...-. ...+ .++.|+.|.++.+.+... +|+. ....++|++|++..|++
T Consensus 254 s~N~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cCCcccccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555542211 1122 355555555555554321 1211 23344555555555554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=5.2e-10 Score=99.44 Aligned_cols=121 Identities=27% Similarity=0.364 Sum_probs=33.2
Q ss_pred CCcEEEcCCCcCCCCcchhhc-cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh-hcCCCCcEEeC
Q 042089 321 YLDVLLMSKNHLEGNIPVQIN-NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL-LRSTELLTLDL 398 (557)
Q Consensus 321 ~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~L 398 (557)
.+++|++.+|.|+. + +.++ .+.+|+.|++++|.++. ++.+..++.|++|++++|+++. ++..+ ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEEC
Confidence 34444444444442 1 1222 34455555555555542 3333345566666666666653 32233 34566666666
Q ss_pred CCCccccc-CCccccCCCCccEEEcCCCcccccCC---ccccCCCCCCEEE
Q 042089 399 RDNKFFGR-IPHQINKHSELRVLLLRGNYLQGEIP---IALCQLQKLRILD 445 (557)
Q Consensus 399 ~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip---~~l~~l~~L~~Ld 445 (557)
++|+|... .-..+..+++|++|+|.+|.++..-- ..+..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66666431 11334455666666666665553210 1234555555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.1e-10 Score=107.99 Aligned_cols=130 Identities=30% Similarity=0.344 Sum_probs=77.3
Q ss_pred CCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEc
Q 042089 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374 (557)
Q Consensus 295 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L 374 (557)
+..|+.+|||+|.++ .+.++..-.+.++.|++++|.+... ..++.+++|+.|||++|.++....+...+.+++.|.|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 455666777776665 3444455556666777777766522 2266666777777777766543333336666667777
Q ss_pred cCCcccccchhhhhcCCCCcEEeCCCCcccc-cCCccccCCCCccEEEcCCCcccc
Q 042089 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFG-RIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 375 ~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
+.|.+.. -..+.++-+|..||+++|+|.. .-...++++|.|+.+.|.+|.+.+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7766542 2345555666677777776632 122456666667777777776664
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=7.3e-09 Score=114.69 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=90.3
Q ss_pred CCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCccc-CcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCccc
Q 042089 27 LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF-QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLK 105 (557)
Q Consensus 27 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 105 (557)
....+...+-+|.+. .++... .+++|++|-+..|.- -..++..+|..++.|++||+++|.--+..|. .++.+.+|+
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhh
Confidence 356666666666665 344333 345788888888751 2366666788888888888887665555555 356777888
Q ss_pred EEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 106 VLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 106 ~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
+|++++..+..+|..+.++..|.+|++..+.-...+|. +...+++|++|.+....
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 88888888888888888888888888887765544443 33367888888776554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.3e-09 Score=76.82 Aligned_cols=61 Identities=41% Similarity=0.606 Sum_probs=43.0
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCccc
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 64 (557)
|+|++|++++|.++..-+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777755456677777777777777777766666777777777777777754
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=6.5e-09 Score=75.85 Aligned_cols=61 Identities=38% Similarity=0.471 Sum_probs=41.1
Q ss_pred CCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcC
Q 042089 391 TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 391 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l 451 (557)
++|++|++++|+++...+.++..+++|++|++++|+++...|.+|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766655555666677777777777777666566677777777777777764
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=1.8e-08 Score=111.67 Aligned_cols=310 Identities=22% Similarity=0.233 Sum_probs=167.0
Q ss_pred CCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc--ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCc
Q 042089 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS--FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLM 202 (557)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 202 (557)
...+...+-+|.+. .++... .+++|++|-+..|. +......-+..++.|++|||++|.--+.+|..++. +-+|+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR 598 (889)
T ss_pred hheeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence 34566666666554 333322 45567776666664 22221111335677777777776655677777764 77788
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCcc--ccccCccccCcccccceecc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNF--YGHIFPTYMNLTQLRGLYLK 280 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~ 280 (557)
+|+++++.+. .+|..+++++.|.+|++..+.....+ ......+++|++|.+..... .......+..+.+|+.+...
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 8888887777 77778888888888888776644333 33444577788877765542 11222233445555555543
Q ss_pred cccccccccccccCCCCCc----EEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhcc------CCCCcEEE
Q 042089 281 NNHFTGKIKAGLLNSHGLV----VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN------FRQLEILY 350 (557)
Q Consensus 281 ~n~~~~~~~~~l~~~~~L~----~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~ 350 (557)
..... +-..+.....|. .+.+.++. ....+..++.+.+|+.|.+.++.+.......... ++++..+.
T Consensus 677 ~~s~~--~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 677 ISSVL--LLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred cchhH--hHhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 33220 001111122222 22221211 1233445666778888888877765322221111 22333333
Q ss_pred ccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc-CCccccCCCCccEEEcCCCcccc
Q 042089 351 LSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR-IPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 351 L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
..++.....+......++|+.|.+..+.....+.+....+..+..+-+..+.+.+. .-.+.+.++++..+.+..=
T Consensus 754 ~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~---- 829 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL---- 829 (889)
T ss_pred hhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCcc----
Confidence 33333222222223678899999998886656655666666666666666666554 3445555555555544322
Q ss_pred cCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 430 EIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 430 ~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
.|+.+.+..|+-.+.+|.
T Consensus 830 ----------~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 830 ----------KLEELIVEECPKLGKLPL 847 (889)
T ss_pred ----------chhheehhcCcccccCcc
Confidence 255555555555555553
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.9e-10 Score=102.50 Aligned_cols=155 Identities=25% Similarity=0.172 Sum_probs=82.4
Q ss_pred CcCEEeCCCCCCccc-CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcc-cCcccChhhhcCCCCCcEE
Q 042089 5 NLTELDLRENNLEGQ-LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN-FQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~g~~p~~~~~~l~~L~~L 82 (557)
.|+++|||...++.. +..-++.|++|+.|.|.++++...+-..+++-.+|+.|+|+.+. |+..--.-.+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466677777666532 33445667777777777777776666677777777777777654 3321111235566677777
Q ss_pred EecCccCcccccCCCCCC-CCcccEEECCCCCC----CCcChhhhCCCCCcEEEccCCc-CcCCCcHHHhhcCCCCCEEE
Q 042089 83 RLLKVSNNLRFKTENWIP-TFQLKVLQLPNCSL----KVIPSFLLHQYNLKFLDLSSNK-LVGNFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l----~~ip~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~ 156 (557)
+++++....+........ ...|+.|+++++.- .++..-..+|++|.+|||++|. ++..+...++ +++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence 776666543332211111 12455566655432 2333334455566666665543 3332223332 445555555
Q ss_pred ccCc
Q 042089 157 LSNN 160 (557)
Q Consensus 157 L~~n 160 (557)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 5444
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=5e-09 Score=108.38 Aligned_cols=126 Identities=26% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
..++.+++..|.+.. +-..+..+++|++|++..|++.. +...+..+++|++|++++|.|+...+ +..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhhe
Confidence 344445555555542 23345666666666666666663 22225566666666666666653322 44445555555
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcC
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKL 137 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l 137 (557)
+.+|.....- .+..+..|+.+++++|.+..+... +..+.+++.+++.+|.+
T Consensus 147 l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 147 LSGNLISDIS---GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred eccCcchhcc---CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 5555443211 112234455555555554433332 23444444444444443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.1e-08 Score=105.92 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=10.5
Q ss_pred CCCCccEEEccCCcccccc
Q 042089 365 NLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 365 ~~~~L~~L~L~~n~l~~~~ 383 (557)
..+.++...+..|......
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccccccccccCcccccc
Confidence 4455566666666555433
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.1e-09 Score=96.28 Aligned_cols=181 Identities=20% Similarity=0.196 Sum_probs=102.6
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCe-eeeecCcccccCCCCCcEE
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK-FSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L 253 (557)
.|+++||+...++..--..+...|++|+.|.+.++.+...+...++.-..|+.|+++.+. ++..-...+++.|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888888777644444444567888888888888888887888888888888888764 5533344556778888888
Q ss_pred eccCCccccccCcccc--CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCc
Q 042089 254 DVSENNFYGHIFPTYM--NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~ 331 (557)
++++|.+..+....+. --++|+.|+++++.-. -....+......|++|.+||+++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeecccccc
Confidence 8888876543321111 1134555555544211 0000111122334445555555432
Q ss_pred -CCCCcchhhccCCCCcEEEccCccccccccc----ccCCCCccEEEccCCc
Q 042089 332 -LEGNIPVQINNFRQLEILYLSENRLFGSIAS----FLNLSSIMHLYLQKNA 378 (557)
Q Consensus 332 -l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~----~~~~~~L~~L~L~~n~ 378 (557)
++......+..++.|++|.++.|-. .+|. +...++|.+|++.++-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 3333333444555555555555542 2222 1145666666666553
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=2.2e-07 Score=86.56 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=69.7
Q ss_pred ccCCccCCCCCCCCEEECCCCcCCccC-chhc-cCCCCCCEEeCcCcccCc--ccChhhhcCCCCCcEEEecCccCcccc
Q 042089 18 GQLPWRLSDLTGLKVFDISSNQLSGNL-PSVI-ANLTSLEYLVLSDNNFQG--EFPLSLLTNHSNLEVLRLLKVSNNLRF 93 (557)
Q Consensus 18 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l-~~l~~L~~L~Ls~n~l~g--~~p~~~~~~l~~L~~L~l~~~~~~~~~ 93 (557)
|..+-.++..+-++.+.+.++.+...- -..| ..++.++++||.+|.++. +|. ..+.++|.|++|+++.|+++..+
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I 113 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDI 113 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCcc
Confidence 334444555556666666666554221 1233 357788889999988762 222 24567888888888888876554
Q ss_pred cCCCCCCCCcccEEECCCCCC--CCcChhhhCCCCCcEEEccCC
Q 042089 94 KTENWIPTFQLKVLQLPNCSL--KVIPSFLLHQYNLKFLDLSSN 135 (557)
Q Consensus 94 ~~~~~~~~~~L~~L~L~~n~l--~~ip~~l~~~~~L~~L~Ls~n 135 (557)
.... ....+|+.|-|.+..+ ......+..++.++.|.++.|
T Consensus 114 ~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 114 KSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4322 3445666676666665 444455555556666666655
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3.3e-08 Score=102.15 Aligned_cols=128 Identities=30% Similarity=0.297 Sum_probs=90.2
Q ss_pred CCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEe
Q 042089 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLID 205 (557)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 205 (557)
.|...+++.|.+. .+...+ +-++.++.|+|++|+++.. .....+++|++|||++|.+. .+|..--..|. |..|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 3566677777776 444444 4678888889999888876 34557888899999998887 66653322343 88888
Q ss_pred CCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccc
Q 042089 206 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFY 261 (557)
Q Consensus 206 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 261 (557)
+.+|.++.. ..+.++++|+.||+++|-+.+.-.-.....+..|+.|+|.+|.+.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888887632 356788888889999888775433333445677888888888663
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=9.4e-07 Score=81.39 Aligned_cols=85 Identities=28% Similarity=0.464 Sum_probs=45.0
Q ss_pred CCCcCEEeCCCCCCccc----CCccCCCCCCCCEEECCCCcCCcc----Cc-------hhccCCCCCCEEeCcCcccCcc
Q 042089 3 LKNLTELDLRENNLEGQ----LPWRLSDLTGLKVFDISSNQLSGN----LP-------SVIANLTSLEYLVLSDNNFQGE 67 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p-------~~l~~l~~L~~L~Ls~n~l~g~ 67 (557)
+..++.++||+|.|... +...+++-++|++.++|.- ++|. +| ..+-+|++|+..+||.|.|...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 34566667777766543 3334555566666666643 2221 22 2344566666666666666555
Q ss_pred cChh---hhcCCCCCcEEEecCcc
Q 042089 68 FPLS---LLTNHSNLEVLRLLKVS 88 (557)
Q Consensus 68 ~p~~---~~~~l~~L~~L~l~~~~ 88 (557)
.|+. .+++.+.|.+|.+.+|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 5532 23444555555555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=6.6e-08 Score=99.97 Aligned_cols=124 Identities=28% Similarity=0.313 Sum_probs=58.3
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchh-hhhcCCCCcEEeCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPS-TLLRSTELLTLDLRD 400 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~L~~ 400 (557)
|...+++.|.+. .+..++.-++.++.|+|++|+++. ......++.|.+|||++|.+. .+|. ....|. |+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 334444445444 344444445555555555555543 223334555555555555555 3332 222233 55555555
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccCC-ccccCCCCCCEEEccCCcC
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIP-IALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip-~~l~~l~~L~~Ldls~N~l 451 (557)
|.++. -..+.++.+|+.||++.|-+.+.-- .-+..+..|+.|.|.+|++
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55532 1234455555555555555544321 1123444555555555555
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=7.6e-07 Score=81.97 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred ccCcccccceecccccccccccc----cccCCCCCcEEEccCCccc
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKA----GLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~----~l~~~~~L~~L~Ls~n~l~ 309 (557)
+..|++|+.+++++|.|....|. .+++...|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34555666666666655544333 2344456666666666543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=3.7e-07 Score=75.38 Aligned_cols=109 Identities=24% Similarity=0.263 Sum_probs=50.0
Q ss_pred CCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 345 QLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
.|+..+|++|.+....+.+. ..+.++.+++++|.++ .+|..++.++.|+.|+++.|++. ..|+.+..+.++-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 34444555554443333333 3344555555555555 34544555555555555555553 444444445555555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 424 GNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 424 ~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+|... +||..+-.-...-..++.++++.+.-|
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 55544 344332222222233444444444433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=9.1e-06 Score=54.31 Aligned_cols=37 Identities=41% Similarity=0.651 Sum_probs=23.6
Q ss_pred CCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccC
Q 042089 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65 (557)
Q Consensus 28 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 65 (557)
++|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35667777777776 45556677777777777777665
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=2.4e-06 Score=79.83 Aligned_cols=204 Identities=17% Similarity=0.123 Sum_probs=119.6
Q ss_pred EEeCCCCCCccc--CCccCCCCCCCCEEECCCCcCCc--cCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 8 ELDLRENNLEGQ--LPWRLSDLTGLKVFDISSNQLSG--NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 8 ~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
.+.+.++.+... ....=..+++++.+||.+|.++. .+..-+.++|.|+.|+|+.|.+...|.. .-....+|++|.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEE
Confidence 445555555432 11112456888888999888874 4445567888899999999888755542 113567888888
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCc--Chh-hh-CCCCCcEEEccCCcCcC--CCcHHHhhcCCCCCEEEc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI--PSF-LL-HQYNLKFLDLSSNKLVG--NFPTWLMQNNTNLEVLRL 157 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~-l~-~~~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~L 157 (557)
+.+..+.-.........++.++.|.++.|.+..+ .+. .. -.+.+++|.+..|...- .+. .+..-++++..+.+
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSVFV 206 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH-hHHhhcccchheee
Confidence 8777665333333455667778888887754211 110 00 01234444444442210 000 11224577888888
Q ss_pred cCccccCcccCC-cccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcc
Q 042089 158 SNNSFSGILQLP-KVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213 (557)
Q Consensus 158 ~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 213 (557)
..|.+....... +..++.+..|.|+.+++.......-...+++|+.|.++++.+..
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 888665442221 22556666788888887644333333457889999999987753
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.86 E-value=5.3e-07 Score=87.89 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=88.7
Q ss_pred Ccccccceeccccccccccc--ccccCCCCCcEEEccCCc-ccCccCccc-cCCCCCcEEEcCCCcCC--CCcchhhccC
Q 042089 270 NLTQLRGLYLKNNHFTGKIK--AGLLNSHGLVVLDISNNL-LSGHIPCWI-GNFSYLDVLLMSKNHLE--GNIPVQINNF 343 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~--~~l~~~~~L~~L~Ls~n~-l~~~~p~~l-~~~~~L~~L~l~~n~l~--~~~~~~l~~l 343 (557)
.+..|+.++.+++...+..+ .--.++++|+++.++.++ |+..--..+ .+++.|+.+++.++... +.+...-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45566666666654432211 112345677777777764 333322233 24667777777776543 2233334567
Q ss_pred CCCcEEEccCccccccc-----cccc-CCCCccEEEccCCcc-cccchhhhhcCCCCcEEeCCCCccc-cc-CCccccCC
Q 042089 344 RQLEILYLSENRLFGSI-----ASFL-NLSSIMHLYLQKNAL-SGQIPSTLLRSTELLTLDLRDNKFF-GR-IPHQINKH 414 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i-----~~~~-~~~~L~~L~L~~n~l-~~~~p~~l~~~~~L~~L~L~~N~l~-~~-~p~~l~~l 414 (557)
+.|+.+.++++...... .... ....++.+.|+++.. ++..-..+..|++|+.+++-.++-. .+ +...-.++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88888888887653321 1222 567788888888874 4445567788889998888777532 11 22222457
Q ss_pred CCccEEEc
Q 042089 415 SELRVLLL 422 (557)
Q Consensus 415 ~~L~~L~L 422 (557)
|++++..+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 77766544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=6.9e-06 Score=89.07 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=84.4
Q ss_pred CCCCEEeCcCccc-CcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEE
Q 042089 52 TSLEYLVLSDNNF-QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFL 130 (557)
Q Consensus 52 ~~L~~L~Ls~n~l-~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L 130 (557)
.+|++||+++... ...-|...-..+|.|++|.+.+-.+...--.....+.++|..||++++++..+ ..++++++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4678888877542 22222233345777888877776553221111234566777777777777666 667777777777
Q ss_pred EccCCcCcC-CCcHHHhhcCCCCCEEEccCccccCcccCC------cccCCCccEEECcCCcCcCCCchhHhhhccCCcE
Q 042089 131 DLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFSGILQLP------KVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML 203 (557)
Q Consensus 131 ~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 203 (557)
.+.+-.+.. .--..+| ++++|++||+|.........+. ...+++|+.||.+++.+.+.+-+.+-..-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 777666552 2223455 6777777777766544331111 1245566666666665554444443333333433
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=9.4e-07 Score=73.06 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEcc
Q 042089 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQ 375 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~ 375 (557)
..|+..++++|.+....+..-.+.+.++.+++++|.++ .+|..+..++.|+.|+++.|++......+..+.++-.|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34555566666665433333334456666666666666 55666666666666666666665444333345555555555
Q ss_pred CCcccccchhhhhcCCCCcEEeCCCCcccccCC
Q 042089 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFGRIP 408 (557)
Q Consensus 376 ~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p 408 (557)
+|... ++|..+.-.+.....+++++.+.+.-+
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 55554 344333333333344445555544443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.6e-05 Score=53.16 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=23.5
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 416 ~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5667777777776 45556677777777777777766
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=5.2e-07 Score=87.98 Aligned_cols=135 Identities=17% Similarity=0.128 Sum_probs=65.8
Q ss_pred CCCccEEECcCCcC-cCCCchhHhhhccCCcEEeCCCCc-CcccCCccc-cCCCCCcEEEcCCCeee-eecCcccccCCC
Q 042089 173 HDFLRHLDISNNNL-IGTLPQNMGTVLQKLMLIDISKNN-FEGNIPYSI-GEMKELFLLDLSRNKFS-GDLSATSVNGCA 248 (557)
Q Consensus 173 ~~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~ 248 (557)
+..|+.|+.+++.. +...-..++..+.+|+++-++.++ ++..-...+ .+++.|+.+++..+... ..--.....+|+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44455555554432 222223344445566666665554 221111111 24556666666555421 111112234567
Q ss_pred CCcEEeccCCcccccc-----CccccCcccccceeccccccc-ccccccccCCCCCcEEEccCCc
Q 042089 249 SLEYLDVSENNFYGHI-----FPTYMNLTQLRGLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNL 307 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~~~~L~~L~Ls~n~ 307 (557)
.|+.+.++++.....- ...-..+..++.+.++++..+ ...-..+..+++|+.+++-.++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777777766442111 111224556777777777543 2333455667788887776654
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.4e-05 Score=84.93 Aligned_cols=146 Identities=22% Similarity=0.266 Sum_probs=77.6
Q ss_pred CcCEEeCCCCCCc-ccCCccC-CCCCCCCEEECCCCcCCccC-chhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 5 NLTELDLRENNLE-GQLPWRL-SDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 5 ~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
+|++||+++...- ..=|..+ ..+|.|+.|.+++-.+...- -....++++|+.||+|++.++. + ..++++++|++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhccccHHH
Confidence 5677777775422 1112222 35677777777776554332 2333467777777777777662 2 34667777777
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-------hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCC
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-------FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLE 153 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 153 (557)
|.+.+-.+........++.+++|++||+|......-+. .-..+++|+.||.|+..+.+.+-+.+...-++|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 77666555432222234556666666666655422221 1112456666666665555444444433333333
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=0.0001 Score=65.37 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=44.3
Q ss_pred CCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEE
Q 042089 29 GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108 (557)
Q Consensus 29 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 108 (557)
....+||+.|.+... +.|..++.|..|.|.+|+|+ .|.+..-..+++|+.|.+.+|++........+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455666666665422 34556666666777766666 333343444555666666665554322222334455555555
Q ss_pred CCCCCC
Q 042089 109 LPNCSL 114 (557)
Q Consensus 109 L~~n~l 114 (557)
+-+|..
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 555544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00049 Score=69.15 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=14.2
Q ss_pred cccEEECCCC-CCCCcChhhhCCCCCcEEEccCCc
Q 042089 103 QLKVLQLPNC-SLKVIPSFLLHQYNLKFLDLSSNK 136 (557)
Q Consensus 103 ~L~~L~L~~n-~l~~ip~~l~~~~~L~~L~Ls~n~ 136 (557)
.|++|.+++| .+..+|. +|+.|+++.+.
T Consensus 95 nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 95 GLEKLTVCHCPEISGLPE------SVRSLEIKGSA 123 (426)
T ss_pred hhhheEccCccccccccc------ccceEEeCCCC
Confidence 4556666555 3344443 35555555443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=0.00045 Score=58.67 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=51.7
Q ss_pred ccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCC
Q 042089 22 WRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT 101 (557)
Q Consensus 22 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 101 (557)
..|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +. .++...+.++++++.+.+.+. ...++...+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccccc--cccccccccccc
Confidence 3566777777777764 455444556777777777777664 44 555556666666777776431 112333344455
Q ss_pred CcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC
Q 042089 102 FQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL 152 (557)
Q Consensus 102 ~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 152 (557)
.+|+.+.+..+ +..++.. +.++ +++.+.+.. .+. .++...|.+|++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 66666666543 4333332 3333 566666554 233 4455555555554
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.32 E-value=0.00073 Score=67.95 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=81.8
Q ss_pred ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCC-cCCCCcchhhccCCCC
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGNIPVQINNFRQL 346 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L 346 (557)
+..+.+++.|++++|.++ .+|. + ..+|+.|+++++.--..+|..+. ++|+.|++++| .+. .+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 344678899999999877 4452 2 34799999987544345565443 57888999888 443 4553 46
Q ss_pred cEEEccCcccccccccccCCCCccEEEccCCccc--ccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 347 EILYLSENRLFGSIASFLNLSSIMHLYLQKNALS--GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 347 ~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
+.|+++.+.... ++. -.++|+.|.+.+++.. ..+|..+ .++|++|++++|... ..|..+. .+|+.|.++.
T Consensus 115 e~L~L~~n~~~~-L~~--LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 115 RSLEIKGSATDS-IKN--VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred ceEEeCCCCCcc-ccc--CcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 777776654321 111 1235667766543311 1112111 257888888887754 3343333 4678888876
Q ss_pred Cc
Q 042089 425 NY 426 (557)
Q Consensus 425 N~ 426 (557)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 63
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.28 E-value=0.00096 Score=56.63 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=43.4
Q ss_pred cccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCC
Q 042089 218 SIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG 297 (557)
Q Consensus 218 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~ 297 (557)
+|.++++|+.+.+.. .+. .++...+..+++++.+.+..+ +...-...+..+++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 344555555555543 232 444455555555555555543 3322223344444555555543 222122334444556
Q ss_pred CcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCC
Q 042089 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 346 (557)
Q Consensus 298 L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 346 (557)
++.+++..+ +...-...+.++ .++.+.+.. .+......+|.+|++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666443 333333445554 555555554 3333334445555444
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00067 Score=60.38 Aligned_cols=85 Identities=26% Similarity=0.332 Sum_probs=66.7
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
.+...+||++|.+... ..|..+++|..|.|++|+++.+-|.--.-+++|..|.|.+|++..-....-+..|++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3567889999987632 46788999999999999999766655556788999999999986322222377899999999
Q ss_pred ecCccCc
Q 042089 84 LLKVSNN 90 (557)
Q Consensus 84 l~~~~~~ 90 (557)
+-+|...
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 9988764
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.96 E-value=0.00027 Score=39.30 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=18.9
Q ss_pred ccceEEccCCcCcccCChhhhCC
Q 042089 533 YMSGMDLSYNELTGEIPSEIGEL 555 (557)
Q Consensus 533 ~l~~ldls~N~l~G~iP~~~~~l 555 (557)
+|+.||||+|+|+ +||+++++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3678999999999 999998875
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00091 Score=62.04 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCCccEEEccCC--cccccchhhhhcCCCCcEEeCCCCcccccCCcc---ccCCCCccEEEcCCCcccc
Q 042089 366 LSSIMHLYLQKN--ALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ---INKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 366 ~~~L~~L~L~~n--~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~L~~N~l~g 429 (557)
+++|+.|.++.| +.++.++....++++|+++++++|++.. +.. +..+.+|..|++..|..++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence 444444444444 3333333334444555555555555432 222 2334445555555554443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.0013 Score=61.02 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=55.4
Q ss_pred CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCc--ccCcccChhhhcCCCCCcEEEecCccCcccccCCC
Q 042089 20 LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN--NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN 97 (557)
Q Consensus 20 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 97 (557)
+......+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.+.++. ...++++|++|++++|.+...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~l----- 106 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDL----- 106 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccc-----
Confidence 444555556666666666655522 23445666777777777 34433332 123335555555544443210
Q ss_pred CCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcC--CCcHHHhhcCCCCCEEE
Q 042089 98 WIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVG--NFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 98 ~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~ 156 (557)
..++ -+..+.+|..||+.+|..+. .--..+|.-+++|++|+
T Consensus 107 -----------------stl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 107 -----------------STLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred -----------------cccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 1111 23445566677776665442 11123444566676664
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=6.8e-05 Score=69.67 Aligned_cols=87 Identities=23% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
+.+.+.|+..+|.++.. ....+++.|++|.||-|.++..- .+..|++|++|+|..|.|...--...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678899999988743 23567899999999999998553 478899999999999988744333457788888888
Q ss_pred EecCccCcccc
Q 042089 83 RLLKVSNNLRF 93 (557)
Q Consensus 83 ~l~~~~~~~~~ 93 (557)
.+..|.-.+..
T Consensus 94 WL~ENPCc~~a 104 (388)
T KOG2123|consen 94 WLDENPCCGEA 104 (388)
T ss_pred hhccCCccccc
Confidence 88887665443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.49 E-value=0.00024 Score=75.31 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=9.3
Q ss_pred hccCCCCcEEEccCcc
Q 042089 340 INNFRQLEILYLSENR 355 (557)
Q Consensus 340 l~~l~~L~~L~L~~n~ 355 (557)
...|+.++.+.+.++.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3455666666666555
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00065 Score=71.95 Aligned_cols=175 Identities=20% Similarity=0.066 Sum_probs=94.9
Q ss_pred CCCCCcEEEccCCc-CcCCCcHHHhhcCCCCCEEEccCc-cccCccc----CCcccCCCccEEECcCCc-CcCCCchhHh
Q 042089 123 HQYNLKFLDLSSNK-LVGNFPTWLMQNNTNLEVLRLSNN-SFSGILQ----LPKVKHDFLRHLDISNNN-LIGTLPQNMG 195 (557)
Q Consensus 123 ~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~~~~L~~L~L~~n~-l~~~~~~~~~ 195 (557)
.++.|+.+.+..+. ++..--..+...++.|+.|+++.+ ....... .....+.+|+.|+++++. +++..-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46777888777663 332112233447788888888763 1111100 111245778888888877 5555555666
Q ss_pred hhccCCcEEeCCCCc-CcccCC-ccccCCCCCcEEEcCCCeee-eecCcccccCCCCCcEEeccCCccccccCccccCcc
Q 042089 196 TVLQKLMLIDISKNN-FEGNIP-YSIGEMKELFLLDLSRNKFS-GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT 272 (557)
Q Consensus 196 ~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (557)
..|++|+.|.+..+. ++..-- .....++.|++|+++.+... ...-......|++++.+.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 667888888877666 443222 22345777888888877643 221112244577776655433211 33
Q ss_pred cccceeccccccc---ccccccccCCCCCcEEEccCCc
Q 042089 273 QLRGLYLKNNHFT---GKIKAGLLNSHGLVVLDISNNL 307 (557)
Q Consensus 273 ~L~~L~L~~n~~~---~~~~~~l~~~~~L~~L~Ls~n~ 307 (557)
.++.+.+....-. .........++.++.+.+..+.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 4444444433221 1122234456677777776665
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.23 E-value=0.0016 Score=36.12 Aligned_cols=20 Identities=65% Similarity=0.904 Sum_probs=11.6
Q ss_pred CCEEEccCCcCcCCcCccccc
Q 042089 441 LRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 441 L~~Ldls~N~l~g~ip~~~~~ 461 (557)
|++||+++|+++ .||+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 56655443
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00038 Score=64.83 Aligned_cols=86 Identities=29% Similarity=0.286 Sum_probs=48.3
Q ss_pred cccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCc-ccCCCccEEEC
Q 042089 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK-VKHDFLRHLDI 181 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L 181 (557)
+.+.|++.+|.+..|. ...+++.|++|.|+-|+++.--| +..|++|++|+|..|.+.....+.. .++++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4566666666665553 34456667777777776663322 2466666666666666655422221 25556666666
Q ss_pred cCCcCcCCCch
Q 042089 182 SNNNLIGTLPQ 192 (557)
Q Consensus 182 ~~n~l~~~~~~ 192 (557)
..|.-.|..+.
T Consensus 96 ~ENPCc~~ag~ 106 (388)
T KOG2123|consen 96 DENPCCGEAGQ 106 (388)
T ss_pred ccCCcccccch
Confidence 66555544443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.34 E-value=0.00081 Score=70.05 Aligned_cols=84 Identities=23% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCcEEeccCCccccccC----ccccCcccccceeccccccccccc----ccccCC-CCCcEEEccCCcccCc----cCcc
Q 042089 249 SLEYLDVSENNFYGHIF----PTYMNLTQLRGLYLKNNHFTGKIK----AGLLNS-HGLVVLDISNNLLSGH----IPCW 315 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~~-~~L~~L~Ls~n~l~~~----~p~~ 315 (557)
.+..+.|.+|.+..... ..+...+.|+.|+++.|.+.+..- ..+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36777788877754322 233456677777777777763211 112221 4455666666665532 3334
Q ss_pred ccCCCCCcEEEcCCCcC
Q 042089 316 IGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 316 l~~~~~L~~L~l~~n~l 332 (557)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44455566666666655
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.14 E-value=0.00078 Score=70.17 Aligned_cols=87 Identities=25% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCCcEEEcCCCeeeeecCcc---cccCCCCCcEEeccCCccccccCc----cccCc-ccccceeccccccccc----ccc
Q 042089 223 KELFLLDLSRNKFSGDLSAT---SVNGCASLEYLDVSENNFYGHIFP----TYMNL-TQLRGLYLKNNHFTGK----IKA 290 (557)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l-~~L~~L~L~~n~~~~~----~~~ 290 (557)
..+..+.+.+|.+....... .......|+.|++++|.+.+.-.. .+... ..+++|.+..|.+++. +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 44778888888876443222 234567888899999988743221 22222 5677788888877753 455
Q ss_pred cccCCCCCcEEEccCCccc
Q 042089 291 GLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 291 ~l~~~~~L~~L~Ls~n~l~ 309 (557)
.+.....++.++++.|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHhcccchhHHHHHhcccc
Confidence 6666788889999988774
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.75 E-value=0.11 Score=26.65 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=4.7
Q ss_pred CCCEEeCcCcccC
Q 042089 53 SLEYLVLSDNNFQ 65 (557)
Q Consensus 53 ~L~~L~Ls~n~l~ 65 (557)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.41 E-value=0.2 Score=28.90 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=13.6
Q ss_pred CCCCCEEeCcCcccCcccChhhh
Q 042089 51 LTSLEYLVLSDNNFQGEFPLSLL 73 (557)
Q Consensus 51 l~~L~~L~Ls~n~l~g~~p~~~~ 73 (557)
+++|++|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777766 5565443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.41 E-value=0.2 Score=28.90 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=13.6
Q ss_pred CCCCCEEeCcCcccCcccChhhh
Q 042089 51 LTSLEYLVLSDNNFQGEFPLSLL 73 (557)
Q Consensus 51 l~~L~~L~Ls~n~l~g~~p~~~~ 73 (557)
+++|++|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777766 5565443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.48 E-value=0.48 Score=27.24 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=13.1
Q ss_pred CCCcEEEccCCcCcCCCcHHHh
Q 042089 125 YNLKFLDLSSNKLVGNFPTWLM 146 (557)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~ 146 (557)
++|++|+|++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.48 E-value=0.48 Score=27.24 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=13.1
Q ss_pred CCCcEEEccCCcCcCCCcHHHh
Q 042089 125 YNLKFLDLSSNKLVGNFPTWLM 146 (557)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~ 146 (557)
++|++|+|++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.82 E-value=0.12 Score=29.16 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.2
Q ss_pred CccceEEccCCcCcccCChhhh
Q 042089 532 NYMSGMDLSYNELTGEIPSEIG 553 (557)
Q Consensus 532 ~~l~~ldls~N~l~G~iP~~~~ 553 (557)
+.|+.|||++|+++++.+..|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5788999999999998887775
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.32 E-value=0.5 Score=26.56 Aligned_cols=13 Identities=46% Similarity=0.600 Sum_probs=4.6
Q ss_pred CCcEEeCCCCccc
Q 042089 392 ELLTLDLRDNKFF 404 (557)
Q Consensus 392 ~L~~L~L~~N~l~ 404 (557)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.48 E-value=0.041 Score=50.34 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEc
Q 042089 367 SSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446 (557)
Q Consensus 367 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldl 446 (557)
...+.||++.|++- ..-..+..++.+..||++.|++ .-.|..++....++.+++..|..+ ..|.++...+.++.+|+
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34444555555443 2223344455566666666665 345555665566666666666665 66667777777777777
Q ss_pred cCCcCcCC
Q 042089 447 SHNKLNGS 454 (557)
Q Consensus 447 s~N~l~g~ 454 (557)
-.|+|...
T Consensus 119 k~~~~~~~ 126 (326)
T KOG0473|consen 119 KKTEFFRK 126 (326)
T ss_pred ccCcchHH
Confidence 77776533
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=0.19 Score=45.14 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeee-cCcccccCCCCCcEEeccCC-ccccccCccccCcccccce
Q 042089 200 KLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD-LSATSVNGCASLEYLDVSEN-NFYGHIFPTYMNLTQLRGL 277 (557)
Q Consensus 200 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 277 (557)
.++.+|.++..+...--..+.+++.++.|.+.++.--+. --..+..-.++|+.|++++| +|+..-...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666665544445556666666666666652211 11111122355666666654 3333333344445555555
Q ss_pred eccc
Q 042089 278 YLKN 281 (557)
Q Consensus 278 ~L~~ 281 (557)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.83 E-value=0.091 Score=48.16 Aligned_cols=88 Identities=22% Similarity=0.278 Sum_probs=62.5
Q ss_pred hccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccE
Q 042089 340 INNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419 (557)
Q Consensus 340 l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 419 (557)
+......+.||++.|++...-..+..++.++.++++.|++. ..|..+.....+..+++..|..+ ..|..++..+.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 44556677777777776544444445667777788877776 67777777777777888777763 67778888888888
Q ss_pred EEcCCCcccc
Q 042089 420 LLLRGNYLQG 429 (557)
Q Consensus 420 L~L~~N~l~g 429 (557)
+++.+|.|..
T Consensus 116 ~e~k~~~~~~ 125 (326)
T KOG0473|consen 116 NEQKKTEFFR 125 (326)
T ss_pred hhhccCcchH
Confidence 8888887653
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.43 E-value=0.65 Score=41.89 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=19.6
Q ss_pred CCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcc
Q 042089 321 YLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 321 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 355 (557)
.++.++-++..+..+.-+.+..++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 34555555555555555555555666666655554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.49 E-value=5 Score=41.90 Aligned_cols=66 Identities=32% Similarity=0.260 Sum_probs=37.2
Q ss_pred CCCCcEEEccCCcCcC-CCcHHHhhcCCCCCEEEccCc--cccCcccCCcccCCCccEEECcCCcCcCC
Q 042089 124 QYNLKFLDLSSNKLVG-NFPTWLMQNNTNLEVLRLSNN--SFSGILQLPKVKHDFLRHLDISNNNLIGT 189 (557)
Q Consensus 124 ~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 189 (557)
-+.+..++|++|++.. .--..+.+..|+|+.|+|++| .+.........+...|++|.+.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3456667777776542 111223345577777777777 33333223333555677777777776543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.16 E-value=5.9 Score=22.88 Aligned_cols=15 Identities=53% Similarity=0.614 Sum_probs=11.2
Q ss_pred CCCCCEEeCcCcccC
Q 042089 51 LTSLEYLVLSDNNFQ 65 (557)
Q Consensus 51 l~~L~~L~Ls~n~l~ 65 (557)
+++|++|+|++|.|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888888888775
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.57 E-value=5.9 Score=23.21 Aligned_cols=14 Identities=64% Similarity=0.795 Sum_probs=11.6
Q ss_pred CCCCEEEccCCcCc
Q 042089 439 QKLRILDLSHNKLN 452 (557)
Q Consensus 439 ~~L~~Ldls~N~l~ 452 (557)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57888999999885
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.44 E-value=31 Score=35.59 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=8.6
Q ss_pred CccEEECcCCcCcCCCch
Q 042089 175 FLRHLDISNNNLIGTLPQ 192 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~ 192 (557)
.+++++++.|.+....|.
T Consensus 166 r~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPI 183 (553)
T ss_pred hhhhhccCCCcccccCCc
Confidence 345555555554444433
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.19 E-value=8.8 Score=22.16 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=9.1
Q ss_pred cccEEECCCCCCCCcCh
Q 042089 103 QLKVLQLPNCSLKVIPS 119 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~ 119 (557)
+|++|++++|++..+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 35555555555555554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.90 E-value=14 Score=38.66 Aligned_cols=63 Identities=30% Similarity=0.275 Sum_probs=43.2
Q ss_pred CCcccEEECCCCCC---CCcChhhhCCCCCcEEEccCC--cCcCCCcHHHh-hcCCCCCEEEccCccccCc
Q 042089 101 TFQLKVLQLPNCSL---KVIPSFLLHQYNLKFLDLSSN--KLVGNFPTWLM-QNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 101 ~~~L~~L~L~~n~l---~~ip~~l~~~~~L~~L~Ls~n--~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~ 165 (557)
.+.+..+.|++|++ ..+...-..-++|..|+|++| .+... .++. -+...|++|-+.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 34678888999988 444444556688999999999 44321 1221 1456788999999988755
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.12 E-value=22 Score=20.17 Aligned_cols=13 Identities=31% Similarity=0.189 Sum_probs=9.1
Q ss_pred CCCCCEEeCcCcc
Q 042089 51 LTSLEYLVLSDNN 63 (557)
Q Consensus 51 l~~L~~L~Ls~n~ 63 (557)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677777777774
Done!