Query 042089
Match_columns 557
No_of_seqs 438 out of 4267
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 04:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-65 7.5E-70 569.9 41.7 455 2-463 98-562 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.8E-64 2.3E-68 557.9 40.1 423 2-434 124-557 (768)
3 3t6q_A CD180 antigen; protein- 100.0 9.1E-53 3.1E-57 457.4 43.2 453 4-463 33-524 (606)
4 3t6q_A CD180 antigen; protein- 100.0 2.7E-52 9.2E-57 453.7 37.9 451 2-460 55-544 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-51 1.2E-55 450.8 44.5 447 4-454 25-519 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.5E-52 3.2E-56 449.4 34.6 446 4-463 32-521 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-50 1.8E-54 441.5 43.7 457 2-463 47-560 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-50 3.9E-55 440.8 31.2 444 2-461 54-542 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 3E-49 1E-53 426.5 35.1 440 4-457 28-536 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-49 9.7E-54 444.6 36.2 442 3-456 23-521 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 8.3E-48 2.9E-52 415.2 35.9 442 6-463 9-494 (570)
12 4eco_A Uncharacterized protein 100.0 2.3E-49 8E-54 431.2 22.6 340 111-459 192-585 (636)
13 4eco_A Uncharacterized protein 100.0 5.3E-50 1.8E-54 436.3 17.4 431 4-452 81-600 (636)
14 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-47 4.2E-52 431.3 29.8 448 2-463 46-550 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.8E-48 3.3E-52 412.8 25.6 441 4-456 26-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-47 1.5E-51 404.9 29.2 431 7-456 3-485 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 9.5E-47 3.2E-51 405.1 29.3 439 3-457 4-468 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 6.2E-47 2.1E-51 419.4 25.9 415 4-454 323-842 (876)
19 4ecn_A Leucine-rich repeat pro 100.0 9.4E-46 3.2E-50 409.9 27.3 421 28-460 323-826 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-45 1.7E-49 389.0 20.5 415 4-432 21-485 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-44 2.3E-48 383.7 27.3 436 3-457 30-515 (562)
22 1jl5_A Outer protein YOPM; leu 100.0 5.7E-43 2E-47 364.9 22.8 373 26-463 9-383 (454)
23 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-41 9E-46 368.9 36.8 442 5-454 53-582 (635)
24 1jl5_A Outer protein YOPM; leu 100.0 5.3E-42 1.8E-46 357.6 23.8 397 2-464 9-423 (454)
25 3bz5_A Internalin-J, INLJ; leu 100.0 6.1E-42 2.1E-46 357.5 22.4 366 17-461 31-396 (457)
26 3v47_A TOLL-like receptor 5B a 100.0 7.8E-41 2.7E-45 350.6 29.9 382 8-457 14-413 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.5E-42 3.2E-46 367.0 19.6 415 4-432 52-514 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-39 4.6E-44 355.4 35.3 443 8-462 35-565 (635)
29 3v47_A TOLL-like receptor 5B a 100.0 1.2E-38 4E-43 334.0 30.9 365 4-384 30-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-38 2.3E-42 327.0 27.6 357 2-437 40-396 (457)
31 1o6v_A Internalin A; bacterial 100.0 3.9E-37 1.3E-41 323.2 32.0 345 27-405 45-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 5.8E-37 2E-41 321.9 33.3 346 50-453 44-389 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 4.6E-35 1.6E-39 308.6 25.7 321 105-430 14-335 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 5.3E-35 1.8E-39 308.1 25.3 321 128-454 14-335 (477)
35 4fmz_A Internalin; leucine ric 100.0 1.1E-32 3.9E-37 277.9 30.8 305 100-452 42-346 (347)
36 4fmz_A Internalin; leucine ric 100.0 5.5E-33 1.9E-37 280.2 28.4 286 149-456 43-328 (347)
37 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-34 7.5E-39 285.9 15.8 250 175-453 51-306 (313)
38 3o6n_A APL1; leucine-rich repe 100.0 8.6E-33 2.9E-37 283.4 26.3 309 101-454 44-354 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 2E-32 7E-37 280.7 25.7 312 75-431 43-355 (390)
40 1z7x_W Ribonuclease inhibitor; 100.0 6E-36 2E-40 314.0 -1.6 383 52-454 3-442 (461)
41 3oja_B Anopheles plasmodium-re 100.0 2.7E-32 9.2E-37 295.1 26.3 310 100-429 49-359 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-35 4.2E-40 311.6 -0.6 401 3-444 2-460 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-33 1.3E-37 277.0 16.9 253 150-429 50-306 (313)
44 3oja_B Anopheles plasmodium-re 100.0 6.7E-32 2.3E-36 291.9 26.6 312 123-455 49-361 (597)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-31 1.3E-35 265.2 23.7 266 175-450 55-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 3.5E-30 1.2E-34 257.8 26.3 267 175-450 53-330 (330)
47 3ogk_B Coronatine-insensitive 100.0 2.1E-33 7.2E-38 304.0 2.0 88 366-453 435-527 (592)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-30 7.3E-35 259.6 22.9 289 103-426 34-331 (332)
49 3ogk_B Coronatine-insensitive 100.0 1.6E-32 5.6E-37 297.1 6.5 393 26-446 110-545 (592)
50 1xku_A Decorin; proteoglycan, 100.0 1.1E-29 3.8E-34 254.2 25.8 290 103-426 32-330 (330)
51 2z66_A Variable lymphocyte rec 100.0 2.1E-28 7.2E-33 242.2 21.2 251 177-455 10-264 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 3.3E-29 1.1E-33 253.2 15.3 274 177-456 34-318 (353)
53 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.5E-33 245.7 18.7 234 199-452 81-314 (328)
54 2z66_A Variable lymphocyte rec 100.0 1.8E-28 6.2E-33 242.7 17.4 283 152-463 9-298 (306)
55 2z80_A TOLL-like receptor 2, v 100.0 4.7E-28 1.6E-32 244.7 19.2 255 175-432 53-318 (353)
56 4fcg_A Uncharacterized protein 100.0 6.1E-28 2.1E-32 240.9 19.4 235 172-428 79-314 (328)
57 1wwl_A Monocyte differentiatio 100.0 3.2E-29 1.1E-33 248.6 7.9 247 198-454 42-311 (312)
58 2p1m_B Transport inhibitor res 100.0 1.1E-30 3.7E-35 282.9 -3.8 234 215-450 281-542 (594)
59 3o53_A Protein LRIM1, AGAP0063 100.0 5E-29 1.7E-33 247.8 8.4 267 176-457 12-281 (317)
60 3zyi_A Leucine-rich repeat-con 100.0 8.2E-27 2.8E-31 243.6 25.0 249 176-454 56-305 (452)
61 2p1m_B Transport inhibitor res 100.0 2.7E-30 9.3E-35 279.7 -1.5 421 2-428 64-544 (594)
62 3zyj_A Leucine-rich repeat-con 100.0 7E-27 2.4E-31 243.3 24.3 248 176-453 45-293 (440)
63 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-27 1.1E-31 231.1 17.3 255 178-462 15-271 (285)
64 1wwl_A Monocyte differentiatio 99.9 1.4E-28 4.8E-33 244.0 7.0 248 172-430 41-311 (312)
65 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-26 6.5E-31 225.7 21.1 227 226-456 14-242 (285)
66 3oja_A Leucine-rich immune mol 99.9 3.8E-27 1.3E-31 247.8 13.9 235 199-447 34-270 (487)
67 3zyj_A Leucine-rich repeat-con 99.9 9.6E-26 3.3E-30 234.7 24.2 247 151-404 44-292 (440)
68 3zyi_A Leucine-rich repeat-con 99.9 9.2E-26 3.2E-30 235.7 24.1 247 151-404 55-303 (452)
69 3o53_A Protein LRIM1, AGAP0063 99.9 7.8E-28 2.7E-32 239.2 6.2 246 174-434 34-282 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-25 9.6E-30 238.5 24.4 267 6-344 42-308 (622)
71 3g06_A SSPH2 (leucine-rich rep 99.9 5.6E-25 1.9E-29 236.2 26.1 263 29-363 41-303 (622)
72 3oja_A Leucine-rich immune mol 99.9 7.9E-26 2.7E-30 237.8 13.6 229 220-463 31-262 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 2.4E-24 8.4E-29 209.6 20.1 207 249-456 29-241 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 5.5E-24 1.9E-28 207.1 20.3 224 180-429 13-238 (276)
75 3rfs_A Internalin B, repeat mo 99.9 2.3E-24 8E-29 209.2 15.7 187 268-463 59-246 (272)
76 3rfs_A Internalin B, repeat mo 99.9 2.2E-24 7.7E-29 209.3 12.3 226 201-440 21-247 (272)
77 2ca6_A RAN GTPase-activating p 99.9 1.6E-25 5.6E-30 228.9 3.7 188 269-456 91-320 (386)
78 2o6q_A Variable lymphocyte rec 99.9 1E-22 3.5E-27 197.4 22.2 204 250-456 18-222 (270)
79 2ast_B S-phase kinase-associat 99.9 1.3E-24 4.6E-29 217.7 7.4 253 176-461 49-315 (336)
80 3goz_A Leucine-rich repeat-con 99.9 7.1E-25 2.4E-29 222.0 5.2 257 179-461 3-306 (362)
81 1p9a_G Platelet glycoprotein I 99.9 2.4E-22 8.2E-27 196.6 20.9 178 273-454 32-210 (290)
82 4glp_A Monocyte differentiatio 99.9 1.2E-23 4E-28 208.4 11.1 225 224-453 65-308 (310)
83 2o6q_A Variable lymphocyte rec 99.9 3.9E-22 1.3E-26 193.3 21.0 202 225-430 18-220 (270)
84 2ast_B S-phase kinase-associat 99.9 9.2E-24 3.1E-28 211.6 9.7 221 224-449 48-282 (336)
85 2ca6_A RAN GTPase-activating p 99.9 1.4E-24 4.9E-29 221.9 2.8 251 198-448 31-339 (386)
86 3goz_A Leucine-rich repeat-con 99.9 2.4E-24 8.2E-29 218.2 3.3 205 154-358 2-239 (362)
87 1p9a_G Platelet glycoprotein I 99.9 5.9E-22 2E-26 193.9 19.5 201 220-428 7-208 (290)
88 3m19_A Variable lymphocyte rec 99.9 1.8E-21 6.1E-26 186.5 19.2 181 273-456 15-196 (251)
89 1h6u_A Internalin H; cell adhe 99.9 2.3E-21 8E-26 191.5 16.4 169 247-428 62-230 (308)
90 4glp_A Monocyte differentiatio 99.9 9.7E-22 3.3E-26 194.6 13.0 225 126-356 65-306 (310)
91 2xwt_C Thyrotropin receptor; s 99.9 3.4E-21 1.2E-25 183.1 15.8 197 224-449 32-236 (239)
92 2xwt_C Thyrotropin receptor; s 99.9 2.7E-21 9.1E-26 183.8 14.9 191 273-465 32-231 (239)
93 1h6u_A Internalin H; cell adhe 99.9 5.8E-21 2E-25 188.6 17.5 196 246-457 39-234 (308)
94 3m19_A Variable lymphocyte rec 99.8 2.2E-20 7.5E-25 178.9 18.6 178 250-430 16-194 (251)
95 3cvr_A Invasion plasmid antige 99.8 5E-21 1.7E-25 203.0 15.4 184 224-435 60-250 (571)
96 2o6s_A Variable lymphocyte rec 99.8 1.7E-20 5.8E-25 174.2 13.8 178 276-463 11-189 (208)
97 2o6s_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 170.6 14.1 174 272-456 28-202 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5.2E-24 181.9 17.7 241 177-450 12-257 (350)
99 3cvr_A Invasion plasmid antige 99.8 9E-20 3.1E-24 193.4 15.3 188 199-414 59-253 (571)
100 4ay9_X Follicle-stimulating ho 99.8 2.1E-19 7E-24 180.9 16.2 240 153-401 12-256 (350)
101 1m9s_A Internalin B; cell inva 99.8 5E-19 1.7E-23 189.7 15.5 173 269-454 40-212 (605)
102 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.1E-23 170.4 15.1 171 270-453 44-214 (291)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-18 7.5E-23 161.3 15.6 155 299-456 14-170 (220)
104 1m9s_A Internalin B; cell inva 99.8 4.9E-18 1.7E-22 182.0 16.8 191 200-406 22-212 (605)
105 2v9t_B SLIT homolog 2 protein 99.8 6.5E-18 2.2E-22 158.1 14.8 134 321-454 33-167 (220)
106 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 157.6 16.5 155 298-456 21-176 (229)
107 2xot_A Amphoterin-induced prot 99.8 2.9E-18 1E-22 173.2 12.4 157 297-453 40-203 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-17 5.3E-22 155.5 16.4 154 202-358 14-167 (220)
109 1h6t_A Internalin B; cell adhe 99.8 1E-17 3.5E-22 163.8 15.8 187 203-429 28-214 (291)
110 4ezg_A Putative uncharacterize 99.7 8.7E-18 3E-22 154.4 13.2 154 293-453 41-195 (197)
111 3e6j_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 154.7 16.9 153 6-164 21-173 (229)
112 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 5.8E-22 155.2 14.7 152 275-429 14-166 (220)
113 1xeu_A Internalin C; cellular 99.7 9.1E-18 3.1E-22 161.6 11.8 171 270-454 17-187 (263)
114 4ezg_A Putative uncharacterize 99.7 2.3E-17 8E-22 151.6 12.9 130 270-403 64-193 (197)
115 2xot_A Amphoterin-induced prot 99.7 4E-17 1.4E-21 164.9 14.7 178 176-358 20-203 (361)
116 1dce_A Protein (RAB geranylger 99.7 9.4E-19 3.2E-23 186.5 0.7 120 322-446 443-567 (567)
117 1dce_A Protein (RAB geranylger 99.7 7.1E-19 2.4E-23 187.4 -0.9 108 345-456 442-550 (567)
118 1xeu_A Internalin C; cellular 99.7 3.8E-17 1.3E-21 157.2 10.2 169 248-430 19-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 1.6E-16 5.6E-21 145.2 13.3 131 323-456 11-143 (192)
120 3sb4_A Hypothetical leucine ri 99.7 2.3E-17 8E-22 164.4 7.7 283 27-350 24-327 (329)
121 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5.3E-22 182.6 4.9 112 246-361 222-333 (727)
122 2ell_A Acidic leucine-rich nuc 99.7 2.5E-16 8.7E-21 140.6 11.8 136 320-457 24-164 (168)
123 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6E-22 182.1 4.4 183 263-455 215-407 (727)
124 2je0_A Acidic leucine-rich nuc 99.7 2.4E-16 8.4E-21 137.7 9.7 127 321-448 18-149 (149)
125 2ell_A Acidic leucine-rich nuc 99.6 3.8E-16 1.3E-20 139.5 10.0 133 4-164 24-161 (168)
126 3sb4_A Hypothetical leucine ri 99.6 4.7E-16 1.6E-20 154.9 10.8 261 3-279 48-328 (329)
127 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8.1E-20 137.4 13.0 131 299-432 11-143 (192)
128 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4E-20 133.4 9.6 126 296-423 17-148 (149)
129 4fdw_A Leucine rich hypothetic 99.6 4.7E-14 1.6E-18 143.7 20.6 201 121-331 176-381 (401)
130 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 131.3 13.2 131 323-456 10-141 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6.1E-19 131.6 13.1 110 344-454 31-141 (193)
132 4fs7_A Uncharacterized protein 99.6 9.9E-14 3.4E-18 141.7 19.9 330 20-372 63-393 (394)
133 4fs7_A Uncharacterized protein 99.5 3.3E-13 1.1E-17 137.8 20.6 332 40-396 59-393 (394)
134 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 8E-19 128.8 10.5 131 318-452 17-153 (176)
135 4fdw_A Leucine rich hypothetic 99.5 2.5E-13 8.5E-18 138.4 19.2 265 4-285 113-383 (401)
136 2o6r_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 125.8 13.1 113 320-432 28-141 (177)
137 1ds9_A Outer arm dynein; leuci 99.5 9.6E-17 3.3E-21 147.5 -6.1 131 315-452 43-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 2E-16 6.8E-21 145.4 -4.0 151 272-428 18-185 (198)
139 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4E-18 126.1 13.8 127 299-429 13-140 (193)
140 1a9n_A U2A', U2A'; complex (nu 99.5 3.9E-14 1.3E-18 127.4 9.2 134 24-163 15-153 (176)
141 3g39_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 118.3 11.2 110 345-456 10-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 2.7E-12 9.3E-17 114.9 11.5 108 346-455 14-121 (174)
143 3un9_A NLR family member X1; l 99.3 1.1E-13 3.6E-18 139.7 0.7 160 272-431 72-255 (372)
144 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 110.7 12.6 105 7-140 15-120 (174)
145 4gt6_A Cell surface protein; l 99.3 1.1E-10 3.6E-15 119.1 21.2 328 23-379 58-390 (394)
146 4gt6_A Cell surface protein; l 99.3 1.2E-10 4.2E-15 118.6 21.6 323 5-356 65-390 (394)
147 3un9_A NLR family member X1; l 99.3 1E-13 3.4E-18 139.9 -2.1 158 296-453 72-253 (372)
148 3g39_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 109.4 11.8 86 272-357 30-115 (170)
149 2ifg_A High affinity nerve gro 99.1 2.2E-10 7.4E-15 114.7 11.0 102 324-428 12-116 (347)
150 2ifg_A High affinity nerve gro 99.0 7.6E-10 2.6E-14 110.7 10.5 104 299-405 11-117 (347)
151 4h09_A Hypothetical leucine ri 99.0 2.5E-08 8.7E-13 100.8 21.7 302 24-354 42-343 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.9E-08 9.9E-13 100.4 21.8 129 316-449 213-343 (379)
153 2ra8_A Uncharacterized protein 99.0 3.4E-10 1.2E-14 113.2 6.5 139 288-429 164-321 (362)
154 2ra8_A Uncharacterized protein 98.8 2.4E-09 8.1E-14 107.0 4.0 140 312-454 164-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.2E-08 4E-13 92.1 3.5 114 339-452 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 4.6E-08 1.6E-12 88.1 3.9 115 291-428 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 5.1E-08 1.7E-12 92.4 1.9 66 389-456 168-237 (267)
158 3rw6_A Nuclear RNA export fact 98.4 2.2E-07 7.7E-12 88.0 5.6 67 25-92 167-235 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.7E-06 9.3E-11 74.7 2.6 85 366-450 60-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.1E-05 3.7E-10 70.9 2.7 82 297-378 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.6E-09 65.2 3.8 110 342-451 39-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00027 9.2E-09 63.2 4.3 65 293-357 38-111 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.006 2.1E-07 50.7 6.8 36 53-89 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0067 2.3E-07 50.4 6.3 57 395-453 12-69 (130)
165 2lz0_A Uncharacterized protein 52.4 16 0.00054 28.1 4.2 40 21-61 13-52 (100)
166 2lz0_A Uncharacterized protein 49.7 16 0.00053 28.1 3.8 46 39-86 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-65 Score=569.91 Aligned_cols=455 Identities=32% Similarity=0.426 Sum_probs=421.8
Q ss_pred CCCCcCEEeCCCCCCcccCCc--cCCCCCCCCEEECCCCcCCccCchhc-cCCCCCCEEeCcCcccCcccChhh--hcCC
Q 042089 2 KLKNLTELDLRENNLEGQLPW--RLSDLTGLKVFDISSNQLSGNLPSVI-ANLTSLEYLVLSDNNFQGEFPLSL--LTNH 76 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~g~~p~~~--~~~l 76 (557)
++++|++|+|++|.++|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|+|++|.+++..|..+ +.++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 578899999999999998888 89999999999999999998888776 789999999999999987776543 6889
Q ss_pred CCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEE
Q 042089 77 SNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVL 155 (557)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 155 (557)
++|++|++++|.+.+..+. ..+++|++|++++|.+ +.+|. ++.+++|++|++++|++++.+|..+ .++++|++|
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L 252 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLL 252 (768)
T ss_dssp TTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEE
T ss_pred CCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEE
Confidence 9999999999988776554 6788999999999999 55666 9999999999999999999888877 499999999
Q ss_pred EccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCee
Q 042089 156 RLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235 (557)
Q Consensus 156 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 235 (557)
++++|.+.+. .+...+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++++++|++|++++|.+
T Consensus 253 ~Ls~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 253 NISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp ECCSSCCEES--CCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECCCCcccCc--cCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 9999999887 55558899999999999999999999876679999999999999999999999999999999999999
Q ss_pred eeecCcccccCCCCCcEEeccCCccccccCccccCcc-cccceecccccccccccccccC--CCCCcEEEccCCcccCcc
Q 042089 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT-QLRGLYLKNNHFTGKIKAGLLN--SHGLVVLDISNNLLSGHI 312 (557)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~--~~~L~~L~Ls~n~l~~~~ 312 (557)
.|.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 9999988778999999999999999999999999887 9999999999999999988877 789999999999999999
Q ss_pred CccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCC
Q 042089 313 PCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRST 391 (557)
Q Consensus 313 p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~ 391 (557)
|..++++++|++|++++|++++.+|..++.+++|++|++++|.+++.+|..+ .+++|++|++++|++++.+|..+.+++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 9999999999999999999999999999999999999999999999888766 899999999999999999999999999
Q ss_pred CCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 392 ELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 392 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..++.+++|+.||+++|+++|.+|.++.+..
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.8e-64 Score=557.88 Aligned_cols=423 Identities=34% Similarity=0.452 Sum_probs=317.6
Q ss_pred CCCCcCEEeCCCCCCcccCCccC-CCCCCCCEEECCCCcCCccCchh---ccCCCCCCEEeCcCcccCcccChhhhcCCC
Q 042089 2 KLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSV---IANLTSLEYLVLSDNNFQGEFPLSLLTNHS 77 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~ 77 (557)
++++|++|+|++|.+++.+|..+ .++++|++||+++|++++..|.. +.++++|++|++++|.+.+.+| +.+++
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~ 200 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 200 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCT
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCC
Confidence 57899999999999999888776 89999999999999999988877 7899999999999999988776 37889
Q ss_pred CCcEEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEE
Q 042089 78 NLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 156 (557)
+|++|++++|.+.+.++. +..+++|++|++++|.+ +.+|..+..+++|++|++++|++++.+|.. .+++|++|+
T Consensus 201 ~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~ 275 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLS 275 (768)
T ss_dssp TCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEE
T ss_pred cCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEE
Confidence 999999999998876665 67888999999999999 688888999999999999999888877763 678888888
Q ss_pred ccCccccCcccCCccc-CCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCcc-ccCCCCCcEEEcCCCe
Q 042089 157 LSNNSFSGILQLPKVK-HDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYS-IGEMKELFLLDLSRNK 234 (557)
Q Consensus 157 L~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 234 (557)
+++|.+++..+..+.. +++|++|++++|++++.+|..++ .+++|++|++++|.++|.+|.. ++++++|++|++++|.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 8888887664333333 47788888888887777777775 4777888888888777777765 7777777777777777
Q ss_pred eeeecCcccccCCC-CCcEEeccCCccccccCccccC--cccccceecccccccccccccccCCCCCcEEEccCCcccCc
Q 042089 235 FSGDLSATSVNGCA-SLEYLDVSENNFYGHIFPTYMN--LTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH 311 (557)
Q Consensus 235 l~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 311 (557)
+.+.+|..+. .++ +|++|++++|.+++.++..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++.
T Consensus 355 l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 355 FSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred cCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 7777776654 343 6777777777776666666554 56666677777666666666666666666677766666666
Q ss_pred cCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcC
Q 042089 312 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRS 390 (557)
Q Consensus 312 ~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~ 390 (557)
+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+ .+++|++|++++|++++.+|.++..+
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 66666666666666666666666666666666666666666666666666544 56666666666666666666666666
Q ss_pred CCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc
Q 042089 391 TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434 (557)
Q Consensus 391 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 434 (557)
++|++|++++|+++|.+|.+++.+++|++|++++|+++|.+|.+
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 66666666666666666666666666666666666666655543
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.1e-53 Score=457.39 Aligned_cols=453 Identities=22% Similarity=0.178 Sum_probs=383.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
+.+++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|+|++|.+++..| ..++++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEee
Confidence 478999999999998889999999999999999999999999999999999999999999996666 5699999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCc--ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCC--EEEccC
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI--PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLE--VLRLSN 159 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~--~L~L~~ 159 (557)
+++|.+.+..+. .+..+++|++|++++|.+..+ |... .+++|++|++++|++++..|..+ ..+++|+ .|++++
T Consensus 112 L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 112 FIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNG 188 (606)
T ss_dssp CTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTT
T ss_pred ccccCcccCCcc-hhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhh-hhhcccceeEEecCC
Confidence 999998754333 467899999999999999655 5444 49999999999999997666665 5899999 999999
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCc-------------------------CCCchhHhhhcc--CCcEEeCCCCcCc
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLI-------------------------GTLPQNMGTVLQ--KLMLIDISKNNFE 212 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~L~~n~l~ 212 (557)
|.+++..+..+ ....|+.|++++|... ..++...+..+. +|+.+++++|.++
T Consensus 189 n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 189 NDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccCccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 99998743333 4467888888876410 012222222222 6889999999998
Q ss_pred ccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccccccc-
Q 042089 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAG- 291 (557)
Q Consensus 213 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~- 291 (557)
+..+..++.+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 877778999999999999999987 777764 67899999999999998888888889999999999999988776654
Q ss_pred ccCCCCCcEEEccCCcccCcc--CccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc--ccCCC
Q 042089 292 LLNSHGLVVLDISNNLLSGHI--PCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS--FLNLS 367 (557)
Q Consensus 292 l~~~~~L~~L~Ls~n~l~~~~--p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~--~~~~~ 367 (557)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 788899999999999998766 77888999999999999999988888999999999999999999876654 33889
Q ss_pred CccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc---CCccccCCCCccEEEcCCCcccccCCccccCCCCCCEE
Q 042089 368 SIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR---IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRIL 444 (557)
Q Consensus 368 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L 444 (557)
+|++|++++|.+++..|..+..+++|++|++++|++++. .+.++..+++|++|++++|++++..|..+..+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 999999999999988888899999999999999999763 33568889999999999999998889999999999999
Q ss_pred EccCCcCcCCcCccccccc
Q 042089 445 DLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 445 dls~N~l~g~ip~~~~~l~ 463 (557)
|+++|++++.+|..+.+++
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCC
T ss_pred ECCCCccCcCChhHhCccc
Confidence 9999999998888877665
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-52 Score=453.68 Aligned_cols=451 Identities=20% Similarity=0.171 Sum_probs=280.6
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..| ..++++++|++
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~ 133 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLES 133 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc-chhccCCcccE
Confidence 57899999999999999899999999999999999999999999999999999999999999995433 45899999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCc-ChhhhCCCCCc--EEEccCCcCcCCCcHHHhhcCCCCCEEEcc
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI-PSFLLHQYNLK--FLDLSSNKLVGNFPTWLMQNNTNLEVLRLS 158 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~--~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 158 (557)
|++++|.+.+.... .+..+++|++|++++|.+..+ |..+..+++|+ +|++++|.+++..|..+ ...+|+.|+++
T Consensus 134 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~ 210 (606)
T 3t6q_A 134 LYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFG 210 (606)
T ss_dssp EECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECT
T ss_pred EECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccC
Confidence 99999998764333 234589999999999999665 66789999999 99999999997666543 34555555555
Q ss_pred Ccccc---------------------Ccc--cCC---cccC--CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCc
Q 042089 159 NNSFS---------------------GIL--QLP---KVKH--DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNN 210 (557)
Q Consensus 159 ~n~l~---------------------~~~--~~~---~~~~--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 210 (557)
+|... +.. .+. +..+ .+|+.|++++|.+++..+..+ ..+++|+.|++++|.
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATH 289 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh-ccccCCCEEeccCCc
Confidence 44300 000 000 0000 145555555555553322223 235555555555555
Q ss_pred CcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCcc-ccCcccccceecccccccccc-
Q 042089 211 FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPT-YMNLTQLRGLYLKNNHFTGKI- 288 (557)
Q Consensus 211 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~- 288 (557)
++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.++.. +..+++|++|++++|.+++..
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 55 455555555555555555555552222 22344555555555555555444332 455555555555555555443
Q ss_pred -cccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchh-hccCCCCcEEEccCccccccccccc-C
Q 042089 289 -KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLEILYLSENRLFGSIASFL-N 365 (557)
Q Consensus 289 -~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i~~~~-~ 365 (557)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+ .
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 447 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence 444555555555555555555555555555555555555555555444332 4555555555555555555444433 4
Q ss_pred CCCccEEEccCCccccc---chhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCC
Q 042089 366 LSSIMHLYLQKNALSGQ---IPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLR 442 (557)
Q Consensus 366 ~~~L~~L~L~~n~l~~~---~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~ 442 (557)
+++|++|++++|++++. .+..+..+++|++|++++|++++..|.+++.+++|+.|+|++|++++..|..+..++.|
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 55555555555555442 12345555555555555555555555555555555555555555555555555555555
Q ss_pred EEEccCCcCcCCcCcccc
Q 042089 443 ILDLSHNKLNGSIPSCFA 460 (557)
Q Consensus 443 ~Ldls~N~l~g~ip~~~~ 460 (557)
.||+++|++++.+|..+.
T Consensus 527 ~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLP 544 (606)
T ss_dssp EEECCSSCCCCCCGGGHH
T ss_pred EEECcCCcccccCHhhcc
Confidence 555555555555444443
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-51 Score=450.77 Aligned_cols=447 Identities=23% Similarity=0.231 Sum_probs=351.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
+++++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|+|++|.++ .+|...++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 57999999999999877788999999999999999999998999999999999999999998 67766789999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHh-hcCCCCCEEEccCcc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLM-QNNTNLEVLRLSNNS 161 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~ 161 (557)
+++|.+.+ ++...+..+++|++|++++|.+ +..|..+..+++|++|++++|++++..+..+. ..+++|++|++++|.
T Consensus 104 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 99998864 4444678899999999999999 55677788999999999999999976666542 256899999999999
Q ss_pred ccCcccCCcccC---------------------------CCccEEECcCCcCcCCCchhHhhhcc--CCcEEeCCCCcCc
Q 042089 162 FSGILQLPKVKH---------------------------DFLRHLDISNNNLIGTLPQNMGTVLQ--KLMLIDISKNNFE 212 (557)
Q Consensus 162 l~~~~~~~~~~~---------------------------~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~ 212 (557)
+++..+..+..+ ++|+.|++++|.+++..|..+.. ++ +|+.|++++|.++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCC
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcC
Confidence 887643333222 56777888888887766666643 44 4888888888888
Q ss_pred ccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc-----cCc----cccCcccccceeccccc
Q 042089 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH-----IFP----TYMNLTQLRGLYLKNNH 283 (557)
Q Consensus 213 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~----~~~~l~~L~~L~L~~n~ 283 (557)
+..|.+++.+++|++|++++|.+.+..+.. +..+++|++|++++|...+. +|. .+..+++|++|++++|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 777788888888888888888887555443 46778888888877654432 222 56677888888888888
Q ss_pred ccccccccccCCCCCcEEEccCCcccCcc--CccccC--CCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccc
Q 042089 284 FTGKIKAGLLNSHGLVVLDISNNLLSGHI--PCWIGN--FSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359 (557)
Q Consensus 284 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--p~~l~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 359 (557)
+++..+..+..+++|++|++++|.+.... +..+.. .+.|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 88777777888888888888887654321 122222 24778888888888877788888888888888888888776
Q ss_pred ccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccc--ccCCccccCCCCccEEEcCCCcccccCCccc
Q 042089 360 IAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFF--GRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435 (557)
Q Consensus 360 i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 435 (557)
+|. +..+++|++|++++|++.+..+..+..+++|++|++++|.++ +.+|.++..+++|++|++++|++++..|..+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 652 337888888888888888777778888888888888888776 5677888888888888888888887667778
Q ss_pred cCCCCCCEEEccCCcCcCC
Q 042089 436 CQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 436 ~~l~~L~~Ldls~N~l~g~ 454 (557)
..+++|++|++++|++++.
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp TTCTTCCEEECCSSCCGGG
T ss_pred ccccccCEEeCCCCCcccc
Confidence 8888888888888888753
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.5e-52 Score=449.36 Aligned_cols=446 Identities=20% Similarity=0.153 Sum_probs=376.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|+|++|.+++..| ..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEE
Confidence 579999999999998888899999999999999999998889999999999999999999996656 5689999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCC----CCEEEc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTN----LEVLRL 157 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~----L~~L~L 157 (557)
+++|.+.+..+. .+..+.+|++|++++|.+. .+|..++.+++|++|++++|++++..|..+ +.+++ +++|++
T Consensus 111 L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 111 AVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDM 188 (606)
T ss_dssp CTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEEC
T ss_pred ccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeec
Confidence 999998754433 4788999999999999994 689999999999999999999997666544 34544 458999
Q ss_pred cCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeC-------------------------------
Q 042089 158 SNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDI------------------------------- 206 (557)
Q Consensus 158 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L------------------------------- 206 (557)
++|.+++..+..+. ..+|+.|++++|.+++.........++.++.+++
T Consensus 189 ~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred cCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 99999876433333 3489999999998874333333345666666555
Q ss_pred --CCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccc
Q 042089 207 --SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHF 284 (557)
Q Consensus 207 --~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 284 (557)
..+.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred ccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 56677777776 888999999999999986 566 356788999999999999 6777 44 899999999999966
Q ss_pred cccccccccCCCCCcEEEccCCcccCc--cCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc-
Q 042089 285 TGKIKAGLLNSHGLVVLDISNNLLSGH--IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA- 361 (557)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~- 361 (557)
.+.+ .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+..+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh
Confidence 5544 567889999999999998876 48888899999999999999885 66888899999999999999988776
Q ss_pred -cccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccc-cCCccccCCCCccEEEcCCCcccccCCccccCCC
Q 042089 362 -SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG-RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQ 439 (557)
Q Consensus 362 -~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 439 (557)
.+..+++|++|++++|++++..|..+.++++|++|++++|++++ .+|.+++.+++|++|+|++|++++..|..+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 34489999999999999998899999999999999999999988 4788899999999999999999998899999999
Q ss_pred CCCEEEccCCcCcCCcCccccccc
Q 042089 440 KLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 440 ~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+|+.|++++|++++.+|..+++++
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCT
T ss_pred cCCEEECCCCcCCCcCHHHccCCC
Confidence 999999999999998888877665
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-50 Score=441.48 Aligned_cols=457 Identities=24% Similarity=0.246 Sum_probs=376.2
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+++ +|+..++++++|++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLIT 125 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCE
Confidence 46899999999999999999999999999999999999996656689999999999999999984 55466899999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hh--hCCCCCcEEEccCCcCcCCCcHHHhhcC---------
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FL--LHQYNLKFLDLSSNKLVGNFPTWLMQNN--------- 149 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--------- 149 (557)
|++++|.+.+..+. .+..+++|++|++++|.+..++. .+ ..+++|++|++++|++++..|..+. .+
T Consensus 126 L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~ 203 (680)
T 1ziw_A 126 LDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLN 203 (680)
T ss_dssp EECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECT
T ss_pred EECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh-hhhhhhhhhcc
Confidence 99999998765443 46788999999999999966654 33 3568999999999999876665442 33
Q ss_pred ------------------CCCCEEEccCccccCcccCCcccCC--CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCC
Q 042089 150 ------------------TNLEVLRLSNNSFSGILQLPKVKHD--FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209 (557)
Q Consensus 150 ------------------~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 209 (557)
++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n 282 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYN 282 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCC
Confidence 5678888888888876544555544 599999999999977666665 5899999999999
Q ss_pred cCcccCCccccCCCCCcEEEcCCCeeeee--------cCcccccCCCCCcEEeccCCccccccCccccCcccccceeccc
Q 042089 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGD--------LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 210 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
.+++..|.++..+++|++|++++|...+. +....+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 99999999999999999999998765432 2223456789999999999999998888899999999999999
Q ss_pred ccccccc--cccccC--CCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccc
Q 042089 282 NHFTGKI--KAGLLN--SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRL 356 (557)
Q Consensus 282 n~~~~~~--~~~l~~--~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 356 (557)
|.+.+.. +..+.. .++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+| ..+..+++|++|++++|++
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 8765332 122222 3589999999999999889999999999999999999987666 6788899999999999998
Q ss_pred cccccccc-CCCCccEEEccCCccc--ccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCC-
Q 042089 357 FGSIASFL-NLSSIMHLYLQKNALS--GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP- 432 (557)
Q Consensus 357 ~~~i~~~~-~~~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip- 432 (557)
.+..+..+ .+++|++|++++|.+. +.+|..+.++++|++|++++|++++..|.+++.+++|++|+|++|++++..+
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 522 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchh
Confidence 87666555 7889999999999886 5678888899999999999999987777788889999999999999886422
Q ss_pred -------ccccCCCCCCEEEccCCcCcCCcCc-cccccc
Q 042089 433 -------IALCQLQKLRILDLSHNKLNGSIPS-CFANVL 463 (557)
Q Consensus 433 -------~~l~~l~~L~~Ldls~N~l~g~ip~-~~~~l~ 463 (557)
..+..+++|++|++++|+++ .||. .|+++.
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~ 560 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLF 560 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccccc
Confidence 23688889999999999998 5664 455554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-50 Score=440.83 Aligned_cols=444 Identities=17% Similarity=0.122 Sum_probs=342.7
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+ ..++++++|++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 132 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKK 132 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc-cccCCCCCCCE
Confidence 57899999999999998889999999999999999999998889999999999999999999985444 45899999999
Q ss_pred EEecCccCcc-cccCCCCCCCCcccEEECCCCCCCCc-ChhhhCCCCC----cEEEccCCcCcCCCcHHHhhcCCCCCEE
Q 042089 82 LRLLKVSNNL-RFKTENWIPTFQLKVLQLPNCSLKVI-PSFLLHQYNL----KFLDLSSNKLVGNFPTWLMQNNTNLEVL 155 (557)
Q Consensus 82 L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~i-p~~l~~~~~L----~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 155 (557)
|++++|.+.+ .+|. .+..+++|++|++++|.+..+ |..+..+++| ++|++++|.++ .++...+ ...+|++|
T Consensus 133 L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L 209 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHEL 209 (606)
T ss_dssp EECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEE
T ss_pred EeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeee
Confidence 9999998875 3343 577899999999999999554 4555555544 48999999888 4455554 34488888
Q ss_pred EccCccccCcc-cCCcccCCC--------------------------------ccEEEC-cCCcCcCCCchhHhhhccCC
Q 042089 156 RLSNNSFSGIL-QLPKVKHDF--------------------------------LRHLDI-SNNNLIGTLPQNMGTVLQKL 201 (557)
Q Consensus 156 ~L~~n~l~~~~-~~~~~~~~~--------------------------------L~~L~L-~~n~l~~~~~~~~~~~l~~L 201 (557)
++++|.+.+.. +..+..++. ++.+++ ..+.+.+.+|. + ..+++|
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~-~~l~~L 287 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F-HCLANV 287 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C-GGGTTC
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-c-ccCCCC
Confidence 88888765210 001112222 334444 55666666666 3 457888
Q ss_pred cEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccc
Q 042089 202 MLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 202 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 288 ~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 288 SAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSR 359 (606)
T ss_dssp SEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCS
T ss_pred CEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcC
Confidence 88888888876 455 777888888888888888 57773 2 6788888888888655444 556778888888888
Q ss_pred cccccc--ccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccccc
Q 042089 282 NHFTGK--IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 282 n~~~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 358 (557)
|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 888765 36777788888888888888775 55777888888888888888887766 677788888888888888887
Q ss_pred cccccc-CCCCccEEEccCCcccc-cchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcccc
Q 042089 359 SIASFL-NLSSIMHLYLQKNALSG-QIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALC 436 (557)
Q Consensus 359 ~i~~~~-~~~~L~~L~L~~n~l~~-~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~ 436 (557)
.+|..+ .+++|++|++++|++++ .+|..+..+++|++|++++|++++..|.+++.+++|+.|+|++|++++.+|..+.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 766655 77888888888888887 3677788888888888888888888888888888888888888888887788888
Q ss_pred CCCCCCEEEccCCcCcCCcCccccc
Q 042089 437 QLQKLRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 437 ~l~~L~~Ldls~N~l~g~ip~~~~~ 461 (557)
.+++|+.||+++|+++ .+|..+..
T Consensus 519 ~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp TCTTCCEEECTTSCCC-CEESCGGG
T ss_pred CCCcCCEEECCCCcCc-ccCHhHhh
Confidence 8888888888888887 56665544
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-49 Score=426.53 Aligned_cols=440 Identities=22% Similarity=0.187 Sum_probs=345.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
+++++|++++|.+++..+..|+++++|++|++++|++++..|..|+++++|++|+|++|.+++ +|+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 479999999999998888899999999999999999998888899999999999999999985 4546799999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC----CEEEc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL----EVLRL 157 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L----~~L~L 157 (557)
+++|.+.... ...+..+.+|++|++++|.+. .+|..+..+++|++|++++|++++..|..+ +.+++| +.+++
T Consensus 107 L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEEC
T ss_pred ccccccccCC-CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhccc
Confidence 9999876543 334788999999999999995 579999999999999999999997666655 477787 89999
Q ss_pred cCccccCcccCCcccCCCccEEECcCCc----------------------------------------------------
Q 042089 158 SNNSFSGILQLPKVKHDFLRHLDISNNN---------------------------------------------------- 185 (557)
Q Consensus 158 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~---------------------------------------------------- 185 (557)
++|.+++..+..+.. .+|+.|++++|.
T Consensus 185 ~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 999998774433333 368888877762
Q ss_pred ------CcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 186 ------LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 186 ------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
+.+.+|..+. .+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.
T Consensus 264 l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCB
T ss_pred hhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCc
Confidence 2333344443 3677777777777776 567677777 7777777777776 5554 246777778887777
Q ss_pred cccccCccccCcccccceecccccccccc--cccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKI--KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 337 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~ 337 (557)
+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+.+..+
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc
Confidence 7655544 56778888888888777543 56677778888888888877765444 7778888888888888776655
Q ss_pred -hhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCccc-ccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 338 -VQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALS-GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 338 -~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
..+..+++|++|++++|.+.+..|..+ .+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|.+++.+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 457778888888888888877666555 6788888888888876 5677778888888888888888887778888888
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8888888888888877777778888888888888888877764
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-49 Score=444.61 Aligned_cols=442 Identities=22% Similarity=0.193 Sum_probs=299.5
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccC-chhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
.++|++|+|++|.+++..|..|+++++|++|||++|...+.+ |..|.++++|++|+|++|.+++..| ..+.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCE
Confidence 368999999999999989999999999999999999777777 7889999999999999999997666 56999999999
Q ss_pred EEecCccCcccccCC-CCCCCCcccEEECCCCCCCCc--ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcC--CCCCEEE
Q 042089 82 LRLLKVSNNLRFKTE-NWIPTFQLKVLQLPNCSLKVI--PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNN--TNLEVLR 156 (557)
Q Consensus 82 L~l~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~ 156 (557)
|++++|.+.+..+.. .+..+++|++|++++|.+..+ +..++++++|++|++++|.+++..+..+. .+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEE
Confidence 999999988765543 477899999999999999443 46799999999999999999988887764 55 8999999
Q ss_pred ccCccccCcccCCcccCC------CccEEECcCCcCcCCCchhHhhhc--------------------------------
Q 042089 157 LSNNSFSGILQLPKVKHD------FLRHLDISNNNLIGTLPQNMGTVL-------------------------------- 198 (557)
Q Consensus 157 L~~n~l~~~~~~~~~~~~------~L~~L~L~~n~l~~~~~~~~~~~l-------------------------------- 198 (557)
++.|.+.+..+.....+. .|+.|++++|.+++.++..+....
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 999999887544444444 399999999998888777665321
Q ss_pred -----cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccc
Q 042089 199 -----QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273 (557)
Q Consensus 199 -----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (557)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 345555555555555555555555555555555555553322 22344555555555555555544555555555
Q ss_pred ccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccC
Q 042089 274 LRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353 (557)
Q Consensus 274 L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 353 (557)
|++|++++|.+++..+..+..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.+++++
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~ 410 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSE 410 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCS
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeeccc
Confidence 55555555555544444455555555555555555421 12445555555555554 23322 34455666666
Q ss_pred cccccccc-c-ccCCCCccEEEccCCcccccchh-hhhcCCCCcEEeCCCCccc-----ccCCccccCCCCccEEEcCCC
Q 042089 354 NRLFGSIA-S-FLNLSSIMHLYLQKNALSGQIPS-TLLRSTELLTLDLRDNKFF-----GRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 354 n~l~~~i~-~-~~~~~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~L~~N 425 (557)
|.+++... . ...+++|++|++++|++++..+. .+..+++|++|++++|.++ +..|..+..+++|+.|+|++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 66554211 1 12566666666666666644332 2344566666666666665 333445566666777777777
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 426 ~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
++++..|..+..+++|+.|||++|++++..|
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred cccccChhHccchhhhheeECCCCCCCccCh
Confidence 7776666666667777777777777665433
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-48 Score=415.23 Aligned_cols=442 Identities=22% Similarity=0.190 Sum_probs=332.0
Q ss_pred cCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEec
Q 042089 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLL 85 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~ 85 (557)
.++++-++.+++ .+|..+. +++++||+++|++++..+..|.++++|++|+|++|.+++ ++...+.++++|++|+++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCc
Confidence 356777777776 5777664 589999999999998888899999999999999999985 555679999999999999
Q ss_pred CccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcC-CCcHHHhhcCCCCCEEEccCcccc
Q 042089 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFS 163 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~ 163 (557)
+|.+... +...+..+.+|++|++++|.+..+|. .++.+++|++|++++|.+++ .+|..+ .++++|++|++++|.++
T Consensus 85 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 85 GNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCC
T ss_pred CCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccc
Confidence 9988754 44467889999999999999977775 68999999999999999986 578876 48999999999999998
Q ss_pred CcccCCcccCCCc----cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcc-cCCccccCCC---------------
Q 042089 164 GILQLPKVKHDFL----RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG-NIPYSIGEMK--------------- 223 (557)
Q Consensus 164 ~~~~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~--------------- 223 (557)
+..+..+..+++| +.+++++|.+++..|..+. ..+|+.|++++|.... .++..+..++
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred eecHHHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 7644445566666 8999999999866665553 3378999888873221 1111112222
Q ss_pred -----------------CCcEEEcCCC-eeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccc
Q 042089 224 -----------------ELFLLDLSRN-KFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT 285 (557)
Q Consensus 224 -----------------~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 285 (557)
.++.++++.+ .+.+.++.. +..+++|++|++++|.+. .+|..+..+ +|++|++++|.++
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc
Confidence 2334444444 444444433 356777888888888776 466666666 7888888888777
Q ss_pred ccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCc--chhhccCCCCcEEEccCcccccccccc
Q 042089 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI--PVQINNFRQLEILYLSENRLFGSIASF 363 (557)
Q Consensus 286 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~i~~~ 363 (557)
.+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+.+
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 392 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccc
Confidence 4554 3567788888888877766655 56777888888888777543 667777788888888888777655555
Q ss_pred cCCCCccEEEccCCcccccch-hhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc-ccCCccccCCCCC
Q 042089 364 LNLSSIMHLYLQKNALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ-GEIPIALCQLQKL 441 (557)
Q Consensus 364 ~~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-g~ip~~l~~l~~L 441 (557)
..+++|++|++++|.+.+..| ..+.++++|++|++++|++++..|..+..+++|++|++++|+++ +.+|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 577788888888888776655 45677788888888888887777777777888888888888877 5677777788888
Q ss_pred CEEEccCCcCcCCcCccccccc
Q 042089 442 RILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 442 ~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+.||+++|++++..|..+++++
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCT
T ss_pred CEEECCCCccccCChhhhhccc
Confidence 8888888888777777666544
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-49 Score=431.23 Aligned_cols=340 Identities=18% Similarity=0.195 Sum_probs=292.4
Q ss_pred CCCCCCcChhhhCCCCCcEEEccCCcCcCC-----------------CcHHHh-hcCCCCCEEEccCccccCcccCCccc
Q 042089 111 NCSLKVIPSFLLHQYNLKFLDLSSNKLVGN-----------------FPTWLM-QNNTNLEVLRLSNNSFSGILQLPKVK 172 (557)
Q Consensus 111 ~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~ 172 (557)
.|.+..||..++++++|++|++++|+++|. +|..+. .++++|++|++++|.+.+..+..+..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456644999999999999999999999985 887752 27999999999999999886666778
Q ss_pred CCCccEEECcCCc-CcC-CCchhHhhh-----ccCCcEEeCCCCcCcccCCc--cccCCCCCcEEEcCCCeeeeecCccc
Q 042089 173 HDFLRHLDISNNN-LIG-TLPQNMGTV-----LQKLMLIDISKNNFEGNIPY--SIGEMKELFLLDLSRNKFSGDLSATS 243 (557)
Q Consensus 173 ~~~L~~L~L~~n~-l~~-~~~~~~~~~-----l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~ 243 (557)
+++|++|++++|+ ++| .+|..++.. +++|++|++++|.++ .+|. .++++++|++|++++|.+.|.+| .
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~ 348 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--A 348 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence 9999999999998 888 889888641 389999999999999 8888 89999999999999999999998 4
Q ss_pred ccCCCCCcEEeccCCccccccCccccCccc-ccceecccccccccccccccCCC--CCcEEEccCCcccCccCcccc---
Q 042089 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQ-LRGLYLKNNHFTGKIKAGLLNSH--GLVVLDISNNLLSGHIPCWIG--- 317 (557)
Q Consensus 244 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p~~l~--- 317 (557)
+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 567899999999999998 78888999999 999999999998 7888777655 899999999999999998888
Q ss_pred ----CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-C-C-------CCccEEEccCCcccccch
Q 042089 318 ----NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-N-L-------SSIMHLYLQKNALSGQIP 384 (557)
Q Consensus 318 ----~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~-~-------~~L~~L~L~~n~l~~~~p 384 (557)
.+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|... . . ++|++|++++|+++ .+|
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 7889999999999999544444566899999999999998 555432 2 2 28999999999999 788
Q ss_pred hhhh--cCCCCcEEeCCCCcccccCCccccCCCCccEEEc------CCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 385 STLL--RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL------RGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 385 ~~l~--~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L------~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
..+. .+++|++|++++|++++ +|.++..+++|+.|+| ++|++.+.+|..+..+++|+.||+++|++ +.||
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 8887 89999999999999987 8999999999999999 56788899999999999999999999999 7888
Q ss_pred ccc
Q 042089 457 SCF 459 (557)
Q Consensus 457 ~~~ 459 (557)
..+
T Consensus 583 ~~~ 585 (636)
T 4eco_A 583 EKI 585 (636)
T ss_dssp SCC
T ss_pred HhH
Confidence 754
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.3e-50 Score=436.27 Aligned_cols=431 Identities=19% Similarity=0.233 Sum_probs=331.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcC------Cc------cCchhccCCCCCCEEeCcCcccCcccChh
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL------SG------NLPSVIANLTSLEYLVLSDNNFQGEFPLS 71 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~ 71 (557)
.+++.|+|++++++|.+|++++++++|++|+|++|.+ .| .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 3678888888888888888888899999999988876 23 334333 34444 555555555544432
Q ss_pred hhcCC------------------CCCcEEEec--CccCcccccCCCCCCCCcccEEECCCCCCCC---------------
Q 042089 72 LLTNH------------------SNLEVLRLL--KVSNNLRFKTENWIPTFQLKVLQLPNCSLKV--------------- 116 (557)
Q Consensus 72 ~~~~l------------------~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--------------- 116 (557)
....+ ..++.+.+. .|.+++ +|. .+..+++|++|++++|.+..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchh
Confidence 11000 011111111 334444 444 35666677777777777744
Q ss_pred ---cChhhh--CCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc-ccC-cccCCccc------CCCccEEECcC
Q 042089 117 ---IPSFLL--HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS-FSG-ILQLPKVK------HDFLRHLDISN 183 (557)
Q Consensus 117 ---ip~~l~--~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~------~~~L~~L~L~~ 183 (557)
+|..++ ++++|++|++++|++.+.+|..+. ++++|++|++++|. ++| ..+..+.. +++|++|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 787777 888888888888888888887664 78888888888887 776 42222333 37889999999
Q ss_pred CcCcCCCch--hHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCC-CcEEeccCCcc
Q 042089 184 NNLIGTLPQ--NMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCAS-LEYLDVSENNF 260 (557)
Q Consensus 184 n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~Ls~n~l 260 (557)
|+++ .+|. .++ .+++|+.|++++|.++|.+| .++.+++|++|++++|.+. .+|..+ ..+++ |++|++++|.+
T Consensus 315 n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 315 NNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF-CGFTEQVENLSFAHNKL 389 (636)
T ss_dssp SCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS-EEECTTCCEEECCSSCC
T ss_pred CcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh-hhhcccCcEEEccCCcC
Confidence 9888 8887 665 58899999999999998888 8889999999999999988 787764 56788 99999999998
Q ss_pred ccccCccccCcc--cccceeccccccccccccccc-------CCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCc
Q 042089 261 YGHIFPTYMNLT--QLRGLYLKNNHFTGKIKAGLL-------NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331 (557)
Q Consensus 261 ~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~l~-------~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~ 331 (557)
+ .+|..+..++ +|++|++++|.+++.+|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 8 7777776654 899999999999988888887 77799999999999985434445668999999999999
Q ss_pred CCCCcchhhcc--------CCCCcEEEccCccccccccc-cc--CCCCccEEEccCCcccccchhhhhcCCCCcEEeC--
Q 042089 332 LEGNIPVQINN--------FRQLEILYLSENRLFGSIAS-FL--NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL-- 398 (557)
Q Consensus 332 l~~~~~~~l~~--------l~~L~~L~L~~n~l~~~i~~-~~--~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L-- 398 (557)
++ .+|..+.. +++|++|++++|+++ .+|. +. .+++|++|++++|++++ +|..+.++++|++|++
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 98 55654432 238999999999998 4554 43 78999999999999997 8999999999999999
Q ss_pred ----CCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 399 ----RDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 399 ----~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
++|++.+.+|.+++.+++|++|+|++|++ +.+|..+. ++|+.||+++|++.
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 56888999999999999999999999999 68998876 89999999999887
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=431.28 Aligned_cols=448 Identities=22% Similarity=0.218 Sum_probs=355.4
Q ss_pred CCCCcCEEeCCCCCCcccC-CccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccCh-hhhcCCCCC
Q 042089 2 KLKNLTELDLRENNLEGQL-PWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPL-SLLTNHSNL 79 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~-~~~~~l~~L 79 (557)
++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|. .++.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 6889999999999877777 78899999999999999999999999999999999999999999987664 348899999
Q ss_pred cEEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCC--CCCcEEEccCCcCcCCCcHHHhhcCCC-----
Q 042089 80 EVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQ--YNLKFLDLSSNKLVGNFPTWLMQNNTN----- 151 (557)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~~l~~----- 151 (557)
++|++++|.+.+..+...+..+++|++|++++|.+ +..|..+..+ ++|+.|+++.|.+.+..|..+. .+++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~ 204 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNM 204 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCccccC
Confidence 99999999998766656678999999999999999 6677777776 8899999999999887776543 4444
Q ss_pred -CCEEEccCccccCcccCC------------------------------------cc--cCCCccEEECcCCcCcCCCch
Q 042089 152 -LEVLRLSNNSFSGILQLP------------------------------------KV--KHDFLRHLDISNNNLIGTLPQ 192 (557)
Q Consensus 152 -L~~L~L~~n~l~~~~~~~------------------------------------~~--~~~~L~~L~L~~n~l~~~~~~ 192 (557)
|+.|++++|.+++..... +. ..++|+.|++++|.+.+..+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 899999998765432111 01 136899999999999866666
Q ss_pred hHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcc
Q 042089 193 NMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT 272 (557)
Q Consensus 193 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (557)
.+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 285 ~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS-CSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH-HHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 664 58999999999999998889999999999999999999974444 4557899999999999999887777889999
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC-cchhhccCCCCcEEEc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN-IPVQINNFRQLEILYL 351 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L 351 (557)
+|++|++++|.+++. + .+++|+.|++++|.++ .+|.. ...++.|++++|++++. .+..+..+++|+.|++
T Consensus 363 ~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 363 KLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 999999999998742 2 2678899999999887 44543 45677888888887764 3334557778888888
Q ss_pred cCccccccccc--ccCCCCccEEEccCCccc-----ccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 352 SENRLFGSIAS--FLNLSSIMHLYLQKNALS-----GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 352 ~~n~l~~~i~~--~~~~~~L~~L~L~~n~l~-----~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
++|++++..+. ...+++|++|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|+.|+|++
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 88887764433 225677788888888776 33445567777788888888888777777777778888888888
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 425 N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
|++++..|..+. ++|+.||+++|+++|.+|..+.++.
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence 887765555554 6777888888888777777665544
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.8e-48 Score=412.80 Aligned_cols=441 Identities=19% Similarity=0.145 Sum_probs=303.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|+|++|.+++ ++...++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEE
Confidence 478888888888887777888888888888888888887777888888888888888888874 4445678888888888
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCC-CCCcC-hhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCS-LKVIP-SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
+++|.+.+......+..+++|++|++++|. ++.+| ..+..+++|++|++++|++++.+|..+. ++++|++|+++.|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccCc
Confidence 888877653223356677788888888887 46666 4677788888888888888776766653 66666667666666
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCC--chhHhhhccCCcEEeCCCCcCcccCC----ccccCCCCCcEEEcCCCee
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTL--PQNMGTVLQKLMLIDISKNNFEGNIP----YSIGEMKELFLLDLSRNKF 235 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l 235 (557)
+..........+++|++|++++|++++.. |..+...+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 54332111224566666666666666421 22222234556666666655544322 2223445555555555554
Q ss_pred eeecC--------------------------c--------ccccCCCCCcEEeccCCccccccCccc-cCcccccceecc
Q 042089 236 SGDLS--------------------------A--------TSVNGCASLEYLDVSENNFYGHIFPTY-MNLTQLRGLYLK 280 (557)
Q Consensus 236 ~~~~~--------------------------~--------~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~ 280 (557)
.+... . .......+|++|++++|.+. .+|..+ ..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 43100 0 00122356777777777765 455544 467788888888
Q ss_pred ccccccccc---ccccCCCCCcEEEccCCcccCccC--ccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcc
Q 042089 281 NNHFTGKIK---AGLLNSHGLVVLDISNNLLSGHIP--CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 281 ~n~~~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~p--~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 355 (557)
+|.+++.+| ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 888877653 336677788888888888776432 45677788888888888877 567777777888888888887
Q ss_pred cccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccc
Q 042089 356 LFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435 (557)
Q Consensus 356 l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 435 (557)
+++ +|... .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. .+.+++|++|+|++|++++.+|..+
T Consensus 422 l~~-l~~~~-~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 422 IRV-VKTCI-PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp CSC-CCTTS-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ccc-ccchh-cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 763 23222 257888888888887643 46778888888888886 6665 4567888888888888888777778
Q ss_pred cCCCCCCEEEccCCcCcCCcC
Q 042089 436 CQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 436 ~~l~~L~~Ldls~N~l~g~ip 456 (557)
..+++|+.||+++|+++|.+|
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHH
T ss_pred hcCcccCEEEecCCCccCCCc
Confidence 888888888888888887776
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-47 Score=404.93 Aligned_cols=431 Identities=22% Similarity=0.214 Sum_probs=328.3
Q ss_pred CEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecC
Q 042089 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86 (557)
Q Consensus 7 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~ 86 (557)
++|++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..| ..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence 68999999999 6888777 899999999999998888999999999999999999996656 5689999999999999
Q ss_pred ccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC--CEEEccCccc
Q 042089 87 VSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL--EVLRLSNNSF 162 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~L~~n~l 162 (557)
|.+. .+|.. .+.+|++|++++|.+. .+|..++.+++|++|++++|++++. . +..+++| +.|++++|.+
T Consensus 79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTT
T ss_pred Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccc
Confidence 9987 45554 7889999999999994 4789999999999999999999862 2 3478888 9999999998
Q ss_pred --cCcccCCcccCC-CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCc-------CcccCCccccCCCCCcEEEcCC
Q 042089 163 --SGILQLPKVKHD-FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNN-------FEGNIPYSIGEMKELFLLDLSR 232 (557)
Q Consensus 163 --~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L~~L~L~~ 232 (557)
.+..+..+..+. ....+++++|.+.+.++......+++|+.+++++|. +.+.+| .++.+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 444322222222 233566777777766666555556777777777765 454444 556666666666655
Q ss_pred CeeeeecCccccc--CCCCCcEEeccCCccccccCccc-----cCccc--------------------------ccceec
Q 042089 233 NKFSGDLSATSVN--GCASLEYLDVSENNFYGHIFPTY-----MNLTQ--------------------------LRGLYL 279 (557)
Q Consensus 233 n~l~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~--------------------------L~~L~L 279 (557)
|.+.+..+..... .+++|++|++++|.+.|.+|..+ ..+++ |+.|++
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 5554332211110 12355555665555555555554 44444 455555
Q ss_pred ccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCC--CcchhhccCCCCcEEEccCcccc
Q 042089 280 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLEILYLSENRLF 357 (557)
Q Consensus 280 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 357 (557)
++|.+.+.. ....+++|++|++++|.+++.+|.+++.+++|++|++++|++++ .+|..+..+++|++|++++|.++
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 555443211 12567889999999999998888889999999999999999987 56778889999999999999998
Q ss_pred ccccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc-
Q 042089 358 GSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA- 434 (557)
Q Consensus 358 ~~i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~- 434 (557)
+.+|. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|.++..+++|++|++++|+++ .+|..
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 463 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHH
Confidence 76664 34788999999999999888877664 68999999999997 88888888999999999999998 56665
Q ss_pred ccCCCCCCEEEccCCcCcCCcC
Q 042089 435 LCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 435 l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+..+++|+.|++++|++++..+
T Consensus 464 ~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred hccCCcccEEECcCCCCcccCC
Confidence 8889999999999999987654
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.5e-47 Score=405.12 Aligned_cols=439 Identities=17% Similarity=0.173 Sum_probs=340.3
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
|+...+.+.+++.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|.+++..| ..+.++++|++|
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred CCCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEE
Confidence 556667888999988 6787765 799999999999999889999999999999999999996555 568999999999
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN 160 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n 160 (557)
++++|.+.+..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|...+.++++|++|++++|
T Consensus 80 ~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 80 DLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp ECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCccCccCHH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 9999998765443 4678899999999999995 457789999999999999999666777655569999999999999
Q ss_pred cccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccC--C-ccccCCCCCcEEEcCCCeeee
Q 042089 161 SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNI--P-YSIGEMKELFLLDLSRNKFSG 237 (557)
Q Consensus 161 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~L~L~~n~l~~ 237 (557)
.+++..+..+..+++|++|+++.|.+. .+|..+...+++|+.|++++|.+++.. | .....+++|+.|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 999876566778999999999999876 677777667899999999999998642 2 223567899999999999986
Q ss_pred ecCccc---ccCCCCCcEEeccCCcccccc------CccccCcccccceeccccccccc-----ccccccCCCCCcEEEc
Q 042089 238 DLSATS---VNGCASLEYLDVSENNFYGHI------FPTYMNLTQLRGLYLKNNHFTGK-----IKAGLLNSHGLVVLDI 303 (557)
Q Consensus 238 ~~~~~~---~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~~~~~-----~~~~l~~~~~L~~L~L 303 (557)
..+... ...+++|+.+++++|.+.+.. ...+..+.+++.+.+.++.+... ++..+....+|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 554432 346789999999999887632 12345667788888877765432 1111223467888888
Q ss_pred cCCcccCccCccc-cCCCCCcEEEcCCCcCCCCcch---hhccCCCCcEEEccCcccccccc--c-ccCCCCccEEEccC
Q 042089 304 SNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPV---QINNFRQLEILYLSENRLFGSIA--S-FLNLSSIMHLYLQK 376 (557)
Q Consensus 304 s~n~l~~~~p~~l-~~~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~i~--~-~~~~~~L~~L~L~~ 376 (557)
++|.++ .+|..+ ..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ . +..+++|++|++++
T Consensus 318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred ccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence 888776 566655 4678888888888888876643 36677888888888888765432 2 33678888888888
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|+.||+++|+++ .||
T Consensus 397 N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 397 NTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp CCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCC
T ss_pred CCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCC
Confidence 8887 57777777888888888888875 344333 257888888888887643 46778888888888887 676
Q ss_pred c
Q 042089 457 S 457 (557)
Q Consensus 457 ~ 457 (557)
.
T Consensus 468 ~ 468 (549)
T 2z81_A 468 D 468 (549)
T ss_dssp C
T ss_pred C
Confidence 5
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.2e-47 Score=419.38 Aligned_cols=415 Identities=19% Similarity=0.205 Sum_probs=332.8
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEEC-CCCcCCccCchhc----------------------------------
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDI-SSNQLSGNLPSVI---------------------------------- 48 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~l---------------------------------- 48 (557)
.+++.|+|++++++|.+|+.|+++++|++||| ++|.++|..|..-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46899999999999999999999999999999 8888877643221
Q ss_pred -----------------cCCCCCCEEeCcC--cccCcccChhhhcCCCCCcEEEecCccCccc-----------------
Q 042089 49 -----------------ANLTSLEYLVLSD--NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR----------------- 92 (557)
Q Consensus 49 -----------------~~l~~L~~L~Ls~--n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~----------------- 92 (557)
.....++.+.+.. |.++| +|. .++++++|++|++++|.+++.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1222344444444 88887 896 489999999999999999882
Q ss_pred ccCCCCC--CCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCc-CcC-CCcHHHhhcCC-------CCCEEEccCc
Q 042089 93 FKTENWI--PTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNK-LVG-NFPTWLMQNNT-------NLEVLRLSNN 160 (557)
Q Consensus 93 ~~~~~~~--~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~-l~~-~~p~~~~~~l~-------~L~~L~L~~n 160 (557)
+|.. +. .+++|++|++++|.+ +.+|..++.+++|++|++++|+ ++| .+|..+. +++ +|++|++++|
T Consensus 481 iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSS
T ss_pred CChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCC
Confidence 5554 44 899999999999997 9999999999999999999998 998 8998764 454 9999999999
Q ss_pred cccCcccC--CcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCC-CcEEEcCCCeeee
Q 042089 161 SFSGILQL--PKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKE-LFLLDLSRNKFSG 237 (557)
Q Consensus 161 ~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~ 237 (557)
.++.. +. .+..+++|+.|++++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+.
T Consensus 559 ~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 559 NLEEF-PASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CCCBC-CCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred cCCcc-CChhhhhcCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 99943 22 3568999999999999999 888 554 5899999999999999 89999999999 999999999998
Q ss_pred ecCcccccCCC--CCcEEeccCCccccccCccc---c--Ccccccceecccccccccccccc-cCCCCCcEEEccCCccc
Q 042089 238 DLSATSVNGCA--SLEYLDVSENNFYGHIFPTY---M--NLTQLRGLYLKNNHFTGKIKAGL-LNSHGLVVLDISNNLLS 309 (557)
Q Consensus 238 ~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~~~~~~~~~l-~~~~~L~~L~Ls~n~l~ 309 (557)
.+|..+ ..++ +|+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++
T Consensus 633 ~lp~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 YIPNIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp SCCSCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred cCchhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 777654 3443 49999999999998766432 2 3458999999999999 556554 47899999999999999
Q ss_pred CccCccccCC--------CCCcEEEcCCCcCCCCcchhhc--cCCCCcEEEccCccccccccc-ccCCCCccEEEccCCc
Q 042089 310 GHIPCWIGNF--------SYLDVLLMSKNHLEGNIPVQIN--NFRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNA 378 (557)
Q Consensus 310 ~~~p~~l~~~--------~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~n~ 378 (557)
.+|..+... ++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|. +..+++|+.|+|++|+
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred -ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 666655432 38999999999999 7888887 89999999999999987 554 4488888888888764
Q ss_pred ccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 379 LSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 379 l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++++|++.+.+|.+++.+++|+.|+|++|++ +.+|..+. ++|+.|||++|++...
T Consensus 788 ------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 788 ------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp ------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred ------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 4555666666666666666666666666666 56666544 4666677777766543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.4e-46 Score=409.95 Aligned_cols=421 Identities=19% Similarity=0.196 Sum_probs=342.8
Q ss_pred CCCCEEECCCCcCCccCchhccCCCCCCEEeC-cCcccCcccChhhhcCCCCCcE-----EEe----------cCccCcc
Q 042089 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVL-SDNNFQGEFPLSLLTNHSNLEV-----LRL----------LKVSNNL 91 (557)
Q Consensus 28 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~g~~p~~~~~~l~~L~~-----L~l----------~~~~~~~ 91 (557)
.+++.|+|++|++.|.+|+.|+++++|++|+| ++|.+.|..|.........+.. ++. ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 67999999999999999999999999999999 9999988755321110000000 000 0000000
Q ss_pred ----------cccCCCCCCCCcccEEECCC--CCCCCcChhhhCCCCCcEEEccCCcCcC-----------------CCc
Q 042089 92 ----------RFKTENWIPTFQLKVLQLPN--CSLKVIPSFLLHQYNLKFLDLSSNKLVG-----------------NFP 142 (557)
Q Consensus 92 ----------~~~~~~~~~~~~L~~L~L~~--n~l~~ip~~l~~~~~L~~L~Ls~n~l~~-----------------~~p 142 (557)
............++.+.+.. |.+..||..++++++|++|+|++|+++| .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 00000011222344444443 5664499999999999999999999998 388
Q ss_pred HHH-hhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCc-CcC-CCchhHhhhcc-------CCcEEeCCCCcCc
Q 042089 143 TWL-MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN-LIG-TLPQNMGTVLQ-------KLMLIDISKNNFE 212 (557)
Q Consensus 143 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~~l~-------~L~~L~L~~n~l~ 212 (557)
..+ +.++++|++|++++|.+.+..+..+..+++|+.|++++|+ ++| .+|..++. ++ +|+.|++++|.++
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCCcCC
Confidence 876 3489999999999999998865556799999999999998 998 89988864 55 9999999999999
Q ss_pred ccCCc--cccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccc-ccceeccccccccccc
Q 042089 213 GNIPY--SIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ-LRGLYLKNNHFTGKIK 289 (557)
Q Consensus 213 ~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~ 289 (557)
.+|. .++++++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 8998 8999999999999999998 888 4578999999999999998 88889999999 999999999999 788
Q ss_pred ccccCCCC--CcEEEccCCcccCccCccc---c--CCCCCcEEEcCCCcCCCCcchhh-ccCCCCcEEEccCcccccccc
Q 042089 290 AGLLNSHG--LVVLDISNNLLSGHIPCWI---G--NFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 290 ~~l~~~~~--L~~L~Ls~n~l~~~~p~~l---~--~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~i~ 361 (557)
..+...+. |+.|++++|.+++.+|... . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 88776654 9999999999998877543 2 3458999999999999 556554 58999999999999998 555
Q ss_pred ccc-C--------CCCccEEEccCCcccccchhhhh--cCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC------
Q 042089 362 SFL-N--------LSSIMHLYLQKNALSGQIPSTLL--RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG------ 424 (557)
Q Consensus 362 ~~~-~--------~~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~------ 424 (557)
... . +++|++|+|++|+++ .+|..+. .+++|+.|++++|++++ +|.++..+++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 433 2 239999999999999 7888887 89999999999999987 899999999999999976
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcCCcCcccc
Q 042089 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFA 460 (557)
Q Consensus 425 N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~ 460 (557)
|++.+.+|..+..+++|+.|+|++|++ +.||..+.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 889999999999999999999999999 89998653
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-45 Score=388.97 Aligned_cols=415 Identities=20% Similarity=0.191 Sum_probs=337.0
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEe
Confidence 58999999999999888889999999999999999999888999999999999999999998 68754 899999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCC--cEEEccCCcC--cCCCcHHHhh------------
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNL--KFLDLSSNKL--VGNFPTWLMQ------------ 147 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L--~~L~Ls~n~l--~~~~p~~~~~------------ 147 (557)
+++|.+.+...+..+..+++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 999998763223357889999999999999954 356777788 9999999998 6677765531
Q ss_pred -------------cCCCCCEEEccCcc-------ccCcccCCcccCCCccEEECcCCcCcCCCchhHhh--hccCCcEEe
Q 042089 148 -------------NNTNLEVLRLSNNS-------FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGT--VLQKLMLID 205 (557)
Q Consensus 148 -------------~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~ 205 (557)
++++|+.+++++|. +.+..+ .+..+++|+.|++++|.+++..+..+.. ..++|+.|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 24445555555543 332211 2335566666666666665443333221 135888999
Q ss_pred CCCCcCcccCCccc-----cCCCCCcEEEcCCCeeeeecCcccccCC---CCCcEEeccCCccccccCccccCcccccce
Q 042089 206 ISKNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGDLSATSVNGC---ASLEYLDVSENNFYGHIFPTYMNLTQLRGL 277 (557)
Q Consensus 206 L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (557)
+++|.++|.+|..+ +++++|+.++++.|.+ .+|...+..+ .+|+.|++++|.+.... ....+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 99998888888888 8888999999988888 5663322233 57999999999876432 12688999999
Q ss_pred ecccccccccccccccCCCCCcEEEccCCcccC--ccCccccCCCCCcEEEcCCCcCCCCcchh-hccCCCCcEEEccCc
Q 042089 278 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLEILYLSEN 354 (557)
Q Consensus 278 ~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n 354 (557)
++++|.+++.+|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++.+|.. +..+++|+.|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 999999999899999999999999999999997 67788999999999999999999867764 788999999999999
Q ss_pred ccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCcc-ccCCCCccEEEcCCCcccccCC
Q 042089 355 RLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ-INKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 355 ~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~ip 432 (557)
.+++.+|.... ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..+
T Consensus 410 ~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 410 ILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99987776543 79999999999999 88988889999999999999998 56665 8999999999999999987654
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.8e-44 Score=383.71 Aligned_cols=436 Identities=21% Similarity=0.212 Sum_probs=330.4
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
+...++++++++++++ +|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..| ..+.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEE
Confidence 3455899999999995 887775 899999999999998888999999999999999999996555 568999999999
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCCCc--ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC--CEEEcc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI--PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL--EVLRLS 158 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~L~ 158 (557)
++++|.+. .+|.. .+.+|++|++++|.+..+ |..++.+++|++|++++|++++... ..+++| ++|+++
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLD 177 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEE
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhceeeEEEee
Confidence 99999987 45553 788999999999999654 5899999999999999999986322 355666 999999
Q ss_pred Cccc--cCcccCCcccCC-CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCc-----CcccCCccccCCCCCcEEEc
Q 042089 159 NNSF--SGILQLPKVKHD-FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNN-----FEGNIPYSIGEMKELFLLDL 230 (557)
Q Consensus 159 ~n~l--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L 230 (557)
+|.+ ++..+..+..+. ..-.++++.|.+.+.++......+++|+.+++++|. +.+. +..+..+++|+.+++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTL 256 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEe
Confidence 9998 655333333322 122557778887777776555567788888887774 1111 123444455555544
Q ss_pred CCCeeeeecCccc--ccCCCCCcEEeccCCccccccCccc-----cCc--------------------------ccccce
Q 042089 231 SRNKFSGDLSATS--VNGCASLEYLDVSENNFYGHIFPTY-----MNL--------------------------TQLRGL 277 (557)
Q Consensus 231 ~~n~l~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l--------------------------~~L~~L 277 (557)
.++.+.+...... ....++|++|++++|.+.|.+|..+ ..+ .+|++|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 4444332110000 0012245555555555544444433 122 457777
Q ss_pred ecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCC--CcchhhccCCCCcEEEccCcc
Q 042089 278 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 278 ~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~ 355 (557)
++++|.+.... ....+++|++|++++|.+++.+|..++++++|++|++++|++++ .+|..+..+++|++|++++|.
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 77777765321 12578899999999999999999999999999999999999997 456778999999999999999
Q ss_pred ccccccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCc
Q 042089 356 LFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPI 433 (557)
Q Consensus 356 l~~~i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 433 (557)
+++.+|. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|.++..+++|++|+|++|+++ .+|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 9986664 33789999999999999988877664 68999999999997 78888889999999999999999 5666
Q ss_pred c-ccCCCCCCEEEccCCcCcCCcCc
Q 042089 434 A-LCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 434 ~-l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
. +..+++|+.|++++|++++..|-
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCcCCCcch
Confidence 6 89999999999999999987763
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.7e-43 Score=364.89 Aligned_cols=373 Identities=24% Similarity=0.283 Sum_probs=261.8
Q ss_pred CCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCccc
Q 042089 26 DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLK 105 (557)
Q Consensus 26 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 105 (557)
+.++|++|++++|++ |.+|+.++++++|++|++++|.+.|.+|.. ++++++|+.+++.++.. .+++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~------------~~l~ 74 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLD------------RQAH 74 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHH------------HTCS
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhc------------cCCC
Confidence 357888888888888 688888888888888888888888888853 66666666555544321 3577
Q ss_pred EEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCc
Q 042089 106 VLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185 (557)
Q Consensus 106 ~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 185 (557)
+|++++|.+..+|.. .++|++|++++|++++ +|. .+++|++|++++|.+++.... .++|++|++++|+
T Consensus 75 ~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 75 ELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQ 142 (454)
T ss_dssp EEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSC
T ss_pred EEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCC
Confidence 888888888767652 3678888888888885 664 347888888888888765322 2578888888888
Q ss_pred CcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccC
Q 042089 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIF 265 (557)
Q Consensus 186 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 265 (557)
+++ +| .++ .+++|++|++++|.+++ +|..+ .+|++|++++|.+.+ +|. +..+++|++|++++|.+++ +|
T Consensus 143 l~~-lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 143 LEK-LP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKK-LP 211 (454)
T ss_dssp CSS-CC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSS-CC
T ss_pred CCC-Cc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCc-CC
Confidence 885 77 343 57888888888888875 56543 478888888888874 553 4678888888888888875 33
Q ss_pred ccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCC
Q 042089 266 PTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345 (557)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 345 (557)
.. .++|++|++++|.++ .+|. +..+++|++|++++|.+++ +|.. +++|+.|++++|++++ +|.. .++
T Consensus 212 ~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~ 278 (454)
T 1jl5_A 212 DL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQS 278 (454)
T ss_dssp CC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred CC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCc
Confidence 32 258888899988887 6664 7788899999999998886 4543 3788999999998886 4543 378
Q ss_pred CcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCC
Q 042089 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 425 (557)
|++|++++|.+++ +|.. .++|++|++++|++++ ++. -.++|++|++++|++++ +|.. +++|++|++++|
T Consensus 279 L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 279 LTFLDVSENIFSG-LSEL--PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp CCEEECCSSCCSE-ESCC--CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CCEEECcCCccCc-ccCc--CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 9999999999886 2221 2689999999999885 331 12589999999999986 6665 578999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcC--CcCccccccc
Q 042089 426 YLQGEIPIALCQLQKLRILDLSHNKLNG--SIPSCFANVL 463 (557)
Q Consensus 426 ~l~g~ip~~l~~l~~L~~Ldls~N~l~g--~ip~~~~~l~ 463 (557)
+++ .+|. .+++|+.||+++|++++ .+|..++++.
T Consensus 348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLR 383 (454)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred ccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence 999 5776 47899999999999999 8888776653
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-41 Score=368.89 Aligned_cols=442 Identities=21% Similarity=0.192 Sum_probs=281.9
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
++++|||++|.|++..+.+|+++++|++|||++|++++..|.+|.++++|++|+|++|+++ .+|..+|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 7899999999999877789999999999999999999888889999999999999999998 677778999999999999
Q ss_pred cCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCC----CCEEEcc
Q 042089 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTN----LEVLRLS 158 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~----L~~L~L~ 158 (557)
++|.+++ ++...+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..|..+ ..+++ ...++++
T Consensus 132 s~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 132 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLS 209 (635)
T ss_dssp TTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECT
T ss_pred CCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcc
Confidence 9998875 44446788999999999999994 568899999999999999999997666654 24433 4578888
Q ss_pred CccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccC--------------------------------------
Q 042089 159 NNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQK-------------------------------------- 200 (557)
Q Consensus 159 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~-------------------------------------- 200 (557)
.|.+....+... ....++.+++.+|.....++......+..
T Consensus 210 ~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 888876532221 33345556665554332222222122222
Q ss_pred -------------------CcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCccc------------------
Q 042089 201 -------------------LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS------------------ 243 (557)
Q Consensus 201 -------------------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~------------------ 243 (557)
++.+++..+.+... ..+.....++.|++.+|.+.+ ++...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESS-CCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccC-cCcccchhhhhcccccccCCCCc
Confidence 22222222222211 112333445555555554431 11110
Q ss_pred -ccCCCCCcEEeccCCcccc--ccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccC-ccccCC
Q 042089 244 -VNGCASLEYLDVSENNFYG--HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNF 319 (557)
Q Consensus 244 -~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~~ 319 (557)
...+++|+.++++.|.+.. ..+.....+.+|+.+++..+.... .+..+..+++|+.++++.+......+ ..+..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence 0123334444444443321 122222233344444444443332 23334455566666666555444333 345556
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEe
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLD 397 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 397 (557)
+.++.++++.|.+.+..+..+..++.++.|++++|.+.. .+|..+ .+++|++|+|++|++++..|..|.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 666666666666666666666666677777777665433 334333 566677777777777666666666677777777
Q ss_pred CCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCC-CCCCEEEccCCcCcCC
Q 042089 398 LRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL-QKLRILDLSHNKLNGS 454 (557)
Q Consensus 398 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ 454 (557)
|++|++++..|..++.+++|++|+|++|++++..|..+..+ ++|++|++++|++++.
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 77777766666666666777777777777776666666666 4677777777776643
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-42 Score=357.57 Aligned_cols=397 Identities=23% Similarity=0.276 Sum_probs=251.1
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCC-------------CEEeCcCcccCccc
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSL-------------EYLVLSDNNFQGEF 68 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~g~~ 68 (557)
+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 357899999999999 8999999999999999999999999999999998875 999999999884 5
Q ss_pred ChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhc
Q 042089 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQN 148 (557)
Q Consensus 69 p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 148 (557)
|. -.++|++|++++|.+.+ ++. ...+|++|++++|.+..+|... ++|++|++++|++++ +|. +.+
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp~--~~~ 151 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LPE--LQN 151 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CCC--CTT
T ss_pred CC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCC-Ccc--cCC
Confidence 53 13788999999888876 443 2368899999998887666432 678999999998885 773 458
Q ss_pred CCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEE
Q 042089 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLL 228 (557)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 228 (557)
+++|++|++++|.+++... ...+|++|++++|++++ +| .+. .+++|+.|++++|.+++ +|... ++|++|
T Consensus 152 l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK-LPDLP---LSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS-CCCCC---TTCCEE
T ss_pred CCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc-CCCCc---CcccEE
Confidence 8889999999888886421 23578888888888885 66 343 57888888888888875 44432 578888
Q ss_pred EcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcc
Q 042089 229 DLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 308 (557)
Q Consensus 229 ~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l 308 (557)
++++|.+. .+|. +..+++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|.+
T Consensus 221 ~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 221 VAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp ECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred ECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 88888887 6764 4678888888888888875 3432 3678888888888875 4543 37788888888888
Q ss_pred cCccCccccCCCCCcEEEcCCCcCCCCcchhhccC-CCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh
Q 042089 309 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF-RQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387 (557)
Q Consensus 309 ~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l 387 (557)
++. |.. .++|++|++++|.+++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|.
T Consensus 290 ~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 290 SGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp SEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-CCCC--
T ss_pred Ccc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--CCcCCEEECCCCccc-cccc--
Confidence 762 211 2578888888888875 22 23 478888888888876 5543 577888888888887 4665
Q ss_pred hcCCCCcEEeCCCCcccc--cCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC--CcCccccccc
Q 042089 388 LRSTELLTLDLRDNKFFG--RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG--SIPSCFANVL 463 (557)
Q Consensus 388 ~~~~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g--~ip~~~~~l~ 463 (557)
.+++|++|++++|++++ .+|.+++. |+.|.+.|.+|.. +++|+.||+++|+++| .||+++.++.
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhhHhhee
Confidence 46778888888888877 67766543 2346677777753 4789999999999998 8998887775
Q ss_pred c
Q 042089 464 F 464 (557)
Q Consensus 464 ~ 464 (557)
.
T Consensus 423 ~ 423 (454)
T 1jl5_A 423 M 423 (454)
T ss_dssp -
T ss_pred C
Confidence 3
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.1e-42 Score=357.45 Aligned_cols=366 Identities=20% Similarity=0.208 Sum_probs=271.4
Q ss_pred cccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCC
Q 042089 17 EGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE 96 (557)
Q Consensus 17 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 96 (557)
.+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++ +| ++++++|++|++++|.+.+. +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--
Confidence 334455677788888888888888854 5 67788888888888888875 44 66778888888888777653 2
Q ss_pred CCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCc
Q 042089 97 NWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176 (557)
Q Consensus 97 ~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 176 (557)
+..+++|++|++++|.+..+| ++.+++|++|++++|++++ ++ +.++++|++|++++|...+. .++..+++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~--~~~~~l~~L 172 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITK--LDVTPQTQL 172 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCC--CCCTTCTTC
T ss_pred -cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccc--cccccCCcC
Confidence 566777888888888876666 6777888888888888875 44 34778888888888865554 356677778
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEecc
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS 256 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 256 (557)
++|++++|++++ +| + ..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|+++
T Consensus 173 ~~L~ls~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCS 241 (457)
T ss_dssp CEEECCSSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC
T ss_pred CEEECCCCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEee
Confidence 888888888774 45 3 3467788888888887754 36777888888888888775 55 4567778888888
Q ss_pred CCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCc
Q 042089 257 ENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336 (557)
Q Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 336 (557)
+|.+++.. +..+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+
T Consensus 242 ~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 242 VNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred CCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 88777643 345666777766554 45567777777777776 456788888888888877777
Q ss_pred chhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCC
Q 042089 337 PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSE 416 (557)
Q Consensus 337 ~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~ 416 (557)
|. .+++|+.+++++| ++|++|++++|++++ ++ +.+|++|++|++++|++++ ++.
T Consensus 303 ~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 303 DC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp EC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred cc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccc
Confidence 74 3456666666654 688999999999997 43 8899999999999999976 245
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCccccc
Q 042089 417 LRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 417 L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~ 461 (557)
|..|++++|+++|. +.+..|+.+|+++|+++|.||+.+..
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 77788999999987 34567888999999999999987643
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.8e-41 Score=350.55 Aligned_cols=382 Identities=19% Similarity=0.176 Sum_probs=237.5
Q ss_pred EEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCc
Q 042089 8 ELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87 (557)
Q Consensus 8 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~ 87 (557)
.++.++++++ .+|. +. ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...+
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-------------- 75 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-------------- 75 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT--------------
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc--------------
Confidence 4455555554 3444 22 5566666666666655566666666666666666665555544333
Q ss_pred cCcccccCCCCCCCCcccEEECCCCCCCC-cChhhhCCCCCcEEEccCCcCcCCCcHH-HhhcCCCCCEEEccCccccCc
Q 042089 88 SNNLRFKTENWIPTFQLKVLQLPNCSLKV-IPSFLLHQYNLKFLDLSSNKLVGNFPTW-LMQNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 88 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-ip~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~l~~~ 165 (557)
..+++|++|++++|.+.. .|..+..+++|++|++++|++++.+|.. .+.++++|++|++++|.+++.
T Consensus 76 -----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 76 -----------RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp -----------TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred -----------cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 444455555555555633 3667778888888888888888655443 234677777777777777665
Q ss_pred ccCC-cccCCCccEEECcCCcCcCCCchhHhhhc--cCCcEEeCCCCcCcccCCccc--------cCCCCCcEEEcCCCe
Q 042089 166 LQLP-KVKHDFLRHLDISNNNLIGTLPQNMGTVL--QKLMLIDISKNNFEGNIPYSI--------GEMKELFLLDLSRNK 234 (557)
Q Consensus 166 ~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l--------~~l~~L~~L~L~~n~ 234 (557)
.+.. +..+++|++|++++|.+++..+..+.. + .+|+.+++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG-GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred CcccccCCCCcccEEeCCCCcccccChhhhhc-cccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 3222 345666666666666666555554432 2 456666666666654333222 233445555555555
Q ss_pred eeeecCcccccC--CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCcc
Q 042089 235 FSGDLSATSVNG--CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI 312 (557)
Q Consensus 235 l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 312 (557)
+.+..+..+... .++|+.|++++|...+... ..+.+.+..
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------------~~~~~~~~~ 265 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------------------------------GHTNFKDPD 265 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------------------------------TCCSSCCCC
T ss_pred ccccchhhhhccccccceeeEeecccccccccc--------------------------------------chhhhccCc
Confidence 444333332211 1344444444443322110 011111111
Q ss_pred Ccccc--CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhc
Q 042089 313 PCWIG--NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLR 389 (557)
Q Consensus 313 p~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~ 389 (557)
+..+. ..++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+ .+++|++|++++|++++..|..+.+
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 11111 12456666666666666666666666666666666666666555433 6777777777778887777888899
Q ss_pred CCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 390 STELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 390 ~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
+++|++|++++|++++..|.++..+++|++|+|++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999988899999999999999999999976667789999999999999999999884
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.5e-42 Score=366.99 Aligned_cols=415 Identities=20% Similarity=0.182 Sum_probs=324.2
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|.++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEE
Confidence 68999999999999888889999999999999999999988999999999999999999998 78854 899999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCC--cEEEccCCcC--cCCCcHHHhhcCC-CCCEEEcc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNL--KFLDLSSNKL--VGNFPTWLMQNNT-NLEVLRLS 158 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L--~~L~Ls~n~l--~~~~p~~~~~~l~-~L~~L~L~ 158 (557)
+++|.+.+...+..+..+++|++|++++|.+... .+..+++| ++|++++|.+ ++..|..+. .++ ..-.++++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~-~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQ-IPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEE-ECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccccc-ccCcceEEEEec
Confidence 9999987633334678899999999999999542 34555566 9999999999 777776553 332 11134555
Q ss_pred CccccCcccC-CcccCCCccEEECcCC----------------------------cCcCCCchhHh--hhccCCcEEeCC
Q 042089 159 NNSFSGILQL-PKVKHDFLRHLDISNN----------------------------NLIGTLPQNMG--TVLQKLMLIDIS 207 (557)
Q Consensus 159 ~n~l~~~~~~-~~~~~~~L~~L~L~~n----------------------------~l~~~~~~~~~--~~l~~L~~L~L~ 207 (557)
.|.+.+.... ....+++|+.+++++| .+.+.....+. ...++|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 5555543111 1124445555555554 33221111111 012478888888
Q ss_pred CCcCcccCCccc-----cCCCCCcEEEcCCCeeeeecCcccccC---CCCCcEEeccCCccccccCccccCcccccceec
Q 042089 208 KNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGDLSATSVNG---CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279 (557)
Q Consensus 208 ~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (557)
+|.++|.+|..+ .+++.|+.+++..+.+ .+|...... ..+|++|++++|.+.... ....+++|++|++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 888888888776 6666666666666655 444322211 257999999999885422 1267899999999
Q ss_pred ccccccccccccccCCCCCcEEEccCCcccC--ccCccccCCCCCcEEEcCCCcCCCCcch-hhccCCCCcEEEccCccc
Q 042089 280 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSKNHLEGNIPV-QINNFRQLEILYLSENRL 356 (557)
Q Consensus 280 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l 356 (557)
++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999999899999999999999999999997 4567899999999999999999986665 478899999999999999
Q ss_pred ccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCcc-ccCCCCccEEEcCCCcccccCC
Q 042089 357 FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ-INKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 357 ~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~ip 432 (557)
++.+|.... ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus 441 ~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 441 TGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Ccchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 987766543 79999999999999 78888889999999999999998 56665 8999999999999999997654
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-39 Score=355.39 Aligned_cols=443 Identities=20% Similarity=0.143 Sum_probs=312.8
Q ss_pred EEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCc
Q 042089 8 ELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87 (557)
Q Consensus 8 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~ 87 (557)
+.+=++-+++ .+|..+. +.+++|||++|++++..|..|.++++|++|+|++|+|+ .+|+.+|.++++|++|++++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence 3444555565 5787665 58999999999999887889999999999999999998 566678999999999999999
Q ss_pred cCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcC-CCcHHHhhcCCCCCEEEccCccccCc
Q 042089 88 SNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 88 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~ 165 (557)
.+.+ ++...+..+.+|++|++++|.+..+|. .++.+++|++|++++|++++ .+|..+ ..+++|++|++++|.+++.
T Consensus 111 ~l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 111 PIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEE
T ss_pred cCCC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-ccchhhhhhcccCcccccc
Confidence 8864 444567889999999999999977775 58999999999999999975 455554 5899999999999999886
Q ss_pred ccCCcccC----CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccC--------------------------
Q 042089 166 LQLPKVKH----DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNI-------------------------- 215 (557)
Q Consensus 166 ~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------------- 215 (557)
.+..+..+ .....++++.|.+.. ++..... ...++.+++.+|.....+
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccc-cCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 43333322 234578999998874 4443332 345667777665332110
Q ss_pred --------------------------------CccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 216 --------------------------------PYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 216 --------------------------------p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
+..+..+.+++.+++.++.+.. ++. +..+..++.|++.+|.+.+.
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VKD--FSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CGG--GGSCCCCSEEEEESCEESSC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-ccc--cccchhhhhhhcccccccCc
Confidence 1112223445555555555542 221 23456777777777766543
Q ss_pred cCc-------------------cccCcccccceecccccccc--cccccccCCCCCcEEEccCCcccCccCccccCCCCC
Q 042089 264 IFP-------------------TYMNLTQLRGLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL 322 (557)
Q Consensus 264 ~~~-------------------~~~~l~~L~~L~L~~n~~~~--~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L 322 (557)
.+. ....+++|+.++++.|.+.. ..+..+....+|+.++++.+.... ++..+..++.|
T Consensus 344 ~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 344 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 221 12234556666666665532 233444455566666666665543 34455667777
Q ss_pred cEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcc-cccchhhhhcCCCCcEEeCC
Q 042089 323 DVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNAL-SGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 323 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l-~~~~p~~l~~~~~L~~L~L~ 399 (557)
+.+++..++.....+ ..+..+++++.++++.|.+.+..+... .++.+++|++++|++ .+.+|..+..+++|++|+++
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 777777766554433 456777788888888888877666555 677888888888874 34466777788888888888
Q ss_pred CCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 400 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
+|++++..|.+++.+++|++|+|++|++++..|..+..+++|++||+++|++++..|..+.++
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 888887778888888888888888888887777778888888888888888887777766543
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-38 Score=334.01 Aligned_cols=365 Identities=21% Similarity=0.241 Sum_probs=272.8
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccC-chhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|+|++|.+++..| ..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence 57999999999999988999999999999999999998766 5679999999999999999996666 468999999999
Q ss_pred EecCccCcccccC-CCCCCCCcccEEECCCCCCCCc-Chh-hhCCCCCcEEEccCCcCcCCCcHHHhhcC--CCCCEEEc
Q 042089 83 RLLKVSNNLRFKT-ENWIPTFQLKVLQLPNCSLKVI-PSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNN--TNLEVLRL 157 (557)
Q Consensus 83 ~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~i-p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L 157 (557)
++++|.+.+..+. ..+..+++|++|++++|.+..+ |.. +..+++|++|++++|++++..|..+. .+ .+|+.|++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-NFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG-GGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh-cccccccccccc
Confidence 9999998765433 3467788999999999999554 654 78899999999999999877776553 44 67889999
Q ss_pred cCccccCcccCCc--------ccCCCccEEECcCCcCcCCCchhHhhh--ccCCcEEeCCCCcCcccCCccccCCCCCcE
Q 042089 158 SNNSFSGILQLPK--------VKHDFLRHLDISNNNLIGTLPQNMGTV--LQKLMLIDISKNNFEGNIPYSIGEMKELFL 227 (557)
Q Consensus 158 ~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 227 (557)
++|.+.+...... ..+++|++|++++|.+++..|..++.. .++|+.|++++|...+....
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 257 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------- 257 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----------
Confidence 9998887643322 245678888888888887777776542 26788888888765542110
Q ss_pred EEcCCCeeeeecCccc-ccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCC
Q 042089 228 LDLSRNKFSGDLSATS-VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 306 (557)
Q Consensus 228 L~L~~n~l~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n 306 (557)
.+.+.+..+..+ ...+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 258 ----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 258 ----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 111110000000 012356777777777777777777777777777777777777666777777777777777777
Q ss_pred cccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccch
Q 042089 307 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIP 384 (557)
Q Consensus 307 ~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p 384 (557)
.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+ .+++|++|++++|.+++..|
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777767777777777777777777777777777777777777777777776544443 67777777777777776665
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.6e-38 Score=326.96 Aligned_cols=357 Identities=20% Similarity=0.233 Sum_probs=302.5
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++++++|++|++++|.+++ +| ++++++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCcCCE
Confidence 368999999999999974 5 799999999999999999974 4 8999999999999999996 45 789999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
|++++|.+.+. + +..+++|++|++++|.+..++ ++.+++|++|++++|+..+.++ +..+++|++|++++|.
T Consensus 111 L~L~~N~l~~l-~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTKL-D---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSCC-C---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred EECCCCcCCee-c---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 99999998763 3 678899999999999997776 8899999999999997776774 3589999999999999
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCc
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 241 (557)
+++. ++..+++|+.|++++|++++. + +. .+++|+.|++++|++++ +| ++.+++|+.|++++|++++ ++
T Consensus 182 l~~l---~l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~- 249 (457)
T 3bz5_A 182 ITEL---DVSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD- 249 (457)
T ss_dssp CCCC---CCTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC-
T ss_pred ccee---ccccCCCCCEEECcCCcCCee-c--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC-
Confidence 9984 477889999999999999864 3 43 58999999999999997 66 8899999999999999985 34
Q ss_pred ccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCC
Q 042089 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321 (557)
Q Consensus 242 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~ 321 (557)
...+++|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ....
T Consensus 250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 246789999998765 56788999999888887 46789999999999998888885 3455
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N 401 (557)
|+.|++++| ++|++|++++|++++. + +..+++|+.|++++|++++ + +.|..|++++|
T Consensus 309 L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l~~-l-------~~L~~L~l~~n 365 (457)
T 3bz5_A 309 ITELDLSQN-------------PKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHIQD-F-------SSVGKIPALNN 365 (457)
T ss_dssp CSCCCCTTC-------------TTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCCCB-C-------TTGGGSSGGGT
T ss_pred ceEechhhc-------------ccCCEEECCCCccccc-c-cccCCcCcEEECCCCCCCC-c-------cccccccccCC
Confidence 666665554 6899999999999883 3 5689999999999999986 2 45777889999
Q ss_pred cccccCCccccCCCCccEEEcCCCcccccCCccccC
Q 042089 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQ 437 (557)
Q Consensus 402 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~ 437 (557)
+++|. +.+..|+.+++++|+++|.+|..+..
T Consensus 366 ~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 366 NFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp SEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred cEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 99876 34567888999999999999987543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.9e-37 Score=323.23 Aligned_cols=345 Identities=23% Similarity=0.297 Sum_probs=257.2
Q ss_pred CCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccE
Q 042089 27 LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKV 106 (557)
Q Consensus 27 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 106 (557)
+++++.|+++++.+. .+| .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+.+..+ +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh---hcCCCCCCE
Confidence 456666666666665 344 35666666666666666663 332 5666666666666666554333 456677777
Q ss_pred EECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcC
Q 042089 107 LQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNL 186 (557)
Q Consensus 107 L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 186 (557)
|++++|.+..+|. +..+++|++|++++|.+++ ++. +.++++|++|+++ +.+.+. .++..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcC
Confidence 7777777766665 7778888888888888774 443 3578888888885 444444 3456778888888888887
Q ss_pred cCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCc
Q 042089 187 IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP 266 (557)
Q Consensus 187 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 266 (557)
++ ++. + ..+++|+.|++++|.+++..| ++.+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+..+
T Consensus 190 ~~-~~~-l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 190 SD-ISV-L-AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CC-CGG-G-GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CC-Chh-h-ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh-
Confidence 63 332 3 357888888888888876554 6778888888888888763 33 24578888888888888876544
Q ss_pred cccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCC
Q 042089 267 TYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 346 (557)
Q Consensus 267 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 346 (557)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 7788889999999988886544 7788899999999998887654 7788999999999999987766 7788999
Q ss_pred cEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccc
Q 042089 347 EILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG 405 (557)
Q Consensus 347 ~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~ 405 (557)
+.|++++|++++. +.+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 334 ~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999988864 666688999999999999988777 8889999999999999876
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.8e-37 Score=321.91 Aligned_cols=346 Identities=22% Similarity=0.232 Sum_probs=201.9
Q ss_pred CCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcE
Q 042089 50 NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKF 129 (557)
Q Consensus 50 ~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~ 129 (557)
.++++++|+++++.+. .+|. +..+++|++|++++|.+.+..+ +..+.+|++|++++|.+..++. +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 3567888888888876 4552 6677777777777776654432 4566677777777777755555 666777777
Q ss_pred EEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCC
Q 042089 130 LDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209 (557)
Q Consensus 130 L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 209 (557)
|++++|++++ ++. +.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.+. +. + ..+++|+.|++++|
T Consensus 117 L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~-~~-~-~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 117 LTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL-KP-L-ANLTTLERLDISSN 187 (466)
T ss_dssp EECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-GG-G-TTCTTCCEEECCSS
T ss_pred EECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-hh-h-ccCCCCCEEECcCC
Confidence 7777777663 333 34667777777777766654 234456666666664 333322 11 2 23555666666665
Q ss_pred cCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccccc
Q 042089 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK 289 (557)
Q Consensus 210 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 289 (557)
.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ .
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~------------------------~-- 236 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD------------------------I-- 236 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC------------------------C--
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc------------------------c--
Confidence 55432 234555555555555555543222 2334555555555554433 1
Q ss_pred ccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCc
Q 042089 290 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSI 369 (557)
Q Consensus 290 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L 369 (557)
..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 311 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNL 311 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTC
T ss_pred hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCC
Confidence 134445555555555555554433 4555556666666655554333 5555666666666666554322 3456666
Q ss_pred cEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCC
Q 042089 370 MHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 370 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
++|++++|++++..| +..+++|++|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 666666666665444 55666666666666666543 356666666666666666666555 566666667777776
Q ss_pred cCcC
Q 042089 450 KLNG 453 (557)
Q Consensus 450 ~l~g 453 (557)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6665
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=308.56 Aligned_cols=321 Identities=20% Similarity=0.156 Sum_probs=228.9
Q ss_pred cEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCC
Q 042089 105 KVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNN 184 (557)
Q Consensus 105 ~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 184 (557)
+.++.+++.+..+|..+. +++++|++++|++++..|..+ .++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 567888888888887553 578889998888885555544 57888888888888888765555667788888888888
Q ss_pred cCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCcccccc
Q 042089 185 NLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHI 264 (557)
Q Consensus 185 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 264 (557)
.++ .+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccC
Confidence 877 4555443457788888888888877777777788888888888887764333 34456777888888777777655
Q ss_pred CccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCC
Q 042089 265 FPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 344 (557)
Q Consensus 265 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 344 (557)
+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 55667777777777777777766666777777777777777777666666666666777777777777755545667777
Q ss_pred CCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 345 QLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
+|+.|++++|.+++..+..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|+|+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 77777777777765444433 66677777777777776666666677777777777777765555566666777777777
Q ss_pred CCccccc
Q 042089 424 GNYLQGE 430 (557)
Q Consensus 424 ~N~l~g~ 430 (557)
+|.++..
T Consensus 329 ~N~l~c~ 335 (477)
T 2id5_A 329 SNPLACD 335 (477)
T ss_dssp SSCEECS
T ss_pred CCCccCc
Confidence 7766643
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=308.13 Aligned_cols=321 Identities=20% Similarity=0.164 Sum_probs=187.1
Q ss_pred cEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCC
Q 042089 128 KFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDIS 207 (557)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 207 (557)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECC
Confidence 45555555555 455432 24566666666666655434445566666666666666544444443 35666666666
Q ss_pred CCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccc
Q 042089 208 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287 (557)
Q Consensus 208 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 287 (557)
+|.+++..+..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 666654444445666666666666666653333 2334566666666666666655555566666666666666666655
Q ss_pred ccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc-ccCC
Q 042089 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS-FLNL 366 (557)
Q Consensus 288 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~ 366 (557)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|...+.+|.......+|+.|++++|.+++..+. +..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 445555666666666666666655555566666666666666665555555555555666666666666532222 2255
Q ss_pred CCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEc
Q 042089 367 SSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446 (557)
Q Consensus 367 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldl 446 (557)
++|++|++++|++++..+..+..+++|+.|++++|++++..|.++..+++|+.|+|++|++++..+..+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 66666666666666555555666666666666666666655666666666666666666666544455566666666666
Q ss_pred cCCcCcCC
Q 042089 447 SHNKLNGS 454 (557)
Q Consensus 447 s~N~l~g~ 454 (557)
++|++++.
T Consensus 328 ~~N~l~c~ 335 (477)
T 2id5_A 328 DSNPLACD 335 (477)
T ss_dssp CSSCEECS
T ss_pred cCCCccCc
Confidence 66666543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-32 Score=277.92 Aligned_cols=305 Identities=20% Similarity=0.287 Sum_probs=176.4
Q ss_pred CCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEE
Q 042089 100 PTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 179 (557)
.+.+|++|+++++.+..+|. +..+++|++|++++|+++ .++. +.++++|++|++++|.++.. ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 34456666666666655553 556666666666666666 3333 34666666666666665553 223455556666
Q ss_pred ECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 180 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
++++|.+++ ++. + ..+++|+.|++++|.....++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.
T Consensus 116 ~l~~n~i~~-~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNISD-ISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCCC-CGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCSEEECTTSC
T ss_pred ECcCCcccC-chh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh--hccCCCCCEEEccCCc
Confidence 666665552 222 2 235556666665554433332 255555555555555555422 11 2344455555555544
Q ss_pred cccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchh
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 339 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~ 339 (557)
+ ++..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 189 l------------------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 I------------------------EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp C------------------------CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred c------------------------ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 4 32211 3444555555555555554333 4455556666666665554333
Q ss_pred hccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccE
Q 042089 340 INNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419 (557)
Q Consensus 340 l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 419 (557)
+..+++|++|++++|.+++ ++.+..+++|++|++++|++++. +.+..+++|++|++++|++++..|.+++.+++|++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 5566666666666666654 34444666777777777776643 34667777777777777777777777777777888
Q ss_pred EEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 420 L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
|++++|++++..| +..+++|+.||+++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888887776555 677788888888888765
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.5e-33 Score=280.25 Aligned_cols=286 Identities=21% Similarity=0.274 Sum_probs=212.7
Q ss_pred CCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEE
Q 042089 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLL 228 (557)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 228 (557)
+++|++|+++++.+... ..+..+++|++|++++|.++ .++. + ..+++|++|++++|.++. ++ .+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~-~-~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT-DISP-L-SNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc-cchh-h-hcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence 34444444444444332 12334445555555555544 2222 2 235666666666666553 22 46666777777
Q ss_pred EcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcc
Q 042089 229 DLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 308 (557)
Q Consensus 229 ~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l 308 (557)
++++|.+. .++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 116 ~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 116 YLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred ECcCCccc-Cchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 77777665 2333 4566777777777775544433 36777888888888888775443 77889999999999999
Q ss_pred cCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhh
Q 042089 309 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 309 ~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
++..+ +..+++|+.+++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+.
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHh
Confidence 86544 7889999999999999997655 8899999999999999986544 66899999999999999863 4688
Q ss_pred cCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
.+++|++|++++|++++. .++..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 999999999999999764 468899999999999999999999999999999999999999998776
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.2e-34 Score=285.87 Aligned_cols=250 Identities=30% Similarity=0.437 Sum_probs=146.3
Q ss_pred CccEEECcCCcCcC--CCchhHhhhccCCcEEeCCC-CcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCc
Q 042089 175 FLRHLDISNNNLIG--TLPQNMGTVLQKLMLIDISK-NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLE 251 (557)
Q Consensus 175 ~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 251 (557)
+++.|++++|.+++ .+|..+. .+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------------- 116 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA------------- 116 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-------------
T ss_pred eEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-------------
Confidence 45555555555554 4454443 245555555552 555555555555555555555555555444
Q ss_pred EEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCC-CCcEEEcCCC
Q 042089 252 YLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS-YLDVLLMSKN 330 (557)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~l~~n 330 (557)
+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ .|++|++++|
T Consensus 117 ------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 117 ------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp ------------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred ------------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 444444444444455555544444455555555555555555555555555555554 5555555555
Q ss_pred cCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCc
Q 042089 331 HLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPH 409 (557)
Q Consensus 331 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~ 409 (557)
.+++.+|..+..++ |++|++++|.+++.+|..+ .+++|++|++++|++++.+|. +..+++|++|++++|++++.+|.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 55555555555554 5566666665555554443 556666666666666655444 56667777777777777777777
Q ss_pred cccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCc-CcC
Q 042089 410 QINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK-LNG 453 (557)
Q Consensus 410 ~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~-l~g 453 (557)
++..+++|++|+|++|+++|.+|.. ..+++|+.+++++|+ +.|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 7777777777777777777777765 677777777787777 554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.6e-33 Score=283.44 Aligned_cols=309 Identities=21% Similarity=0.191 Sum_probs=178.9
Q ss_pred CCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEE
Q 042089 101 TFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179 (557)
Q Consensus 101 ~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 179 (557)
+.++++|+++++.++.+|.. +..+++|++|++++|.+++..+..+ .++++|++|++++|.+++..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34666666666666666654 4556666666666666663333332 466666666666666665543334456666666
Q ss_pred ECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 180 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
++++|.++ .+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++ ...+++|+++++++|.
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSC
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeeccccc
Confidence 66666665 4454443345666666666666665555556666666666666666552 22 2234555555555555
Q ss_pred cccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchh
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 339 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~ 339 (557)
+.+. .. .++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..
T Consensus 198 l~~~-----~~------------------------~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 198 LSTL-----AI------------------------PIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CSEE-----EC------------------------CSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GG
T ss_pred cccc-----CC------------------------CCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HH
Confidence 4321 11 23444455554444432 111 124455555555555532 34
Q ss_pred hccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCcc
Q 042089 340 INNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELR 418 (557)
Q Consensus 340 l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 418 (557)
+..+++|+.|++++|.+++..|..+ .+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|.+++.+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 5555555666666655555444333 55666666666666653 4545556677777777777775 5666677777788
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 419 ~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
.|++++|++++. | +..+++|+.|++++|++++.
T Consensus 322 ~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 322 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 888888877743 3 56778888888888888764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=280.66 Aligned_cols=312 Identities=22% Similarity=0.205 Sum_probs=235.6
Q ss_pred CCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCC
Q 042089 75 NHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLE 153 (557)
Q Consensus 75 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 153 (557)
.++++++|++.++.+. .+|...+..+++|++|++++|.+..++. .+..+++|++|++++|.+++..|..+ .++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCC
Confidence 4689999999998765 4555456778899999999999977664 88999999999999999996555544 6899999
Q ss_pred EEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCC
Q 042089 154 VLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233 (557)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 233 (557)
+|++++|.++......+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+++. .+..+++|+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 999999999976444456899999999999999966565564 589999999999999854 3677899999999999
Q ss_pred eeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccC
Q 042089 234 KFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP 313 (557)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 313 (557)
.+.+ + ...++|++|++++|.+... +.. ..+ +|++|++++|.+++.
T Consensus 197 ~l~~-~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~------------------------~L~~L~l~~n~l~~~-- 241 (390)
T 3o6n_A 197 LLST-L-----AIPIAVEELDASHNSINVV-RGP--VNV------------------------ELTILKLQHNNLTDT-- 241 (390)
T ss_dssp CCSE-E-----ECCSSCSEEECCSSCCCEE-ECC--CCS------------------------SCCEEECCSSCCCCC--
T ss_pred cccc-c-----CCCCcceEEECCCCeeeec-ccc--ccc------------------------cccEEECCCCCCccc--
Confidence 8873 2 2346789999999887643 211 123 455555555555442
Q ss_pred ccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCC
Q 042089 314 CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTEL 393 (557)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L 393 (557)
.++..+++|++|++++|.+++..|..+..+++|+.|++++|++++.......+++|++|++++|+++ .+|..+..+++|
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence 3455556666666666666665666666666777777777766653333336778888888888887 567778888899
Q ss_pred cEEeCCCCcccccCCccccCCCCccEEEcCCCcccccC
Q 042089 394 LTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 394 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
++|++++|++++. | +..+++|+.|++++|++++.-
T Consensus 321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 9999999998644 3 677889999999999988653
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6e-36 Score=313.97 Aligned_cols=383 Identities=19% Similarity=0.095 Sum_probs=215.3
Q ss_pred CCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEE
Q 042089 52 TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLD 131 (557)
Q Consensus 52 ~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~ 131 (557)
++|++|+|++|.++.......+..+++|++|++++|.+..... ..++..+..+++|++|+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~ 62 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence 4677888888877644333335556666666666554432100 13556667777777777
Q ss_pred ccCCcCcCCCcHHHhhcCC----CCCEEEccCccccCcc----cCCcccCCCccEEECcCCcCcCCCchhHhhh----cc
Q 042089 132 LSSNKLVGNFPTWLMQNNT----NLEVLRLSNNSFSGIL----QLPKVKHDFLRHLDISNNNLIGTLPQNMGTV----LQ 199 (557)
Q Consensus 132 Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----l~ 199 (557)
+++|.+++..+..++..++ +|++|++++|.++... +..+..+++|++|++++|.+++..+..++.. .+
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 7777776555555555555 5777777777766421 1223466677777777777665444444332 23
Q ss_pred CCcEEeCCCCcCccc----CCccccCCCCCcEEEcCCCeeeeecCccccc----CCCCCcEEeccCCccccc----cCcc
Q 042089 200 KLMLIDISKNNFEGN----IPYSIGEMKELFLLDLSRNKFSGDLSATSVN----GCASLEYLDVSENNFYGH----IFPT 267 (557)
Q Consensus 200 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~----~~~~ 267 (557)
+|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 577777777777653 2445556677777777777765432222221 244677777777766553 3444
Q ss_pred ccCcccccceecccccccccc-----cccccCCCCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 268 YMNLTQLRGLYLKNNHFTGKI-----KAGLLNSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~-----~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 555666666666666655432 12222456666666666666543 455555566666666666666544333
Q ss_pred hhccC-----CCCcEEEccCcccccc----ccccc-CCCCccEEEccCCcccccchhhhhc-----CCCCcEEeCCCCcc
Q 042089 339 QINNF-----RQLEILYLSENRLFGS----IASFL-NLSSIMHLYLQKNALSGQIPSTLLR-----STELLTLDLRDNKF 403 (557)
Q Consensus 339 ~l~~l-----~~L~~L~L~~n~l~~~----i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~L~~N~l 403 (557)
.+... ++|++|++++|.+++. ++... .+++|++|++++|++++..+..+.. +++|++|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 33322 4666666666665543 22222 4556666666666655444433332 45566666666666
Q ss_pred cc----cCCccccCCCCccEEEcCCCcccccCCccc-----cCCCCCCEEEccCCcCcCC
Q 042089 404 FG----RIPHQINKHSELRVLLLRGNYLQGEIPIAL-----CQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 404 ~~----~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l-----~~l~~L~~Ldls~N~l~g~ 454 (557)
++ .+|.++..+++|++|++++|++++.....+ ....+|+.|++.++.+...
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 54 455555556666666666666554321111 1123455555555555433
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-32 Score=295.08 Aligned_cols=310 Identities=21% Similarity=0.199 Sum_probs=191.0
Q ss_pred CCCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccE
Q 042089 100 PTFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 178 (557)
.+..++.+++++|.++.+|.. +..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+..+..+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 345677888888877777654 5667788888888888775544444 47778888888888777765444567777888
Q ss_pred EECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCC
Q 042089 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSEN 258 (557)
Q Consensus 179 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n 258 (557)
|++++|.++ .+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+++ ++ ...+++|+.|++++|
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSS
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccC
Confidence 888877777 5555544457777777777777777777777777777777777777763 32 234667777777777
Q ss_pred ccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 259 NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
.+.+. ...++|+.|++++|.++...+ .+ .++|+.|++++|.+++ +.++..+++|+.|++++|.+++..|.
T Consensus 203 ~l~~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLSTL-----AIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSEE-----ECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----cCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 66542 233466667777766653322 22 2456666666666665 24555666666666666666666666
Q ss_pred hhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCcc
Q 042089 339 QINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELR 418 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 418 (557)
.+..+++|+.|++++|.+++..+....+++|++|+|++|.++ .+|..+..+++|++|++++|++++. | ++.+++|+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~ 348 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 348 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCC
Confidence 666666666666666665542222224555555555555554 3444445555555555555555322 1 33344444
Q ss_pred EEEcCCCcccc
Q 042089 419 VLLLRGNYLQG 429 (557)
Q Consensus 419 ~L~L~~N~l~g 429 (557)
.|++++|.+++
T Consensus 349 ~L~l~~N~~~~ 359 (597)
T 3oja_B 349 NLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCEEH
T ss_pred EEEeeCCCCCC
Confidence 44444444443
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.2e-35 Score=311.55 Aligned_cols=401 Identities=21% Similarity=0.159 Sum_probs=240.7
Q ss_pred CCCcCEEeCCCCCCcccCC-ccCCCCCCCCEEECCCCcCCc----cCchhccCCCCCCEEeCcCcccCcccChhhhcCCC
Q 042089 3 LKNLTELDLRENNLEGQLP-WRLSDLTGLKVFDISSNQLSG----NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHS 77 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~ 77 (557)
.++|++|+|++|+++.... ..+..+++|++|++++|.+++ .++..+..+++|++|+|++|.+.+..+..+...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3567888888888765433 236777888888888888774 34666777788888888888776544433333333
Q ss_pred CCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCC-----CcChhhhCCCCCcEEEccCCcCcCCCcHHHhh----c
Q 042089 78 NLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK-----VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQ----N 148 (557)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~----~ 148 (557)
. ...+|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. .
T Consensus 82 ~---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 140 (461)
T 1z7x_W 82 T---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140 (461)
T ss_dssp S---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred h---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcC
Confidence 0 0114555666666553 45667777788888888888776544444332 2
Q ss_pred CCCCCEEEccCccccCccc----CCcccCCCccEEECcCCcCcCCCchhHhhh----ccCCcEEeCCCCcCccc----CC
Q 042089 149 NTNLEVLRLSNNSFSGILQ----LPKVKHDFLRHLDISNNNLIGTLPQNMGTV----LQKLMLIDISKNNFEGN----IP 216 (557)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~----~p 216 (557)
.++|++|++++|.+++... ..+..+++|++|++++|.+++..+..++.. .++|+.|++++|.+++. ++
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 4467777777776665321 112245667777777776654433333322 33677777777766642 35
Q ss_pred ccccCCCCCcEEEcCCCeeeeec----CcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccc
Q 042089 217 YSIGEMKELFLLDLSRNKFSGDL----SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGL 292 (557)
Q Consensus 217 ~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l 292 (557)
..+..+++|++|++++|.+.+.. ....+..+++|++|++++|.+++.... .++..+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l 280 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVL 280 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHH
Confidence 55556666666666666654321 111222344555555555544332000 134444
Q ss_pred cCCCCCcEEEccCCcccCccCccccC-----CCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccccccccc
Q 042089 293 LNSHGLVVLDISNNLLSGHIPCWIGN-----FSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLFGSIASF 363 (557)
Q Consensus 293 ~~~~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~i~~~ 363 (557)
..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 44556666666666655433333222 24677777777776654 4566667788888888888776543221
Q ss_pred c------CCCCccEEEccCCcccc----cchhhhhcCCCCcEEeCCCCcccccCCcccc-----CCCCccEEEcCCCccc
Q 042089 364 L------NLSSIMHLYLQKNALSG----QIPSTLLRSTELLTLDLRDNKFFGRIPHQIN-----KHSELRVLLLRGNYLQ 428 (557)
Q Consensus 364 ~------~~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~ 428 (557)
. ..++|++|++++|++++ .+|..+..+++|++|++++|++++.....+. ...+|+.|.+.++.+.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 1 16788889999998886 6888888899999999999998765333222 2346888888887776
Q ss_pred ccCCccc----cCCCCCCEE
Q 042089 429 GEIPIAL----CQLQKLRIL 444 (557)
Q Consensus 429 g~ip~~l----~~l~~L~~L 444 (557)
...++.+ ...|+|+++
T Consensus 441 ~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 441 EEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHhccCCCcEee
Confidence 5544433 235566554
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-33 Score=276.95 Aligned_cols=253 Identities=26% Similarity=0.369 Sum_probs=199.0
Q ss_pred CCCCEEEccCccccC--cccCCcccCCCccEEECcC-CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCc
Q 042089 150 TNLEVLRLSNNSFSG--ILQLPKVKHDFLRHLDISN-NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELF 226 (557)
Q Consensus 150 ~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 226 (557)
.+++.|++++|.+++ ..+..+..+++|++|++++ |.+++.+|..++ .+++|++|++++|.+++.+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999998 5445567899999999995 999999999986 599999999999999999999999999999
Q ss_pred EEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCC
Q 042089 227 LLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 306 (557)
Q Consensus 227 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n 306 (557)
+|++++|.+.+.+|..+ ..+++|++|++++|.+++.+|..+..++ +.|++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----------------------~~L~~L~L~~N 184 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFS-----------------------KLFTSMTISRN 184 (313)
T ss_dssp EEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCC-----------------------TTCCEEECCSS
T ss_pred EEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhh-----------------------hcCcEEECcCC
Confidence 99999999987666554 4566677766666666655555444443 15555555555
Q ss_pred cccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhh
Q 042089 307 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPST 386 (557)
Q Consensus 307 ~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~ 386 (557)
.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|.+..+++|++|++++|++++.+|..
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence 55555555555554 66666666666666666667777777777777777777776667788888888888888889999
Q ss_pred hhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCc-ccc
Q 042089 387 LLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY-LQG 429 (557)
Q Consensus 387 l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~g 429 (557)
+..+++|++|++++|+++|.+|.. +.+++|+.+++++|+ +.|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999999999999998887 788899999999997 554
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-32 Score=291.94 Aligned_cols=312 Identities=19% Similarity=0.182 Sum_probs=267.4
Q ss_pred CCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCc
Q 042089 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLM 202 (557)
Q Consensus 123 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 202 (557)
.+.+++.+++++|.+. .+|..++.++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++ .+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCC
Confidence 4578999999999988 67777777999999999999999988655677899999999999999976565554 589999
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (557)
+|++++|.+++..+..++++++|++|++++|.+.+. ++..+..+++|++|++++|.+++. .+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 999999999966666679999999999999999854 444457899999999999999864 3566889999999999
Q ss_pred cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc
Q 042089 283 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362 (557)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 362 (557)
.+++. ....+|+.|++++|.++...+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+++.+|.
T Consensus 203 ~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 88743 34568999999999987554332 3689999999999997 47789999999999999999998776
Q ss_pred cc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCC
Q 042089 363 FL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKL 441 (557)
Q Consensus 363 ~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L 441 (557)
.+ .+++|++|+|++|++++ +|..+..+++|++|++++|+++ .+|.+++.+++|+.|+|++|++++. | +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 55 89999999999999996 6777788999999999999997 7888899999999999999999854 3 6778999
Q ss_pred CEEEccCCcCcCCc
Q 042089 442 RILDLSHNKLNGSI 455 (557)
Q Consensus 442 ~~Ldls~N~l~g~i 455 (557)
+.|++++|++++..
T Consensus 348 ~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 348 KNLTLSHNDWDCNS 361 (597)
T ss_dssp SEEECCSSCEEHHH
T ss_pred CEEEeeCCCCCChh
Confidence 99999999998763
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.7e-31 Score=265.17 Aligned_cols=266 Identities=19% Similarity=0.181 Sum_probs=156.7
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
+|++|++++|.+++..|..+. .+++|++|++++|.+++..|..++++++|++|++++|.+. .+|...+ ++|++|+
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~ 129 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELR 129 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEE
T ss_pred CCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEE
Confidence 444444444444422232332 3455555555555555444555555555555555555554 4444332 4555555
Q ss_pred ccCCccccccCccccCcccccceeccccccc--ccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcC
Q 042089 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l 332 (557)
+++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 5555555444444555555555555555553 2344444444 56666666666554 343332 4666666666666
Q ss_pred CCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l 411 (557)
++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 66666666666677777777776666554333 6677777777777776 677777778888888888888876655555
Q ss_pred cC------CCCccEEEcCCCccc--ccCCccccCCCCCCEEEccCCc
Q 042089 412 NK------HSELRVLLLRGNYLQ--GEIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 412 ~~------l~~L~~L~L~~N~l~--g~ip~~l~~l~~L~~Ldls~N~ 450 (557)
.. .+.|+.|++++|.+. +..|.++..+++|+.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 43 356788888888876 5566777888888888888774
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.5e-30 Score=257.82 Aligned_cols=267 Identities=19% Similarity=0.171 Sum_probs=159.1
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
.+++|++++|.+++..+..+. .+++|++|++++|.+++..|..++++++|++|++++|.++ .+|...+ ++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEE
T ss_pred CCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEE
Confidence 444445555544432222332 3555555555555555555555555566666666655554 4444332 4566666
Q ss_pred ccCCccccccCccccCcccccceecccccccc--cccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcC
Q 042089 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l 332 (557)
+++|.+.+..+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 66665555444445555666666666665542 445556666666666666666653 344332 5667777777776
Q ss_pred CCCcchhhccCCCCcEEEccCcccccccccc-cCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASF-LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~-~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l 411 (557)
++..|..+..+++|++|++++|.+++..+.. ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 6666666667777777777777766654433 36667777777777776 666677777777777777777766555555
Q ss_pred cC------CCCccEEEcCCCcccc--cCCccccCCCCCCEEEccCCc
Q 042089 412 NK------HSELRVLLLRGNYLQG--EIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 412 ~~------l~~L~~L~L~~N~l~g--~ip~~l~~l~~L~~Ldls~N~ 450 (557)
.. .+.++.|++++|.+.. ..|..+..++.++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 32 3567778888887753 445667777788888887774
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.1e-33 Score=304.04 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=37.0
Q ss_pred CCCccEEEccCCc--ccccchhhhhc-CCCCcEEeCCCCcccc-cCCccccCCCCccEEEcCCCcccccC-CccccCCCC
Q 042089 366 LSSIMHLYLQKNA--LSGQIPSTLLR-STELLTLDLRDNKFFG-RIPHQINKHSELRVLLLRGNYLQGEI-PIALCQLQK 440 (557)
Q Consensus 366 ~~~L~~L~L~~n~--l~~~~p~~l~~-~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~ 440 (557)
+++|++|++++|. +++..+..+.. +++|++|++++|++++ .++..+..+++|++|++++|++++.. +.....+++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 4444444444322 33333333322 4444455554444443 22233344444555555544444332 222234444
Q ss_pred CCEEEccCCcCcC
Q 042089 441 LRILDLSHNKLNG 453 (557)
Q Consensus 441 L~~Ldls~N~l~g 453 (557)
|+.|++++|++++
T Consensus 515 L~~L~ls~n~it~ 527 (592)
T 3ogk_B 515 LRYLWVQGYRASM 527 (592)
T ss_dssp CCEEEEESCBCCT
T ss_pred cCeeECcCCcCCH
Confidence 5555555554443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.1e-30 Score=259.59 Aligned_cols=289 Identities=20% Similarity=0.242 Sum_probs=158.6
Q ss_pred cccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECc
Q 042089 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 182 (557)
++++++++++.+..+|..+. +++++|++++|.+++..|..+ .++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 67777777777777776543 567777777777764444333 467777777777777666543445566667777777
Q ss_pred CCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeee-ecCcccccCCCCCcEEeccCCccc
Q 042089 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-DLSATSVNGCASLEYLDVSENNFY 261 (557)
Q Consensus 183 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~ 261 (557)
+|.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+....+..+ +|++|++++|.++
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 66666 5555442 566666666666665444456666666666666666542 1222222333 5555555555554
Q ss_pred cccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc
Q 042089 262 GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341 (557)
Q Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 341 (557)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++|+.|++++|+++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 3 232222 34555555555555444444444455555555555554444444444444455555444444 3444444
Q ss_pred cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhc------CCCCcEEeCCCCccc--ccCCccccC
Q 042089 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLR------STELLTLDLRDNKFF--GRIPHQINK 413 (557)
Q Consensus 342 ~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------~~~L~~L~L~~N~l~--~~~p~~l~~ 413 (557)
.+ ++|++|++++|++++..+..+.. ...|+.|++++|++. +..|.++..
T Consensus 262 ~l-----------------------~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 262 DL-----------------------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp GC-----------------------TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred cC-----------------------ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 44 45555555555554333333332 245667777777665 445566666
Q ss_pred CCCccEEEcCCCc
Q 042089 414 HSELRVLLLRGNY 426 (557)
Q Consensus 414 l~~L~~L~L~~N~ 426 (557)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7777777776664
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.6e-32 Score=297.08 Aligned_cols=393 Identities=15% Similarity=0.089 Sum_probs=171.9
Q ss_pred CCCCCCEEECCCCcCCccCchhccC-CCC-CCEEeCcCcc-cCcccChhhhcCCCCCcEEEecCccCccccc---CCCCC
Q 042089 26 DLTGLKVFDISSNQLSGNLPSVIAN-LTS-LEYLVLSDNN-FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFK---TENWI 99 (557)
Q Consensus 26 ~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~-L~~L~Ls~n~-l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~ 99 (557)
.+++|++|+|++|.+++..+..+.. +++ |++|+|++|. ++...-.....++++|++|++++|.+.+... .....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555555444444443 222 5555555544 1100001122345555555555554322100 00112
Q ss_pred CCCcccEEECCCCCCC-----CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcccc---CcccCCcc
Q 042089 100 PTFQLKVLQLPNCSLK-----VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS---GILQLPKV 171 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~-----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~ 171 (557)
.+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +|..+ .++++|+.|+++..... +.......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH-hhhhHHHhhcccccccccchHHHHHHhh
Confidence 3445555555555543 223334445555555555555442 33332 34555555555432111 00011122
Q ss_pred cCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCc
Q 042089 172 KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLE 251 (557)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 251 (557)
.+++|+.++++++ . .+.+|..+..+++|++|++++|.+++......+..+++|+
T Consensus 268 ~~~~L~~L~l~~~-------------------------~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-------------------------G-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CCTTCCEEEETTC-------------------------C-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred ccccccccCcccc-------------------------c-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 3444444444443 2 1233444444445555555544443322222233444555
Q ss_pred EEeccCCccccccCccccCcccccceeccc-----------cccccc-ccccccCCCCCcEEEccCCcccCccCccccC-
Q 042089 252 YLDVSENNFYGHIFPTYMNLTQLRGLYLKN-----------NHFTGK-IKAGLLNSHGLVVLDISNNLLSGHIPCWIGN- 318 (557)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~- 318 (557)
+|+++++...+.++.....+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 555542211111222223344455555552 233322 1111233455555555555555544444443
Q ss_pred CCCCcEEEcC----CCcCCCC-----cchhhccCCCCcEEEccCcc--ccccccccc--CCCCccEEEccCCcccc-cch
Q 042089 319 FSYLDVLLMS----KNHLEGN-----IPVQINNFRQLEILYLSENR--LFGSIASFL--NLSSIMHLYLQKNALSG-QIP 384 (557)
Q Consensus 319 ~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~i~~~~--~~~~L~~L~L~~n~l~~-~~p 384 (557)
+++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+... .+++|++|++++|++++ .++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 5555555553 3444442 33334555666666665432 333222211 35556666666666554 234
Q ss_pred hhhhcCCCCcEEeCCCCcccccC-CccccCCCCccEEEcCCCcccccCCccc-cCCCCCCEEEc
Q 042089 385 STLLRSTELLTLDLRDNKFFGRI-PHQINKHSELRVLLLRGNYLQGEIPIAL-CQLQKLRILDL 446 (557)
Q Consensus 385 ~~l~~~~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~~l-~~l~~L~~Ldl 446 (557)
..+..+++|++|++++|++++.. +..+..+++|+.|+|++|++++.....+ ..++.+.+..+
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence 44455666666666666655442 2233445666666666666654432222 24454444333
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-29 Score=254.19 Aligned_cols=290 Identities=22% Similarity=0.248 Sum_probs=172.1
Q ss_pred cccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECc
Q 042089 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 182 (557)
++++++++++.+..+|..+. +++++|++++|++++..+.. +.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 78888888888888876543 57888888888888544433 3578888888888888777644455677777788887
Q ss_pred CCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeee-ecCcccccCCCCCcEEeccCCccc
Q 042089 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-DLSATSVNGCASLEYLDVSENNFY 261 (557)
Q Consensus 183 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~ 261 (557)
+|+++ .+|..++ ++|+.|++++|.+++..+..+.++++|++|++++|.+.. .+....+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 77776 5665542 567777777777776555566777777777777776642 122233445666666666666654
Q ss_pred cccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc
Q 042089 262 GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341 (557)
Q Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 341 (557)
. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3 332221 45555555555555444444555555555555555555444444444555555555555444 4444444
Q ss_pred cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhh------cCCCCcEEeCCCCcccc--cCCccccC
Q 042089 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLL------RSTELLTLDLRDNKFFG--RIPHQINK 413 (557)
Q Consensus 342 ~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~------~~~~L~~L~L~~N~l~~--~~p~~l~~ 413 (557)
.+++|++| ++++|++++..+..+. ..+.++.+++++|++.. ..|.++..
T Consensus 261 ~l~~L~~L-----------------------~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 261 DHKYIQVV-----------------------YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp TCSSCCEE-----------------------ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred cCCCcCEE-----------------------ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 44444444 4444444433333332 13556677777776642 34556666
Q ss_pred CCCccEEEcCCCc
Q 042089 414 HSELRVLLLRGNY 426 (557)
Q Consensus 414 l~~L~~L~L~~N~ 426 (557)
+..++.++|++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 7777777777764
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.1e-28 Score=242.17 Aligned_cols=251 Identities=19% Similarity=0.218 Sum_probs=173.6
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEecc
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS 256 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 256 (557)
+.++.+++.++ .+|..+ .+++++|++++|.++...+..+.++++|++|++++|.+...
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------ 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------ 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE------------------
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc------------------
Confidence 34555555554 445433 24555555555555532222345555555555555554311
Q ss_pred CCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccC-ccccCCCCCcEEEcCCCcCCCC
Q 042089 257 ENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 68 -----~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 68 -----GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp -----EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred -----cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 111233334455555555555554 344456666777777777777765544 4667777777777777777777
Q ss_pred cchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccC
Q 042089 336 IPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINK 413 (557)
Q Consensus 336 ~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~ 413 (557)
.+..+..+++|++|++++|.+++ .+|..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 77777777888888888888776 345444 7888888888888888877888889999999999999998877778888
Q ss_pred CCCccEEEcCCCcccccCCccccCCC-CCCEEEccCCcCcCCc
Q 042089 414 HSELRVLLLRGNYLQGEIPIALCQLQ-KLRILDLSHNKLNGSI 455 (557)
Q Consensus 414 l~~L~~L~L~~N~l~g~ip~~l~~l~-~L~~Ldls~N~l~g~i 455 (557)
+++|+.|++++|++++..|..+..++ +|+.|++++|++++..
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99999999999999999998898885 8999999999998764
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=253.15 Aligned_cols=274 Identities=20% Similarity=0.202 Sum_probs=163.3
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEecc
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS 256 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 256 (557)
...+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++ ++...+..+++|++|+++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECC
Confidence 33455555544 4454432 355555555555554444455555555555555555553 222233455555555555
Q ss_pred CCccccccCccccCcccccceeccccccccccc-ccccCCCCCcEEEccCC-cccCccCccccCCCCCcEEEcCCCcCCC
Q 042089 257 ENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK-AGLLNSHGLVVLDISNN-LLSGHIPCWIGNFSYLDVLLMSKNHLEG 334 (557)
Q Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~~~~L~~L~l~~n~l~~ 334 (557)
+|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+++..+..+.++++|++|++++|.+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 555554333334555556666666655553222 24555666666666665 3444445556666666666666666665
Q ss_pred CcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhh---hcCCCCcEEeCCCCcccc----c
Q 042089 335 NIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTL---LRSTELLTLDLRDNKFFG----R 406 (557)
Q Consensus 335 ~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~L~~N~l~~----~ 406 (557)
..|..+..+++|++|++++|.+....+... .+++|++|++++|++++..+..+ ..++.++.++++++.+++ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 556666666666666666666543222222 45666666666666665433322 235667777777777765 4
Q ss_pred CCccccCCCCccEEEcCCCcccccCCcc-ccCCCCCCEEEccCCcCcCCcC
Q 042089 407 IPHQINKHSELRVLLLRGNYLQGEIPIA-LCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 407 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~-l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6778888888999999999988 66665 5889999999999999998776
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=245.75 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=131.3
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
++++.|++++|.++ .+|..++++++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555555555555 45555555555555555555554 444332 34455555555555444 3444444444444444
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
+++|++.+.+|..+.. . .++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 4444444444433221 0 00111223566666666666665 555556666666666666666665
Q ss_pred ccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCC
Q 042089 359 SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL 438 (557)
Q Consensus 359 ~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l 438 (557)
..+.+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.+++.+++|+.|+|++|++.+.+|..+.++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 33333356666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCEEEccCCcCc
Q 042089 439 QKLRILDLSHNKLN 452 (557)
Q Consensus 439 ~~L~~Ldls~N~l~ 452 (557)
++|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 66666666655443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.8e-28 Score=242.66 Aligned_cols=283 Identities=21% Similarity=0.204 Sum_probs=188.6
Q ss_pred CCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcc--cCCccccCCCCCcEEE
Q 042089 152 LEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG--NIPYSIGEMKELFLLD 229 (557)
Q Consensus 152 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 229 (557)
-+.++++++.++.. |....++|++|++++|.++ .+|..++..+++|++|++++|.++. ..+..+..+++|++|+
T Consensus 9 ~~~l~c~~~~l~~i---p~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 9 GTEIRCNSKGLTSV---PTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TTEEECCSSCCSSC---CSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCEEEcCCCCcccC---CCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 35788888877654 4444578999999999998 7777665679999999999999873 3466777899999999
Q ss_pred cCCCeeeeecCcccccCCCCCcEEeccCCccccccC-ccccCcccccceecccccccccccccccCCCCCcEEEccCCcc
Q 042089 230 LSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIF-PTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 308 (557)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l 308 (557)
+++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 9999987 55554 4568888888888888765443 3455666666666666666655555555556666666666655
Q ss_pred cC-ccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh
Q 042089 309 SG-HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387 (557)
Q Consensus 309 ~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l 387 (557)
++ .+|..+..+++|++|++++|.+++..|..+.. +++|++|++++|++++..+..+
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------------------l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-----------------------LSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-----------------------CTTCCEEECTTSCCSBCCSGGG
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC-----------------------CCCCCEEECCCCccCccChhhc
Confidence 54 34555555555555555555554444444444 4555555555555554445556
Q ss_pred hcCCCCcEEeCCCCcccccCCccccCCC-CccEEEcCCCcccccCCcc--ccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 388 LRSTELLTLDLRDNKFFGRIPHQINKHS-ELRVLLLRGNYLQGEIPIA--LCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 388 ~~~~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~g~ip~~--l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
..+++|++|++++|++++..|..+..++ +|++|+|++|++++..+.. ..-+...+.+....+.+.+..|+.++...
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 6777777888888877777777777764 7888888888877543210 11122344455667777777777665543
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=244.66 Aligned_cols=255 Identities=20% Similarity=0.202 Sum_probs=177.9
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
+|++|++++|.+++..+..+ ..+++|+.|++++|.+++..|..+.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 44445555554442222223 23566666666666666555556666666666666666665 45544445666666777
Q ss_pred ccCCccccccC-ccccCcccccceecccc-cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcC
Q 042089 255 VSENNFYGHIF-PTYMNLTQLRGLYLKNN-HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 255 Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l 332 (557)
+++|.+.+..+ ..+..+++|++|++++| .+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 76666654322 35666777777777777 35555566677778888888888888877788888888888888888887
Q ss_pred CCCcchhhccCCCCcEEEccCcccccccccc----cCCCCccEEEccCCcccc----cchhhhhcCCCCcEEeCCCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASF----LNLSSIMHLYLQKNALSG----QIPSTLLRSTELLTLDLRDNKFF 404 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~----~~~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~N~l~ 404 (557)
+...+..+..+++|+.|++++|.+++..+.. .....++.++++++.+++ .+|..+..+++|++|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 6444444556788888888888887644322 246778889999998876 47888999999999999999997
Q ss_pred ccCCcc-ccCCCCccEEEcCCCcccccCC
Q 042089 405 GRIPHQ-INKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 405 ~~~p~~-l~~l~~L~~L~L~~N~l~g~ip 432 (557)
.+|.+ ++.+++|++|+|++|++++..|
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 67766 5899999999999999997654
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.1e-28 Score=240.88 Aligned_cols=235 Identities=18% Similarity=0.211 Sum_probs=197.4
Q ss_pred cCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCc
Q 042089 172 KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLE 251 (557)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 251 (557)
....++.|++++|.++ .+|..++. +++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+ ..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCC
Confidence 4578999999999998 89998875 999999999999999 89999999999999999999998 787764 6899999
Q ss_pred EEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCc
Q 042089 252 YLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331 (557)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~ 331 (557)
+|++++|.+.+.+|..+... ..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred EEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 99999999988888766541 12233555677778888877777 677777778888888888888
Q ss_pred CCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCcc
Q 042089 332 LEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ 410 (557)
Q Consensus 332 l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~ 410 (557)
+++ +|..+..+++|++|++++|.+.+.+|..+ .+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|.+
T Consensus 218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 774 55567888888888888888888777655 7888888888888888889988999999999999999999999999
Q ss_pred ccCCCCccEEEcCCCccc
Q 042089 411 INKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 411 l~~l~~L~~L~L~~N~l~ 428 (557)
++.+++|+.+++..+.+.
T Consensus 297 l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGSCTTCEEECCGGGSC
T ss_pred HhhccCceEEeCCHHHHH
Confidence 999999999998877665
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.2e-29 Score=248.65 Aligned_cols=247 Identities=20% Similarity=0.192 Sum_probs=194.5
Q ss_pred ccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeee-eecCcccc------cCCCCCcEEeccCCccccccCccc--
Q 042089 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS-GDLSATSV------NGCASLEYLDVSENNFYGHIFPTY-- 268 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~~~~~-- 268 (557)
.++|+.+++++|.+ .+|..+... |+.|++++|.+. +.++.... ..+++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45677777777777 566655544 777788887773 44554332 147788888888888887777765
Q ss_pred cCcccccceecccccccccccccccCC-----CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC--cchhh-
Q 042089 269 MNLTQLRGLYLKNNHFTGKIKAGLLNS-----HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--IPVQI- 340 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~~~~~~l~~~-----~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~--~~~~l- 340 (557)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..++.+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7788888888888888866 6666655 8899999999999888888888999999999999988765 34444
Q ss_pred -ccCCCCcEEEccCccccc--ccc-ccc-CCCCccEEEccCCcccccch-hhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 341 -NNFRQLEILYLSENRLFG--SIA-SFL-NLSSIMHLYLQKNALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 341 -~~l~~L~~L~L~~n~l~~--~i~-~~~-~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
..+++|++|++++|.+++ .++ ..+ .+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|.++.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 788999999999999874 223 222 67899999999999998775 45667889999999999997 8888877
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++|++|+|++|++++. |. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8899999999999966 66 88999999999999999863
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.1e-30 Score=282.87 Aligned_cols=234 Identities=15% Similarity=0.057 Sum_probs=110.9
Q ss_pred CCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc-cCccccCcccccceeccc---------ccc
Q 042089 215 IPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH-IFPTYMNLTQLRGLYLKN---------NHF 284 (557)
Q Consensus 215 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~~ 284 (557)
++..+..+++|++|++++|.+++.........+++|++|++++| +... ++.....+++|++|++.+ +.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 33333345555555555555443322233344555555555554 2211 111122345555555522 233
Q ss_pred ccccccccc-CCCCCcEEEccCCcccCccCcccc-CCCCCcEEEcC--C----CcCCC-----CcchhhccCCCCcEEEc
Q 042089 285 TGKIKAGLL-NSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMS--K----NHLEG-----NIPVQINNFRQLEILYL 351 (557)
Q Consensus 285 ~~~~~~~l~-~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~--~----n~l~~-----~~~~~l~~l~~L~~L~L 351 (557)
++.....+. .+++|++|+++.|.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 322222221 255666666655555554444443 35566666665 2 33331 12222455566666666
Q ss_pred cCcccccccc-ccc-CCCCccEEEccCCcccccchhhh-hcCCCCcEEeCCCCcccccCCc-cccCCCCccEEEcCCCcc
Q 042089 352 SENRLFGSIA-SFL-NLSSIMHLYLQKNALSGQIPSTL-LRSTELLTLDLRDNKFFGRIPH-QINKHSELRVLLLRGNYL 427 (557)
Q Consensus 352 ~~n~l~~~i~-~~~-~~~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l 427 (557)
++ .+++... ... .+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|+.|++++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 55 3333222 222 25566666666666655444333 4566666666666666444333 233456666666666666
Q ss_pred cccCCccc-cCCCCCCEEEccCCc
Q 042089 428 QGEIPIAL-CQLQKLRILDLSHNK 450 (557)
Q Consensus 428 ~g~ip~~l-~~l~~L~~Ldls~N~ 450 (557)
+......+ ..+++|++..+..+.
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CHHHHHHHHHhCCCCEEEEecCCC
Confidence 44333333 345555555554443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5e-29 Score=247.84 Aligned_cols=267 Identities=18% Similarity=0.195 Sum_probs=216.9
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
++..+++.+.+. ..+..+...+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 455566666654 3444555557789999999999987777888899999999999999886554 567889999999
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999887533 3378999999999988665543 57899999999999988888888999999999999999987
Q ss_pred cchhhc-cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 336 IPVQIN-NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 336 ~~~~l~-~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
.+..+. .+++|++|++++|.+++. +....+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|.++..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 777764 789999999999998764 555568899999999999985 4555888999999999999997 578888889
Q ss_pred CCccEEEcCCCccc-ccCCccccCCCCCCEEEcc-CCcCcCCcCc
Q 042089 415 SELRVLLLRGNYLQ-GEIPIALCQLQKLRILDLS-HNKLNGSIPS 457 (557)
Q Consensus 415 ~~L~~L~L~~N~l~-g~ip~~l~~l~~L~~Ldls-~N~l~g~ip~ 457 (557)
++|+.|++++|+++ +.+|..+..+++|+.++++ .+.++|..|.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999999998 7788888899999999998 4556666654
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.2e-27 Score=243.64 Aligned_cols=249 Identities=18% Similarity=0.145 Sum_probs=163.2
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
...++.++..++ .+|..+ .++++.|++++|.+++..|..|.++++|++|++++|.+.+ ++...+.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEEC
Confidence 345555555555 455544 2456666666666665555555666666666666665552 23233344555555555
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
++|.++ +..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|+..+.
T Consensus 131 ~~n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 131 FDNWLT------------------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp CSSCCS------------------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCcCC------------------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 555544 33334444555555555555555544444555566666666665333323
Q ss_pred cc-hhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 336 IP-VQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 336 ~~-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
++ ..+..+++|++|++++|.+++ +|.+..+++|++|++++|++++..|..+.++++|+.|++++|++++..|.++..+
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 33 346667777777777777764 4556677888888888888888788888888888888888888888888888888
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8888888888888876667778888888888888887654
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=2.7e-30 Score=279.73 Aligned_cols=421 Identities=15% Similarity=0.107 Sum_probs=302.6
Q ss_pred CCCCcCEEeCCCCCCccc---CC------------ccCCCCCCCCEEECCCCcCCccCchhcc-CCCCCCEEeCcCc-cc
Q 042089 2 KLKNLTELDLRENNLEGQ---LP------------WRLSDLTGLKVFDISSNQLSGNLPSVIA-NLTSLEYLVLSDN-NF 64 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~---~~------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l 64 (557)
++++|++|+++++..... .| .....+++|++|+|++|.+++..+..+. .+++|++|+|++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 368899999999863221 22 1234688999999999999988777776 6999999999999 55
Q ss_pred CcccChhhhcCCCCCcEEEecCccCcccccC---CCCCCCCcccEEECCCCC--C--CCcChhhhCCCCCcEEEccCCcC
Q 042089 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKT---ENWIPTFQLKVLQLPNCS--L--KVIPSFLLHQYNLKFLDLSSNKL 137 (557)
Q Consensus 65 ~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~n~--l--~~ip~~l~~~~~L~~L~Ls~n~l 137 (557)
+.........++++|++|++++|.+.+..+. .....+++|++|++++|. + ..++.....+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 5432334566899999999999986543221 123467799999999997 2 22344456789999999999843
Q ss_pred cCCCcHHHhhcCCCCCEEEccCcc-------ccCcccCCcccCCCccEE-ECcCCcCcCCCchhHhhhccCCcEEeCCCC
Q 042089 138 VGNFPTWLMQNNTNLEVLRLSNNS-------FSGILQLPKVKHDFLRHL-DISNNNLIGTLPQNMGTVLQKLMLIDISKN 209 (557)
Q Consensus 138 ~~~~p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 209 (557)
.+.+|..+ .++++|+.|+++.+. +.+.. ..+..+++|+.+ .+.... .+.++..+ ..+++|+.|++++|
T Consensus 224 ~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~l~~~~~L~~Ls~~~~~~-~~~l~~~~-~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 224 LEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLS-VALSGCKELRCLSGFWDAV-PAYLPAVY-SVCSRLTTLNLSYA 299 (594)
T ss_dssp HHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHH-HHHHTCTTCCEEECCBTCC-GGGGGGGH-HHHTTCCEEECTTC
T ss_pred HHHHHHHH-hcCCcceEcccccccCccchhhHHHHH-HHHhcCCCcccccCCcccc-hhhHHHHH-HhhCCCCEEEccCC
Confidence 33466655 589999999976553 22221 123478889998 444332 23445444 35899999999999
Q ss_pred cCcccCC-ccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccC---------CccccccCcccc-Cccccccee
Q 042089 210 NFEGNIP-YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE---------NNFYGHIFPTYM-NLTQLRGLY 278 (557)
Q Consensus 210 ~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~---------n~l~~~~~~~~~-~l~~L~~L~ 278 (557)
.+++... ..+..+++|++|++++| +.+.....+...+++|++|++.. +.+++.....+. .+++|+.|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 9775433 33568899999999988 54333333445689999999943 445443333333 478999999
Q ss_pred ccccccccccccccc-CCCCCcEEEcc--C----CcccC-----ccCccccCCCCCcEEEcCCCcCCCCcchhhcc-CCC
Q 042089 279 LKNNHFTGKIKAGLL-NSHGLVVLDIS--N----NLLSG-----HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN-FRQ 345 (557)
Q Consensus 279 L~~n~~~~~~~~~l~-~~~~L~~L~Ls--~----n~l~~-----~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~ 345 (557)
+..+.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..++. +++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 999999876665554 58999999999 3 45552 2233366789999999987 777776666766 899
Q ss_pred CcEEEccCcccccccc-cc-cCCCCccEEEccCCcccccchh-hhhcCCCCcEEeCCCCcccccCCccc-cCCCCccEEE
Q 042089 346 LEILYLSENRLFGSIA-SF-LNLSSIMHLYLQKNALSGQIPS-TLLRSTELLTLDLRDNKFFGRIPHQI-NKHSELRVLL 421 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~-~~-~~~~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ 421 (557)
|+.|++++|.+++... .. ..+++|++|++++|.+++..+. .+..+++|++|++++|+++......+ ..++.|++..
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999876433 33 2689999999999999765544 44568999999999999976655666 5688998888
Q ss_pred cCCCccc
Q 042089 422 LRGNYLQ 428 (557)
Q Consensus 422 L~~N~l~ 428 (557)
+..+...
T Consensus 538 ~~~~~~~ 544 (594)
T 2p1m_B 538 IDERGAP 544 (594)
T ss_dssp ECSSSCG
T ss_pred ecCCCcc
Confidence 8776544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=243.30 Aligned_cols=248 Identities=20% Similarity=0.200 Sum_probs=162.8
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
.+.++..+..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 456666666666 6666552 56677777777776666666666777777777776665 344444455666666666
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
++|.+++..+..+..+++|+ +|++++|.+++..+..+..+++|++|++++|+..+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~------------------------~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLK------------------------ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCC------------------------EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCcCCeeCHhHhhccccCc------------------------eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 66655543333444444444 455555544444444455555555555555332222
Q ss_pred c-chhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 336 I-PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 336 ~-~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
+ +..+..+++|++|++++|.++ .+|.+..+++|++|++++|++++..|..+.++++|+.|++++|++++..|.++..+
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred eCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 2 234566666666666666665 45555577778888888888887777888888888888888888887778888888
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 888888888888886666677888888888888888764
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.2e-27 Score=231.15 Aligned_cols=255 Identities=19% Similarity=0.163 Sum_probs=141.3
Q ss_pred EEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccC
Q 042089 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257 (557)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 257 (557)
+++.+++.++ .+|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------------- 69 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------------- 69 (285)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---------------------
Confidence 4444444444 344332 234555555555555444444455555555555555444
Q ss_pred CccccccCccccCcccccceeccccc-ccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCc
Q 042089 258 NNFYGHIFPTYMNLTQLRGLYLKNNH-FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336 (557)
Q Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 336 (557)
+..+..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus 70 ----~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 70 ----RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp ----EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ----eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 3333344444444444444443 33333444555555555555555555555555555566666666666665555
Q ss_pred chhhccCCCCcEEEccCccccccccc-ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCC
Q 042089 337 PVQINNFRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415 (557)
Q Consensus 337 ~~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~ 415 (557)
+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++..+.++..++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 55556666666666666666544433 22566666666666666666666677777777777777777665555667777
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 416 ~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
+|+.|++++|++....+.. .-...++.++.+.+.+.+..|..+...
T Consensus 226 ~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~ 271 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGR 271 (285)
T ss_dssp TCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred ccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCc
Confidence 7777777777776543321 011223344466677777777766543
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.4e-28 Score=244.03 Aligned_cols=248 Identities=21% Similarity=0.175 Sum_probs=205.5
Q ss_pred cCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcC-cccCCcccc-------CCCCCcEEEcCCCeeeeecCccc
Q 042089 172 KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF-EGNIPYSIG-------EMKELFLLDLSRNKFSGDLSATS 243 (557)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~~~~ 243 (557)
..++|+.+++++|.+ .+|..++.. |+.|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 445678888888888 778877643 78888888888 456666665 78899999999999988888765
Q ss_pred c-cCCCCCcEEeccCCccccccCccccCc-----ccccceecccccccccccccccCCCCCcEEEccCCcccCc--cCcc
Q 042089 244 V-NGCASLEYLDVSENNFYGHIFPTYMNL-----TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH--IPCW 315 (557)
Q Consensus 244 ~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~ 315 (557)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..+..+++|++|++++|.+.+. +|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 3 6789999999999999877 7777666 8999999999999988888999999999999999998775 3444
Q ss_pred c--cCCCCCcEEEcCCCcCCC--Ccc-hhhccCCCCcEEEccCcccccccc--cccCCCCccEEEccCCcccccchhhhh
Q 042089 316 I--GNFSYLDVLLMSKNHLEG--NIP-VQINNFRQLEILYLSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 316 l--~~~~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~i~--~~~~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|.+++.+| .+..+++|++|++++|+++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 4 789999999999999984 233 344678999999999999998764 3447899999999999998 7887776
Q ss_pred cCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
++|++|++++|++++. |. +..+++|++|+|++|++++.
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8899999999999866 66 88999999999999999863
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.9e-26 Score=225.65 Aligned_cols=227 Identities=21% Similarity=0.205 Sum_probs=202.6
Q ss_pred cEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccC
Q 042089 226 FLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305 (557)
Q Consensus 226 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~ 305 (557)
+.++.+++.++ .+|... .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777766 556533 46788888888888877777788999999999999999988899999999999999999
Q ss_pred Cc-ccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccc
Q 042089 306 NL-LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 306 n~-l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~ 383 (557)
|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 777778999999999999999999999889999999999999999999987666644 8999999999999999777
Q ss_pred hhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 384 PSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 384 p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+..+..+++|++|++++|++++..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 7789999999999999999999999999999999999999999998777789999999999999999987654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.8e-27 Score=247.80 Aligned_cols=235 Identities=19% Similarity=0.190 Sum_probs=186.5
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
++|+.|++++|.+++..|..++.+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 477788888887777666777788888888888887775554 4567788888888887765332 26788888
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc-cCCCCcEEEccCcccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN-NFRQLEILYLSENRLF 357 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 357 (557)
+++|.+++..+.. +++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 8888887665543 47788999999998888888888888999999999999888887776 7889999999999887
Q ss_pred cccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc-ccCCcccc
Q 042089 358 GSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ-GEIPIALC 436 (557)
Q Consensus 358 ~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-g~ip~~l~ 436 (557)
+. +....+++|++|+|++|++++.. ..+..+++|+.|++++|++++ +|.+++.+++|+.|++++|.+. +.+|..+.
T Consensus 183 ~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DV-KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE-ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc-cccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 65 44446888999999999988644 458888889999999999874 7778888888999999999888 67777788
Q ss_pred CCCCCCEEEcc
Q 042089 437 QLQKLRILDLS 447 (557)
Q Consensus 437 ~l~~L~~Ldls 447 (557)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 88888888876
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.6e-26 Score=234.71 Aligned_cols=247 Identities=18% Similarity=0.184 Sum_probs=198.4
Q ss_pred CCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEc
Q 042089 151 NLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230 (557)
Q Consensus 151 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 230 (557)
..+.++..+..++. +|....++++.|++++|++++..+..+. .+++|+.|++++|.+++..+..+.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~---iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLRE---VPDGISTNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSS---CCSCCCTTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCc---CCCCCCCCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 45678888877765 4545557899999999999965556664 6999999999999999888889999999999999
Q ss_pred CCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccc-cccccCCCCCcEEEccCCccc
Q 042089 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKI-KAGLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~~~~L~~L~Ls~n~l~ 309 (557)
++|+++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999998 677766788999999999999998777778889999999999985544444 446778889999999999887
Q ss_pred CccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhh
Q 042089 310 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 310 ~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
. +| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+ .+++|++|+|++|++++..+..+.
T Consensus 199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 4 44 36778888888888888887778888888888888888888876655544 677777777777777766666677
Q ss_pred cCCCCcEEeCCCCccc
Q 042089 389 RSTELLTLDLRDNKFF 404 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~ 404 (557)
.+++|+.|++++|++.
T Consensus 277 ~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCTTCCEEECCSSCEE
T ss_pred cccCCCEEEcCCCCcc
Confidence 7777777777777763
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.2e-26 Score=235.66 Aligned_cols=247 Identities=17% Similarity=0.165 Sum_probs=195.6
Q ss_pred CCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEc
Q 042089 151 NLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230 (557)
Q Consensus 151 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 230 (557)
..+.++.++..++. +|....+++++|++++|++++..+..+. .+++|+.|++++|.+++..+..+.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~~---iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE---VPQGIPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSS---CCSCCCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCc---cCCCCCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 45678888777765 3444557899999999999976666665 5999999999999999888899999999999999
Q ss_pred CCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccccc-ccccCCCCCcEEEccCCccc
Q 042089 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~~~~L~~L~Ls~n~l~ 309 (557)
++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|+..+.++ ..+..+++|++|++++|.++
T Consensus 131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999998 6777777889999999999999987666778889999999999854444444 45778888888888888887
Q ss_pred CccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhh
Q 042089 310 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 310 ~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
+. | .+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+ .+++|++|+|++|++++..+..+.
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 54 3 46777888888888888887777778888888888888887776555444 677777777777777765556666
Q ss_pred cCCCCcEEeCCCCccc
Q 042089 389 RSTELLTLDLRDNKFF 404 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~ 404 (557)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 7777777777777663
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.8e-28 Score=239.22 Aligned_cols=246 Identities=23% Similarity=0.219 Sum_probs=182.8
Q ss_pred CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|++|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~-----~~~~L~~L 104 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSIETL 104 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE-----ECTTCCEE
T ss_pred CCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc-----CCCCcCEE
Confidence 4555556666655544444443 46777777777777765443 6777777777777777763 22 23677788
Q ss_pred eccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCcccc-CCCCCcEEEcCCCcC
Q 042089 254 DVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMSKNHL 332 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~~n~l 332 (557)
++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 88887776654433 56788888888888877777777788888888888888877666663 678888888888888
Q ss_pred CCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccc-ccCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFF-GRIPHQI 411 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~-~~~p~~l 411 (557)
++. +. ...+++|++|++++|.+++..+.+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ +.+|.++
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred ccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 754 32 33478899999999998876666668899999999999998 57888889999999999999998 7888999
Q ss_pred cCCCCccEEEcCC-CcccccCCcc
Q 042089 412 NKHSELRVLLLRG-NYLQGEIPIA 434 (557)
Q Consensus 412 ~~l~~L~~L~L~~-N~l~g~ip~~ 434 (557)
..+++|+.+++++ +.++|..|..
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hccccceEEECCCchhccCCchhc
Confidence 9999999999984 4566665543
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.8e-25 Score=238.50 Aligned_cols=267 Identities=24% Similarity=0.288 Sum_probs=166.5
Q ss_pred cCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEec
Q 042089 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLL 85 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~ 85 (557)
+++|++++|.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|+|++|.++ .+|. .+
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l--------- 100 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LP--------- 100 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CC---------
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CC---------
Confidence 455555555555 4444443 45555555555555 3333 3455555555555554 3332 33
Q ss_pred CccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCc
Q 042089 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 165 (557)
++|++|++++|.+..+|. .+++|+.|++++|+++ .+|. .+++|++|++++|.+++.
T Consensus 101 ----------------~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 101 ----------------PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL 156 (622)
T ss_dssp ----------------TTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC
T ss_pred ----------------CCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc
Confidence 455555555555555554 3455666666666665 3443 246666666666666553
Q ss_pred ccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCccccc
Q 042089 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245 (557)
Q Consensus 166 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 245 (557)
.. .+.+|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.
T Consensus 157 ~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---- 218 (622)
T 3g06_A 157 PA----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---- 218 (622)
T ss_dssp CC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC----
T ss_pred CC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC----
Confidence 21 2355667777777666 355 235667777777777763 4432 356777777777776 4443
Q ss_pred CCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEE
Q 042089 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
.+++|++|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|..+.++++|+.|
T Consensus 219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 24677788888777765 33 34577888888888877 4554 4678888888888888 678888888889999
Q ss_pred EcCCCcCCCCcchhhccCC
Q 042089 326 LMSKNHLEGNIPVQINNFR 344 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~ 344 (557)
++++|.+++..|..+..++
T Consensus 290 ~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 290 NLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ECCSCCCCHHHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHhcc
Confidence 9999988888888776554
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.6e-25 Score=236.17 Aligned_cols=263 Identities=23% Similarity=0.285 Sum_probs=210.1
Q ss_pred CCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEE
Q 042089 29 GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108 (557)
Q Consensus 29 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 108 (557)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-----------------------------~l~~L~~L~ 87 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-----------------------------LPPELRTLE 87 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC-----------------------------CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC-----------------------------cCCCCCEEE
Confidence 4666667666666 5565554 56666666666665 3442 234677777
Q ss_pred CCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcC
Q 042089 109 LPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIG 188 (557)
Q Consensus 109 L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 188 (557)
+++|.+..+|. .+++|++|++++|+++ .+|. .+++|+.|++++|.+++... .+++|++|++++|.++
T Consensus 88 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~- 154 (622)
T 3g06_A 88 VSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA- 154 (622)
T ss_dssp ECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-
T ss_pred cCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCC-
Confidence 77788877887 6789999999999999 4665 57899999999999987532 3589999999999998
Q ss_pred CCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccc
Q 042089 189 TLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTY 268 (557)
Q Consensus 189 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 268 (557)
.+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. ..++|+.|++++|.++. +|.
T Consensus 155 ~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~-- 218 (622)
T 3g06_A 155 SLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPA-- 218 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCC--
T ss_pred CcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCC--
Confidence 4554 25789999999999985 66 45789999999999998 4554 34799999999999974 443
Q ss_pred cCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcE
Q 042089 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEI 348 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 348 (557)
.+++|++|++++|.+++ +| ..+++|++|++++|.++. +|. .+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 219 -~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred -CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence 34889999999999986 55 346899999999999984 565 5789999999999999 78999999999999
Q ss_pred EEccCcccccccccc
Q 042089 349 LYLSENRLFGSIASF 363 (557)
Q Consensus 349 L~L~~n~l~~~i~~~ 363 (557)
|++++|++++.+|..
T Consensus 289 L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 289 VNLEGNPLSERTLQA 303 (622)
T ss_dssp EECCSCCCCHHHHHH
T ss_pred EEecCCCCCCcCHHH
Confidence 999999999877654
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.9e-26 Score=237.76 Aligned_cols=229 Identities=24% Similarity=0.201 Sum_probs=198.4
Q ss_pred cCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCc
Q 042089 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299 (557)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~ 299 (557)
..+++|+.|++++|.+.+ +++..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred ccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 345689999999999985 444556789999999999999987665 8899999999999999985433 38999
Q ss_pred EEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc--CCCCccEEEccCC
Q 042089 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL--NLSSIMHLYLQKN 377 (557)
Q Consensus 300 ~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~--~~~~L~~L~L~~n 377 (557)
+|++++|.+++..+.. +++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+ .+++|++|+|++|
T Consensus 103 ~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9999999999877654 5789999999999999999999999999999999999999776654 6899999999999
Q ss_pred cccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc-CCcC
Q 042089 378 ALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN-GSIP 456 (557)
Q Consensus 378 ~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~-g~ip 456 (557)
.+++..+ ...+++|++|++++|++++. |..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9997633 44689999999999999864 5558899999999999999995 7888999999999999999999 6777
Q ss_pred ccccccc
Q 042089 457 SCFANVL 463 (557)
Q Consensus 457 ~~~~~l~ 463 (557)
..+..+.
T Consensus 256 ~~~~~l~ 262 (487)
T 3oja_A 256 DFFSKNQ 262 (487)
T ss_dssp HHHTTCH
T ss_pred HHHHhCC
Confidence 7666553
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.4e-24 Score=209.59 Aligned_cols=207 Identities=20% Similarity=0.191 Sum_probs=136.1
Q ss_pred CCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcC
Q 042089 249 SLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~ 328 (557)
++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444333344445555555555555554444455555666666666666665555556666666666666
Q ss_pred CCcCCCCcchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCc----EEeCCCCc
Q 042089 329 KNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELL----TLDLRDNK 402 (557)
Q Consensus 329 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~----~L~L~~N~ 402 (557)
+|.+++..+..+..+++|++|++++|.+++ .+|..+ .+++|++|++++|++++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 666665555556666666666666666655 234433 667777777777777766666666666666 89999999
Q ss_pred ccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 403 l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9765554444 4589999999999997666678999999999999999998765
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.5e-24 Score=207.12 Aligned_cols=224 Identities=19% Similarity=0.244 Sum_probs=121.8
Q ss_pred ECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 180 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
+..+..++ .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 13 ~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 13 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp ECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred EecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc
Confidence 33333433 455443 245666666666666555556666666666666666665 3333334556666666666666
Q ss_pred cccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccC-ccCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG-HIPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 655555555555666666666665555444445555566666666665554 2455555555555555555555554444
Q ss_pred hhccCCCCcEEEccCcccccccccccCCCCcc-EEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCc
Q 042089 339 QINNFRQLEILYLSENRLFGSIASFLNLSSIM-HLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSEL 417 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~-~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L 417 (557)
.+..+++|+ .+. +|++++|++++..+..+ ...+|+.|++++|++++..+..+..+++|
T Consensus 168 ~~~~l~~L~--------------------~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 168 DLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GGHHHHTCT--------------------TCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred Hhhhhhhcc--------------------ccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccc
Confidence 444444444 111 45555555543333222 22356666666666654444445556666
Q ss_pred cEEEcCCCcccc
Q 042089 418 RVLLLRGNYLQG 429 (557)
Q Consensus 418 ~~L~L~~N~l~g 429 (557)
+.|++++|++++
T Consensus 227 ~~L~l~~N~~~c 238 (276)
T 2z62_A 227 QKIWLHTNPWDC 238 (276)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEccCCcccc
Confidence 666666666653
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.3e-24 Score=209.19 Aligned_cols=187 Identities=20% Similarity=0.206 Sum_probs=140.5
Q ss_pred ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCc
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 347 (557)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34445555555555555431 2455666777777777777766666667777777777777777766666677777777
Q ss_pred EEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCc
Q 042089 348 ILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY 426 (557)
Q Consensus 348 ~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 426 (557)
+|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..|..++.+++|+.|++++|.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 77777777776555543 67888888888888887777778888999999999999988888888899999999999998
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 427 LQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 427 l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+.+. ++.|+.++++.|.++|.+|.+++++.
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 8744 56789999999999999999888764
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.2e-24 Score=209.32 Aligned_cols=226 Identities=18% Similarity=0.158 Sum_probs=164.5
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecc
Q 042089 201 LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLK 280 (557)
Q Consensus 201 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (557)
+..+++..+.+... .....+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. +.+..+++|++|+++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 33444444444332 23445566666666666654 2322 34566666666666666542 356667777777777
Q ss_pred cccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccc
Q 042089 281 NNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360 (557)
Q Consensus 281 ~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i 360 (557)
+|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77777666666777788888888888888777777788888888888888888777777788888888888888888766
Q ss_pred cccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCC
Q 042089 361 ASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQ 439 (557)
Q Consensus 361 ~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 439 (557)
+..+ .+++|++|++++|++++..|..+..+++|++|++++|++.+. ++.|+.++++.|+++|.+|.+++.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 6554 788888899999988887777788899999999999987654 55788999999999999998877655
Q ss_pred C
Q 042089 440 K 440 (557)
Q Consensus 440 ~ 440 (557)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 3
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.6e-25 Score=228.91 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=147.1
Q ss_pred cCcccccceecccccccc----cccccccCCCCCcEEEccCCcccCccCcccc----CC---------CCCcEEEcCCCc
Q 042089 269 MNLTQLRGLYLKNNHFTG----KIKAGLLNSHGLVVLDISNNLLSGHIPCWIG----NF---------SYLDVLLMSKNH 331 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~----~~---------~~L~~L~l~~n~ 331 (557)
..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456677777777777665 3566667777888888888877644333333 33 788888888888
Q ss_pred CC-CCcc---hhhccCCCCcEEEccCcccc--c---ccc-cccCCCCccEEEccCCccc----ccchhhhhcCCCCcEEe
Q 042089 332 LE-GNIP---VQINNFRQLEILYLSENRLF--G---SIA-SFLNLSSIMHLYLQKNALS----GQIPSTLLRSTELLTLD 397 (557)
Q Consensus 332 l~-~~~~---~~l~~l~~L~~L~L~~n~l~--~---~i~-~~~~~~~L~~L~L~~n~l~----~~~p~~l~~~~~L~~L~ 397 (557)
++ +.++ ..+..+++|++|++++|.++ | .++ .+..+++|++|+|++|.++ +.+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 87 3444 46778889999999999887 3 344 4447899999999999996 57888999999999999
Q ss_pred CCCCccccc----CCcccc--CCCCccEEEcCCCcccc----cCCccc-cCCCCCCEEEccCCcCcCCcC
Q 042089 398 LRDNKFFGR----IPHQIN--KHSELRVLLLRGNYLQG----EIPIAL-CQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 398 L~~N~l~~~----~p~~l~--~l~~L~~L~L~~N~l~g----~ip~~l-~~l~~L~~Ldls~N~l~g~ip 456 (557)
+++|++++. +|.++. .+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999876 566763 48999999999999998 588887 678999999999999998765
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1e-22 Score=197.39 Aligned_cols=204 Identities=21% Similarity=0.206 Sum_probs=147.8
Q ss_pred CcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCC
Q 042089 250 LEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329 (557)
Q Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~ 329 (557)
.++++++++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555555542 333222 3556666666666655455566666777777777766655555566677777777777
Q ss_pred CcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCC
Q 042089 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIP 408 (557)
Q Consensus 330 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p 408 (557)
|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77776666666777777777777777776555544 67888888888888886666668888999999999999987777
Q ss_pred ccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 409 HQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 409 ~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.-+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 778889999999999999997666678899999999999999987644
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.3e-24 Score=217.73 Aligned_cols=253 Identities=18% Similarity=0.231 Sum_probs=161.3
Q ss_pred ccEEECcCCcCcCCCchhHhhhc--cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVL--QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
++.++++++.+. +..+. .+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 49 ~~~l~l~~~~~~---~~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~-------------- 109 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST-------------- 109 (336)
T ss_dssp SSEEECTTCBCC---HHHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH--------------
T ss_pred heeeccccccCC---HHHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH--------------
Confidence 556666666554 22222 23 5566666666665544433 334555555555555544321
Q ss_pred eccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCC-cccCc-cCccccCCCCCcEEEcCCC-
Q 042089 254 DVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN-LLSGH-IPCWIGNFSYLDVLLMSKN- 330 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~-~p~~l~~~~~L~~L~l~~n- 330 (557)
++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++|
T Consensus 110 ----------~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 110 ----------LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp ----------HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred ----------HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 3333444455555555555555555555566666666666666 45542 5555666777777777777
Q ss_pred cCCCC-cchhhccCC-CCcEEEccCc--ccc-ccccccc-CCCCccEEEccCCc-ccccchhhhhcCCCCcEEeCCCCc-
Q 042089 331 HLEGN-IPVQINNFR-QLEILYLSEN--RLF-GSIASFL-NLSSIMHLYLQKNA-LSGQIPSTLLRSTELLTLDLRDNK- 402 (557)
Q Consensus 331 ~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~i~~~~-~~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~N~- 402 (557)
.+++. ++..+..++ +|++|++++| .++ +.++... .+++|++|++++|. +++..+..+.++++|++|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 66654 566677777 8888888887 444 3444444 67888888888888 777777888889999999999984
Q ss_pred ccccCCccccCCCCccEEEcCCCcccccCCccccCC-CCCCEEEccCCcCcCCcCccccc
Q 042089 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL-QKLRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 403 l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip~~~~~ 461 (557)
++......++.+++|+.|++++| ++.. .+..+ ..+..|++++|++++..|+.+++
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 43333346788999999999998 4432 22222 23566678999999999987764
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.1e-25 Score=222.02 Aligned_cols=257 Identities=17% Similarity=0.156 Sum_probs=153.7
Q ss_pred EECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCC----ccccCCC-CCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP----YSIGEMK-ELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 179 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
++++.|.++|.+|..+. ..++|+.|++++|.+++..+ ..+..++ +|++|++++|.++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----------------- 64 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----------------- 64 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-----------------
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-----------------
Confidence 44555555555544432 23345555555555554333 3444444 4555555555554
Q ss_pred eccCCccccccCccccCc-----ccccceecccccccccccccc----cCC-CCCcEEEccCCcccCccCcccc----C-
Q 042089 254 DVSENNFYGHIFPTYMNL-----TQLRGLYLKNNHFTGKIKAGL----LNS-HGLVVLDISNNLLSGHIPCWIG----N- 318 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~l----~~~-~~L~~L~Ls~n~l~~~~p~~l~----~- 318 (557)
+..+..+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. .
T Consensus 65 --------~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 136 (362)
T 3goz_A 65 --------FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136 (362)
T ss_dssp --------GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred --------HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence 3333333322 455555555555544433322 222 5666666666666655443332 2
Q ss_pred CCCCcEEEcCCCcCCCCc----chhhccCC-CCcEEEccCcccccccccc-----cCC-CCccEEEccCCccccc----c
Q 042089 319 FSYLDVLLMSKNHLEGNI----PVQINNFR-QLEILYLSENRLFGSIASF-----LNL-SSIMHLYLQKNALSGQ----I 383 (557)
Q Consensus 319 ~~~L~~L~l~~n~l~~~~----~~~l~~l~-~L~~L~L~~n~l~~~i~~~-----~~~-~~L~~L~L~~n~l~~~----~ 383 (557)
.++|++|++++|.+++.. +..+..++ +|++|++++|.+++..+.. ..+ ++|++|+|++|.+++. +
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 246777777777766433 33344444 7777777777776644421 134 4788888888888753 5
Q ss_pred hhhhhc-CCCCcEEeCCCCcccccCC----ccccCCCCccEEEcCCCccccc-------CCccccCCCCCCEEEccCCcC
Q 042089 384 PSTLLR-STELLTLDLRDNKFFGRIP----HQINKHSELRVLLLRGNYLQGE-------IPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 384 p~~l~~-~~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~g~-------ip~~l~~l~~L~~Ldls~N~l 451 (557)
+..+.. .++|++|++++|++++..+ ..+..+++|++|+|++|++.+. ++..+..+++|+.||+++|++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 566665 4589999999999877554 3446678899999999985533 344667888999999999999
Q ss_pred cCCcCccccc
Q 042089 452 NGSIPSCFAN 461 (557)
Q Consensus 452 ~g~ip~~~~~ 461 (557)
.+..|..+.+
T Consensus 297 ~~~~~~~~~~ 306 (362)
T 3goz_A 297 HPSHSIPISN 306 (362)
T ss_dssp CGGGCHHHHH
T ss_pred CCcchHHHHH
Confidence 8776655443
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.4e-22 Score=196.63 Aligned_cols=178 Identities=26% Similarity=0.252 Sum_probs=118.5
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEcc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 352 (557)
+++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 444444444444444444455555555555555555543221 45555666666666655 455555666666666666
Q ss_pred Cccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccC
Q 042089 353 ENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 353 ~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
+|++++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 666665444433 6677777777777777666666777888888888888887555556677888888888888888 77
Q ss_pred CccccCCCCCCEEEccCCcCcCC
Q 042089 432 PIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
|..+..+++|+.+++++|++...
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCS
T ss_pred ChhhcccccCCeEEeCCCCccCc
Confidence 88888888899999999988754
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=208.36 Aligned_cols=225 Identities=20% Similarity=0.196 Sum_probs=170.6
Q ss_pred CCcEEEcCCCeeeeecCccc--ccCCCCCcEEeccCCccccccCccc--cCcccccceeccccccccccc----ccccCC
Q 042089 224 ELFLLDLSRNKFSGDLSATS--VNGCASLEYLDVSENNFYGHIFPTY--MNLTQLRGLYLKNNHFTGKIK----AGLLNS 295 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~l~~~ 295 (557)
.++.+.+.++.+........ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35555665555432111000 1124568888888888877777776 778888888888888876544 344568
Q ss_pred CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC--cc--hhhccCCCCcEEEccCcccccccc--c-c-cCCC
Q 042089 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--IP--VQINNFRQLEILYLSENRLFGSIA--S-F-LNLS 367 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~i~--~-~-~~~~ 367 (557)
++|++|++++|.+++..|..++.+++|++|++++|++.+. ++ .++..+++|++|++++|.++...+ . . ..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999999999888888898999999999999988753 22 234678899999999999863211 1 2 2678
Q ss_pred CccEEEccCCcccccchhhhhcC---CCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEE
Q 042089 368 SIMHLYLQKNALSGQIPSTLLRS---TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRIL 444 (557)
Q Consensus 368 ~L~~L~L~~n~l~~~~p~~l~~~---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L 444 (557)
+|++|++++|++++..|..+..+ ++|++|++++|+++ .+|.++. ++|++|+|++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 99999999999998878777777 69999999999997 7788775 7999999999999964 43 5788999999
Q ss_pred EccCCcCcC
Q 042089 445 DLSHNKLNG 453 (557)
Q Consensus 445 dls~N~l~g 453 (557)
++++|+++.
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999975
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.9e-22 Score=193.28 Aligned_cols=202 Identities=23% Similarity=0.231 Sum_probs=128.7
Q ss_pred CcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEcc
Q 042089 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDIS 304 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls 304 (557)
.+.++++++.++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 344444444444 333322 1345555555555544444445555555556665555554444444556666666666
Q ss_pred CCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccc
Q 042089 305 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 305 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~ 383 (557)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 666666555566666677777777777766666666677777777777777765444433 6777777777777777666
Q ss_pred hhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 384 PSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 384 p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
+..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66677788888888888888766666677788888888888877643
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9.2e-24 Score=211.64 Aligned_cols=221 Identities=17% Similarity=0.146 Sum_probs=179.8
Q ss_pred CCcEEEcCCCeeeeecCcccccCC--CCCcEEeccCCccccccCccccCcccccceeccccccccc-ccccccCCCCCcE
Q 042089 224 ELFLLDLSRNKFSGDLSATSVNGC--ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK-IKAGLLNSHGLVV 300 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~~~~L~~ 300 (557)
.++.++++++.+.. ..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35667777766542 122334 6778888888877766554 45688999999999988866 7888889999999
Q ss_pred EEccCCcccCccCccccCCCCCcEEEcCCC-cCCCC-cchhhccCCCCcEEEccCc-ccccc-ccccc-CCC-CccEEEc
Q 042089 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGN-IPVQINNFRQLEILYLSEN-RLFGS-IASFL-NLS-SIMHLYL 374 (557)
Q Consensus 301 L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-i~~~~-~~~-~L~~L~L 374 (557)
|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++... .++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999999888999999999999999999 67763 7777889999999999999 88764 45544 788 9999999
Q ss_pred cCC--ccc-ccchhhhhcCCCCcEEeCCCCc-ccccCCccccCCCCccEEEcCCCc-ccccCCccccCCCCCCEEEccCC
Q 042089 375 QKN--ALS-GQIPSTLLRSTELLTLDLRDNK-FFGRIPHQINKHSELRVLLLRGNY-LQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 375 ~~n--~l~-~~~p~~l~~~~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
++| .++ +.+|..+..+++|++|++++|. +++..+..++.+++|+.|++++|. ++......+.++++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 555 5678888899999999999999 788888899999999999999995 33333336788999999999988
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.4e-24 Score=221.89 Aligned_cols=251 Identities=20% Similarity=0.221 Sum_probs=169.6
Q ss_pred ccCCcEEeCCCCcCcccCC----ccccCCCCCcEEEcCCC---eeeeecCccc------ccCCCCCcEEeccCCcccc--
Q 042089 198 LQKLMLIDISKNNFEGNIP----YSIGEMKELFLLDLSRN---KFSGDLSATS------VNGCASLEYLDVSENNFYG-- 262 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~~~~~------~~~~~~L~~L~Ls~n~l~~-- 262 (557)
+++|+.|++++|.+++..+ ..+..+++|++|++++| ++.+.+|..+ +..+++|++|++++|.+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5566666666666654322 23456666666666664 2333444332 2456677777777777765
Q ss_pred --ccCccccCcccccceeccccccccccccccc----CC---------CCCcEEEccCCccc-CccC---ccccCCCCCc
Q 042089 263 --HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL----NS---------HGLVVLDISNNLLS-GHIP---CWIGNFSYLD 323 (557)
Q Consensus 263 --~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~----~~---------~~L~~L~Ls~n~l~-~~~p---~~l~~~~~L~ 323 (557)
.++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.++ +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 3555566677777777777777543333332 23 78888888888887 4444 4566778888
Q ss_pred EEEcCCCcCCC-----CcchhhccCCCCcEEEccCcccc----ccccccc-CCCCccEEEccCCccccc----chhhhhc
Q 042089 324 VLLMSKNHLEG-----NIPVQINNFRQLEILYLSENRLF----GSIASFL-NLSSIMHLYLQKNALSGQ----IPSTLLR 389 (557)
Q Consensus 324 ~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~i~~~~-~~~~L~~L~L~~n~l~~~----~p~~l~~ 389 (557)
+|++++|.++. ..+..+..+++|++|++++|.++ +.+|... .+++|++|+|++|++++. +|..+..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 88888888873 24447778888888888888885 4455544 788899999999988866 5667744
Q ss_pred --CCCCcEEeCCCCcccc----cCCccc-cCCCCccEEEcCCCcccccCC--ccc-cCCCCCCEEEccC
Q 042089 390 --STELLTLDLRDNKFFG----RIPHQI-NKHSELRVLLLRGNYLQGEIP--IAL-CQLQKLRILDLSH 448 (557)
Q Consensus 390 --~~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~g~ip--~~l-~~l~~L~~Ldls~ 448 (557)
+++|++|++++|++++ .+|.++ ..+++|+.|++++|++++..| ..+ ..+++++.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 8899999999999987 488877 668999999999999987764 332 2344444444433
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.4e-24 Score=218.16 Aligned_cols=205 Identities=19% Similarity=0.133 Sum_probs=127.7
Q ss_pred EEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHh---hhcc-CCcEEeCCCCcCcccCCccccCC-----CC
Q 042089 154 VLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMG---TVLQ-KLMLIDISKNNFEGNIPYSIGEM-----KE 224 (557)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~ 224 (557)
++.+++|.+++..+......++|++|++++|.+++..+..++ ..++ +|+.|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467888998887433334556699999999999866653322 3466 89999999999998777777765 89
Q ss_pred CcEEEcCCCeeeeecCccc---ccCC-CCCcEEeccCCccccccCcccc----C-cccccceecccccccccc----ccc
Q 042089 225 LFLLDLSRNKFSGDLSATS---VNGC-ASLEYLDVSENNFYGHIFPTYM----N-LTQLRGLYLKNNHFTGKI----KAG 291 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~---~~~~-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~n~~~~~~----~~~ 291 (557)
|++|++++|.+++..+..+ +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999875444322 2233 6788888888887665443332 2 246666666666666422 222
Q ss_pred ccCCC-CCcEEEccCCcccCccCcccc----CC-CCCcEEEcCCCcCCCC----cchhhcc-CCCCcEEEccCccccc
Q 042089 292 LLNSH-GLVVLDISNNLLSGHIPCWIG----NF-SYLDVLLMSKNHLEGN----IPVQINN-FRQLEILYLSENRLFG 358 (557)
Q Consensus 292 l~~~~-~L~~L~Ls~n~l~~~~p~~l~----~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~ 358 (557)
+...+ +|++|++++|.+++..+..++ .+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 33333 666666666666555443332 22 3555555555555542 2333333 2355555555555543
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.9e-22 Score=193.85 Aligned_cols=201 Identities=24% Similarity=0.246 Sum_probs=113.8
Q ss_pred cCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCc
Q 042089 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299 (557)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~ 299 (557)
.++++++.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34444445555444444 3433321 3445555555555444444455555555555555555432221 4455566
Q ss_pred EEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCc
Q 042089 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNA 378 (557)
Q Consensus 300 ~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~ 378 (557)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+ .+++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666555 445555566666666666666665555556666666666666666665444433 56666666666666
Q ss_pred ccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc
Q 042089 379 LSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 379 l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
+++..+..+..+++|++|++++|+++ .+|.++..+++|+.++|++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66444445566667777777777775 56666666667777777777665
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.8e-21 Score=186.47 Aligned_cols=181 Identities=22% Similarity=0.211 Sum_probs=143.6
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEcc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 352 (557)
..++++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666665 4444442 567778888888777777777778888888888888887777777788888888888
Q ss_pred Cccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccC
Q 042089 353 ENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 353 ~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
+|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+.+++.+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 888876555544 7888888888888888666667788999999999999998777778899999999999999999877
Q ss_pred CccccCCCCCCEEEccCCcCcCCcC
Q 042089 432 PIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+..+..+++|+.|++++|++++..+
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHHhCCCCCCEEEeeCCceeCCcc
Confidence 7789999999999999999998743
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.3e-21 Score=191.46 Aligned_cols=169 Identities=20% Similarity=0.309 Sum_probs=83.3
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEE
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 326 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~ 326 (557)
+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|++|++++|.+++. + .+..+++|++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEE
Confidence 3444444444444332211 33444444444444444321 1 344455555555555555542 2 145555555555
Q ss_pred cCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc
Q 042089 327 MSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 327 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
+++|.+++..+ +..+++|+.|++++|.+++.. .+..+++|++|++++|++++..+ +..+++|++|++++|++++.
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 55555554322 555555555555555555422 23355555555555555553322 55556666666666666543
Q ss_pred CCccccCCCCccEEEcCCCccc
Q 042089 407 IPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 407 ~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
.| +..+++|+.|++++|+++
T Consensus 211 ~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 211 SP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GTTCTTCCEEEEEEEEEE
T ss_pred cc--ccCCCCCCEEEccCCeee
Confidence 32 555566666666666655
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=194.56 Aligned_cols=225 Identities=17% Similarity=0.174 Sum_probs=119.0
Q ss_pred CCcEEEccCCcCcCCCcHHH--hhcCCCCCEEEccCccccCcccCCc--ccCCCccEEECcCCcCcCCCc----hhHhhh
Q 042089 126 NLKFLDLSSNKLVGNFPTWL--MQNNTNLEVLRLSNNSFSGILQLPK--VKHDFLRHLDISNNNLIGTLP----QNMGTV 197 (557)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~--~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~----~~~~~~ 197 (557)
.++.+.+.++.++...-..+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..++ .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 45566666655542111111 0134556777777776666543443 556677777777777765444 1222 4
Q ss_pred ccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeee--c-CcccccCCCCCcEEeccCCccccc--cCc-cccCc
Q 042089 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD--L-SATSVNGCASLEYLDVSENNFYGH--IFP-TYMNL 271 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~-~~~~~~~~~~L~~L~Ls~n~l~~~--~~~-~~~~l 271 (557)
+++|++|++++|.+.+..+..++.+++|++|++++|++.+. + +......+++|++|++++|.++.. .+. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 67777777777777766667777777777777777776542 1 122224556666666666665421 111 12344
Q ss_pred ccccceecccccccccccccccCC---CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcE
Q 042089 272 TQLRGLYLKNNHFTGKIKAGLLNS---HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEI 348 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l~~~---~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 348 (557)
++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 555555555555554444444443 35555555555555 3344332 4444555555544432 11 333444444
Q ss_pred EEccCccc
Q 042089 349 LYLSENRL 356 (557)
Q Consensus 349 L~L~~n~l 356 (557)
|++++|++
T Consensus 299 L~L~~N~l 306 (310)
T 4glp_A 299 LTLDGNPF 306 (310)
T ss_dssp EECSSTTT
T ss_pred EECcCCCC
Confidence 44444444
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.4e-21 Score=183.10 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=85.6
Q ss_pred CCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc-cccccCccccCcccccceeccc-ccccccccccccCCCCCcEE
Q 042089 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN-FYGHIFPTYMNLTQLRGLYLKN-NHFTGKIKAGLLNSHGLVVL 301 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~~~~L~~L 301 (557)
+|++|++++|+++ .++...+..+++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3444444444443 2222223334444444444443 3322222333444444444443 44443333344444444455
Q ss_pred EccCCcccCccCccccCCCCCc---EEEcCCC-cCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCC
Q 042089 302 DISNNLLSGHIPCWIGNFSYLD---VLLMSKN-HLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKN 377 (557)
Q Consensus 302 ~Ls~n~l~~~~p~~l~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n 377 (557)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ .+|++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~----------------------~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET----------------------LTLKLYNN 166 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE----------------------EEEECCSC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcce----------------------eEEEcCCC
Confidence 554444443 333 33444443 4444444 44433333344444444 04444444
Q ss_pred cccccchhhhhcCCCCcEEeCCCCc-ccccCCccccCC-CCccEEEcCCCcccccCCccccCCCCCCEEEccCC
Q 042089 378 ALSGQIPSTLLRSTELLTLDLRDNK-FFGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 378 ~l~~~~p~~l~~~~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
+++ .+|......++|+.|++++|+ +++..+.++..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 444 233222222455555555553 544444455555 55666666666555 33332 4555666666554
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.7e-21 Score=183.84 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=151.8
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCc-ccCccCccccCCCCCcEEEcCC-CcCCCCcchhhccCCCCcEEE
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL-LSGHIPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLEILY 350 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 350 (557)
++++|++++|++++..+..+..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666677777888888888886 6666666777888888888887 888866667788888888888
Q ss_pred ccCcccccccccccCCCCcc---EEEccCC-cccccchhhhhcCCCCc-EEeCCCCcccccCCccccCCCCccEEEcCCC
Q 042089 351 LSENRLFGSIASFLNLSSIM---HLYLQKN-ALSGQIPSTLLRSTELL-TLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 351 L~~n~l~~~i~~~~~~~~L~---~L~L~~n-~l~~~~p~~l~~~~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 425 (557)
+++|.+++ +|.+..+++|+ +|++++| ++++..+..+.++++|+ +|++++|+++ .+|......++|+.|++++|
T Consensus 112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 88888876 66655777777 9999999 89877777899999999 9999999997 66665444489999999999
Q ss_pred c-ccccCCccccCC-CCCCEEEccCCcCcCCcCccccccccc
Q 042089 426 Y-LQGEIPIALCQL-QKLRILDLSHNKLNGSIPSCFANVLFW 465 (557)
Q Consensus 426 ~-l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip~~~~~l~~~ 465 (557)
+ +++..+..+..+ ++|+.||+++|++++-.+..+.+++.+
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCcee
Confidence 5 997767789999 999999999999995433446555533
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.8e-21 Score=188.62 Aligned_cols=196 Identities=22% Similarity=0.287 Sum_probs=167.3
Q ss_pred CCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEE
Q 042089 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 45677778887777754 33 57789999999999999986544 88999999999999999874 368899999999
Q ss_pred EcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccc
Q 042089 326 LMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG 405 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~ 405 (557)
++++|.+++. +. +..+++|++|++++|.+++.. .+..+++|++|++++|++++. +. +..+++|++|++++|++++
T Consensus 113 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence 9999999874 33 899999999999999998644 466899999999999999964 43 8999999999999999976
Q ss_pred cCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 406 RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 406 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++ .|.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCE
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCe
Confidence 543 8889999999999999996653 8999999999999999986 444
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.2e-20 Score=178.89 Aligned_cols=178 Identities=19% Similarity=0.202 Sum_probs=122.0
Q ss_pred CcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCC
Q 042089 250 LEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329 (557)
Q Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~ 329 (557)
.++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555555554 2333322 3566666666666655555666666677777777776666666666677777777777
Q ss_pred CcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCC
Q 042089 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIP 408 (557)
Q Consensus 330 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p 408 (557)
|++++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776666666777777777777777765555443 67777777777777776666677788888888888888877666
Q ss_pred ccccCCCCccEEEcCCCccccc
Q 042089 409 HQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 409 ~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
..+..+++|+.|+|++|++++.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 7778888888888888888765
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5e-21 Score=203.05 Aligned_cols=184 Identities=23% Similarity=0.292 Sum_probs=95.0
Q ss_pred CCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEc
Q 042089 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~L 303 (557)
+++.|++++|.+++ +|..++ ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67777777777764 655442 56777777777665 344 334566666666666654 444 332 5666666
Q ss_pred cCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccc
Q 042089 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 304 s~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~ 383 (557)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|++|+|++|+++ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-ch
Confidence 6666655 444 34555555555555554 333 34455555555555544 333 22 44555555555554 33
Q ss_pred hhhhhcCCCC-------cEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccc
Q 042089 384 PSTLLRSTEL-------LTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435 (557)
Q Consensus 384 p~~l~~~~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 435 (557)
|. +.. +| +.|++++|+|+ .+|.++..+++|+.|+|++|++++.+|..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 33 222 33 44444444443 344444444444444444444444444443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.7e-20 Score=174.23 Aligned_cols=178 Identities=20% Similarity=0.198 Sum_probs=136.5
Q ss_pred ceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcc
Q 042089 276 GLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 276 ~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 355 (557)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3444445444 334333 3577788888887776666667777888888888888876666667778888888888888
Q ss_pred ccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc
Q 042089 356 LFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434 (557)
Q Consensus 356 l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 434 (557)
+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 876555543 78888888888888887666678888999999999999987666678889999999999997764
Q ss_pred ccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 435 LCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 435 l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
.++.|+.|+++.|+++|.+|..++++.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 456889999999999999998887664
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=5.9e-20 Score=170.57 Aligned_cols=174 Identities=21% Similarity=0.138 Sum_probs=115.5
Q ss_pred ccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEc
Q 042089 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 351 (557)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555556665555444444556666666666666666555555666666777777777666555555666777777777
Q ss_pred cCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 352 SENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 352 ~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++.+ .++.|++|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 7777765554433 67777777777777776556667778888888888887654 345788888888888888
Q ss_pred CCccccCCCCCCEEEccCCcCcCCcC
Q 042089 431 IPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 431 ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+|..++.++. ++..|...|..+
T Consensus 181 ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTCCBG
T ss_pred eeccCccccC----CccccccCCCcc
Confidence 8887776665 445555444433
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.5e-19 Score=181.86 Aligned_cols=241 Identities=16% Similarity=0.138 Sum_probs=135.1
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcE-Eec
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEY-LDV 255 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~-L~L 255 (557)
++++.++++++ .+|..+ .++++.|++++|+++...+.+|.++++|++|+|++|++.+.++...+.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666666 566544 2456666666666663333455666666666666666555555555555555443 333
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCC-CcCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK-NHLEG 334 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~-n~l~~ 334 (557)
..|++....+. .|..+++|++|++++|.+++..+..+.....+..+++.+ +++..
T Consensus 88 ~~N~l~~l~~~------------------------~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPE------------------------AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTT------------------------SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCch------------------------hhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 34444444344 444444555555555554444444444444444555543 23332
Q ss_pred CcchhhccC-CCCcEEEccCcccccccccccCCCCccEEEccC-Ccccccch-hhhhcCCCCcEEeCCCCcccccCCccc
Q 042089 335 NIPVQINNF-RQLEILYLSENRLFGSIASFLNLSSIMHLYLQK-NALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQI 411 (557)
Q Consensus 335 ~~~~~l~~l-~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~-n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~l 411 (557)
..+..+..+ ..++.|++++|+++...+..+...+|+++++.+ |.++ .+| ..|..+++|++||+++|+|+. +|.+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~- 220 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPSY- 220 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCSS-
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cChh-
Confidence 223334443 346677777777765444444666777777765 4454 454 456778888888888888864 4432
Q ss_pred cCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCc
Q 042089 412 NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 412 ~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~ 450 (557)
.+.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus 221 -~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 221 -GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 23455555555554444666 47778888888886543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=9e-20 Score=193.41 Aligned_cols=188 Identities=24% Similarity=0.346 Sum_probs=137.8
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
.+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 378888888888875 666553 67888888888887 666 236788888888888876 555 444 788888
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
+++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 88888876 555 46788888888888876 555 46778888888888876 555 54 78888888888877
Q ss_pred ccccccCCCCc-------cEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 359 SIASFLNLSSI-------MHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 359 ~i~~~~~~~~L-------~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
.+|.+.. +| +.|+|++|+++ .+|..+..+++|++|++++|++++.+|..+..+
T Consensus 194 ~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 SLPAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred chhhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4555222 56 88888888887 577777778888888888888888887777654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.1e-19 Score=180.91 Aligned_cols=240 Identities=18% Similarity=0.118 Sum_probs=161.2
Q ss_pred CEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCc-cccCCCCCcE-EEc
Q 042089 153 EVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPY-SIGEMKELFL-LDL 230 (557)
Q Consensus 153 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~L 230 (557)
++++.+++.++.. |..-.+++++|+|++|+++ .+|...+..+++|++|++++|.+.+.+|. +|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt~i---P~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEI---PSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSC---CTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCcc---CcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 5788888888754 4434578999999999998 77776556799999999999999777764 6788988776 556
Q ss_pred CCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccc-cccccccccccCCC-CCcEEEccCCcc
Q 042089 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN-HFTGKIKAGLLNSH-GLVVLDISNNLL 308 (557)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~~~-~L~~L~Ls~n~l 308 (557)
..|++. .++...+..+++|++|++++|.+....+..+....++..+++.++ .++...+..+.... .++.|++++|.+
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678887 666667788999999999999998766666666777778888664 45543344454443 577788888887
Q ss_pred cCccCccccCCCCCcEEEcCC-CcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh
Q 042089 309 SGHIPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387 (557)
Q Consensus 309 ~~~~p~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l 387 (557)
+. +|.......+|+.+++++ |.++...+..|..+++|++|++++|+++...+. .+.+|+.|...++.--..+| .+
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CT
T ss_pred cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-Cc
Confidence 74 344333456677777765 444433334567777777777777776642222 13344444444333222344 24
Q ss_pred hcCCCCcEEeCCCC
Q 042089 388 LRSTELLTLDLRDN 401 (557)
Q Consensus 388 ~~~~~L~~L~L~~N 401 (557)
.++++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 55555555555543
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5e-19 Score=189.72 Aligned_cols=173 Identities=24% Similarity=0.385 Sum_probs=117.0
Q ss_pred cCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcE
Q 042089 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEI 348 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 348 (557)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..| +..+++|+.|++++|.+++ + +.+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 345556666666665552 22 35556666666666666665444 5666666677776666664 2 25666777777
Q ss_pred EEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc
Q 042089 349 LYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 349 L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
|+|++|.+.+ ++.+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+++
T Consensus 114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 7777777664 45555677777777777777754 467777788888888888776555 777788888888888877
Q ss_pred ccCCccccCCCCCCEEEccCCcCcCC
Q 042089 429 GEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 429 g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
+. ..+..+++|+.|+|++|++++.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 53 3577788888888888888764
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.2e-18 Score=170.43 Aligned_cols=171 Identities=24% Similarity=0.402 Sum_probs=114.9
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEE
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEIL 349 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 349 (557)
.+++|+.|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 445555555555555422 2 24555666666666666665433 5666666666666666664 22 36667777777
Q ss_pred EccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 350 ~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
++++|.+++ ++.+..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 118 ~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 777777664 35555677777777777777754 467778888888888888876544 7778888888888888875
Q ss_pred cCCccccCCCCCCEEEccCCcCcC
Q 042089 430 EIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 430 ~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
+| .+..+++|+.|++++|+++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 34 47788888888888888875
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=161.31 Aligned_cols=155 Identities=25% Similarity=0.228 Sum_probs=121.9
Q ss_pred cEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccccccccc-ccCCCCccEEEccC
Q 042089 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQK 376 (557)
Q Consensus 299 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~ 376 (557)
+.+++++|.++. +|..+. ..+++|++++|++++..+ ..+..+++|++|++++|.+++..+. +..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 454443 345677777777765543 3466777777777777777765553 33778888888888
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88887777888899999999999999998889999999999999999999998889999999999999999999997754
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=4.9e-18 Score=182.02 Aligned_cols=191 Identities=17% Similarity=0.263 Sum_probs=134.9
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceec
Q 042089 200 KLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279 (557)
Q Consensus 200 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (557)
.+..+.+..+.+...++ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 45555666666664433 567788888888888876 4443 4578888888888888876444 777788888888
Q ss_pred ccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccc
Q 042089 280 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359 (557)
Q Consensus 280 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 359 (557)
++|.+++ +| .+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8887774 23 567777788888888877753 3466777777777777777754 5567777777777777777765
Q ss_pred cccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc
Q 042089 360 IASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 360 i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
.| +..+++|+.|+|++|++++. | .+..+++|+.|+|++|++++.
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred hh-hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 55 55677777777777777753 3 466777777777777777654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=6.5e-18 Score=158.08 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=89.9
Q ss_pred CCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCC
Q 042089 321 YLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 321 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~ 399 (557)
.++.|++++|++++..+..+..+++|++|++++|.+++..|..+ .+++|++|+|++|+++...+..+..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44555555555554444445555555555555555554434333 55566666666666664444456777888888888
Q ss_pred CCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 400 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
+|++++..|.++..+++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 8888777777888888888888888888877777788888888888888888753
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.1e-17 Score=157.56 Aligned_cols=155 Identities=22% Similarity=0.210 Sum_probs=113.7
Q ss_pred CcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccC
Q 042089 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQK 376 (557)
Q Consensus 298 L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~ 376 (557)
.+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+....+..+ .+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345555555554 3444332 566666666666666666666666777777777777654433433 677777777777
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7777666666788889999999999986 788888889999999999999997666778899999999999999987754
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.9e-18 Score=173.19 Aligned_cols=157 Identities=27% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCcEEEccCCcccCccCcccc-CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEc
Q 042089 297 GLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYL 374 (557)
Q Consensus 297 ~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L 374 (557)
.++.|++++|.+++..+..+. .+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+ .+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555555555554 55566666666666655555555666666666666666654444333 5666666666
Q ss_pred cCCcccccchhhhhcCCCCcEEeCCCCcccccCCccc---cCCCCccEEEcCCCcccccCCccccCCCC--CCEEEccCC
Q 042089 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI---NKHSELRVLLLRGNYLQGEIPIALCQLQK--LRILDLSHN 449 (557)
Q Consensus 375 ~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~g~ip~~l~~l~~--L~~Ldls~N 449 (557)
++|++++..|..+..+++|++|+|++|++++..+..+ ..+++|+.|+|++|++++..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666665556666666666666666666654322233 44666666666666666444445555554 366677777
Q ss_pred cCcC
Q 042089 450 KLNG 453 (557)
Q Consensus 450 ~l~g 453 (557)
++..
T Consensus 200 ~~~C 203 (361)
T 2xot_A 200 PLEC 203 (361)
T ss_dssp CEEC
T ss_pred CccC
Confidence 6654
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=155.51 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=94.5
Q ss_pred cEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccc
Q 042089 202 MLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 202 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 34555555554 3444332 23455666666655443444445566666666666666555555566666666666666
Q ss_pred ccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 282 n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66665555566666677777777777776666666667777777777777766666666666677777776666654
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1e-17 Score=163.81 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=114.2
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (557)
.+.+..+.+++.. .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+++
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~-------------------- 82 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTD-------------------- 82 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCC--------------------
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCC--------------------
Confidence 3344444444322 2345566666666666554 2322 2345555555555555543
Q ss_pred cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc
Q 042089 283 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362 (557)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 362 (557)
..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++. +.
T Consensus 83 ----~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~ 151 (291)
T 1h6t_A 83 ----IKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TV 151 (291)
T ss_dssp ----CGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GG
T ss_pred ----Ccc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hh
Confidence 222 44455555555555555541 2255566666666666666643 3466667777777777777653 55
Q ss_pred ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 363 FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 363 ~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
+..+++|++|++++|++++..| +..+++|++|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 5577777888888887775544 7788888888888888865 34 47788888888888888874
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=8.7e-18 Score=154.41 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=114.6
Q ss_pred cCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccc-cCCCCccE
Q 042089 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASF-LNLSSIMH 371 (557)
Q Consensus 293 ~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~-~~~~~L~~ 371 (557)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+.. ..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556777777777766 344 4666777777777777554 2346777888888888888887644443 37888888
Q ss_pred EEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcC
Q 042089 372 LYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 372 L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l 451 (557)
|++++|++++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 8888888888888888899999999999998334565 68889999999999999985 44 788899999999999998
Q ss_pred cC
Q 042089 452 NG 453 (557)
Q Consensus 452 ~g 453 (557)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.9e-17 Score=154.68 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=102.5
Q ss_pred cCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEec
Q 042089 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLL 85 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~ 85 (557)
.+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.++ .+|...+.++++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 356788887776 5676555 78888888888888887888888888888888888886 5665667777777777777
Q ss_pred CccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccC
Q 042089 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 164 (557)
+|.+.+ ++...+..+.+|++|++++|.+..+|..+..+++|++|++++|+++ .+|...+..+++|+.|++++|.+.+
T Consensus 97 ~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCc-cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 776653 2333345556666666666666666666666666666666666665 3333333455555555555555443
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.7e-17 Score=155.21 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=117.0
Q ss_pred cceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCc
Q 042089 275 RGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354 (557)
Q Consensus 275 ~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 354 (557)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444432 56777788777777766667777788888888888887777777888888888888888
Q ss_pred cccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 355 RLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 355 ~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
.++...+..+ .+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8875544443 68888888888888887778888888999999999999987777788888999999999998864
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=9.1e-18 Score=161.58 Aligned_cols=171 Identities=23% Similarity=0.311 Sum_probs=128.3
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEE
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEIL 349 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 349 (557)
.+.++..++++.+.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345566666777666633 2 45566777777777777764 34 56777788888888888776544 7778888888
Q ss_pred EccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 350 ~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
++++|++++ ++.... ++|++|++++|++++ ++ .+..+++|++|++++|++++. | .++.+++|+.|++++|++++
T Consensus 91 ~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCC-cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 888888775 343334 788888888888885 33 588888899999999988754 3 67888889999999999886
Q ss_pred cCCccccCCCCCCEEEccCCcCcCC
Q 042089 430 EIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 430 ~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
. ..+..+++|+.|++++|++++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 6 6688888999999999998866
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.3e-17 Score=151.55 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=65.5
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEE
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEIL 349 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 349 (557)
.+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|
T Consensus 64 ~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 64 YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 3344444444444332 12244555666666666666666556666666666666666666666556666666666666
Q ss_pred EccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcc
Q 042089 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF 403 (557)
Q Consensus 350 ~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l 403 (557)
++++|...+.++.+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus 142 ~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 66666532333333344444444444444442 22 334444444444444443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4e-17 Score=164.87 Aligned_cols=178 Identities=25% Similarity=0.234 Sum_probs=126.2
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCcccc-CCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG-EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
-+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|+++ .++...+..+++|++|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence 356777777776 5666552 4577788888888766666666 7788888888888877 44544556777888888
Q ss_pred ccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccc---cCCCCCcEEEcCCCc
Q 042089 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI---GNFSYLDVLLMSKNH 331 (557)
Q Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l---~~~~~L~~L~l~~n~ 331 (557)
|++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..+..+ ..+++|+.|++++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 88887776666667777778888888887777667777777888888888887776444444 457778888888888
Q ss_pred CCCCcchhhccCCC--CcEEEccCccccc
Q 042089 332 LEGNIPVQINNFRQ--LEILYLSENRLFG 358 (557)
Q Consensus 332 l~~~~~~~l~~l~~--L~~L~L~~n~l~~ 358 (557)
+++..+..+..++. ++.|++++|++..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 77666666666665 3677777777654
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=9.4e-19 Score=186.49 Aligned_cols=120 Identities=23% Similarity=0.222 Sum_probs=69.6
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+ .+++|++|+|++|++++ +| .+..+++|++|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4455555555553 333 555555555555555555 333322 55555556666666654 45 566666667777777
Q ss_pred CcccccC-CccccCCCCccEEEcCCCcccccCCcc---ccCCCCCCEEEc
Q 042089 401 NKFFGRI-PHQINKHSELRVLLLRGNYLQGEIPIA---LCQLQKLRILDL 446 (557)
Q Consensus 401 N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~~---l~~l~~L~~Ldl 446 (557)
|++++.. |..++.+++|+.|+|++|++++..|.. +..+++|++||+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7666655 666666777777777777776554422 234677777654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=7.1e-19 Score=187.43 Aligned_cols=108 Identities=26% Similarity=0.300 Sum_probs=88.2
Q ss_pred CCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 345 QLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
.|+.|++++|.+++ +|.+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|++++ +| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 47888888888876 566557888888888888888 778888888888888888888875 66 788888888888888
Q ss_pred CcccccC-CccccCCCCCCEEEccCCcCcCCcC
Q 042089 425 NYLQGEI-PIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 425 N~l~g~i-p~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++.+ |..+..+++|+.|++++|++++.+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 8888776 8888888888888888888887655
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.8e-17 Score=157.21 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=118.7
Q ss_pred CCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEc
Q 042089 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 327 (557)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l 327 (557)
.++..++++.+.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555555555554322 3455666666666666665 233 45666777777777777765444 667777777777
Q ss_pred CCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccC
Q 042089 328 SKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRI 407 (557)
Q Consensus 328 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~ 407 (557)
++|++++ +|.. .. ++|+.|++++|.+++ ++.+..+++|++|++++|++++. + .+..+++|++|++++|++++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 7777765 3322 22 778888888888775 45556788888888888888854 4 688889999999999999766
Q ss_pred CccccCCCCccEEEcCCCccccc
Q 042089 408 PHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 408 p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
..+..+++|+.|++++|++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 6788889999999999998855
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.6e-16 Score=145.16 Aligned_cols=131 Identities=24% Similarity=0.289 Sum_probs=105.0
Q ss_pred cEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 323 DVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 323 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
+.+++++|.++ .+|..+.. +++.|++++|.+++..+. +..+++|++|+|++|++++..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555553 44443332 677777777777665543 34778888888888888888888899999999999999
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..|.++..+++|++|+|++|++++.+|..+..+++|+.|++++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888889999999999999999999999999999999999999999998765
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.3e-17 Score=164.39 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=143.6
Q ss_pred CCCCCEEECCCCcCCccCchhccC-CCCCCEEeCcCcccC--cccChhhhcCCCCCcEEEecCccCcccccCCCCCC---
Q 042089 27 LTGLKVFDISSNQLSGNLPSVIAN-LTSLEYLVLSDNNFQ--GEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP--- 100 (557)
Q Consensus 27 l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--- 100 (557)
+.+++.|.++++ +.+.-...+.. +++|++|||++|++. ...+ +.++.++.+.+..+ .++..++..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~----~~~~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA----GTYPNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS----SSSGGGCCEEECTT----EECTTTTEEEET
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc----cccccccccccccc----ccCHHHhccccc
Confidence 567888888764 22222233434 778888888888876 1111 11222334444433 345555666
Q ss_pred -----CCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc----cCcccCCc
Q 042089 101 -----TFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF----SGILQLPK 170 (557)
Q Consensus 101 -----~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l----~~~~~~~~ 170 (557)
|.+|+.+++.+ .+..|++ .+..|++|+.+++++|.+. .++...|..+.++..+.+..+.. .......+
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 77778887777 6766654 4667777888888777776 55666666666666666554321 12222334
Q ss_pred ccCCCcc-EEECcCCcCcCCCchhHhhh---ccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccC
Q 042089 171 VKHDFLR-HLDISNNNLIGTLPQNMGTV---LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNG 246 (557)
Q Consensus 171 ~~~~~L~-~L~L~~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 246 (557)
..+..|+ .+.+... +.++..++.. ..++..+.+.++-...........+++|+.+++++|.++ .++...|.+
T Consensus 173 ~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~ 248 (329)
T 3sb4_A 173 IEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQ 248 (329)
T ss_dssp EESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTT
T ss_pred ccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhC
Confidence 4555555 4444332 2334333321 233444444332111000000112555666666655554 555555555
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCc-EEEccCCcccCccCccccCCCCCcEE
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV-VLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
|++|+.+++.+| +... .+..|..|.+|+ .+++.+ .++..-+.+|.+|++|+.+
T Consensus 249 ~~~L~~l~l~~n-i~~I------------------------~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTI------------------------GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECCTT-CCEE------------------------CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCCCEEECCcc-ccee------------------------hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 555555555554 3322 233344444444 444444 3333334445555555555
Q ss_pred EcCCCcCCCCcchhhccCCCCcEEE
Q 042089 326 LMSKNHLEGNIPVQINNFRQLEILY 350 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~~L~~L~ 350 (557)
+++.|+++...+.+|.+|++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544444555555555543
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.5e-17 Score=182.60 Aligned_cols=112 Identities=26% Similarity=0.360 Sum_probs=49.1
Q ss_pred CCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEE
Q 042089 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
.+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 3444444444444443 33333334444444444444444 34444444444444444444444 334444444444444
Q ss_pred EcCCCcCCCCcchhhccCCCCcEEEccCcccccccc
Q 042089 326 LMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~ 361 (557)
+|++|.++ .+|..|+.+++|++|+|++|.+++.+|
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 44444443 334444444444444444444444433
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.5e-16 Score=140.62 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=94.6
Q ss_pred CCCcEEEcCCCcCC-CCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeC
Q 042089 320 SYLDVLLMSKNHLE-GNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL 398 (557)
Q Consensus 320 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 398 (557)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. +.+..+++|++|++++|++++.+|..+.++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34555555555554 44555555566666666666666544 44446777777777777777667777777888888888
Q ss_pred CCCccccc-CCccccCCCCccEEEcCCCcccccCC---ccccCCCCCCEEEccCCcCcCCcCc
Q 042089 399 RDNKFFGR-IPHQINKHSELRVLLLRGNYLQGEIP---IALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 399 ~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip---~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||+++|.+. .+|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 88888653 22677888888888888888885554 47788888888888888876 4443
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.8e-17 Score=182.12 Aligned_cols=183 Identities=26% Similarity=0.272 Sum_probs=124.0
Q ss_pred ccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhcc
Q 042089 263 HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 342 (557)
Q Consensus 263 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 342 (557)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34667788999999999999998 77777889999999999999999 88999999999999999999999 78999999
Q ss_pred CCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCC-CcEEeCCCCcccccCCccccCCCCccEE
Q 042089 343 FRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTE-LLTLDLRDNKFFGRIPHQINKHSELRVL 420 (557)
Q Consensus 343 l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L 420 (557)
+++|++|+|++|.++ .+|..+ .+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.. |+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 999999999999997 556544 8999999999999999999988866432 235789999999988864 4556
Q ss_pred EcCCC--------cccccCCccccCCCCCCEEEccCCcCcCCc
Q 042089 421 LLRGN--------YLQGEIPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 421 ~L~~N--------~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
+++.| .+.+..+..+..+..++...++.|-+.+..
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp -------------------------------------CCCGGG
T ss_pred EeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 66666 344444555667778888889999886433
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.4e-16 Score=137.70 Aligned_cols=127 Identities=21% Similarity=0.216 Sum_probs=79.1
Q ss_pred CCcEEEcCCCcCC-CCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCC
Q 042089 321 YLDVLLMSKNHLE-GNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 321 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~ 399 (557)
+++.|++++|.++ +.+|..+..+++|++|++++|.+++. +.+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3444444444444 34444444555555555555555443 333356666666666666666567666677777777777
Q ss_pred CCccccc-CCccccCCCCccEEEcCCCcccccCC---ccccCCCCCCEEEccC
Q 042089 400 DNKFFGR-IPHQINKHSELRVLLLRGNYLQGEIP---IALCQLQKLRILDLSH 448 (557)
Q Consensus 400 ~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip---~~l~~l~~L~~Ldls~ 448 (557)
+|++++. .|..++.+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777653 34667777777777777777776554 4677777888877753
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.8e-16 Score=139.48 Aligned_cols=133 Identities=23% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCcCEEeCCCCCCc-ccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 4 KNLTELDLRENNLE-GQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+| ..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEE
Confidence 55667777777666 56666666666777777777666644 566666667777777776665455 234445555555
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCCCcC--hhhhCCCCCcEEEccCCcCcCCCc--HHHhhcCCCCCEEEcc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNFP--TWLMQNNTNLEVLRLS 158 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip--~~l~~~~~L~~L~Ls~n~l~~~~p--~~~~~~l~~L~~L~L~ 158 (557)
++++| .+..+| ..+..+++|++|++++|.+++..+ ...+..+++|++|+++
T Consensus 101 ~Ls~N-------------------------~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 101 NLSGN-------------------------KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ECBSS-------------------------SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred eccCC-------------------------ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 55554 444443 455666666666666666663333 1233466777777776
Q ss_pred CccccC
Q 042089 159 NNSFSG 164 (557)
Q Consensus 159 ~n~l~~ 164 (557)
+|.+..
T Consensus 156 ~n~~~~ 161 (168)
T 2ell_A 156 DREDQE 161 (168)
T ss_dssp ETTSCB
T ss_pred CCChhh
Confidence 666543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=4.7e-16 Score=154.95 Aligned_cols=261 Identities=15% Similarity=0.183 Sum_probs=157.4
Q ss_pred CCCcCEEeCCCCCCc--ccCCccCCCCCCCCEEECCCCcCCccCchhccC--------CCCCCEEeCcCcccCcccChhh
Q 042089 3 LKNLTELDLRENNLE--GQLPWRLSDLTGLKVFDISSNQLSGNLPSVIAN--------LTSLEYLVLSDNNFQGEFPLSL 72 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~g~~p~~~ 72 (557)
+++|++|||++|.+. ...+..+. .++.+.+..|.+. +..|.+ |++|++|+|++ .++ .|+...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCcccccc---ccccccccccccC---HHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 678999999999987 22222222 2444545444221 234555 78888888877 666 677777
Q ss_pred hcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCC----CCcC-hhhhCCCCCc-EEEccCCcCcCCCcHHHh
Q 042089 73 LTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL----KVIP-SFLLHQYNLK-FLDLSSNKLVGNFPTWLM 146 (557)
Q Consensus 73 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l----~~ip-~~l~~~~~L~-~L~Ls~n~l~~~~p~~~~ 146 (557)
|.+|++|+.+++.+|... .++..++..+.++.++....... ..+. ..+..|.+|+ .+.+... +.++..++
T Consensus 120 F~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~ 195 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIM 195 (329)
T ss_dssp TTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHH
T ss_pred hhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHh
Confidence 888888888888777665 44555666666777666655211 1121 2244556666 4444432 24444444
Q ss_pred hc---CCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCC
Q 042089 147 QN---NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMK 223 (557)
Q Consensus 147 ~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 223 (557)
.. ..+++.+.+.++-.......-...+++|+.+++++|+++ .+|...+..|++|+.+++.+| +...-+.+|.+++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 33 344555555443211100000013567777777777766 666666666777777777776 5545556677777
Q ss_pred CCc-EEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceec
Q 042089 224 ELF-LLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279 (557)
Q Consensus 224 ~L~-~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (557)
+|+ .+++.+ .++ .++...|.+|++|+.++++.|.+....+..|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777 777776 454 666667777778888887777776666667777777777653
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.4e-15 Score=137.40 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=75.5
Q ss_pred cEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcch-hhccCCCCcEEEccCccccccccccc-CCCCccEEEccC
Q 042089 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV-QINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQK 376 (557)
Q Consensus 299 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~ 376 (557)
+++++++|.++ .+|..+.. .+++|++++|++++..+. .+..+++|++|++++|.+++..|..+ .+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34455554442 33433322 455555555555544332 24555555555555555555444333 555666666666
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 432 (557)
|++++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 66665555566666777777777777776667777777777777777777765544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.2e-15 Score=133.35 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=75.4
Q ss_pred CCCcEEEccCCccc-CccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEE
Q 042089 296 HGLVVLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLY 373 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~ 373 (557)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|... .+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 45555555555555555555555544 445555666666666666655455444 366666666
Q ss_pred ccCCccccc-chhhhhcCCCCcEEeCCCCcccccCC---ccccCCCCccEEEcC
Q 042089 374 LQKNALSGQ-IPSTLLRSTELLTLDLRDNKFFGRIP---HQINKHSELRVLLLR 423 (557)
Q Consensus 374 L~~n~l~~~-~p~~l~~~~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~ 423 (557)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666642 34566677777777777777765544 456667777777665
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=4.7e-14 Score=143.69 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=108.4
Q ss_pred hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccC
Q 042089 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQK 200 (557)
Q Consensus 121 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~ 200 (557)
+..|.+|+.+++..|+++ .++...|. +++|+.+.+..+ ++......+..+++|+.+++..+ ++ .++...+.. .+
T Consensus 176 F~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~ 249 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SG 249 (401)
T ss_dssp TTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CC
T ss_pred hhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CC
Confidence 444444555555444444 34444442 345555555422 33332233444455555555443 22 333333332 45
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeee----eecCcccccCCCCCcEEeccCCccccccCccccCcccccc
Q 042089 201 LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS----GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276 (557)
Q Consensus 201 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (557)
|+.+.+ .+.++..-..+|.+|++|+.+++.++.+. ..++...|.+|++|+.+++.. .+...-...+..|++|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 666655 23344333455666666666666655442 135566666777777777763 344444455666777777
Q ss_pred eecccccccccccccccCCCCCcEEEccCCcccCccCccccCCC-CCcEEEcCCCc
Q 042089 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS-YLDVLLMSKNH 331 (557)
Q Consensus 277 L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~l~~n~ 331 (557)
+.+..+ ++......|..+ +|+.+++.+|......+..|.+++ .++.+.+..+.
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 777544 444445566677 777777777766655556666663 56777766544
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1e-14 Score=131.34 Aligned_cols=131 Identities=22% Similarity=0.222 Sum_probs=96.6
Q ss_pred cEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCC
Q 042089 323 DVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401 (557)
Q Consensus 323 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N 401 (557)
+.+++++++++ .+|..+ .++|+.|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34555555544 233222 2456666666666665444433 5677777777777777656666788899999999999
Q ss_pred cccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 402 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9987777778889999999999999996666667889999999999999998776
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=131.59 Aligned_cols=110 Identities=26% Similarity=0.292 Sum_probs=80.9
Q ss_pred CCCcEEEccCccccccccc-ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEc
Q 042089 344 RQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL 422 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 422 (557)
++++.|++++|.++ .+|. +..+++|++|++++|++++..+..|.++++|++|++++|++++..|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34555555555554 2332 225666666666666776666667788888888888888888777778888888888888
Q ss_pred CCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 423 RGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 423 ~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++|++++..+..+..+++|+.|++++|++.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 88888866566788888999999999988754
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=9.9e-14 Score=141.66 Aligned_cols=330 Identities=12% Similarity=0.052 Sum_probs=228.4
Q ss_pred CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCC
Q 042089 20 LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI 99 (557)
Q Consensus 20 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 99 (557)
-..+|.+|++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++ .|+...+.++++|+.+.+..+- ..+...++.
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l--~~i~~~aF~ 137 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML--KSIGVEAFK 137 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC--CEECTTTTT
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce--eeecceeee
Confidence 4467899999999999854 66555678999999999999865 55 6777788899999887665432 122333444
Q ss_pred CCCcccEEECCCCCCCCc-ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccE
Q 042089 100 PTFQLKVLQLPNCSLKVI-PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 178 (557)
.+..++...... ...+ ...+..|++|+.+.+.++. . .++...|.+|++|+.+.+..+ ++......+..+..|+.
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 444333332222 2222 2457788999999997653 3 566677778999999988766 44343355667888888
Q ss_pred EECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCC
Q 042089 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSEN 258 (557)
Q Consensus 179 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n 258 (557)
+.+..+... +....+ ....|+.+.+... ++..-...+..+..++.+.+..+.. .+....+..+..++.+.....
T Consensus 213 i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSS
T ss_pred eecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCce
Confidence 887765432 222232 3578888887653 3323345678889999999887654 456667778889998888766
Q ss_pred ccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 259 NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
.+. ...+..+.+|+.+.+.++ ++......|..|.+|+.+++..+ ++..-..+|.+|++|+.+.+..+ ++.....
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 442 235667888999888765 55445667888999999999754 66556778899999999999876 6656677
Q ss_pred hhccCCCCcEEEccCcccccccccccCCCCccEE
Q 042089 339 QINNFRQLEILYLSENRLFGSIASFLNLSSIMHL 372 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L 372 (557)
+|.+|.+|+.+++..+--.. --.+.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKRLEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGGGGGG-GGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCCCEEh-hheecCCCCCcEE
Confidence 89999999999998653221 1234477777764
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=3.3e-13 Score=137.78 Aligned_cols=332 Identities=12% Similarity=0.059 Sum_probs=237.2
Q ss_pred CCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh
Q 042089 40 LSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS 119 (557)
Q Consensus 40 l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~ 119 (557)
++.+-..+|.+|++|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ...+...++..+..|+.+.+..+ +..+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecc
Confidence 44445578999999999999865 66 788888999999999999754 23455567788888988877654 433433
Q ss_pred -hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhc
Q 042089 120 -FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVL 198 (557)
Q Consensus 120 -~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l 198 (557)
.+..+..++........ .+....|.+|++|+.+.+.++. .......+..+.+|+.+.+..+ ++ .++...+..+
T Consensus 134 ~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~ 207 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC 207 (394)
T ss_dssp TTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred eeeecccccccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence 34444433333332222 3445557799999999998654 3333355678889999999876 33 5666666678
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
..|+.+.+..+... +........+|+.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+.
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEE
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceec
Confidence 89998888765432 33344556789999887543 2 566667788999999999876432 3345677788888887
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
.....+. ...+..+.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++..-..+|.+|.+|+.+++..+ ++
T Consensus 283 ~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~- 355 (394)
T 4fs7_A 283 YGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR- 355 (394)
T ss_dssp ECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-
T ss_pred cCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-
Confidence 7765432 346778999999999765 55555678999999999999754 66556778999999999999876 43
Q ss_pred ccc--cccCCCCccEEEccCCcccccchhhhhcCCCCcEE
Q 042089 359 SIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396 (557)
Q Consensus 359 ~i~--~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 396 (557)
.++ .+.+|.+|+.+++..+ ++ .+...|.+|++|+.+
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 333 3448999999999765 33 345678899998875
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.3e-14 Score=128.84 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=92.1
Q ss_pred CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEe
Q 042089 318 NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLD 397 (557)
Q Consensus 318 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 397 (557)
++.+|+.|++++|+++. +|......++|++|++++|.+++. +.+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 44455555555555552 233222223677777777776653 4455677788888888888755445558888899999
Q ss_pred CCCCcccccCCc--cccCCCCccEEEcCCCcccccCCcc----ccCCCCCCEEEccCCcCc
Q 042089 398 LRDNKFFGRIPH--QINKHSELRVLLLRGNYLQGEIPIA----LCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 398 L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~g~ip~~----l~~l~~L~~Ldls~N~l~ 452 (557)
+++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999884 5665 7888889999999999988 55654 788999999999998875
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=2.5e-13 Score=138.37 Aligned_cols=265 Identities=12% Similarity=0.137 Sum_probs=199.1
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
..++.+.+.. .++..-..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .++ .|+...|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeee
Confidence 4566666665 3443445677775 7999999877 665656678775 799999986 565 67777899999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 162 (557)
+..+... .++...+. +.+|+.+.+..+ +..|+. .+..|++|+.+++..+ ++ .++...|.+ .+|+.+.+. +.+
T Consensus 187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp CTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred cCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence 9887665 34444444 689999999854 766654 5778889999999875 44 667777755 789999994 445
Q ss_pred cCcccCCcccCCCccEEECcCCcCc----CCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeee
Q 042089 163 SGILQLPKVKHDFLRHLDISNNNLI----GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238 (557)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 238 (557)
+......+..+++|+.+++.++.+. ..++...+..|++|+.+++.. .++..-..+|.+|++|+.+.+..+ ++ .
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-Q 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-E
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-E
Confidence 5555567778999999999887654 236677777899999999984 576555678899999999999765 54 7
Q ss_pred cCcccccCCCCCcEEeccCCccccccCccccCcc-cccceeccccccc
Q 042089 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT-QLRGLYLKNNHFT 285 (557)
Q Consensus 239 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~ 285 (557)
++...|.+| +|+.+++.+|.........+..++ .++.+.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 778888899 999999999987665556666664 7888888876543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=6.9e-14 Score=125.83 Aligned_cols=113 Identities=22% Similarity=0.239 Sum_probs=67.0
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeC
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL 398 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 398 (557)
++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555555554444444555555555555555554333332 5566666666666666555555666777777777
Q ss_pred CCCcccccCCccccCCCCccEEEcCCCcccccCC
Q 042089 399 RDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 399 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 432 (557)
++|++++..+..+..+++|+.|++++|.+++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7777765444445667777777777777765544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=9.6e-17 Score=147.54 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=78.7
Q ss_pred cccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCC
Q 042089 315 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTEL 393 (557)
Q Consensus 315 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L 393 (557)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|... .+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44455555555555555554 34 5555566666666666655 334333 44566666666666664 34 46666777
Q ss_pred cEEeCCCCcccccCC-ccccCCCCccEEEcCCCcccccCCcc----------ccCCCCCCEEEccCCcCc
Q 042089 394 LTLDLRDNKFFGRIP-HQINKHSELRVLLLRGNYLQGEIPIA----------LCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 394 ~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~----------l~~l~~L~~Ldls~N~l~ 452 (557)
++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|+.|| +|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777754222 35666777777777777777665542 67778888776 55554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2e-16 Score=145.41 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=94.8
Q ss_pred ccccceecccccccccccc------cccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCC
Q 042089 272 TQLRGLYLKNNHFTGKIKA------GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~------~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 345 (557)
..++.++++.+.++|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 55666666666666666665 44 5666666667777666666 45656666667
Q ss_pred CcEEEccCcccccccccccCCCCccEEEccCCcccccch-hhhhcCCCCcEEeCCCCcccccCCcc----------ccCC
Q 042089 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQ----------INKH 414 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~----------l~~l 414 (557)
|++|++++|.+++ +|.+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+
T Consensus 95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 7777777777665 4444466777777777777764322 46667777777777777776665542 5667
Q ss_pred CCccEEEcCCCccc
Q 042089 415 SELRVLLLRGNYLQ 428 (557)
Q Consensus 415 ~~L~~L~L~~N~l~ 428 (557)
++|+.|+ +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 7777776 55554
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.2e-13 Score=126.10 Aligned_cols=127 Identities=25% Similarity=0.278 Sum_probs=82.7
Q ss_pred cEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCC
Q 042089 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKN 377 (557)
Q Consensus 299 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n 377 (557)
+.+++++|.++ .+|..+. +.+++|++++|.++ .+|..+..+++|++|++++|.+++..+..+ .+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 3343332 35666666666665 455566666666666666666665444433 6667777777777
Q ss_pred cccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 378 ALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 378 ~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
++++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666677777888888888888875555567777888888888887764
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=3.9e-14 Score=127.40 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCc
Q 042089 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103 (557)
Q Consensus 24 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 103 (557)
+.++.+|++|++++|+++ .+|......++|++|++++|.+++. + .+..+++|++|++++|.+.+ ++...+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~--~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D--GFPLLRRLKTLLVNNNRICR-IGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C--CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-c--ccccCCCCCEEECCCCcccc-cCcchhhcCCC
Confidence 455666666666666666 3343222233666666666666642 2 35666666666666666553 23222355667
Q ss_pred ccEEECCCCCCCCcCh--hhhCCCCCcEEEccCCcCcCCCcHH---HhhcCCCCCEEEccCcccc
Q 042089 104 LKVLQLPNCSLKVIPS--FLLHQYNLKFLDLSSNKLVGNFPTW---LMQNNTNLEVLRLSNNSFS 163 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~--~l~~~~~L~~L~Ls~n~l~~~~p~~---~~~~l~~L~~L~L~~n~l~ 163 (557)
|++|++++|.++.+|. .+..+++|++|++++|.++ .+|.. ++..+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7778888888877776 7788888899999888887 55654 3458888999988888754
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=7.1e-13 Score=118.26 Aligned_cols=110 Identities=23% Similarity=0.196 Sum_probs=94.3
Q ss_pred CCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 345 QLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
..+.+++++|.++. +|... .+.+++|+|++|++++..|..+.++++|++|++++|++++..|..+..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35678888888765 44333 37889999999999988888999999999999999999977777789999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 425 N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..+..+..+++|+.|++++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99997777789999999999999999997654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.7e-12 Score=114.90 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=90.8
Q ss_pred CcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCC
Q 042089 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 425 (557)
-+.+++++|.+. .+|... .++|++|+|++|++++..|..+.++++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~-~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCC-ccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 367788888775 445433 278899999999999888889999999999999999998766667789999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcCCc
Q 042089 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 426 ~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
++++..+..+..+++|+.|++++|++....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999766666999999999999999998653
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.1e-13 Score=139.71 Aligned_cols=160 Identities=22% Similarity=0.162 Sum_probs=76.6
Q ss_pred ccccceecccccccccccccc----c-CCCCCcEEEccCCcccCccCcccc-CCCCCcEEEcCCCcCCCCcchhhc----
Q 042089 272 TQLRGLYLKNNHFTGKIKAGL----L-NSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMSKNHLEGNIPVQIN---- 341 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l----~-~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~~n~l~~~~~~~l~---- 341 (557)
+.|+.|++++|.++......+ . ..++|++|+|++|.++......+. .+++|+.|++++|.+++.....++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666654322222 1 124666666666665543222221 234556666666665543333331
Q ss_pred -cCCCCcEEEccCcccccc----cccc-cCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCccccc----C
Q 042089 342 -NFRQLEILYLSENRLFGS----IASF-LNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGR----I 407 (557)
Q Consensus 342 -~l~~L~~L~L~~n~l~~~----i~~~-~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~----~ 407 (557)
..++|+.|+|++|.++.. ++.. ..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234556666665555431 1111 1345555555555555432 234444455555555555555432 2
Q ss_pred CccccCCCCccEEEcCCCcccccC
Q 042089 408 PHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 408 p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
+..+..+++|++|+|++|.+++..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHH
Confidence 222333455555555555555433
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.2e-11 Score=110.72 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=68.8
Q ss_pred CEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecC
Q 042089 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86 (557)
Q Consensus 7 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~ 86 (557)
+.++++++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|...+.+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~--------- 81 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLT--------- 81 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT---------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcc---------
Confidence 56777777774 5666554 67777777777777766777777777777777777776 34544444444
Q ss_pred ccCcccccCCCCCCCCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCC
Q 042089 87 VSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGN 140 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~ 140 (557)
+|++|++++|.+..+|.. +..+++|++|++++|.+...
T Consensus 82 ----------------~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 82 ----------------QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ----------------TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ----------------hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 455555555555455543 66677777777777777643
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=1.1e-10 Score=119.11 Aligned_cols=328 Identities=12% Similarity=0.129 Sum_probs=158.0
Q ss_pred cCCCCC-CCCEEECCCCcCCccCchhccCCCCCCEEeCcCcc---cCcccChhhhcCCCCCcEEEecCccCcccccCCCC
Q 042089 23 RLSDLT-GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN---FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENW 98 (557)
Q Consensus 23 ~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 98 (557)
+|.+++ .|+.+.+..+ ++.+-..+|.+|++|+.+.+..|. ++ .|+...|.++.+|+.+.+..+- ..+...++
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~~--~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDSV--TEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTTC--SEECTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCcc--ceehhhhh
Confidence 455553 4666666543 443444566666666666665543 33 4444555555555554443221 12233344
Q ss_pred CCCCcccEEECCCCCCCCcC-hhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCcc
Q 042089 99 IPTFQLKVLQLPNCSLKVIP-SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177 (557)
Q Consensus 99 ~~~~~L~~L~L~~n~l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 177 (557)
..+.+|+.+.+..+ +..|+ ..+..|.+|+.+.+..+ ++ .+....| ...+|+.+.+..+... .....+..+..++
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccc-cccceeEEEECCcccc-cccchhhhccccc
Confidence 44555555555432 22222 23344455555555433 22 2333333 2334555444332211 1112233333444
Q ss_pred EEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccC
Q 042089 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257 (557)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 257 (557)
.......... .+...+........ .....+.....+..+.+... +. .+....|..|..|+.+.+..
T Consensus 209 ~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 209 TITSDSESYP-AIDNVLYEKSANGD-----------YALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp EEEECCSSSC-BSSSCEEEECTTSC-----------EEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCT
T ss_pred eecccccccc-cccceeeccccccc-----------ccccccccccccceEEcCCc-ce-EcccceeeecccccEEeccc
Confidence 4333322211 01100000000000 00001112233344444322 22 44455566777777777765
Q ss_pred CccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc
Q 042089 258 NNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 337 (557)
Q Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~ 337 (557)
+.. ......+.++++|+.+.+.. .++......|..|.+|+.+++..+ ++..-..+|.+|++|+.+.+..+ ++..-.
T Consensus 275 ~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 432 12234556777777777753 344344556777888888888754 55555667888888888888654 555566
Q ss_pred hhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcc
Q 042089 338 VQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNAL 379 (557)
Q Consensus 338 ~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l 379 (557)
.+|.+|.+|+.+++.++... +..+..+..|+.+.+..+.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence 78888999999988887543 23344677788877766654
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=1.2e-10 Score=118.64 Aligned_cols=323 Identities=11% Similarity=0.100 Sum_probs=187.4
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCc---CCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQ---LSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
.|+.+.+..+ ++..-..+|.+|++|+.+.++.|. ++..-..+|.+|.+|+.+.+..+ ++ .++...+.++.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhccccc
Confidence 4888888764 554556789999999999998764 55455678999999999998765 44 677778999999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
+.+...- ..+....+..+..|+.+.+..+ +..|.........|+.+.+..+.. .+....+.++..++........
T Consensus 142 i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 142 VTIPEGV--TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--RIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--EECTTTTTTCTTCCEEEECCSS
T ss_pred cccccee--eeecccceecccccccccccce-eeEeccccccccceeEEEECCccc--ccccchhhhccccceecccccc
Confidence 9996543 3455567788999999999765 666666666677899999876532 3334445688999988876655
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCc
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 241 (557)
........+........-.... .....+..+.+.. .++..-..+|.+++.|+.+.+..+.. .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~ 281 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRY------------PSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGT 281 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEEC------------CTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECT
T ss_pred cccccceeeccccccccccccc------------ccccccceEEcCC-cceEcccceeeecccccEEecccccc--eecC
Confidence 4332111111111000000000 0011222222221 12212233455556666666554432 3444
Q ss_pred ccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCC
Q 042089 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321 (557)
Q Consensus 242 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~ 321 (557)
..+.+|..|+.+.+.. .+.......+.++++|+.+.+.++ ++......|..|.+|+.+.+..+ ++..-..+|.+|++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 4555566666666542 232222334555666666666543 33333456666777777777543 44444556777777
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCccc
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 356 (557)
|+.+++.++... ..++..+..|+.+.+..+.+
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 777777765432 23455667777776665543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1e-13 Score=139.90 Aligned_cols=158 Identities=19% Similarity=0.139 Sum_probs=70.2
Q ss_pred CCCcEEEccCCcccCccCccccC-----CCCCcEEEcCCCcCCCCcchhhc-cCCCCcEEEccCcccccccccc----c-
Q 042089 296 HGLVVLDISNNLLSGHIPCWIGN-----FSYLDVLLMSKNHLEGNIPVQIN-NFRQLEILYLSENRLFGSIASF----L- 364 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~i~~~----~- 364 (557)
+.|+.|++++|.++......+.. .+.|++|++++|.+++.....+. .+++|+.|+|++|.++...... .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555554322222211 14555555555555433222221 2344555555555554321111 0
Q ss_pred -CCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCcccccC----CccccCCCCccEEEcCCCccccc----C
Q 042089 365 -NLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRI----PHQINKHSELRVLLLRGNYLQGE----I 431 (557)
Q Consensus 365 -~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~g~----i 431 (557)
..+.|++|+|++|.+++. ++..+..+++|++|+|++|++++.. +..+...++|+.|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234555555555555431 3333344555555555555554321 33334444555555555555432 2
Q ss_pred CccccCCCCCCEEEccCCcCcC
Q 042089 432 PIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g 453 (557)
+..+..+++|+.|||++|++++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2233344555555555555543
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.6e-11 Score=109.41 Aligned_cols=86 Identities=23% Similarity=0.222 Sum_probs=40.2
Q ss_pred ccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEc
Q 042089 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 351 (557)
+++++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444444444555444444444444444444444444444444443434444444555554
Q ss_pred cCcccc
Q 042089 352 SENRLF 357 (557)
Q Consensus 352 ~~n~l~ 357 (557)
++|++.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=2.2e-10 Score=114.66 Aligned_cols=102 Identities=23% Similarity=0.236 Sum_probs=63.9
Q ss_pred EEEcCCC-cCCCCcchhhccCCCCcEEEccC-ccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 324 VLLMSKN-HLEGNIPVQINNFRQLEILYLSE-NRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 324 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
.++.+++ +++ .+|. +..+++|+.|+|++ |.+.+..+..+ .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 666 3566 66667777777764 66665554433 666667777777766666666666666666666666
Q ss_pred CcccccCCccccCCCCccEEEcCCCccc
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
|+|++..+..+..++ |+.|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666644444444444 666666666665
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=7.6e-10 Score=110.65 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=89.3
Q ss_pred cEEEccCC-cccCccCccccCCCCCcEEEcCC-CcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEcc
Q 042089 299 VVLDISNN-LLSGHIPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQ 375 (557)
Q Consensus 299 ~~L~Ls~n-~l~~~~p~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~ 375 (557)
..++.+++ .+++ +|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..+ .+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 7875 788 99999999999996 99998888899999999999999999999887665 89999999999
Q ss_pred CCcccccchhhhhcCCCCcEEeCCCCcccc
Q 042089 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFG 405 (557)
Q Consensus 376 ~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~ 405 (557)
+|+|++..+..+..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999965555555555 9999999999864
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2.5e-08 Score=100.83 Aligned_cols=302 Identities=11% Similarity=0.100 Sum_probs=146.2
Q ss_pred CCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCc
Q 042089 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103 (557)
Q Consensus 24 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 103 (557)
+....+|+.+.+... ++.+-..+|.+|.+|+.++|..+ ++ .|+..+|.++ +|+.+.+..+- ..+...++.. .+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~l--~~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMERV--KKFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTTC--CEECTTTTTT-CC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCcee--eEeccceecc-CC
Confidence 444456666666543 44344456677777777777644 44 5555556655 45555543321 1222223322 25
Q ss_pred ccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcC
Q 042089 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 183 (557)
|+.+.+..+ +..+........+++.+.+..+ ++ .+....+..+..++...+..+........... .
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~---------- 180 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-Y---------- 180 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE-E----------
T ss_pred cccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee-c----------
Confidence 555555433 2223322222234444444332 11 22222233455555554443321110000000 0
Q ss_pred CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 184 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
+. .......+ ..+..+..+.+.... .......+..+..|+.+.+..+- . .+....+..+..|+.+.+..+ ++..
T Consensus 181 ~~-~~~~~~~~-~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I 254 (379)
T 4h09_A 181 NK-NKTILESY-PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSI 254 (379)
T ss_dssp ET-TSSEEEEC-CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEE
T ss_pred cc-ccceeccc-cccccccccccccce-eEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEe
Confidence 00 00000011 112333333333221 11233345556666666665442 2 344455556666777666554 3323
Q ss_pred cCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccC
Q 042089 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343 (557)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 343 (557)
-...+..+.+|+.+.+..+ ++......|..|.+|+.+.+.++.++..-...|.+|.+|+.+.+..+ ++..-..+|.+|
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 3344556666666666543 33233445667777777777776666555667777777777777643 444445667777
Q ss_pred CCCcEEEccCc
Q 042089 344 RQLEILYLSEN 354 (557)
Q Consensus 344 ~~L~~L~L~~n 354 (557)
.+|+.+.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 77777777554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2.9e-08 Score=100.40 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=63.0
Q ss_pred ccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc--cccCCCCccEEEccCCcccccchhhhhcCCCC
Q 042089 316 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTEL 393 (557)
Q Consensus 316 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~--~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L 393 (557)
+..+..++.+.+..+ +......++..+..|+.+.+..+ ++ .+. .+..+.+|+.+.+..+ +...-...|.+|++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccc
Confidence 333444444444322 22222334444555555555443 11 111 1124555555555432 332233455566666
Q ss_pred cEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCC
Q 042089 394 LTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 394 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
+.+.+.++.++.....+|.+|.+|+.+.|..+ ++..-..+|.+|.+|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66666666555444455666666666666543 44333456667777776666443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=3.4e-10 Score=113.15 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=71.1
Q ss_pred ccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc--cCCCCcEEEccC--cccccc--c-
Q 042089 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN--NFRQLEILYLSE--NRLFGS--I- 360 (557)
Q Consensus 288 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~--i- 360 (557)
+...+..++.|+.|++++|.-. .++. + .+++|+.|++..+.+.......++ .+++|+.|+|+. |...+. +
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3344556677888888776211 2232 2 266777887777776654444444 577788777753 221111 1
Q ss_pred ---cccc--CCCCccEEEccCCcccccchhhhh---cCCCCcEEeCCCCcccccC----CccccCCCCccEEEcCCCccc
Q 042089 361 ---ASFL--NLSSIMHLYLQKNALSGQIPSTLL---RSTELLTLDLRDNKFFGRI----PHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 361 ---~~~~--~~~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~ 428 (557)
+... .+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1111 345666666666665544333333 2345555555555554432 222233445555555555444
Q ss_pred c
Q 042089 429 G 429 (557)
Q Consensus 429 g 429 (557)
.
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=2.4e-09 Score=107.00 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred cCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc-ccc--CCCCccEEEccC--Cccccc----
Q 042089 312 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA-SFL--NLSSIMHLYLQK--NALSGQ---- 382 (557)
Q Consensus 312 ~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~-~~~--~~~~L~~L~L~~--n~l~~~---- 382 (557)
++..+..++.|+.|.+++|.-. .++. + .+++|+.|++..|.+..... ... .+++|++|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455667899999999987311 2333 3 37899999999988765322 222 689999999863 221111
Q ss_pred -chhhh--hcCCCCcEEeCCCCcccccCCcccc---CCCCccEEEcCCCccccc----CCccccCCCCCCEEEccCCcCc
Q 042089 383 -IPSTL--LRSTELLTLDLRDNKFFGRIPHQIN---KHSELRVLLLRGNYLQGE----IPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 383 -~p~~l--~~~~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
+...+ ..+++|++|++.+|.+++..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 12223 2478999999999999765554443 478999999999999875 3444566799999999999987
Q ss_pred CC
Q 042089 453 GS 454 (557)
Q Consensus 453 g~ 454 (557)
..
T Consensus 321 d~ 322 (362)
T 2ra8_A 321 DE 322 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=1.2e-08 Score=92.06 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred hhccCCCCcEEEccCc-ccccc----ccc-ccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCccccc--
Q 042089 339 QINNFRQLEILYLSEN-RLFGS----IAS-FLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGR-- 406 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n-~l~~~----i~~-~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~-- 406 (557)
.+...+.|+.|+|++| .+... +.. ....+.|++|+|++|.+.+. +...+...+.|++|+|++|+|++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 44321 111 11345666666666666542 445556667788888888887654
Q ss_pred --CCccccCCCCccEEEc--CCCccccc----CCccccCCCCCCEEEccCCcCc
Q 042089 407 --IPHQINKHSELRVLLL--RGNYLQGE----IPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 407 --~p~~l~~l~~L~~L~L--~~N~l~g~----ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
+...+...+.|++|+| ++|.++.. +...+...+.|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455566677888888 77887754 3345566688888888888875
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=4.6e-08 Score=88.08 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=57.3
Q ss_pred cccCCCCCcEEEccCC-cccCc----cCccccCCCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccccccc
Q 042089 291 GLLNSHGLVVLDISNN-LLSGH----IPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 291 ~l~~~~~L~~L~Ls~n-~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~i~ 361 (557)
.+...+.|++|+|++| .+... +...+...+.|++|++++|.+.+. +...+...+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~---------------- 94 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT---------------- 94 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS----------------
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCC----------------
Confidence 3444566666666666 55432 223333445555555555555432 2222333344
Q ss_pred cccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeC--CCCcccccC----CccccCCCCccEEEcCCCccc
Q 042089 362 SFLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDL--RDNKFFGRI----PHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 362 ~~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L--~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~ 428 (557)
|++|+|++|.+++. +...+...++|++|++ ++|.+++.. ...+...+.|+.|+|++|.+.
T Consensus 95 -------L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 95 -------LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -------CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -------cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44555555554432 3444555556666666 556664432 223334456666666666554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=5.1e-08 Score=92.43 Aligned_cols=66 Identities=32% Similarity=0.481 Sum_probs=30.4
Q ss_pred cCCCCcEEeCCCCcccc--cCCccccCCCCccEEEcCCCcccccCCccccCCC--CCCEEEccCCcCcCCcC
Q 042089 389 RSTELLTLDLRDNKFFG--RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQ--KLRILDLSHNKLNGSIP 456 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~--~L~~Ldls~N~l~g~ip 456 (557)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34445555555555544 3334444455555555555555433 1122222 55555555555555444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=2.2e-07 Score=87.97 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=33.5
Q ss_pred CCCCCCCEEECCCCcCCc--cCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCccc
Q 042089 25 SDLTGLKVFDISSNQLSG--NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR 92 (557)
Q Consensus 25 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~ 92 (557)
.++++|+.|+|++|++++ .+|..+..+++|++|+|++|.+++.-....+..+ +|++|++.+|.+.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccc
Confidence 345555566666665554 3344455555566666666555533111112222 555566655555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.7e-06 Score=74.72 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=59.3
Q ss_pred CCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCc-ccccCCccccCC----CCccEEEcCCCc-ccccCCccccCCC
Q 042089 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK-FFGRIPHQINKH----SELRVLLLRGNY-LQGEIPIALCQLQ 439 (557)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~g~ip~~l~~l~ 439 (557)
-..|++||+++|.+++.--..+..|++|++|+|++|. +++..-..++.+ ++|+.|+|++|. ++...-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467777777777766555566777788888887774 666555555553 468888888774 7765555667788
Q ss_pred CCCEEEccCCc
Q 042089 440 KLRILDLSHNK 450 (557)
Q Consensus 440 ~L~~Ldls~N~ 450 (557)
+|+.|++++++
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888876
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=1.1e-05 Score=70.86 Aligned_cols=82 Identities=10% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCcEEEccCCcccCccCccccCCCCCcEEEcCCCc-CCCCcchhhccC----CCCcEEEccCcc-ccc-ccccccCCCCc
Q 042089 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH-LEGNIPVQINNF----RQLEILYLSENR-LFG-SIASFLNLSSI 369 (557)
Q Consensus 297 ~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~-~i~~~~~~~~L 369 (557)
.|+.||++++.++..--..+..+++|++|++++|. +++..-..++.+ ++|+.|++++|. ++. .+.....+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333333444444444444442 333333333332 245555555543 332 11222244555
Q ss_pred cEEEccCCc
Q 042089 370 MHLYLQKNA 378 (557)
Q Consensus 370 ~~L~L~~n~ 378 (557)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00013 Score=65.17 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=63.4
Q ss_pred cCCCCcEEEccCc-ccccc----ccc-ccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCcccccCCc--
Q 042089 342 NFRQLEILYLSEN-RLFGS----IAS-FLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRIPH-- 409 (557)
Q Consensus 342 ~l~~L~~L~L~~n-~l~~~----i~~-~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~~p~-- 409 (557)
+-+.|+.|+|++| .+... +.. ...-+.|+.|+|++|++.+. +...+..-+.|++|+|++|.|++....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445666666553 44221 111 11345666666666666543 445555667788888888887654333
Q ss_pred --cccCCCCccEEEcCCC---cccc----cCCccccCCCCCCEEEccCCcC
Q 042089 410 --QINKHSELRVLLLRGN---YLQG----EIPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 410 --~l~~l~~L~~L~L~~N---~l~g----~ip~~l~~l~~L~~Ldls~N~l 451 (557)
.+..-+.|+.|+|++| .+.. .+.+.+..-+.|+.|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3344566888888754 3332 2344566667888888876654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=0.00027 Score=63.19 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=34.0
Q ss_pred cCCCCCcEEEccCC-cccC----ccCccccCCCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccc
Q 042089 293 LNSHGLVVLDISNN-LLSG----HIPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLF 357 (557)
Q Consensus 293 ~~~~~L~~L~Ls~n-~l~~----~~p~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 357 (557)
..-+.|+.|+|++| .+.. .+.+.+..-+.|+.|+|++|++.+. +...+..-+.|+.|+|+.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34556777777764 5542 2333444455666666666666533 2233333445555555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.006 Score=50.68 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=17.6
Q ss_pred CCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccC
Q 042089 53 SLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSN 89 (557)
Q Consensus 53 ~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~ 89 (557)
+|++|+|++|+|+ .+|...+..+++|++|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3455555555554 34444444555555555554443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0067 Score=50.40 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=42.2
Q ss_pred EEeCCCCccc-ccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 395 TLDLRDNKFF-GRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 395 ~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 6777777774 35665442 358888888888885555667888899999999998864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.37 E-value=16 Score=28.08 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=22.0
Q ss_pred CccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcC
Q 042089 21 PWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61 (557)
Q Consensus 21 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 61 (557)
..+|.+|++|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345666666666666554 3333345566666666665544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.73 E-value=16 Score=28.11 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=33.5
Q ss_pred cCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecC
Q 042089 39 QLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86 (557)
Q Consensus 39 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~ 86 (557)
.++.+-...|.+|++|+.+.+..+ ++ .|....|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 345455578888999999988875 44 56666788888888887754
Done!