BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042091
(1023 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 220/812 (27%), Positives = 354/812 (43%), Gaps = 126/812 (15%)
Query: 170 EEGWYDGASIAFAVFLVIVVTAISDYRQSLQFQNLNKEKRNI---QLEAMRGGKAVKISI 226
EE D + + V+++T Y Q + + + +N+ Q +R G+ + I+
Sbjct: 92 EEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINA 151
Query: 227 FDVVVGEIVPLRIGDQVPADGVLVTGHSLAIDESSMTG--ESKIVRKD--HKTP------ 276
+VVVG++V ++ GD++PAD +++ + +D SS+TG E + D ++ P
Sbjct: 152 EEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNI 211
Query: 277 -FLMSGCKVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRL-------NGVAT 328
F + C + T G + S G +TP+ + GVA
Sbjct: 212 AFFSTNC--VEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAV 269
Query: 329 FIGIXXXXXXXXXXXXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSR 388
F+G+ S F+ ++ VI ++ I
Sbjct: 270 FLGV----------------------------SFFILSLILEYTWLEAVIFLIGI----- 296
Query: 389 AIQVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTL 448
+V VPEGL VT+ L + ++M LV+ L A ET+GS +TICS KTGTL
Sbjct: 297 ------IVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTL 350
Query: 449 TLNEMTVVEAFIGRKKINPPDDSSQMHSI--------------VIYLLSEGIAQNTTGNV 494
T N MTV + +I+ D + + + L + + Q N+
Sbjct: 351 TQNRMTVAHMW-SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENL 409
Query: 495 FVPKDGEAVEVSGSPTEKAILSWAVKLGMKFDRVRSETTVLHVFPFNSEKKRGGVAVKRI 554
+ K V+G +E A+L +R T + PFNS K K
Sbjct: 410 PILKRA----VAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNP 465
Query: 555 NSEVHVH---WKGAAEMILASCTKYLDTDGQLQSIDGD-EDFFKAAVDEMAARSLRCVAI 610
N+ H KGA E IL C+ L G+ Q +D + +D F+ A E+ R +
Sbjct: 466 NTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGF 524
Query: 611 AYRFILDKW------------TLPEEELILLAIVGIKDPCRPGVKDAVKLCRDAGVKVRM 658
+ F+ D+ P + L + ++ + DP R V DAV CR AG+KV M
Sbjct: 525 CHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIM 584
Query: 659 VTGDNLQTAKAIALECGILGSDAEA--------NDP-----------NIIEGKVFRALSD 699
VTGD+ TAKAIA GI+ E N P ++ G + ++
Sbjct: 585 VTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTS 644
Query: 700 KEREKVAQEIT--VMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMG 757
++ + + + T V R+SP KL++V+ ++ ND+PA +ADIG+AMG
Sbjct: 645 EQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMG 704
Query: 758 IQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXX 817
I G++V+K+ +D+I+LDDNFAS+V V GR +F N++K I + LT
Sbjct: 705 IAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII 764
Query: 818 SSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRK------EPLITNIMW 871
++ +PL V +L ++L D + A++LA E +M R P K E LI+
Sbjct: 765 ANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYG 824
Query: 872 RNLIVQALYQ-VTVLLVLNFKGTSILHLEGER 902
+ ++QAL T ++L G +HL G R
Sbjct: 825 QIGMIQALGGFFTYFVILAENGFLPIHLLGLR 856
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 232 bits (591), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 254/977 (25%), Positives = 403/977 (41%), Gaps = 150/977 (15%)
Query: 123 FGSNTYPLKKGRSFLNFLWEAWQDXXXXXXXXXXXXXXXXXXKTEGVEEGWYDGASIAFA 182
+G N P ++G+S + E ++D EG E F
Sbjct: 36 YGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLAWFEEGEET--VTAFVEPFV 93
Query: 183 VFLVIVVTAISDYRQSLQFQNLNKEKRNIQLEAMRGGKAVKISI-----FDVVVGEIVPL 237
+ L+++ AI Q +N + + + E + +A + S+ D+V G+IV +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 238 RIGDQVPADGVLVTGHS--LAIDESSMTGES-------------KIVRKDHKTPFLMSGC 282
+GD+VPAD ++T S L +D+S +TGES + V +D K L SG
Sbjct: 154 AVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKN-MLFSGT 212
Query: 283 KVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIXXXXXXXXXX 342
+A + TE G + ++ ++TPLQ +L+ +
Sbjct: 213 NIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS-----KVISLI 267
Query: 343 XXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSRAIQVTIVVVAVPEG 402
GH ++++G A I V + V A+PEG
Sbjct: 268 CVAVWLINIGHFNDPVHGGSWIRG-----------------AIYYFKIAVALAVAAIPEG 310
Query: 403 LPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAFIGR 462
LP +T LA R+M A+VR L + ET+G + ICSDKTGTLT N+M+V + FI
Sbjct: 311 LPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIID 370
Query: 463 K-------------------------KINPPDDSSQ------MHSIVIYLLSEGIAQNTT 491
+ K + P S Q + +I + N T
Sbjct: 371 RIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDSSLDFNET 430
Query: 492 GNVFVPKDGEAVEVS-GSPTEKA-ILSWAVKLGMKFDRVRSETTVLH-------VFPFNS 542
++ K GEA E + + EK + + V+ K +R + +V+ F+
Sbjct: 431 KGIY-EKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSR 489
Query: 543 EKKRGGVAVKRINSEVHV----HWKGAAEMILASCTKYLDTDGQLQSIDG--DEDFFKAA 596
++K V S V KGA E ++ C Y+ + G E
Sbjct: 490 DRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVI 548
Query: 597 VDEMAAR-SLRCVAIAYR--------FILD---KWTLPEEELILLAIVGIKDPCRPGVKD 644
+ R +LRC+A+A R +LD K+ E +L + +VG+ DP R V
Sbjct: 549 KEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMG 608
Query: 645 AVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIEGKVFRALSDKEREK 704
+++LCRDAG++V M+TGDN TA AI GI G + + D G+ F L E+ +
Sbjct: 609 SIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVAD-RAYTGREFDDLPLAEQRE 667
Query: 705 VAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMGIQGTEVA 764
+ R P K +V+ L+ NDAPAL +A+IG+AMG GT VA
Sbjct: 668 ACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVA 726
Query: 765 KENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXXSSGDVPL 824
K S++++ DDNF+++V V GR+++ N+++FI++ ++ L
Sbjct: 727 KTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEAL 786
Query: 825 NAVQLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRKEPLITN-IMWRNLIVQA----- 878
VQLLWVNL+ D L A AL PP +M R P KEPLI+ + +R + +
Sbjct: 787 IPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLISGWLFFRYMAIGGYVGAA 846
Query: 879 ---------LY-----QVTVLLVLNFKGTSILHLEGERRQHASDVKN------------T 912
LY VT + +F S +H+ D + T
Sbjct: 847 TVGAAAWWFLYAEDGPHVTYSQLTHFMKCS---------EHSPDFEGVDCEVFEAPQPMT 897
Query: 913 MIFNAFVLSQIFNEFNARKPDEINVFTGVTKNYLFMGIIGITCVLQIII--IEFLGKFTK 970
M + V ++ N N+ ++ V N +G IG++ L +I ++ L K
Sbjct: 898 MALSVLVTIEMCNALNSLSENQSLVRMPPWVNIWLVGSIGLSMSLHFLILYVDPLPMIFK 957
Query: 971 TVKLDWKLWLASIGIGL 987
LD WL + I L
Sbjct: 958 LQALDLYHWLMVLKISL 974
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 224/829 (27%), Positives = 353/829 (42%), Gaps = 110/829 (13%)
Query: 123 FGSNTYPLKKGRSFLNFLWEAWQDXXXXXXXXXXXXXXXXXXKTEGVEEGWYDGASIAFA 182
+G N P ++G+S + E ++D EG E F
Sbjct: 37 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEET--ITAFVEPFV 94
Query: 183 VFLVIVVTAISDYRQSLQFQNLNKEKRNIQLEAMRGGKAVKISI-----FDVVVGEIVPL 237
+ L+++ AI Q +N + + + E + +A + S+ D+V G+IV +
Sbjct: 95 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 154
Query: 238 RIGDQVPADGVLVTGHS--LAIDESSMTGES-------------KIVRKDHKTPFLMSGC 282
+GD+VPAD +++ S L +D+S +TGES + V +D K L SG
Sbjct: 155 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKN-MLFSGT 213
Query: 283 KVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIXXXXXXXXXX 342
+A ++TE G + ++ ++TPLQ +L+ +
Sbjct: 214 NIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS-----KVISLI 268
Query: 343 XXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSRAIQVTIVVVAVPEG 402
GH ++++G A I V + V A+PEG
Sbjct: 269 CVAVWLINIGHFNDPVHGGSWIRG-----------------AIYYFKIAVALAVAAIPEG 311
Query: 403 LPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAFIGR 462
LP +T LA R+M A+VR L + ET+G + ICSDKTGTLT N+M+V + FI
Sbjct: 312 LPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIID 371
Query: 463 K-------------------------KINPPDDSSQMHSIVIYLLSEGIAQNTTGNVFVP 497
K K + P S Q +V + +++ + F
Sbjct: 372 KVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD-FNE 430
Query: 498 KDGEAVEVSGSPTEKAILSWAVKLGMKFDRVRSETTVLHVFPFNS-----EKKRGGVAVK 552
G E G TE A+ + K+ + VR+ + V NS KK +
Sbjct: 431 TKG-VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFS 489
Query: 553 RINSEVHVHW----------------KGAAEMILASCTKYLDTDGQLQSIDG--DEDFFK 594
R + V+ KGA E ++ C Y+ + G E
Sbjct: 490 RDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILS 548
Query: 595 AAVDEMAAR-SLRCVAIAYR--------FILD---KWTLPEEELILLAIVGIKDPCRPGV 642
+ R +LRC+A+A R +LD ++ E +L + +VG+ DP R V
Sbjct: 549 VIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEV 608
Query: 643 KDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIEGKVFRALSDKER 702
+++LCRDAG++V M+TGDN TA AI GI G + E D G+ F L E+
Sbjct: 609 MGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD-RAYTGREFDDLPLAEQ 667
Query: 703 EKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMGIQGTE 762
+ + R P+ K +V+ L+ NDAPAL +A+IG+AMG GT
Sbjct: 668 REACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTA 726
Query: 763 VAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXXSSGDV 822
VAK S++++ DDNF+++V V GR+++ N+++FI++ ++
Sbjct: 727 VAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPE 786
Query: 823 PLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRKEPLITNIMW 871
L VQLLWVNL+ D L A AL PP +M R P KEPLI+ ++
Sbjct: 787 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLF 835
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 224/829 (27%), Positives = 353/829 (42%), Gaps = 110/829 (13%)
Query: 123 FGSNTYPLKKGRSFLNFLWEAWQDXXXXXXXXXXXXXXXXXXKTEGVEEGWYDGASIAFA 182
+G N P ++G+S + E ++D EG E F
Sbjct: 36 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEET--ITAFVEPFV 93
Query: 183 VFLVIVVTAISDYRQSLQFQNLNKEKRNIQLEAMRGGKAVKISI-----FDVVVGEIVPL 237
+ L+++ AI Q +N + + + E + +A + S+ D+V G+IV +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 238 RIGDQVPADGVLVTGHS--LAIDESSMTGES-------------KIVRKDHKTPFLMSGC 282
+GD+VPAD +++ S L +D+S +TGES + V +D K L SG
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKN-MLFSGT 212
Query: 283 KVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIXXXXXXXXXX 342
+A ++TE G + ++ ++TPLQ +L+ +
Sbjct: 213 NIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS-----KVISLI 267
Query: 343 XXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSRAIQVTIVVVAVPEG 402
GH ++++G A I V + V A+PEG
Sbjct: 268 CVAVWLINIGHFNDPVHGGSWIRG-----------------AIYYFKIAVALAVAAIPEG 310
Query: 403 LPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAFIGR 462
LP +T LA R+M A+VR L + ET+G + ICSDKTGTLT N+M+V + FI
Sbjct: 311 LPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIID 370
Query: 463 K-------------------------KINPPDDSSQMHSIVIYLLSEGIAQNTTGNVFVP 497
K K + P S Q +V + +++ + F
Sbjct: 371 KVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD-FNE 429
Query: 498 KDGEAVEVSGSPTEKAILSWAVKLGMKFDRVRSETTVLHVFPFNS-----EKKRGGVAVK 552
G E G TE A+ + K+ + VR+ + V NS KK +
Sbjct: 430 TKG-VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFS 488
Query: 553 RINSEVHVHW----------------KGAAEMILASCTKYLDTDGQLQSIDG--DEDFFK 594
R + V+ KGA E ++ C Y+ + G E
Sbjct: 489 RDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILS 547
Query: 595 AAVDEMAAR-SLRCVAIAYR--------FILD---KWTLPEEELILLAIVGIKDPCRPGV 642
+ R +LRC+A+A R +LD ++ E +L + +VG+ DP R V
Sbjct: 548 VIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEV 607
Query: 643 KDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIEGKVFRALSDKER 702
+++LCRDAG++V M+TGDN TA AI GI G + E D G+ F L E+
Sbjct: 608 MGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD-RAYTGREFDDLPLAEQ 666
Query: 703 EKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMGIQGTE 762
+ + R P+ K +V+ L+ NDAPAL +A+IG+AMG GT
Sbjct: 667 REACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTA 725
Query: 763 VAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXXSSGDV 822
VAK S++++ DDNF+++V V GR+++ N+++FI++ ++
Sbjct: 726 VAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPE 785
Query: 823 PLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRKEPLITNIMW 871
L VQLLWVNL+ D L A AL PP +M R P KEPLI+ ++
Sbjct: 786 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLF 834
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 223/829 (26%), Positives = 352/829 (42%), Gaps = 110/829 (13%)
Query: 123 FGSNTYPLKKGRSFLNFLWEAWQDXXXXXXXXXXXXXXXXXXKTEGVEEGWYDGASIAFA 182
+G N P ++G+S + E ++D EG E F
Sbjct: 36 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEET--ITAFVEPFV 93
Query: 183 VFLVIVVTAISDYRQSLQFQNLNKEKRNIQLEAMRGGKAVKISI-----FDVVVGEIVPL 237
+ L+++ AI Q +N + + + E + +A + S+ D+V G+IV +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 238 RIGDQVPADGVLVTGHS--LAIDESSMTGES-------------KIVRKDHKTPFLMSGC 282
+GD+VPAD +++ S L +D+S +TGES + V +D K L SG
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKN-MLFSGT 212
Query: 283 KVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIXXXXXXXXXX 342
+A ++TE G + ++ ++TPLQ +L+ +
Sbjct: 213 NIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS-----KVISLI 267
Query: 343 XXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSRAIQVTIVVVAVPEG 402
GH ++++G A I V + V A+PEG
Sbjct: 268 CVAVWLINIGHFNDPVHGGSWIRG-----------------AIYYFKIAVALAVAAIPEG 310
Query: 403 LPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAFIGR 462
LP +T LA R+M A+VR L + ET+G + ICS KTGTLT N+M+V + FI
Sbjct: 311 LPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFIID 370
Query: 463 K-------------------------KINPPDDSSQMHSIVIYLLSEGIAQNTTGNVFVP 497
K K + P S Q +V + +++ + F
Sbjct: 371 KVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD-FNE 429
Query: 498 KDGEAVEVSGSPTEKAILSWAVKLGMKFDRVRSETTVLHVFPFNS-----EKKRGGVAVK 552
G E G TE A+ + K+ + VR+ + V NS KK +
Sbjct: 430 TKG-VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFS 488
Query: 553 RINSEVHVHW----------------KGAAEMILASCTKYLDTDGQLQSIDG--DEDFFK 594
R + V+ KGA E ++ C Y+ + G E
Sbjct: 489 RDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILS 547
Query: 595 AAVDEMAAR-SLRCVAIAYR--------FILD---KWTLPEEELILLAIVGIKDPCRPGV 642
+ R +LRC+A+A R +LD ++ E +L + +VG+ DP R V
Sbjct: 548 VIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEV 607
Query: 643 KDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIEGKVFRALSDKER 702
+++LCRDAG++V M+TGDN TA AI GI G + E D G+ F L E+
Sbjct: 608 MGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD-RAYTGREFDDLPLAEQ 666
Query: 703 EKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMGIQGTE 762
+ + R P+ K +V+ L+ NDAPAL +A+IG+AMG GT
Sbjct: 667 REACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTA 725
Query: 763 VAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXXSSGDV 822
VAK S++++ DDNF+++V V GR+++ N+++FI++ ++
Sbjct: 726 VAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPE 785
Query: 823 PLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRKEPLITNIMW 871
L VQLLWVNL+ D L A AL PP +M R P KEPLI+ ++
Sbjct: 786 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLF 834
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 218/812 (26%), Positives = 346/812 (42%), Gaps = 126/812 (15%)
Query: 170 EEGWYDGASIAFAVFLVIVVTAISDYRQSLQFQNLNKEKRNI---QLEAMRGGKAVKISI 226
EE D + + V+++T Y Q + + + +N+ Q +R G+ + I+
Sbjct: 98 EEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINA 157
Query: 227 FDVVVGEIVPLRIGDQVPAD-------GVLVTGHSLAIDESSMTGESKIVRKD----HKT 275
+VVVG++V ++ GD++PAD G V SL + T ++
Sbjct: 158 EEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNI 217
Query: 276 PFLMSGCKVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRL-------NGVAT 328
F + C + T G + S G +TP+ + GVA
Sbjct: 218 AFFSTNC--VEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAV 275
Query: 329 FIGIXXXXXXXXXXXXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSR 388
F+G+ S F+ ++ VI ++ I
Sbjct: 276 FLGV----------------------------SFFILSLILEYTWLEAVIFLIGI----- 302
Query: 389 AIQVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTL 448
+V VPEGL VT+ L + ++M LV+ L A ET+GS +TICSDKTGTL
Sbjct: 303 ------IVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 356
Query: 449 TLNEMTVVEAFIGRKKINPPDDSSQMHSI--------------VIYLLSEGIAQNTTGNV 494
T N MTV + +I+ D + + + L + + Q N+
Sbjct: 357 TQNRMTVAHMW-SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENL 415
Query: 495 FVPKDGEAVEVSGSPTEKAILSWAVKLGMKFDRVRSETTVLHVFPFNSEKKRGGVAVKRI 554
+ K V+G +E A+L +R T + PFNS K K
Sbjct: 416 PILKRA----VAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNP 471
Query: 555 NSEVHVH---WKGAAEMILASCTKYLDTDGQLQSIDGD-EDFFKAAVDEMAARSLRCVAI 610
N+ H KGA E IL C+ L G+ Q +D + +D F+ A E+ R +
Sbjct: 472 NTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGF 530
Query: 611 AYRFILDKW------------TLPEEELILLAIVGIKDPCRPGVKDAVKLCRDAGVKVRM 658
+ F+ D+ P + L + ++ + DP R V DAV CR AG+KV M
Sbjct: 531 CHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIM 590
Query: 659 VTGDNLQTAKAIALECGILGSDAEA--------NDP-----------NIIEGKVFRALSD 699
VTGD+ TAKAIA GI+ E N P ++ G + ++
Sbjct: 591 VTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTS 650
Query: 700 KEREKVAQEIT--VMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMG 757
++ + + + T V R+SP KL++V+ ++ ND+PA +ADIG+AMG
Sbjct: 651 EQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMG 710
Query: 758 IQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXX 817
I G++V+K+ +D+I+LDDNFAS+V V GR +F N++K I + LT
Sbjct: 711 IAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII 770
Query: 818 SSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRK------EPLITNIMW 871
++ +PL V +L ++L D + A++LA E +M R P K E LI+
Sbjct: 771 ANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYG 830
Query: 872 RNLIVQALYQ-VTVLLVLNFKGTSILHLEGER 902
+ ++QAL T ++L G +HL G R
Sbjct: 831 QIGMIQALGGFFTYFVILAENGFLPIHLLGLR 862
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 206/761 (27%), Positives = 328/761 (43%), Gaps = 109/761 (14%)
Query: 175 DGASIAFAVFLVIVVTAISDYRQSLQFQNLNKEKRNI---QLEAMRGGKAVKISIFDVVV 231
D +A A+ V+VVT Y Q + N+ +N+ Q +R G +I+ +VV
Sbjct: 138 DNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVV 197
Query: 232 GEIVPLRIGDQVPADGVLVTGHSLAIDESSMTGESKIVRKD----HKTP-------FLMS 280
G++V ++ GD+VPAD ++ +D SS+TGES+ + H++P F +
Sbjct: 198 GDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFST 257
Query: 281 GCKVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIXXXXXXXX 340
C + T G + + S E+TP+ + + F+ I
Sbjct: 258 MC--LEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIE---IEHFVDI-------- 304
Query: 341 XXXXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSRAIQVTIVVVA-- 398
+ G + A ++ + T RA+ + +V
Sbjct: 305 -----------------------IAGLAILFGATFFIVAMCIGYTFLRAMVFFMAIVVAY 341
Query: 399 VPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEA 458
VPEGL VT+ L+ + +++ + +V+ L A ET+GS + ICSDKTGTLT N MTV
Sbjct: 342 VPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHL 401
Query: 459 FIG---RKKINPPDDSSQMH----------SIVIYLLSEGIAQNTTGNVFVPKDGEAVEV 505
+ D S Q V+ L + ++ V VPK V
Sbjct: 402 WFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKR----IV 457
Query: 506 SGSPTEKAILSWA-VKLGMKFDRVRSETTVLHVFPFNSEKKRGGVAVKRIN---SEVHVH 561
G +E A+L ++ + LG V + PFNS K +++ + HV
Sbjct: 458 IGDASETALLKFSELTLGNAMGYRERFPKVCEI-PFNSTNKF-QLSIHTLEDPRDPRHVL 515
Query: 562 -WKGAAEMILASCTKYLDTDGQLQSIDGDEDFFKAAVDEMAARSLRCVAIA--------- 611
KGA E +L C+ L +L + + F+ A + R +
Sbjct: 516 VMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDY 575
Query: 612 ---YRFILDKWTLPEEELILLAIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAK 668
Y F ++ P L +V + DP R V DAV CR AG++V MVTGD+ TAK
Sbjct: 576 PPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAK 635
Query: 669 AIALECGILGSDAEANDP---------NIIEGKVFRA-------LSDKEREKVAQEI--- 709
AIA GI+ +E + + + K RA L D + ++ + +
Sbjct: 636 AIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTH 695
Query: 710 --TVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMGIQGTEVAKEN 767
V R+SP KL++V++ ++ ND+PAL +ADIG+AMGI G++ AK
Sbjct: 696 PEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNA 755
Query: 768 SDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXXSSGDVPLNAV 827
+D+I+LDDNFAS+V V GR +F N++K I + LT S +PL +
Sbjct: 756 ADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCI 815
Query: 828 QLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRKEPLITN 868
+L++ L D +++LA E +MH P K + N
Sbjct: 816 TILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 856
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 168/549 (30%), Positives = 254/549 (46%), Gaps = 62/549 (11%)
Query: 392 VTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLN 451
+ I+V VPEGL VT+ L + ++M LV+ L A ET+GS +TICSDKTGTLT N
Sbjct: 330 IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQN 389
Query: 452 EMTVVEAFIGRKKINPPDDSSQMH--------------SIVIYLLSEGIAQNTTGNVFVP 497
MTV + +I+ D + S + L + + Q NV +
Sbjct: 390 RMTVAHMWFD-NQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPIL 448
Query: 498 KDGEAVEVSGSPTEKAILSWAVKLGMKFDRVRSETTVLHVFPFNSEKKRGGVAV----KR 553
K V+G +E A+L +R + PFNS K +++ K
Sbjct: 449 KR----SVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQ-LSIHENEKS 503
Query: 554 INSEVHVHWKGAAEMILASCTKYLDTDGQLQSIDGD-EDFFKAAVDEMAARSLRCVAIA- 611
S + KGA E IL C+ L +G + + D ++ F+ A E+ R +
Sbjct: 504 SESRYLLVMKGAPERILDRCSTIL-LNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCH 562
Query: 612 -----------YRFILDKWTLPEEELILLAIVGIKDPCRPGVKDAVKLCRDAGVKVRMVT 660
Y F D+ P +L + ++ + DP R V DAV CR AG+KV MVT
Sbjct: 563 FALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVT 622
Query: 661 GDNLQTAKAIALECGILGSDAEA--------NDP-----------NIIEGKVFRALSDKE 701
GD+ TAKAIA GI+ E N P ++ G + LS +
Sbjct: 623 GDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEV 682
Query: 702 REKVAQEIT--VMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADIGLAMGIQ 759
+ + T V R+SP KL++V+ ++ ND+PAL +ADIG+AMGI
Sbjct: 683 LDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIS 742
Query: 760 GTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQLTXXXXXXXXXXXXXXSS 819
G++V+K+ +D+I+LDDNFAS+V V GR +F N++K I + LT +
Sbjct: 743 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGN 802
Query: 820 GDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRLPVGRKEPLITNIMWRNLIVQAL 879
+PL V +L ++L D + A++LA E +M R P + P ++ LI A
Sbjct: 803 VPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAY 859
Query: 880 YQVTVLLVL 888
Q+ ++ L
Sbjct: 860 GQIGMIQAL 868
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 186 VIVVTAISDYRQSLQFQNLNKEKRNI---QLEAMRGGKAVKISIFDVVVGEIVPLRIGDQ 242
V++VT Y Q + + +N+ Q +R G+ I+ VV G++V ++ GD+
Sbjct: 144 VVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDR 203
Query: 243 VPADGVLVTGHSLAIDESSMTGESK 267
+PAD +++ H +D SS+TGES+
Sbjct: 204 IPADLRIISAHGCKVDNSSLTGESE 228
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 141/614 (22%), Positives = 242/614 (39%), Gaps = 119/614 (19%)
Query: 214 EAMRGGKAVKISIFDVVVGEIVPLRIGDQVPADGVLVTGHSLAIDESSMTGESKIVRKDH 273
+ +R GK + +V G+IV +++GD +PAD L+ G L +D+S++TGES V K H
Sbjct: 133 KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK-H 191
Query: 274 KTPFLMSG--CKVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRLNGVATFIG 331
+ SG CK E V GV TF G
Sbjct: 192 PGQEVFSGSTCKQG------------------------------EIEAVVIATGVHTFFG 221
Query: 332 IXXXXXXXXXXXXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSRAIQ 391
GH K + S A+ VI+I+ + R
Sbjct: 222 --------KAAHLVDSTNQVGHFQK---VLTAIGNFCICSIAIGMVIEIIVMYPIQRRKY 270
Query: 392 -------VTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDK 444
+ +++ +P +P +++T+A ++ A+ +R++A E M +CSDK
Sbjct: 271 RDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDK 330
Query: 445 TGTLTLNEMTV----VEAFIGRKKINPPDDSSQMHSIVIYLLSEGIAQNTTGNVFVPKDG 500
TGTLTLN+++V VE F + ++++ +N D
Sbjct: 331 TGTLTLNKLSVDKNLVEVFC---------KGVEKDQVLLFAAMASRVENQDA-----IDA 376
Query: 501 EAVEVSGSPTEKAILSWAVKLGMKFDRVRSETTVLHVFPFNSEKKRGGVAVKRINSEVHV 560
V + P E R+ +H PFN KR + + H
Sbjct: 377 AMVGMLADPKE----------------ARAGIREVHFLPFNPVDKRTALTYIDGSGNWHR 420
Query: 561 HWKGAAEMILASCTKYLDTDGQLQSIDGDEDFFKAAVDEMAARSLRCVAIAYRFILDKWT 620
KGA E IL D ++ SI +D+ A R LR +A+A + + +K
Sbjct: 421 VSKGAPEQILELAKASNDLSKKVLSI----------IDKYAERGLRSLAVARQVVPEKTK 470
Query: 621 -LPEEELILLAIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECG---- 675
P + ++ + DP R + ++ + GV V+M+TGD L K G
Sbjct: 471 ESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTN 530
Query: 676 ------ILGSDAEANDPNIIEGKVFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRK 729
+LG+ +AN L+ E++ ++ P K +V+ L++
Sbjct: 531 MYPSSALLGTHKDAN------------LASIPVEELIEKADGFAGVFPEHKYEIVKKLQE 578
Query: 730 XXXXXXXXXXXXNDAPALHEADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRS 789
NDAPAL +ADIG+A+ T+ A+ SDI++ + + ++ V R+
Sbjct: 579 RKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRA 637
Query: 790 VFANIQKFIQFQLT 803
+F ++ + + ++
Sbjct: 638 IFQRMKNYTIYAVS 651
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 161/711 (22%), Positives = 298/711 (41%), Gaps = 99/711 (13%)
Query: 99 ELLKTNLEKGISGDDTDLSNRRNSFGSNTYPLKKGRSFLNFLWEAWQDXXXXXXXXXXXX 158
++L+T+ G++ ++ + RR +G N +K FL FL
Sbjct: 78 DMLQTDTRVGLTSEE--VVQRRRKYGLNQMKEEKENHFLKFL--------GFFVGPIQFV 127
Query: 159 XXXXXXKTEGVEEGWYDGASIAFAVFL-VIVVTAISDYRQSLQFQNLNKE-KRNIQLEA- 215
G+E+ W D F V ++++ A+ + Q Q ++ E K+ + L+A
Sbjct: 128 MEGAAVLAAGLED-WVD-----FGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAV 181
Query: 216 -MRGGKAVKISIFDVVVGEIVPLRIGDQVPADGVLVTGHS-LAIDESSMTGESKIVRKDH 273
+R G +I +VV G+I+ + G +PADG +VT + L +D+S++TGES V K H
Sbjct: 182 VLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDK-H 240
Query: 274 KTPFLMSGCKVADXXXXXXXXXXXINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIX 333
K + + V NT G A ++ +G LNG+ T + I
Sbjct: 241 KGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLIL 300
Query: 334 XXXXXXXXXXXXXXXXXTGHTTKEDGSSAFVKGRTSVSDAVDGVIKIVTIATNSRAIQVT 393
S+F + + +++I+ +
Sbjct: 301 VIFTLLIVWV-----------------SSFYRS--------NPIVQILEFT-------LA 328
Query: 394 IVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEM 453
I ++ VP GLP VT T+A + KA+V++LSA E++ +CSDKTGTLT N++
Sbjct: 329 ITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKL 388
Query: 454 TVVEAFIGRKKINPPDDSSQMHSIVIYLLSEGIAQNTTGNVFVPKDGEAVEVSGSPTEKA 513
++ + + ++P D +L+ +A + K +A+ +KA
Sbjct: 389 SLHDPYT-VAGVDPED----------LMLTACLAASRK-----KKGIDAI-------DKA 425
Query: 514 ILSWAVKLGMKFDRVRSETTVLHVFPFNSEKKRGGVAVKRINSEVHVHWKGAAEMILASC 573
L ++K + V S+ VL PF+ K+ V+ E KGA +L
Sbjct: 426 FLK-SLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVL--- 481
Query: 574 TKYLDTDGQL-QSIDGDEDFFKAAVDEMAARSLRCVAIAYRFILDKWTLPEEELILLAIV 632
K ++ D + + +D +K V E A R R + +A + W +L I+
Sbjct: 482 -KTVEEDHPIPEEVD---QAYKNKVAEFATRGFRSLGVARKRGEGSWE-------ILGIM 530
Query: 633 GIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIEGK 692
DP R V + G+ ++M+TGD + A+ + + G LG++ + +
Sbjct: 531 PCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLG-LGTN--IYNAERLGLG 587
Query: 693 VFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADI 752
+ E + P K +V+ L++ NDAP+L +AD
Sbjct: 588 GGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADT 647
Query: 753 GLAMGIQG-TEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQL 802
G+A ++G ++ A+ +DI+ L +++ ++ R +F + ++ +++
Sbjct: 648 GIA--VEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRI 696
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 33/172 (19%)
Query: 629 LAIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNI 688
+A++ ++DP + + + + +G+++ M+TGD+ +TA+A+A GI
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI------------ 593
Query: 689 IEGKVFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALH 748
+KV EI P DK +V L+ NDAPAL
Sbjct: 594 --------------KKVVAEIM------PEDKSRIVSELKDKGLIVAMAGDGVNDAPALA 633
Query: 749 EADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQF 800
+ADIG+AMG GT+VA E++ + +L + + K R S +NI++ + F
Sbjct: 634 KADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFF 684
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 219 GKAVKISIFDVVVGEIVPLRIGDQVPADGVLVTGHSLAIDESSMTGESKIVRKD 272
G ++S+ +V VG+++ +R G+++P DG + G S +DES +TGE V K+
Sbjct: 234 GSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKE 286
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 392 VTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLT 449
V+++++A P L LA +++ + K L++ A E M T+ DKTGTLT
Sbjct: 375 VSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLT 432
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 36/173 (20%)
Query: 631 IVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIE 690
I+ + D + K AV+ + G+KV M+TGDN ++A+AI+ E + +++
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------DLVI 500
Query: 691 GKVFRALSDKEREKV-AQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHE 749
+V +E +K+ A+E+ NDAPAL +
Sbjct: 501 AEVLPHQKSEEVKKLQAKEVVAF------------------------VGDGINDAPALAQ 536
Query: 750 ADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQL 802
AD+G+A+G G++VA E+ DI+++ D+ VV ++ R + I++ I + L
Sbjct: 537 ADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 216 MRGGKAVKISIFDVVVGEIVPLRIGDQVPADGVLVTGHSLAIDESSMTGE 265
+R GK + + + +V VG+IV +R G+++P DGV+V G S +DES ++GE
Sbjct: 138 IRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGE 186
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 392 VTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLT 449
+ ++VVA P LA L M K L++ A E T + DKTGTLT
Sbjct: 281 IAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 338
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 36/173 (20%)
Query: 631 IVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIE 690
I+ + D + K AV+ + G+KV M+TGDN ++A+AI+ E + +++
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------DLVI 578
Query: 691 GKVFRALSDKEREKV-AQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHE 749
+V +E +K+ A+E+ NDAPAL +
Sbjct: 579 AEVLPHQKSEEVKKLQAKEVVAF------------------------VGDGINDAPALAQ 614
Query: 750 ADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQKFIQFQL 802
AD+G+A+G G++VA E+ DI+++ D+ VV ++ R + I++ I + L
Sbjct: 615 ADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 216 MRGGKAVKISIFDVVVGEIVPLRIGDQVPADGVLVTGHSLAIDESSMTGE 265
+R GK + + + +V VG+IV +R G+++P DGV+V G S +DES ++GE
Sbjct: 216 IRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGE 264
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 392 VTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLT 449
+ ++VVA P LA L M K L++ A E T + DKTGTLT
Sbjct: 359 IAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 416
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 36/166 (21%)
Query: 631 IVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIE 690
I+ + D + K AV+ + G+KV M+TGDN ++A+AI+ E + +++
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------DLVI 206
Query: 691 GKVFRALSDKEREKV-AQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHE 749
+V +E +K+ A+E+ NDAPAL +
Sbjct: 207 AEVLPHQKSEEVKKLQAKEVVAF------------------------VGDGINDAPALAQ 242
Query: 750 ADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQ 795
AD+G+A+G G++VA E+ DI+++ D+ VV ++ R + I+
Sbjct: 243 ADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 36/166 (21%)
Query: 631 IVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIE 690
I+ + D + K AV+ + G+KV M+TGDN ++A+AI+ E + +++
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------DLVI 206
Query: 691 GKVFRALSDKEREKV-AQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHE 749
+V +E +K+ A+E+ NDAPAL +
Sbjct: 207 AEVLPHQKSEEVKKLQAKEVVAF------------------------VGDGINDAPALAQ 242
Query: 750 ADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQ 795
AD+G+A+G G++VA E+ DI+++ D+ VV ++ R + I+
Sbjct: 243 ADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 630 AIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNII 689
++ + D RP ++A+ + G+K M+TGDN AK +A E G+ AE
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAEV------ 190
Query: 690 EGKVFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHE 749
+ ++K +E + +T M NDAPAL +
Sbjct: 191 ---LPHEKAEKVKEVQQKYVTAM------------------------VGDGVNDAPALAQ 223
Query: 750 ADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQ 795
AD+G+A+G GT+VA E +DI+++ ++ V +V R ++ ++
Sbjct: 224 ADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 34/166 (20%)
Query: 630 AIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNII 689
++ + D RP ++A+ + G+K M+TGDN AK +A E G+ AE
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAEV------ 190
Query: 690 EGKVFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHE 749
+ ++K +E + +T M NDAPAL +
Sbjct: 191 ---LPHEKAEKVKEVQQKYVTAM------------------------VGDGVNDAPALAQ 223
Query: 750 ADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVFANIQ 795
AD+G+A+G GT+VA E +DI+++ ++ V +V R ++
Sbjct: 224 ADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFH 268
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 36/159 (22%)
Query: 631 IVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIE 690
I+ + D + K AV+ + G+KV +TGDN ++A+AI+ E + +++
Sbjct: 137 IIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL----------DLVI 186
Query: 691 GKVFRALSDKEREKV-AQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHE 749
+V +E +K+ A+E+ NDAPAL +
Sbjct: 187 AEVLPHQKSEEVKKLQAKEVVAF------------------------VGDGINDAPALAQ 222
Query: 750 ADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVRWGR 788
AD+G+A+G G++VA E+ DI+++ D+ VV ++ R
Sbjct: 223 ADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|4AQR|D Chain D, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 57
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 47 VASLKRWRQASLVLNASRRFRYTLDLXXXXXXXXXXXMIRAHAQVI 92
+ L++WR+A+LVLNASRRFRYTLDL IR+HA +
Sbjct: 3 IERLQQWRKAALVLNASRRFRYTLDLKKEQETREMRQKIRSHAHAL 48
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 216 MRGGKAVKISIFDVVVGEIVPLRIGDQVPADGVLVTGHSLAIDESSMTGE 265
+R GK + + + +V VG+IV +R G+++P DGV+V G S +DES ++GE
Sbjct: 17 IRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGE 65
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 48/153 (31%)
Query: 634 IKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNIIEGKV 693
+K+ +P V++ + G+KV +TGDN ++A+AI+ E + +++ +V
Sbjct: 23 LKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAISRELNL----------DLVIAEV 68
Query: 694 FRALSDKEREKV-AQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALHEADI 752
+E +K+ A+E+ NDAPAL +AD+
Sbjct: 69 LPHQKSEEVKKLQAKEVVAF------------------------VGDGINDAPALAQADL 104
Query: 753 GLAMGIQGTEVAKENSDIIILDDNFASVVKVVR 785
G+A+G + DI+++ D+ VV ++
Sbjct: 105 GIAVG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|3P8X|A Chain A, Synthesis, Structure, And Biological Activity Of Des-Side
Chain Analogues Of 1alpha,25-Dihydroxyvitamin D3 With
Substituents At C-18
Length = 280
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 142 GNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 201
Query: 645 A 645
A
Sbjct: 202 A 202
>pdb|3M7R|A Chain A, Crystal Structure Of Vdr H305q Mutant
Length = 253
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A +SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 119 GNQDYKYRVSDVTKAGQSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 178
Query: 645 A 645
A
Sbjct: 179 A 179
>pdb|1S0Z|A Chain A, Crystal Structure Of The Vdr Lbd Complexed To Seocalcitol.
pdb|1S19|A Chain A, Crystal Structure Of Vdr Ligand Binding Domain Complexed
To Calcipotriol.
pdb|1TXI|A Chain A, Crystal Structure Of The Vdr Ligand Binding Domain
Complexed To Tx522
pdb|2HAM|A Chain A, Crystal Structure Of Vdr Lbd Complexed To 2alpha-Propyl-
Calcitriol
pdb|2HAR|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2 Alpha-(3-
Hydroxy-1-Propoxy) Calcitriol
pdb|2HAS|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-(1-
Propoxy) Calcitriol
pdb|2HB7|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha(3-
Hydroxy-1-Propyl) Calcitriol
pdb|2HB8|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-Methyl
Calcitriol
pdb|3CS4|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3CS6|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3A3Z|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277a(C23s)
pdb|3A40|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277b(C23r)
pdb|3A78|A Chain A, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Natural Metabolite
1alpha,25-Dihydroxy-3-Epi-Vitamin D3
pdb|3AUQ|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2alpha- Methyl-19-Norvitamin D3
pdb|3AUR|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2beta- Methyl-19-Norvitamin D3
pdb|3AX8|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With
15alpha-Methoxy-1alpha,25-Dihydroxyvitamin D3
Length = 263
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 125 GNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 184
Query: 645 A 645
A
Sbjct: 185 A 185
>pdb|1DB1|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Complexed To Vitamin D
pdb|1IE8|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Kh1060
pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Mc1288
pdb|3OGT|A Chain A, Design, Chemical Synthesis, Functional Characterization
And Crystal Structure Of The Sidechain Analogue Of
1,25-Dihydroxyvitamin D3.
pdb|3KPZ|A Chain A, Crystal Structure Of A Novel Vitamin D3 Analogue, Zk203278
Showing Dissociated Profile
pdb|3TKC|A Chain A, Design, Synthesis, Evaluation And Structure Of Vitamin D
Analogues With Furan Side Chains
pdb|4G2I|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 259
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 121 GNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 180
Query: 645 A 645
A
Sbjct: 181 A 181
>pdb|3AZ1|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ2|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ3|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
Length = 253
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 119 GNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 178
Query: 645 A 645
A
Sbjct: 179 A 179
>pdb|3B0T|A Chain A, Human Vdr Ligand Binding Domain In Complex With
Maxacalcitol
Length = 254
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 120 GNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 179
Query: 645 A 645
A
Sbjct: 180 A 180
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 629 LAIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNI 688
+A I D RP +KD ++ ++ G+K+ +++GD K ++ E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 689 IEGKVFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALH 748
QE SP DK+ +++ L++ NDA AL
Sbjct: 176 ------------------QE--YYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALA 215
Query: 749 EADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVR 785
AD+ +AMG G +++K +DII++ ++ +++ +++
Sbjct: 216 LADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 629 LAIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNI 688
+A I D RP +KD ++ ++ G+K+ +++GD K ++ E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 689 IEGKVFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALH 748
QE SP DK+ +++ L++ NDA AL
Sbjct: 176 ------------------QE--YYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALA 215
Query: 749 EADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVR 785
AD+ +AMG G +++K +DII++ ++ +++ +++
Sbjct: 216 LADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 629 LAIVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGDNLQTAKAIALECGILGSDAEANDPNI 688
+A I D RP +KD ++ ++ G+K+ +++GD K ++ E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 689 IEGKVFRALSDKEREKVAQEITVMGRSSPNDKLLLVQALRKXXXXXXXXXXXXNDAPALH 748
QE SP DK+ +++ L++ NDA AL
Sbjct: 176 ------------------QE--YYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALA 215
Query: 749 EADIGLAMGIQGTEVAKENSDIIILDDNFASVVKVVR 785
AD+ +AMG G +++K +DII++ ++ +++ +++
Sbjct: 216 LADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2ZFX|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr301 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3A2H|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Tei-9647 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3AUN|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr335 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
Length = 265
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 588 GDEDFFKAAVD-EMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G +D+ D A +L + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 127 GSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 186
Query: 645 A 645
A
Sbjct: 187 A 187
>pdb|2ZL9|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLA|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLC|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZMH|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMI|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMJ|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZXM|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|2ZXN|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|3AFR|A Chain A, Crystal Structure Of
Vdr-Lbd22S-Butyl-1a,24r-Dihydroxyvitamin D3 Complex
pdb|3VJS|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VJT|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VRT|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Mehylidene-19,25,26,27-
Tetranor-1alpha,24-Dihydroxyvitamind3
pdb|3VRU|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-19,24-Dinor- 1alpha,25-Dihydroxy Vitamind3
pdb|3VRV|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-26,27-
Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
pdb|3VRW|A Chain A, Vdr Ligand Binding Domain In Complex With
22s-Butyl-2-Methylidene-26,
27-Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
Length = 271
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 588 GDEDFFKAAVD-EMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G +D+ D A +L + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 133 GSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 192
Query: 645 A 645
A
Sbjct: 193 A 193
>pdb|3A2I|A Chain A, Crystal Structure Of The Human Vitamin D Receptor (H305f)
Ligand Binding Domain Complexed With Tei-9647
Length = 263
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 125 GNQDYKYRVSDVTKAGFSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 184
Query: 645 A 645
A
Sbjct: 185 A 185
>pdb|3A2J|A Chain A, Crystal Structure Of The Human Vitamin D Receptor
(H305fH397F) LIGAND Binding Domain Complexed With
Tei-9647
Length = 263
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 588 GDEDF-FKAAVDEMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G++D+ ++ + A SL + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 125 GNQDYKYRVSDVTKAGFSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 184
Query: 645 A 645
A
Sbjct: 185 A 185
>pdb|1RJK|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2md And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RK3|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 1,25-Dihydroxyvitamin D3
And A Synthetic Peptide Containing The Nr2 Box Of Drip
205
pdb|1RKG|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2mbisp And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RKH|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2am20r And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|2O4J|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20z And The Nr2 Box Of
Drip 205
pdb|2O4R|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20e And The Nr2 Box Of
Drip 205
Length = 292
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 588 GDEDFFKAAVD-EMAARSLRCVA--IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKD 644
G +D+ D A +L + I ++ L K L EEE +LL + I P RPGV+D
Sbjct: 123 GSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQD 182
Query: 645 A 645
A
Sbjct: 183 A 183
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 232 GEIVPLRIGDQVPADGVLVTGHSLAIDESSMTGESKIVRK 271
G+I+ + G + P DG ++ GHS+ +DES +TGE+ V K
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAK 83
>pdb|4FHH|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4FHI|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4G1D|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Y|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Z|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G20|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G21|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G2H|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 300
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 610 IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKDAVKL 648
+ ++ L K L EEE +LL + + P RPGV+D V++
Sbjct: 189 VKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRI 227
>pdb|2HBH|A Chain A, Crystal Structure Of Vitamin D Nuclear Receptor Ligand
Binding Domain Bound To A Locked Side-Chain Analog Of
Calcitriol And Src-1 Peptide
pdb|2HC4|A Chain A, Crystal Structure Of The Lbd Of Vdr Of Danio Rerio In
Complex With Calcitriol
pdb|2HCD|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Vitamin D Nuclear Receptor In Complex With Gemini And A
Coactivator Peptide
pdb|3DR1|A Chain A, Side-Chain Fluorine Atoms Of Non-Steroidal Vitamin D3
Analogs Stabilize Helix 12 Of Vitamin D Receptor
pdb|3O1D|A Chain A, Structure-Function Study Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097.
pdb|3O1E|A Chain A, Structure-Function Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097
Length = 302
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 610 IAYRFILDKWTLPEEELILLAIVGIKDPCRPGVKDAVKL 648
+ ++ L K L EEE +LL + + P RPGV+D V++
Sbjct: 191 VKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRI 229
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 400 PEGLPLAVTLTLAYSMRKMMADKALVRRL 428
PEGLP +T LA R+M A+VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 538 FPFNSEKKRGGVAVKRINSEVH-VHWKGAAEMILASCTKYLDTDGQLQSIDGDEDFF--- 593
PF+ E++R V V N+E H + KGA + IL C++ + +G++ +D D
Sbjct: 62 IPFDFERRRMSVVVAE-NTEHHQLVCKGALQEILNVCSQ-VRHNGEIVPLD---DIMLRK 116
Query: 594 -KAAVDEMAARSLRCVAIAYRFIL----DKWTLPEEELILLAIVGIKD 636
K D + + LR VA+A +++ D E +LIL + D
Sbjct: 117 IKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLD 164
>pdb|2E33|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 197
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 470 DSSQMHSIVIYLLSEG---IAQNTTGNVFVPKDGEAVEVS 506
D+ ++ + + LLSE +A+ TG V VP+DG +E+S
Sbjct: 116 DAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEIS 155
>pdb|1UMH|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase
Length = 184
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 470 DSSQMHSIVIYLLSEG---IAQNTTGNVFVPKDGEAVEVS 506
D+ ++ + + LLSE +A+ TG V VP+DG +E+S
Sbjct: 103 DAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEIS 142
>pdb|2RJ2|A Chain A, Crystal Structure Of The Sugar Recognizing Scf Ubiquitin
Ligase At 1.7 Resolution
Length = 185
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 470 DSSQMHSIVIYLLSEG---IAQNTTGNVFVPKDGEAVEVS 506
D+ ++ + + LLSE +A+ TG V VP+DG +E+S
Sbjct: 104 DAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEIS 143
>pdb|2E31|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|C Chain C, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 297
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 470 DSSQMHSIVIYLLSEG---IAQNTTGNVFVPKDGEAVEVS 506
D+ ++ + + LLSE +A+ TG V VP+DG +E+S
Sbjct: 216 DAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEIS 255
>pdb|1UMI|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase
Length = 184
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 470 DSSQMHSIVIYLLSEG---IAQNTTGNVFVPKDGEAVEVS 506
D+ ++ + + LLSE +A+ TG V VP+DG +E+S
Sbjct: 103 DAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEIS 142
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 572 SCTKYLDTDGQLQSIDGDEDFFKAAVDE-MAARSLRCVAIAYRFILDKWTLPEEELILLA 630
S T L+ DG L D D +K + R++R IA F+L LPE+ L L
Sbjct: 94 SYTAILERDGNLVIALADMDLYKLFTPRRLKVRAVREAIIASDFLLCDANLPEDTLTALG 153
Query: 631 IVGIKDPCRPGVKDAVKLCRDAGVKVRMVTGD 662
+ I C + A+ + VK++ GD
Sbjct: 154 L--IARACEKPLA-AIAISPAKAVKLKAALGD 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,340,634
Number of Sequences: 62578
Number of extensions: 926744
Number of successful extensions: 1900
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1782
Number of HSP's gapped (non-prelim): 81
length of query: 1023
length of database: 14,973,337
effective HSP length: 109
effective length of query: 914
effective length of database: 8,152,335
effective search space: 7451234190
effective search space used: 7451234190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)