Query 042092
Match_columns 179
No_of_seqs 115 out of 1526
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 1E-18 2.3E-23 150.7 10.2 135 41-177 158-297 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.6E-18 3.5E-23 149.5 10.4 155 10-177 162-321 (968)
3 KOG0617 Ras suppressor protein 99.6 8.2E-18 1.8E-22 115.0 -1.7 150 11-177 32-186 (264)
4 KOG4194 Membrane glycoprotein 99.6 1.2E-16 2.6E-21 126.6 0.3 157 8-177 265-429 (873)
5 KOG4194 Membrane glycoprotein 99.6 4.3E-16 9.4E-21 123.5 3.2 90 8-109 145-234 (873)
6 KOG0617 Ras suppressor protein 99.5 9E-17 1.9E-21 109.9 -3.9 138 6-159 50-192 (264)
7 KOG0444 Cytoskeletal regulator 99.5 1.4E-15 3E-20 121.9 1.0 151 12-178 103-259 (1255)
8 KOG0444 Cytoskeletal regulator 99.4 6.3E-15 1.4E-19 118.2 -1.3 150 9-175 219-373 (1255)
9 PF14580 LRR_9: Leucine-rich r 99.3 1.4E-12 3E-17 91.0 4.5 126 11-171 18-147 (175)
10 KOG0618 Serine/threonine phosp 99.3 1.5E-13 3.3E-18 113.8 -0.5 159 9-175 307-487 (1081)
11 KOG0472 Leucine-rich repeat pr 99.3 5E-14 1.1E-18 107.6 -4.3 131 41-178 154-289 (565)
12 KOG0472 Leucine-rich repeat pr 99.3 3.5E-13 7.7E-18 103.0 -1.0 147 14-178 390-542 (565)
13 cd00116 LRR_RI Leucine-rich re 99.3 1.3E-12 2.9E-17 99.6 2.1 15 11-25 80-94 (319)
14 PLN03150 hypothetical protein; 99.2 2.4E-11 5.2E-16 100.6 7.8 94 13-118 419-512 (623)
15 KOG0532 Leucine-rich repeat (L 99.2 1.9E-12 4.2E-17 102.6 -0.5 132 39-178 113-248 (722)
16 PLN03150 hypothetical protein; 99.2 6E-11 1.3E-15 98.3 8.2 107 49-175 420-526 (623)
17 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-11 5.8E-16 84.6 5.0 113 42-178 14-127 (175)
18 PRK15387 E3 ubiquitin-protein 99.2 1E-10 2.2E-15 98.1 8.7 77 96-178 382-459 (788)
19 KOG4237 Extracellular matrix p 99.2 8.2E-13 1.8E-17 100.7 -4.0 79 14-104 69-148 (498)
20 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-11 2.9E-16 94.1 2.2 94 10-109 49-150 (319)
21 KOG1259 Nischarin, modulator o 99.1 9.6E-12 2.1E-16 92.3 -1.0 127 47-178 284-413 (490)
22 PLN03210 Resistant to P. syrin 99.1 1.1E-09 2.4E-14 96.5 11.5 62 43-106 653-714 (1153)
23 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.4E-15 67.6 3.5 60 48-108 2-61 (61)
24 PRK15370 E3 ubiquitin-protein 99.1 6.8E-10 1.5E-14 93.3 9.3 117 48-178 242-381 (754)
25 PRK15370 E3 ubiquitin-protein 99.1 6.4E-10 1.4E-14 93.4 8.7 118 47-178 262-402 (754)
26 KOG3207 Beta-tubulin folding c 99.1 5.3E-11 1.1E-15 91.9 1.8 161 6-177 166-339 (505)
27 KOG0618 Serine/threonine phosp 99.0 1.8E-11 4E-16 101.7 -1.8 147 12-174 359-510 (1081)
28 PLN03210 Resistant to P. syrin 99.0 2.8E-09 6E-14 94.1 11.2 124 45-176 609-737 (1153)
29 KOG4237 Extracellular matrix p 99.0 2.9E-11 6.4E-16 92.3 -2.0 127 47-175 67-199 (498)
30 PF13855 LRR_8: Leucine rich r 99.0 6.8E-10 1.5E-14 64.3 3.9 61 12-84 1-61 (61)
31 PRK15387 E3 ubiquitin-protein 99.0 2.9E-09 6.3E-14 89.5 8.8 76 13-109 223-315 (788)
32 COG4886 Leucine-rich repeat (L 98.9 6.1E-10 1.3E-14 87.7 3.6 148 11-177 115-290 (394)
33 COG4886 Leucine-rich repeat (L 98.8 2.1E-09 4.5E-14 84.7 3.7 118 16-149 97-219 (394)
34 KOG0532 Leucine-rich repeat (L 98.8 3E-10 6.4E-15 90.5 -3.3 146 12-177 75-224 (722)
35 KOG1859 Leucine-rich repeat pr 98.6 7.6E-10 1.6E-14 90.6 -6.7 122 13-153 165-293 (1096)
36 KOG3207 Beta-tubulin folding c 98.6 7.9E-09 1.7E-13 80.1 -0.9 159 10-177 144-314 (505)
37 KOG1909 Ran GTPase-activating 98.5 3.5E-08 7.5E-13 74.6 1.1 42 136-177 238-283 (382)
38 KOG1259 Nischarin, modulator o 98.5 2.4E-08 5.1E-13 74.6 0.1 106 66-177 278-387 (490)
39 KOG4579 Leucine-rich repeat (L 98.5 4E-09 8.8E-14 70.0 -4.1 105 5-125 20-128 (177)
40 KOG1909 Ran GTPase-activating 98.4 4.6E-08 9.9E-13 73.9 -1.3 136 42-178 87-255 (382)
41 KOG2120 SCF ubiquitin ligase, 98.3 1E-08 2.3E-13 76.2 -5.1 151 11-174 184-348 (419)
42 KOG0531 Protein phosphatase 1, 98.3 1.3E-07 2.9E-12 75.1 -0.8 150 9-178 92-269 (414)
43 PF12799 LRR_4: Leucine Rich r 98.3 2E-06 4.4E-11 46.1 4.0 38 139-178 1-38 (44)
44 COG5238 RNA1 Ran GTPase-activa 98.2 9.9E-07 2.2E-11 65.1 2.9 167 10-178 28-256 (388)
45 KOG4658 Apoptotic ATPase [Sign 98.2 8E-07 1.7E-11 76.3 2.6 80 43-124 567-646 (889)
46 KOG0531 Protein phosphatase 1, 98.2 2.7E-07 5.8E-12 73.3 -0.9 126 11-154 71-201 (414)
47 KOG4658 Apoptotic ATPase [Sign 98.1 2.1E-06 4.5E-11 73.8 4.0 104 45-150 543-653 (889)
48 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.7E-11 45.1 2.9 36 73-109 2-37 (44)
49 KOG1644 U2-associated snRNP A' 98.1 4.2E-06 9.1E-11 59.2 3.9 60 47-109 42-101 (233)
50 KOG3665 ZYG-1-like serine/thre 98.1 9.5E-07 2.1E-11 74.0 0.5 61 46-108 147-207 (699)
51 KOG4579 Leucine-rich repeat (L 98.0 2.1E-07 4.5E-12 62.0 -3.1 103 47-153 27-137 (177)
52 KOG2982 Uncharacterized conser 98.0 2.9E-06 6.2E-11 63.5 1.7 156 10-177 69-262 (418)
53 KOG2982 Uncharacterized conser 98.0 4.8E-06 1E-10 62.3 2.6 154 6-170 91-285 (418)
54 KOG3665 ZYG-1-like serine/thre 97.9 3.4E-06 7.5E-11 70.8 1.6 130 47-178 122-264 (699)
55 KOG1859 Leucine-rich repeat pr 97.8 9.5E-07 2E-11 73.0 -4.3 124 48-176 165-291 (1096)
56 KOG1644 U2-associated snRNP A' 97.7 5.1E-05 1.1E-09 53.8 4.3 101 13-128 43-148 (233)
57 KOG2123 Uncharacterized conser 97.7 1.4E-06 2.9E-11 64.6 -4.0 94 3-113 10-105 (388)
58 KOG2739 Leucine-rich acidic nu 97.6 4.2E-05 9.2E-10 56.0 2.9 106 44-170 40-149 (260)
59 KOG2739 Leucine-rich acidic nu 97.5 4.3E-05 9.2E-10 56.0 1.8 69 6-85 59-129 (260)
60 KOG2120 SCF ubiquitin ligase, 97.5 1.8E-06 3.9E-11 64.6 -5.8 12 95-106 312-323 (419)
61 PRK15386 type III secretion pr 97.2 0.0027 5.8E-08 50.3 8.5 72 12-108 52-124 (426)
62 COG5238 RNA1 Ran GTPase-activa 97.2 0.00055 1.2E-08 51.0 4.3 159 8-178 88-286 (388)
63 PF13306 LRR_5: Leucine rich r 97.0 0.0047 1E-07 40.5 7.2 61 42-105 7-67 (129)
64 PRK15386 type III secretion pr 96.7 0.0054 1.2E-07 48.6 6.4 121 41-174 46-187 (426)
65 KOG2123 Uncharacterized conser 96.5 0.00015 3.2E-09 54.1 -3.2 84 4-102 33-123 (388)
66 PF13306 LRR_5: Leucine rich r 96.5 0.0096 2.1E-07 39.1 5.6 85 7-106 7-91 (129)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0043 9.2E-08 27.7 1.0 18 98-116 2-19 (22)
68 PF13504 LRR_7: Leucine rich r 94.5 0.03 6.5E-07 23.3 1.4 14 140-153 2-15 (17)
69 smart00370 LRR Leucine-rich re 93.3 0.095 2.1E-06 24.1 2.1 22 138-160 1-22 (26)
70 smart00369 LRR_TYP Leucine-ric 93.3 0.095 2.1E-06 24.1 2.1 22 138-160 1-22 (26)
71 PF13516 LRR_6: Leucine Rich r 91.9 0.072 1.6E-06 24.1 0.7 18 139-156 2-19 (24)
72 KOG1947 Leucine rich repeat pr 91.7 0.083 1.8E-06 42.4 1.2 36 46-81 187-223 (482)
73 KOG0473 Leucine-rich repeat pr 91.1 0.0084 1.8E-07 43.9 -4.4 84 11-109 41-124 (326)
74 KOG3864 Uncharacterized conser 89.5 0.03 6.5E-07 40.0 -2.7 76 48-124 102-180 (221)
75 smart00368 LRR_RI Leucine rich 89.4 0.26 5.7E-06 23.2 1.4 21 139-159 2-22 (28)
76 KOG3864 Uncharacterized conser 87.3 0.084 1.8E-06 37.8 -1.6 34 139-173 151-185 (221)
77 smart00365 LRR_SD22 Leucine-ri 85.7 0.74 1.6E-05 21.4 1.7 14 164-177 2-15 (26)
78 KOG4308 LRR-containing protein 84.9 0.0055 1.2E-07 49.7 -9.7 67 42-108 110-184 (478)
79 KOG0473 Leucine-rich repeat pr 83.4 0.026 5.5E-07 41.5 -5.8 79 42-124 37-115 (326)
80 KOG1947 Leucine rich repeat pr 81.2 0.68 1.5E-05 37.2 0.9 65 44-108 240-307 (482)
81 smart00364 LRR_BAC Leucine-ric 79.7 1.4 3E-05 20.5 1.3 13 73-85 3-15 (26)
82 KOG4341 F-box protein containi 66.4 4.5 9.7E-05 32.5 2.0 12 12-23 216-227 (483)
83 KOG4341 F-box protein containi 57.0 2.8 6.1E-05 33.6 -0.5 38 46-83 345-383 (483)
84 KOG3763 mRNA export factor TAP 55.1 6.6 0.00014 32.6 1.2 64 44-109 215-283 (585)
85 KOG3763 mRNA export factor TAP 53.1 8.4 0.00018 32.1 1.5 15 95-109 217-231 (585)
86 smart00367 LRR_CC Leucine-rich 52.8 10 0.00022 17.2 1.2 12 164-175 2-13 (26)
87 TIGR00864 PCC polycystin catio 32.5 28 0.0006 34.9 1.7 34 53-87 1-34 (2740)
88 TIGR00864 PCC polycystin catio 31.9 31 0.00067 34.6 1.9 32 18-60 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=1e-18 Score=150.71 Aligned_cols=135 Identities=33% Similarity=0.403 Sum_probs=67.6
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+++|++|++++|.+. ...|..+.++++|++|++++|.+.+..|..+..+++|+++++++|.+.+.+|..+..++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred hHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 44555555555555555554 23444455555555555555555555555555555555555555555545555555555
Q ss_pred ccccccc-----cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 121 QLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 121 ~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+|+.+.+ .+..|..++.+++|++|++++|.+.+.+|..+.. +++|+.|++++|.++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLS 297 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeec
Confidence 5544322 2234444444444555555555444433333332 444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.6e-18 Score=149.51 Aligned_cols=155 Identities=34% Similarity=0.425 Sum_probs=95.4
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
.+++|+.|++++|.+.+.+| ..+.++++|++|++++|.++ ...|..+..+++|+.|++++|.+.+..|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p-----------~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIP-----------NSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred cCCCCCEEECccCcccccCC-----------hhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEECcCCccCCcCC
Confidence 34566666666666665666 66777777777777777776 3456666677777777777777766666
Q ss_pred ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc-----cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092 90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164 (179)
Q Consensus 90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 164 (179)
..++.+++|++|++++|.+.+.+|..+..+++|+.+.+ .+..|..+..+++|++|++++|.+.+.+|..+.. ++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~ 308 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQ 308 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CC
Confidence 66777777777777777766666666666666655333 2344445555555555555555555444433332 55
Q ss_pred CCcEEEccCCccc
Q 042092 165 SLEVLDLSYNKLS 177 (179)
Q Consensus 165 ~L~~L~l~~n~l~ 177 (179)
+|+.|++++|.++
T Consensus 309 ~L~~L~l~~n~~~ 321 (968)
T PLN00113 309 NLEILHLFSNNFT 321 (968)
T ss_pred CCcEEECCCCccC
Confidence 5555555555443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=8.2e-18 Score=114.99 Aligned_cols=150 Identities=25% Similarity=0.305 Sum_probs=123.9
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
...+++|-+++|.++ .+| +.+..+.+|+.|++++|.+. ..|..++.+++|+.|++..|++. ++|.
T Consensus 32 ~s~ITrLtLSHNKl~-~vp-----------pnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVP-----------PNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred hhhhhhhhcccCcee-ecC-----------CcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCcc
Confidence 356678889999988 566 68899999999999999995 57777889999999999999988 8899
Q ss_pred cccCCCCccEEEcCCCccCC-CCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 91 SFCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
.|+.++-|+.+|+.+|.+.. .+|..|-.+..|+.+.+.. .+|..++.+++|+.|.+.+|.+.+ .|+++.. +..
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~-lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGD-LTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHH-HHH
Confidence 99999999999999998843 5677777777777655553 467788888889999999998887 7888777 888
Q ss_pred CcEEEccCCccc
Q 042092 166 LEVLDLSYNKLS 177 (179)
Q Consensus 166 L~~L~l~~n~l~ 177 (179)
|++|.+++|+++
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 889998888875
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-16 Score=126.59 Aligned_cols=157 Identities=25% Similarity=0.223 Sum_probs=102.6
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
+..+.++++|+|+.|.++..-- ..+..++.|+.|++++|.|. .+-+..+...++|++|++++|.++..
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~-----------g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNE-----------GWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred eeeecccceeecccchhhhhhc-----------ccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccC
Confidence 4445566666666666653222 44556666677777777665 45555666667777777777777655
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCc---cccccCCCcccEEEcCCCccCCchhhHh
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSI---SSCIFELVNLTKVSLSSNNLSSNVELYM 159 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 159 (179)
.+.+|..+..|+.|+++.|.++...-..|..+++|+.+++. +.+ ...+..+++|+.|++.+|++.. +++-.
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krA 411 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRA 411 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhh
Confidence 55556666677777777777663334455555555554443 222 2345668899999999999988 77666
Q ss_pred hcCCCCCcEEEccCCccc
Q 042092 160 FTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 160 ~~~l~~L~~L~l~~n~l~ 177 (179)
+..+++|++||+.+|.|-
T Consensus 412 fsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hccCcccceecCCCCcce
Confidence 666999999999998773
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=4.3e-16 Score=123.46 Aligned_cols=90 Identities=24% Similarity=0.235 Sum_probs=48.8
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
....+.|+.+||+.|.++ .++. ..+..-.++++|+|++|.|+ ..-...|..+.+|..|.+++|+++..
T Consensus 145 L~~l~alrslDLSrN~is-~i~~----------~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLIS-EIPK----------PSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred HHhHhhhhhhhhhhchhh-cccC----------CCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccccc
Confidence 344556666666666665 3320 23333445566666666665 34444555555666666666666544
Q ss_pred CCccccCCCCccEEEcCCCccC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~ 109 (179)
.+..|+.++.|+.|++.+|.|.
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CHHHhhhcchhhhhhcccccee
Confidence 4444555566666666655554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=9e-17 Score=109.93 Aligned_cols=138 Identities=24% Similarity=0.313 Sum_probs=121.5
Q ss_pred hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092 6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR 85 (179)
Q Consensus 6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (179)
+.-+.+.+|+.|++++|++. .+| .++++++.|++|++.-|.+. ..|..|+.++-|+.||+++|.+.
T Consensus 50 pnia~l~nlevln~~nnqie-~lp-----------~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIE-ELP-----------TSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred CcHHHhhhhhhhhcccchhh-hcC-----------hhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccc
Confidence 34456788999999999998 788 79999999999999999985 68888999999999999999987
Q ss_pred C-CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHh
Q 042092 86 G-SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYM 159 (179)
Q Consensus 86 ~-~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 159 (179)
. .+|..|..+..|+.+++++|++. .+|+.++.+++|+.+.+.. .+|.+++.+..|++|++.+|++.- +|.++
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v-lppel 192 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV-LPPEL 192 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee-cChhh
Confidence 4 57888999999999999999998 8899999999999876654 578999999999999999999987 55443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=1.4e-15 Score=121.91 Aligned_cols=151 Identities=28% Similarity=0.342 Sum_probs=94.0
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
..|+.||||+|++. +.| ..+..-++...|++++|.|. .+....|.+++-|-+||+++|++. .+|+.
T Consensus 103 ~dLt~lDLShNqL~-EvP-----------~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVP-----------TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred ccceeeecchhhhh-hcc-----------hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence 44555555555555 445 45555555555666666653 333344455556666666666655 55666
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
...+..|++|++++|.+.-.-...+-.+.+|+.+.+++ ++|..+..+.+|+.+|++.|.+.. .|+.+.. +++
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~-l~~ 246 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYK-LRN 246 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhh-hhh
Confidence 66666666666666655311112222334444444442 578888888889999999999887 7887777 899
Q ss_pred CcEEEccCCcccc
Q 042092 166 LEVLDLSYNKLSL 178 (179)
Q Consensus 166 L~~L~l~~n~l~~ 178 (179)
|+.|++|+|.|+.
T Consensus 247 LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 247 LRRLNLSGNKITE 259 (1255)
T ss_pred hheeccCcCceee
Confidence 9999999998863
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.45 E-value=6.3e-15 Score=118.19 Aligned_cols=150 Identities=27% Similarity=0.367 Sum_probs=120.8
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI 88 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 88 (179)
..+.+|..+|+|.|.+. .+| +.+.++.+|+.|++++|.|+ . ..-....+.+|++|++++|+++ .+
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vP-----------ecly~l~~LrrLNLS~N~it-e-L~~~~~~W~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVP-----------ECLYKLRNLRRLNLSGNKIT-E-LNMTEGEWENLETLNLSRNQLT-VL 283 (1255)
T ss_pred hhhhhhhhccccccCCC-cch-----------HHHhhhhhhheeccCcCcee-e-eeccHHHHhhhhhhccccchhc-cc
Confidence 34566777788888777 677 78888888899999999887 2 3333467788888899999988 88
Q ss_pred CccccCCCCccEEEcCCCccCC-CCCCcCCCCccccc----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCC
Q 042092 89 PPSFCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLRE----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL 163 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 163 (179)
|..+++++.|+.|.+.+|+++. -+|..++.+..|+. ++.-.-+|+.+.+|+.|+.|.++.|++.. .|+.+.- +
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHl-L 361 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHL-L 361 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-chhhhhh-c
Confidence 8888899999999888888854 46888888888776 34445688899999999999999999987 7877766 8
Q ss_pred CCCcEEEccCCc
Q 042092 164 KSLEVLDLSYNK 175 (179)
Q Consensus 164 ~~L~~L~l~~n~ 175 (179)
+.|+.||+..|+
T Consensus 362 ~~l~vLDlreNp 373 (1255)
T KOG0444|consen 362 PDLKVLDLRENP 373 (1255)
T ss_pred CCcceeeccCCc
Confidence 999999999884
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=1.4e-12 Score=91.02 Aligned_cols=126 Identities=27% Similarity=0.323 Sum_probs=48.1
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchh-ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF-FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
...++.|+|.+|.++. +. .+. .+.+|+.|++++|.++ ... .+..+++|+.|++++|.++. .+
T Consensus 18 ~~~~~~L~L~~n~I~~-Ie------------~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~~-i~ 80 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-IE------------NLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRISS-IS 80 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S--C
T ss_pred cccccccccccccccc-cc------------chhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCCc-cc
Confidence 3467888999998873 33 454 4678889999999886 333 36788899999999999884 44
Q ss_pred ccc-cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCch--hhHhhcCCCCC
Q 042092 90 PSF-CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNV--ELYMFTKLKSL 166 (179)
Q Consensus 90 ~~l-~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~l~~L 166 (179)
+.+ ..+++|+.|++++|++... ..+ ..+..+++|++|++.+|.+.... ...+...+|+|
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l--~~l----------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDL--NEL----------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL 142 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SC--CCC----------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred cchHHhCCcCCEEECcCCcCCCh--HHh----------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence 444 3578999999999988621 111 23345678999999999997632 22344559999
Q ss_pred cEEEc
Q 042092 167 EVLDL 171 (179)
Q Consensus 167 ~~L~l 171 (179)
+.||-
T Consensus 143 k~LD~ 147 (175)
T PF14580_consen 143 KVLDG 147 (175)
T ss_dssp SEETT
T ss_pred heeCC
Confidence 98874
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=1.5e-13 Score=113.76 Aligned_cols=159 Identities=25% Similarity=0.225 Sum_probs=120.0
Q ss_pred hcccCceeeecccccCCCCCCcchhhhhee-----------------cc-cchhccccceEEEeeCccccCCcccccccC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFA-----------------LN-ESLFFILHSQNLNLCGNDFNYSKISYGFSQ 70 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~-----------------~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~ 70 (179)
.+.++|+.|+|..|.+. ++|. ..... .+ ..=..++.|+.|++.+|.+++ ..-..+.+
T Consensus 307 e~~~sL~tLdL~~N~L~-~lp~---~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-~c~p~l~~ 381 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLP-SLPD---NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD-SCFPVLVN 381 (1081)
T ss_pred cccceeeeeeehhcccc-ccch---HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-cchhhhcc
Confidence 45788999999999887 5552 11110 00 011234678888999999984 55556889
Q ss_pred CCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc----cCCccccccCCCcccEEEc
Q 042092 71 FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL----TCSISSCIFELVNLTKVSL 146 (179)
Q Consensus 71 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l----~~~~~~~~~~~~~L~~L~l 146 (179)
..+|+.|++++|.+.......+.++..|+.|++++|+++ .+|..+..+..|+.+-- ....| ++..+++|+.+|+
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence 999999999999999555556788999999999999998 78888888888876333 33556 8888999999999
Q ss_pred CCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092 147 SSNNLSSNVELYMFTKLKSLEVLDLSYNK 175 (179)
Q Consensus 147 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 175 (179)
+.|.+....-.+ ....++|++||+++|.
T Consensus 460 S~N~L~~~~l~~-~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 460 SCNNLSEVTLPE-ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ccchhhhhhhhh-hCCCcccceeeccCCc
Confidence 999998844332 2335899999999996
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=5e-14 Score=107.55 Aligned_cols=131 Identities=25% Similarity=0.328 Sum_probs=86.9
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..++++.++..+++.+|+++ ...+. .-.|+.|+.+|...|-+. .+|+.++.+.+|+.+++.+|++. .+| .|..+.
T Consensus 154 ~~~~~~~~l~~l~~~~n~l~-~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs 228 (565)
T KOG0472|consen 154 EDMVNLSKLSKLDLEGNKLK-ALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS 228 (565)
T ss_pred hHHHHHHHHHHhhccccchh-hCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccH
Confidence 55666666666666666665 23333 334666666666666655 66666677777777777777766 445 455555
Q ss_pred cccccccc----CCcccccc-CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 121 QLREKKLT----CSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 121 ~L~~~~l~----~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
.|....+. ..+|.+.. .++++.+||+.+|++++ .|.+++. +++|..||+++|.|++
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~cl-LrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL-LRSLERLDLSNNDISS 289 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHH-hhhhhhhcccCCcccc
Confidence 55553333 23454444 67888899999999988 7777776 8889999999998875
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.28 E-value=3.5e-13 Score=103.00 Aligned_cols=147 Identities=23% Similarity=0.335 Sum_probs=107.8
Q ss_pred ceeeecccccCCCCCCcchhhhheecccchhccccc-eEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092 14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF 92 (179)
Q Consensus 14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l 92 (179)
+...+++.|++. ++| ..+..+..+ +.+.+++|.+. ..+..++.+++|..|++++|.+. .+|..+
T Consensus 390 Vt~VnfskNqL~-elP-----------k~L~~lkelvT~l~lsnn~is--fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELP-----------KRLVELKELVTDLVLSNNKIS--FVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred eEEEecccchHh-hhh-----------hhhHHHHHHHHHHHhhcCccc--cchHHHHhhhcceeeecccchhh-hcchhh
Confidence 344555555555 444 455555444 34566666664 45666788899999999999888 778888
Q ss_pred cCCCCccEEEcCCCccCCCCCCcCCCCccccc-----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092 93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~-----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 167 (179)
+.+-.||+++++.|++. .+|..+..+..++. +.+...-++.+..+.+|..||+.+|.+.. +|+.++. |.+|+
T Consensus 455 ~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~Lgn-mtnL~ 531 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGN-MTNLR 531 (565)
T ss_pred hhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhcc-cccee
Confidence 88888999999999887 66765554444433 34444445568888999999999999998 7777666 99999
Q ss_pred EEEccCCcccc
Q 042092 168 VLDLSYNKLSL 178 (179)
Q Consensus 168 ~L~l~~n~l~~ 178 (179)
+|++++|+|.-
T Consensus 532 hLeL~gNpfr~ 542 (565)
T KOG0472|consen 532 HLELDGNPFRQ 542 (565)
T ss_pred EEEecCCccCC
Confidence 99999999863
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=1.3e-12 Score=99.60 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=8.4
Q ss_pred ccCceeeecccccCC
Q 042092 11 NCAFMNRLLHYSCLS 25 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~ 25 (179)
+++|+.|++++|.+.
T Consensus 80 ~~~L~~L~l~~~~~~ 94 (319)
T cd00116 80 GCGLQELDLSDNALG 94 (319)
T ss_pred cCceeEEEccCCCCC
Confidence 445555566555554
No 14
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=2.4e-11 Score=100.62 Aligned_cols=94 Identities=33% Similarity=0.476 Sum_probs=81.9
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF 92 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l 92 (179)
.++.|+|++|.+.+.+| ..+..+++|+.|++++|.+. ...|..+..+++|+.|++++|.+++..|+.+
T Consensus 419 ~v~~L~L~~n~L~g~ip-----------~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIP-----------NDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCccccCC-----------HHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 37788999999988888 78889999999999999997 4677778899999999999999998889989
Q ss_pred cCCCCccEEEcCCCccCCCCCCcCCC
Q 042092 93 CNLTQLMHLDLSSNILSGHIPSSLSN 118 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~~~~~~ 118 (179)
+.+++|++|++++|.+.+.+|..+..
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhh
Confidence 99999999999999998888876654
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=1.9e-12 Score=102.62 Aligned_cols=132 Identities=25% Similarity=0.411 Sum_probs=104.2
Q ss_pred cccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCC
Q 042092 39 LNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSN 118 (179)
Q Consensus 39 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~ 118 (179)
++..+.++..|+.++++.|.++ ..|..+..|+ |+.|-+++|+++ .+|+.++.+.+|..+|.+.|.+. .+|..+..
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~ 187 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY 187 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh
Confidence 3367788888888888888885 4555455555 788888888887 77888887788888888888887 66777777
Q ss_pred CcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 119 LEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 119 l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+.+|+.+++.. .+|.++..+ .|..||+++|++.. +|.+|.. |++|++|-+.+|+++.
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~-iPv~fr~-m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY-LPVDFRK-MRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceee-cchhhhh-hhhheeeeeccCCCCC
Confidence 77777766653 567777744 48999999999998 8888776 9999999999999875
No 16
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=6e-11 Score=98.29 Aligned_cols=107 Identities=32% Similarity=0.439 Sum_probs=62.4
Q ss_pred ceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc
Q 042092 49 SQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT 128 (179)
Q Consensus 49 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~ 128 (179)
++.|++++|.+. ...+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..
T Consensus 420 v~~L~L~~n~L~-g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~------------- 485 (623)
T PLN03150 420 IDGLGLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES------------- 485 (623)
T ss_pred EEEEECCCCCcc-ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-------------
Confidence 455566666655 344555556666666666666665555655666666666666666655555544
Q ss_pred CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092 129 CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK 175 (179)
Q Consensus 129 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 175 (179)
++.+++|++|++++|.+.+.+|..+.....++..+++++|.
T Consensus 486 ------l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 ------LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ------HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 44455666666666666666665554433455566666554
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2.7e-11 Score=84.58 Aligned_cols=113 Identities=30% Similarity=0.365 Sum_probs=40.9
Q ss_pred chhccccceEEEeeCccccCCccccccc-CCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFS-QFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
.+.+..++++|++.+|.|+ .... +. .+.+|+.|++++|.++.. +.+..++.|++|++++|.+.. +.+.+.
T Consensus 14 ~~~n~~~~~~L~L~~n~I~--~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~--- 84 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIS--TIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLD--- 84 (175)
T ss_dssp ------------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHH---
T ss_pred ccccccccccccccccccc--cccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchH---
Confidence 4556667899999999996 3333 44 688999999999999844 357788999999999999973 221111
Q ss_pred ccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 121 QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 121 ~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
..+++|++|++++|.|.+...-...+.+++|+.|++.+|+++.
T Consensus 85 ---------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 85 ---------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp ---------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ---------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 1357899999999999884333334559999999999999874
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=1e-10 Score=98.07 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccC-CCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092 96 TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174 (179)
Q Consensus 96 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (179)
.+|+.|++++|.+. .+|... ++|+.+.++++....+.. ...|+.|++++|.++. +|..+.. +++|+.|++++|
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~-LP~sl~~-L~~L~~LdLs~N 455 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIH-LSSETTVNLEGN 455 (788)
T ss_pred cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCCCCcchhhhhhhhhccCcccc-cChHHhh-ccCCCeEECCCC
Confidence 35677777777766 345433 234443443322222221 2367888999999886 7777666 999999999999
Q ss_pred cccc
Q 042092 175 KLSL 178 (179)
Q Consensus 175 ~l~~ 178 (179)
+++|
T Consensus 456 ~Ls~ 459 (788)
T PRK15387 456 PLSE 459 (788)
T ss_pred CCCc
Confidence 9986
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=8.2e-13 Score=100.65 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=43.4
Q ss_pred ceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEE-eccCCCCCCCCccc
Q 042092 14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILN-LRHYNFRGSIPPSF 92 (179)
Q Consensus 14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~-l~~~~l~~~~~~~l 92 (179)
.+.++|..|+|+...+ .+|..+++|++|++++|.|+ .+.+.+|.++.+|..|. +++|+|++.....|
T Consensus 69 tveirLdqN~I~~iP~-----------~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPP-----------GAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred ceEEEeccCCcccCCh-----------hhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 3456666666663333 56666666666666666666 45666666666665443 33366664433344
Q ss_pred cCCCCccEEEcC
Q 042092 93 CNLTQLMHLDLS 104 (179)
Q Consensus 93 ~~l~~L~~l~l~ 104 (179)
.++.+++.|.+.
T Consensus 137 ~gL~slqrLllN 148 (498)
T KOG4237|consen 137 GGLSSLQRLLLN 148 (498)
T ss_pred hhHHHHHHHhcC
Confidence 444444433333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=1.3e-11 Score=94.07 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=50.4
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCC---ccEEEeccCCCCC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRS---LTILNLRHYNFRG 86 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~---L~~L~l~~~~l~~ 86 (179)
..+.+++++++++.+.+ .+. ....+...+..+++|+.|++++|.+. ...+..+..+.+ |+.|++++|.+++
T Consensus 49 ~~~~l~~l~l~~~~~~~-~~~----~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 49 PQPSLKELCLSLNETGR-IPR----GLQSLLQGLTKGCGLQELDLSDNALG-PDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred hCCCceEEeccccccCC-cch----HHHHHHHHHHhcCceeEEEccCCCCC-hhHHHHHHHHhccCcccEEEeeCCccch
Confidence 34557777887776652 110 00001134555667777777777765 223333333333 7777777776652
Q ss_pred C----CCccccCC-CCccEEEcCCCccC
Q 042092 87 S----IPPSFCNL-TQLMHLDLSSNILS 109 (179)
Q Consensus 87 ~----~~~~l~~l-~~L~~l~l~~n~l~ 109 (179)
. ....+..+ ++|+.+++++|.+.
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 1 11223344 56677777766665
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=9.6e-12 Score=92.33 Aligned_cols=127 Identities=28% Similarity=0.291 Sum_probs=76.1
Q ss_pred ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092 47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~ 126 (179)
..|+++|+++|.|+ .+..++.=.+.++.|++++|.+..+ ..+..+++|+.+|+++|.++ .+-++-..+-+++.++
T Consensus 284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh--hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 44666677777664 3445455556667777777766522 22556666777777777665 4444444445555555
Q ss_pred ccCCccccc---cCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 127 LTCSISSCI---FELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 127 l~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+.++..+.+ .++.+|..||+.+|+|.......-...+|-|+++.+.+|++.+
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 555544443 3455778888888887662222222337777888888887764
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.09 E-value=1.1e-09 Score=96.54 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=29.1
Q ss_pred hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCC
Q 042092 43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN 106 (179)
Q Consensus 43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n 106 (179)
+..+++|++|++++|... ...|..+..+++|+.|++++|.....+|..+ .+++|+.|++++|
T Consensus 653 ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred cccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 444555555555555433 2344445555555555555543222334332 3444444444443
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.09 E-value=1.1e-10 Score=67.64 Aligned_cols=60 Identities=33% Similarity=0.467 Sum_probs=37.7
Q ss_pred cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCcc
Q 042092 48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108 (179)
Q Consensus 48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l 108 (179)
+|++|++++|.++ ...+..|.++++|++|++++|.++...+..|..+++|+++++++|++
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566666666665 34445566666666666666666655555666666666666666653
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=6.8e-10 Score=93.28 Aligned_cols=117 Identities=19% Similarity=0.307 Sum_probs=58.3
Q ss_pred cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCC-C-------
Q 042092 48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSN-L------- 119 (179)
Q Consensus 48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~-l------- 119 (179)
.|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|++|++++|.+. .+|..+.. +
T Consensus 242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRIT--ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccC--cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcC
Confidence 3445555555443 2222221 35666666666666 3444432 36677777777665 33332210 0
Q ss_pred -----------cccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 120 -----------EQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 120 -----------~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
++|+.+.+..+ +|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|++++
T Consensus 314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l---p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 314 NSLTALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV-LPETL---PPTITTLDVSRNALTN 381 (754)
T ss_pred CccccCCccccccceeccccCCccccCChhh--cCcccEEECCCCCCCc-CChhh---cCCcCEEECCCCcCCC
Confidence 11222111111 12111 1467777777777765 55433 3467788888887753
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.07 E-value=6.4e-10 Score=93.43 Aligned_cols=118 Identities=20% Similarity=0.305 Sum_probs=74.6
Q ss_pred ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc-------------------CCCCccEEEcCCCc
Q 042092 47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC-------------------NLTQLMHLDLSSNI 107 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-------------------~l~~L~~l~l~~n~ 107 (179)
..|+.|++++|.++ ..|..+. ++|+.|++++|.++. +|..+. ..++|++|++++|.
T Consensus 262 s~L~~L~Ls~N~L~--~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 262 SALQSLDLFHNKIS--CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA 336 (754)
T ss_pred CCCCEEECcCCccC--ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence 35777777777775 2343332 467777777776663 232211 12467778888887
Q ss_pred cCCCCCCcCCCCcccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 108 LSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 108 l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+. .+|..+. ++|+.+.+.++ +|..+ .+.|++|++++|.+.. +|..+.. +|+.|++++|++++
T Consensus 337 Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~~---sL~~LdLs~N~L~~ 402 (754)
T PRK15370 337 LT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTN-LPENLPA---ALQIMQASRNNLVR 402 (754)
T ss_pred cc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCC-CCHhHHH---HHHHHhhccCCccc
Confidence 76 4555442 45665555432 33333 3589999999999997 6665443 68899999998864
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.3e-11 Score=91.86 Aligned_cols=161 Identities=22% Similarity=0.225 Sum_probs=111.4
Q ss_pred hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092 6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR 85 (179)
Q Consensus 6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (179)
..|+.+++|+.|+++.|.+..-..+ ..-..+++++.|.++.|.+++.........+++|+.|++.+|...
T Consensus 166 ~i~eqLp~Le~LNls~Nrl~~~~~s----------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 166 KIAEQLPSLENLNLSSNRLSNFISS----------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred HHHHhcccchhcccccccccCCccc----------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence 4467788888888888887632210 122357888899999999987666777778899999999999532
Q ss_pred CCCCccccCCCCccEEEcCCCccCCC-CCCcCCCCcccccccccCC------cccc-----ccCCCcccEEEcCCCccCC
Q 042092 86 GSIPPSFCNLTQLMHLDLSSNILSGH-IPSSLSNLEQLREKKLTCS------ISSC-----IFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 86 ~~~~~~l~~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~~~l~~~------~~~~-----~~~~~~L~~L~l~~n~~~~ 153 (179)
.+.......+..|+.||+++|.+-+. .-...+.++.|..++++.. .|+. .-.+++|++|+++.|++.+
T Consensus 236 ~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 236 LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 24444455678899999999987522 2255677788877666532 1221 2346899999999999976
Q ss_pred chh-hHhhcCCCCCcEEEccCCccc
Q 042092 154 NVE-LYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 154 ~~~-~~~~~~l~~L~~L~l~~n~l~ 177 (179)
... ..+.. +++|+.|.+..|.++
T Consensus 316 w~sl~~l~~-l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 316 WRSLNHLRT-LENLKHLRITLNYLN 339 (505)
T ss_pred ccccchhhc-cchhhhhhccccccc
Confidence 322 23333 778888887777665
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-11 Score=101.68 Aligned_cols=147 Identities=28% Similarity=0.322 Sum_probs=81.2
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.|+.|.+.+|.+++..- +.+..+.+|+.|+|++|.+. ......+.+++.|+.|++++|+++ .+|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~-----------p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCF-----------PVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred HHHHHHHHhcCcccccch-----------hhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 455566666666664433 35556666666666666664 333444556666666666666666 55555
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc-----ccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS-----SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 166 (179)
+.++..|++|....|.+. ..| .+.+++.|+..+++.+.. ..-..+++|++||+++|.-.. .....+..++++
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV-FDHKTLKVLKSL 502 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc-cchhhhHHhhhh
Confidence 556666666666666555 445 455555555544443211 111223678888888887433 333333336666
Q ss_pred cEEEccCC
Q 042092 167 EVLDLSYN 174 (179)
Q Consensus 167 ~~L~l~~n 174 (179)
...++.-+
T Consensus 503 ~~~~i~~~ 510 (1081)
T KOG0618|consen 503 SQMDITLN 510 (1081)
T ss_pred hheecccC
Confidence 66665554
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.02 E-value=2.8e-09 Score=94.08 Aligned_cols=124 Identities=22% Similarity=0.250 Sum_probs=68.8
Q ss_pred ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092 45 FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE 124 (179)
Q Consensus 45 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 124 (179)
...+|+.|++++|.+. ..+..+..+++|+.++++++.....+| .++.+++|++|++++|.....+|..+..+++|+.
T Consensus 609 ~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 3456667777777664 344445666777777776654332444 3556667777777766544456666666666666
Q ss_pred ccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092 125 KKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176 (179)
Q Consensus 125 ~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 176 (179)
+++.+ .+|..+ .+++|+.|++++|.....+|. ...+|+.|+++.|.+
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAI 737 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcc
Confidence 55543 233322 345566666666544332332 133455555555543
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=2.9e-11 Score=92.33 Aligned_cols=127 Identities=23% Similarity=0.325 Sum_probs=106.3
Q ss_pred ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEc-CCCccCCCCCCcCCCCccccc-
Q 042092 47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDL-SSNILSGHIPSSLSNLEQLRE- 124 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l-~~n~l~~~~~~~~~~l~~L~~- 124 (179)
+..+.+.|..|.|+ .+.+.+|..+++|+.||+++|.|+.+.|..|..++++-.+.+ ++|+|++..-+.|+.+..++.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45678999999998 688999999999999999999999999999999988776655 559998665677888888776
Q ss_pred ----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092 125 ----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK 175 (179)
Q Consensus 125 ----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 175 (179)
+.+.....+.+..+++++.|.+.+|.+.. +++..+..+.+++.+.+..|+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCc
Confidence 34455667788899999999999999987 777556668888888888877
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=6.8e-10 Score=64.26 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=54.0
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCC
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNF 84 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l 84 (179)
++|++|++++|.+....+ ..+..+++|++|++++|.++ ...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~-----------~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-----------DSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT-----------TTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH-----------HHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999995444 68899999999999999997 56778899999999999999975
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.97 E-value=2.9e-09 Score=89.48 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=40.3
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccccc-----------------CCCCcc
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFS-----------------QFRSLT 75 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-----------------~l~~L~ 75 (179)
+++.|++++|.++ .+| . ..+.|++|++++|.++ ..|.... -.++|+
T Consensus 223 ~L~~L~L~~N~Lt-~LP-----------~---lp~~Lk~LdLs~N~Lt--sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~ 285 (788)
T PRK15387 223 HITTLVIPDNNLT-SLP-----------A---LPPELRTLEVSGNQLT--SLPVLPPGLLELSIFSNPLTHLPALPSGLC 285 (788)
T ss_pred CCCEEEccCCcCC-CCC-----------C---CCCCCcEEEecCCccC--cccCcccccceeeccCCchhhhhhchhhcC
Confidence 5677777777776 455 2 1356666777776665 2222110 012334
Q ss_pred EEEeccCCCCCCCCccccCCCCccEEEcCCCccC
Q 042092 76 ILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 76 ~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~ 109 (179)
.|++++|+++ .+|. ..++|+.|++++|.+.
T Consensus 286 ~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 286 KLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred EEECcCCccc-cccc---cccccceeECCCCccc
Confidence 4444555444 2232 1256777777777776
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=6.1e-10 Score=87.66 Aligned_cols=148 Identities=29% Similarity=0.421 Sum_probs=86.9
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccc-cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFIL-HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
...++.+++.+|.++ .++ ....... +|+.|++++|.+. ..+..+..++.|+.|++++|++. ..|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~-----------~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~ 179 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIP-----------PLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLP 179 (394)
T ss_pred ccceeEEecCCcccc-cCc-----------cccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhh
Confidence 345666777777666 444 3344442 5666666666664 23333456666666666666665 334
Q ss_pred ccccCCCCccEEEcCCCccCCCCCCc-----------------------CCCCcccccccccC----CccccccCCCccc
Q 042092 90 PSFCNLTQLMHLDLSSNILSGHIPSS-----------------------LSNLEQLREKKLTC----SISSCIFELVNLT 142 (179)
Q Consensus 90 ~~l~~l~~L~~l~l~~n~l~~~~~~~-----------------------~~~l~~L~~~~l~~----~~~~~~~~~~~L~ 142 (179)
......+.|+.+++++|++. .+|.. +..+.++....+.. ..+..++.++.++
T Consensus 180 ~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 180 KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258 (394)
T ss_pred hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccc
Confidence 43334555666666666655 33332 22222222222222 1246667778899
Q ss_pred EEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
.|++++|.++. ++. .....+++.|++++|.++
T Consensus 259 ~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 259 TLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eeccccccccc-ccc--ccccCccCEEeccCcccc
Confidence 99999999988 444 344889999999998765
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=2.1e-09 Score=84.65 Aligned_cols=118 Identities=30% Similarity=0.380 Sum_probs=79.9
Q ss_pred eeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCC-CccEEEeccCCCCCCCCccccC
Q 042092 16 NRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFR-SLTILNLRHYNFRGSIPPSFCN 94 (179)
Q Consensus 16 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~ 94 (179)
.++++.+.+..... .+..++.++.+++.+|.++ ..+....... +|+.|++++|.+. ..|..+..
T Consensus 97 ~l~~~~~~~~~~~~------------~~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLRSNIS------------ELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN 161 (394)
T ss_pred eeeccccccccCch------------hhhcccceeEEecCCcccc--cCccccccchhhcccccccccchh-hhhhhhhc
Confidence 46677776642222 4556688999999999997 3444445553 9999999999998 66677889
Q ss_pred CCCccEEEcCCCccCCCCCCcCCCCcccccccccCC----ccccccCCCcccEEEcCCC
Q 042092 95 LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSN 149 (179)
Q Consensus 95 l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n 149 (179)
++.|+.|+++.|.+. .+|......+.|+...+++. +|........|+++.+++|
T Consensus 162 l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 999999999999998 55654445566665545442 2222222233555555555
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=3e-10 Score=90.49 Aligned_cols=146 Identities=25% Similarity=0.343 Sum_probs=122.0
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
..-...|++.|.+. ++| ..+..+..|+.+.+..|.+- ..+.++..+..|.++|++.|+++ .+|..
T Consensus 75 tdt~~aDlsrNR~~-elp-----------~~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS-~lp~~ 139 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELP-----------EEACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLS-HLPDG 139 (722)
T ss_pred cchhhhhccccccc-cCc-----------hHHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhh-cCChh
Confidence 34456788888887 788 77888888999999999984 67888999999999999999999 88888
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 167 (179)
++.++ |+.+-+++|+++ .+|+.++....|..+.++. .+|..++.+.+|+.|.+..|++.. +|.++.. + .|.
T Consensus 140 lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~-L-pLi 214 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-L-PLI 214 (722)
T ss_pred hhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-C-cee
Confidence 88877 788889999998 8898888777787766664 567788889999999999999998 7776652 4 577
Q ss_pred EEEccCCccc
Q 042092 168 VLDLSYNKLS 177 (179)
Q Consensus 168 ~L~l~~n~l~ 177 (179)
.||++.|+++
T Consensus 215 ~lDfScNkis 224 (722)
T KOG0532|consen 215 RLDFSCNKIS 224 (722)
T ss_pred eeecccCcee
Confidence 9999999885
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=7.6e-10 Score=90.58 Aligned_cols=122 Identities=26% Similarity=0.349 Sum_probs=79.5
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc-c
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP-S 91 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~ 91 (179)
.|...++++|.+. .+. .++..++.++.|+|+.|+++ ... .+..+++|+.||+++|.+... |. .
T Consensus 165 ~L~~a~fsyN~L~-~mD-----------~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~~v-p~l~ 228 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMD-----------ESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLRHV-PQLS 228 (1096)
T ss_pred hHhhhhcchhhHH-hHH-----------HHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhccc-cccc
Confidence 4556677777776 455 68888899999999999986 344 577889999999999988733 32 2
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccc------cCCCcccEEEcCCCccCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCI------FELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~------~~~~~L~~L~l~~n~~~~ 153 (179)
...+ .|+.|.+++|.++. ...+.++.+|+.++++.++...+ +.+..|+.|.+.+|.+-.
T Consensus 229 ~~gc-~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 229 MVGC-KLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhh-hheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 2233 38889999998762 23455555555555554433322 223445666666665544
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.9e-09 Score=80.08 Aligned_cols=159 Identities=21% Similarity=0.101 Sum_probs=102.3
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
.++.++.|||+.|-+....+ +......+++|+.|+++.|.+.-......-..+++|+.|.++.|.++...-
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~---------v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V 214 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFP---------VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDV 214 (505)
T ss_pred hCCcceeecchhhhHHhHHH---------HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHH
Confidence 35778888998888775444 123345678899999999987411111112356888889999998874322
Q ss_pred cc-ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc------cccccCCCcccEEEcCCCccCCc-hhh----
Q 042092 90 PS-FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI------SSCIFELVNLTKVSLSSNNLSSN-VEL---- 157 (179)
Q Consensus 90 ~~-l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~------~~~~~~~~~L~~L~l~~n~~~~~-~~~---- 157 (179)
.. +..+|+++.|++..|.....-.....-+..|+.+++.++. ....+.++.|+.|.++.+.+.+. .|.
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch
Confidence 22 3457899999998885322222223334445555555432 23456788999999999988772 122
Q ss_pred HhhcCCCCCcEEEccCCccc
Q 042092 158 YMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 158 ~~~~~l~~L~~L~l~~n~l~ 177 (179)
+....+++|+.|+++.|++.
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhcccccceeeecccCccc
Confidence 12345889999999999883
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=3.5e-08 Score=74.59 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=18.1
Q ss_pred cCCCcccEEEcCCCccCCchh----hHhhcCCCCCcEEEccCCccc
Q 042092 136 FELVNLTKVSLSSNNLSSNVE----LYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 136 ~~~~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~l~ 177 (179)
..|+.|+++++++|.+..... ..+....++|+++++.+|.|+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 334445555555555444221 122233444555555554443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2.4e-08 Score=74.60 Aligned_cols=106 Identities=27% Similarity=0.296 Sum_probs=83.1
Q ss_pred ccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccC----CCcc
Q 042092 66 YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFE----LVNL 141 (179)
Q Consensus 66 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~----~~~L 141 (179)
..+..|.-|+.+|+++|.++ .+.++..-.|.++.++++.|.+. .+ +.++.+++|+++.++++....+.. +-+.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 34567888999999999999 66778888899999999999997 32 337888888888888876655543 4578
Q ss_pred cEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 142 TKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 142 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
..|.+++|.+.+ .. .+. ++-+|..||+++|+|.
T Consensus 355 KtL~La~N~iE~-LS-GL~-KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 355 KTLKLAQNKIET-LS-GLR-KLYSLVNLDLSSNQIE 387 (490)
T ss_pred eeeehhhhhHhh-hh-hhH-hhhhheeccccccchh
Confidence 899999998876 22 223 3888999999999885
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.46 E-value=4e-09 Score=69.96 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=78.6
Q ss_pred chhhhcccCceeeecccccCCCCCCcchhhhheecccchh---ccccceEEEeeCccccCCccccccc-CCCCccEEEec
Q 042092 5 LSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF---FILHSQNLNLCGNDFNYSKISYGFS-QFRSLTILNLR 80 (179)
Q Consensus 5 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~ 80 (179)
+..|+....+-.+||+.|++- .++ +.+. ....|+..++++|.+. .+|+.|. ..+..+++++.
T Consensus 20 VercedakE~h~ldLssc~lm-~i~-----------davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~ 85 (177)
T KOG4579|consen 20 VERCEDAKELHFLDLSSCQLM-YIA-----------DAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLA 85 (177)
T ss_pred HHhhHHHHHhhhcccccchhh-HHH-----------HHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcc
Confidence 456777788888899988875 455 4443 3456777899999995 4555554 56788999999
Q ss_pred cCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092 81 HYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125 (179)
Q Consensus 81 ~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~ 125 (179)
+|.++ ..|..+..++.|+.++++.|.+. ..|..+.++.++..+
T Consensus 86 ~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 86 NNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred hhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 99999 66777999999999999999987 666666555555443
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.35 E-value=4.6e-08 Score=73.94 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=90.6
Q ss_pred chhccccceEEEeeCccccCCcccc----cccCCCCccEEEeccCCCCCCCCcc-------------ccCCCCccEEEcC
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISY----GFSQFRSLTILNLRHYNFRGSIPPS-------------FCNLTQLMHLDLS 104 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~-------------l~~l~~L~~l~l~ 104 (179)
++..+++|+.++||.|.+. ...++ .+..+..|+.|++.+|.+...-... .+.-+.|+.+.+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G-~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFG-PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccC-ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 4555678999999999886 33332 3456788999999999887322222 2234788999999
Q ss_pred CCccCCC----CCCcCCCCccccccccc--CCcc-------ccccCCCcccEEEcCCCccCCchhhHh---hcCCCCCcE
Q 042092 105 SNILSGH----IPSSLSNLEQLREKKLT--CSIS-------SCIFELVNLTKVSLSSNNLSSNVELYM---FTKLKSLEV 168 (179)
Q Consensus 105 ~n~l~~~----~~~~~~~l~~L~~~~l~--~~~~-------~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~l~~L~~ 168 (179)
+|++... +...++.++.|+...+. +..+ ..+..++.|++||+.+|.|+......+ ...|++|++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 9988532 22345555566554443 2222 235678999999999999987433222 334888999
Q ss_pred EEccCCcccc
Q 042092 169 LDLSYNKLSL 178 (179)
Q Consensus 169 L~l~~n~l~~ 178 (179)
+++++|.+..
T Consensus 246 l~l~dcll~~ 255 (382)
T KOG1909|consen 246 LNLGDCLLEN 255 (382)
T ss_pred eccccccccc
Confidence 9999998753
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1e-08 Score=76.22 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=100.5
Q ss_pred ccCceeeecccccCCC-CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCC-CCCC-
Q 042092 11 NCAFMNRLLHYSCLSN-SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYN-FRGS- 87 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~-l~~~- 87 (179)
..+|+.|||++..++. .+. .-+..|..|+.+.+.++.+. +.....+.+-..|+.++++++. ++..
T Consensus 184 rsRlq~lDLS~s~it~stl~-----------~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLH-----------GILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhhhHHhhcchhheeHHHHH-----------HHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhH
Confidence 4568999999988873 233 45677899999999999997 4455567888999999999975 4421
Q ss_pred CCccccCCCCccEEEcCCCccCCC-CCCcCCCC-cccccccccCC--------ccccccCCCcccEEEcCCCccCCch-h
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGH-IPSSLSNL-EQLREKKLTCS--------ISSCIFELVNLTKVSLSSNNLSSNV-E 156 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~-~~~~~~~l-~~L~~~~l~~~--------~~~~~~~~~~L~~L~l~~n~~~~~~-~ 156 (179)
..-.+..+..|+.|+++|+.+... +.-.+... .+|..++++|. +..-..++|.|.+||+++|...... .
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 112356789999999999987422 11111111 13444555542 2223357889999999988654433 3
Q ss_pred hHhhcCCCCCcEEEccCC
Q 042092 157 LYMFTKLKSLEVLDLSYN 174 (179)
Q Consensus 157 ~~~~~~l~~L~~L~l~~n 174 (179)
..+++ ++-|++|.++.|
T Consensus 332 ~~~~k-f~~L~~lSlsRC 348 (419)
T KOG2120|consen 332 QEFFK-FNYLQHLSLSRC 348 (419)
T ss_pred HHHHh-cchheeeehhhh
Confidence 34444 888888887765
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.3e-07 Score=75.08 Aligned_cols=150 Identities=28% Similarity=0.234 Sum_probs=98.1
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI 88 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 88 (179)
....+++.+++.+|.+.. +. ..+..+.+|++|++++|.|+ . .. .+..++.|+.|++.+|.+...
T Consensus 92 ~~~~~l~~l~l~~n~i~~-i~-----------~~l~~~~~L~~L~ls~N~I~-~-i~-~l~~l~~L~~L~l~~N~i~~~- 155 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-IE-----------NLLSSLVNLQVLDLSFNKIT-K-LE-GLSTLTLLKELNLSGNLISDI- 155 (414)
T ss_pred ccccceeeeeccccchhh-cc-----------cchhhhhcchheeccccccc-c-cc-chhhccchhhheeccCcchhc-
Confidence 456788899999999883 43 23778899999999999996 2 22 256777899999999988743
Q ss_pred CccccCCCCccEEEcCCCccCCCCCCc-CCCCcccccccccC----------------------CccccccCCC---c--
Q 042092 89 PPSFCNLTQLMHLDLSSNILSGHIPSS-LSNLEQLREKKLTC----------------------SISSCIFELV---N-- 140 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~-~~~l~~L~~~~l~~----------------------~~~~~~~~~~---~-- 140 (179)
..+..+..|+.+++++|.+...-+ . ...+.+++...+.+ +....+..+. .
T Consensus 156 -~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~ 233 (414)
T KOG0531|consen 156 -SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLH 233 (414)
T ss_pred -cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHH
Confidence 344557889999999998874333 1 34444444422221 1111122222 2
Q ss_pred ccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 141 LTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 141 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
|+.+++++|++.. .+. ....+..+..+++..|.++.
T Consensus 234 L~~l~l~~n~i~~-~~~-~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 234 LRELYLSGNRISR-SPE-GLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhcccCcccc-ccc-cccccccccccchhhccccc
Confidence 6788888888876 221 23347777888888877653
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=2e-06 Score=46.10 Aligned_cols=38 Identities=34% Similarity=0.438 Sum_probs=30.7
Q ss_pred CcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 139 VNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 139 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
++|++|++++|.|++ ++..+.. +++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~-l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSN-LPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTT-CTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhC-CCCCCEEEecCCCCCC
Confidence 478999999999998 7665555 9999999999999863
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=9.9e-07 Score=65.15 Aligned_cols=167 Identities=19% Similarity=0.123 Sum_probs=103.9
Q ss_pred cccCceeeecccccCCCCCCcchhhhhee---------------------------cccchhccccceEEEeeCccccCC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFA---------------------------LNESLFFILHSQNLNLCGNDFNYS 62 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~---------------------------~~~~~~~l~~L~~L~l~~n~i~~~ 62 (179)
....++.++||+|.+...-..|.+..+.. .-+.+..|++++.+++|.|.|. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg-~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG-S 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-c
Confidence 35667788888888765443332222221 1135677899999999999886 4
Q ss_pred ccccc----ccCCCCccEEEeccCCCCCCCCcccc-------------CCCCccEEEcCCCccCCCCC-----CcCCCCc
Q 042092 63 KISYG----FSQFRSLTILNLRHYNFRGSIPPSFC-------------NLTQLMHLDLSSNILSGHIP-----SSLSNLE 120 (179)
Q Consensus 63 ~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~l~-------------~l~~L~~l~l~~n~l~~~~~-----~~~~~l~ 120 (179)
..+.. +++-+.|..|.+++|.+..+....++ .-|.|+.+.+.+|++. ..+ ..++...
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 44443 34557888999999987743332222 2378999999999885 222 1233344
Q ss_pred cccccccc--CCcccc--------ccCCCcccEEEcCCCccCCchhhH---hhcCCCCCcEEEccCCcccc
Q 042092 121 QLREKKLT--CSISSC--------IFELVNLTKVSLSSNNLSSNVELY---MFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 121 ~L~~~~l~--~~~~~~--------~~~~~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~ 178 (179)
+|+..++. +.-|.. +..+.+|+.||+.+|.++-..... ..+.|+.|++|++..|-++.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 45544443 344442 245778999999999887643322 22347788888888887653
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.20 E-value=8e-07 Score=76.28 Aligned_cols=80 Identities=26% Similarity=0.337 Sum_probs=42.6
Q ss_pred hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092 43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL 122 (179)
Q Consensus 43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L 122 (179)
|..++.|+.||+++|.-. ...|..++.+-+|++|+++++.+. .+|..+.++..|.+|++..+.....+|.....+.+|
T Consensus 567 f~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 444555666666654432 345555555666666666666555 555555555556666555554332334444445555
Q ss_pred cc
Q 042092 123 RE 124 (179)
Q Consensus 123 ~~ 124 (179)
++
T Consensus 645 r~ 646 (889)
T KOG4658|consen 645 RV 646 (889)
T ss_pred cE
Confidence 54
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=2.7e-07 Score=73.34 Aligned_cols=126 Identities=23% Similarity=0.289 Sum_probs=91.7
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
...++.+++..|.+.. +- ..+..+..++.+++.+|.|. .+...+..+++|++|++++|.|+.. .
T Consensus 71 l~~l~~l~l~~n~i~~-~~-----------~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i--~ 134 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-IL-----------NHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKL--E 134 (414)
T ss_pred hHhHHhhccchhhhhh-hh-----------cccccccceeeeeccccchh--hcccchhhhhcchheeccccccccc--c
Confidence 4556677788888774 22 35888999999999999996 3343367899999999999999865 3
Q ss_pred cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcccc-----ccCCCcccEEEcCCCccCCc
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSC-----IFELVNLTKVSLSSNNLSSN 154 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~-----~~~~~~L~~L~l~~n~~~~~ 154 (179)
.+..++.|+.|++.+|.+.. ...+..+..|+...+.+..... ...+..++.+.+++|.+...
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred chhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 34567779999999999972 2334446666665555433222 35567888899999988763
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.14 E-value=2.1e-06 Score=73.78 Aligned_cols=104 Identities=29% Similarity=0.315 Sum_probs=83.1
Q ss_pred ccccceEEEeeCcc--ccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092 45 FILHSQNLNLCGND--FNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL 122 (179)
Q Consensus 45 ~l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L 122 (179)
.++.+++|-+..|. +. ......|..++.|++||+++|.-...+|..++.+.+|++|+++++.+. .+|..++++..|
T Consensus 543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 34578888888885 43 344555788999999999998765689999999999999999999998 889999999999
Q ss_pred ccccccC-----CccccccCCCcccEEEcCCCc
Q 042092 123 REKKLTC-----SISSCIFELVNLTKVSLSSNN 150 (179)
Q Consensus 123 ~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~ 150 (179)
.++++.. .++.....+++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc
Confidence 9877753 233444558899999887776
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.6e-06 Score=45.13 Aligned_cols=36 Identities=36% Similarity=0.593 Sum_probs=17.5
Q ss_pred CccEEEeccCCCCCCCCccccCCCCccEEEcCCCccC
Q 042092 73 SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 73 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~ 109 (179)
+|++|++++|.++ .+|+.++++++|+++++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555555555555544
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=4.2e-06 Score=59.16 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=42.2
Q ss_pred ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccC
Q 042092 47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~ 109 (179)
.....+|+++|++- .-..|..++.|++|.+++|.|+.+.|..-..+++|+.|.+.+|.+.
T Consensus 42 d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 44567788888773 2234677888888888888888555554445677888888888775
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=9.5e-07 Score=74.04 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=31.6
Q ss_pred cccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCcc
Q 042092 46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108 (179)
Q Consensus 46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l 108 (179)
+|.|++|.+++-.+..+.+...+.++++|..||++++.++.. ..++.+.+||.|.+.+=.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~ 207 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEF 207 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCC
Confidence 455666666665553233334445556666666666655522 3445555555555444333
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=2.1e-07 Score=61.96 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=69.1
Q ss_pred ccceEEEeeCccccCCcccc---cccCCCCccEEEeccCCCCCCCCcccc-CCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092 47 LHSQNLNLCGNDFNYSKISY---GFSQFRSLTILNLRHYNFRGSIPPSFC-NLTQLMHLDLSSNILSGHIPSSLSNLEQL 122 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~l~l~~n~l~~~~~~~~~~l~~L 122 (179)
..+..++++.|.+. .++. -+.+...|+..++++|.+. ..|+.|. ..+.++++++++|.+. .+|..+..++.|
T Consensus 27 kE~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPAL 102 (177)
T ss_pred HHhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHh
Confidence 45667889999774 2332 3455677888899999998 5566654 5678999999999998 567667777666
Q ss_pred ccccccC----CccccccCCCcccEEEcCCCccCC
Q 042092 123 REKKLTC----SISSCIFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 123 ~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~ 153 (179)
+.+++.- ..|+.+..+.++..|+...|....
T Consensus 103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred hhcccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 6655442 234444455566666666665554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=2.9e-06 Score=63.51 Aligned_cols=156 Identities=22% Similarity=0.169 Sum_probs=97.6
Q ss_pred cccCceeeecccccCCCC--CCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 10 RNCAFMNRLLHYSCLSNS--FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
...+++.+||.+|.++.+ +. ..+..+++|+.|+++.|.+. ..+...-....+|+.|-+.+..+...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~-----------~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT~L~w~ 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIG-----------AILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGTGLSWT 136 (418)
T ss_pred HhhhhhhhhcccchhccHHHHH-----------HHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCCCCChh
Confidence 346778899999999852 33 45677899999999999886 22222114667899999988887644
Q ss_pred CC-ccccCCCCccEEEcCCCccC-----CCCCCcCC-------CCccccc-----ccccCC------------------c
Q 042092 88 IP-PSFCNLTQLMHLDLSSNILS-----GHIPSSLS-------NLEQLRE-----KKLTCS------------------I 131 (179)
Q Consensus 88 ~~-~~l~~l~~L~~l~l~~n~l~-----~~~~~~~~-------~l~~L~~-----~~l~~~------------------~ 131 (179)
.. ..+..+|.++.+.++.|.+. ....+.+. ..+.+.. +++... .
T Consensus 137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ 216 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS 216 (418)
T ss_pred hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh
Confidence 33 34567888899988888442 11111110 1111100 111110 1
Q ss_pred cccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 132 SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 132 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
.+....++.+.-|.++.|++-+.-.-+....++.|..|.++.+++.
T Consensus 217 ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 217 EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 1123346677788888888877443344555999999999999875
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=4.8e-06 Score=62.33 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=100.1
Q ss_pred hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092 6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR 85 (179)
Q Consensus 6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (179)
+.|.++++++.|+++.|++...+. .-.....+|+.+-+.+..+.+......+..++.++.|.++.|.+.
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~-----------~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIK-----------SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred HHHhcCccceEeeccCCcCCCccc-----------cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 457889999999999999986554 112467789999999998887667777788999999999888432
Q ss_pred C-----CCCcccc------------------------CCCCccEEEcCCCccCCC-CCCcCCCCcccccccccC------
Q 042092 86 G-----SIPPSFC------------------------NLTQLMHLDLSSNILSGH-IPSSLSNLEQLREKKLTC------ 129 (179)
Q Consensus 86 ~-----~~~~~l~------------------------~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~~~l~~------ 129 (179)
. ...+.+. -+|++..+.+..|.+... .......++.+..+++..
T Consensus 160 q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw 239 (418)
T KOG2982|consen 160 QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW 239 (418)
T ss_pred hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH
Confidence 1 1111111 135666666666655422 122334444444444443
Q ss_pred CccccccCCCcccEEEcCCCccCCchhh-----HhhcCCCCCcEEE
Q 042092 130 SISSCIFELVNLTKVSLSSNNLSSNVEL-----YMFTKLKSLEVLD 170 (179)
Q Consensus 130 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~ 170 (179)
...+.+.++++|+-|.++.+.+.+.... -+.+.+++++.|+
T Consensus 240 asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 240 ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 3445667899999999999998774321 1233477777776
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=3.4e-06 Score=70.76 Aligned_cols=130 Identities=19% Similarity=0.209 Sum_probs=91.4
Q ss_pred ccceEEEeeCccccCCcccccc-cCCCCccEEEeccCCCCCC-CCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092 47 LHSQNLNLCGNDFNYSKISYGF-SQFRSLTILNLRHYNFRGS-IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE 124 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 124 (179)
.+|++|+++|...-...-+..+ ..+|+|+.|.+++..+... ....+..+++|..||++++.++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 6788999988754212222233 4679999999999876522 223456789999999999998733 66778888887
Q ss_pred ccccC------CccccccCCCcccEEEcCCCccCCch--hhH---hhcCCCCCcEEEccCCcccc
Q 042092 125 KKLTC------SISSCIFELVNLTKVSLSSNNLSSNV--ELY---MFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 125 ~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~---~~~~l~~L~~L~l~~n~l~~ 178 (179)
+.+.. .....+..+++|++||+|+....... ... -...+|+|+.||.|+..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 55442 33345678899999999998876522 221 13458899999999887654
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=9.5e-07 Score=73.01 Aligned_cols=124 Identities=30% Similarity=0.273 Sum_probs=92.7
Q ss_pred cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092 48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127 (179)
Q Consensus 48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l 127 (179)
.|...++++|.+. .+..++.-++.++.|++++|+++.. . .+..++.|++||+++|.+. .+|..-..-.+|+.+++
T Consensus 165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 3456678888875 5677778889999999999999844 2 7788999999999999997 66653333334777777
Q ss_pred cCCccccc---cCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092 128 TCSISSCI---FELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176 (179)
Q Consensus 128 ~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 176 (179)
.++...++ .++.+|+.||++.|-+.+.-.......+..|+.|.+.+|++
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77655544 45678899999999888744333334477888899999886
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=5.1e-05 Score=53.82 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=69.3
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC--c
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP--P 90 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~ 90 (179)
....+||++|.+. .++ .+..+++|.+|.+.+|.|+ ...+..-.-++.|+.|.+.+|.+. .+. .
T Consensus 43 ~~d~iDLtdNdl~-~l~------------~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~ 107 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD------------NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLD 107 (233)
T ss_pred ccceecccccchh-hcc------------cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcc
Confidence 4566788888876 333 5777888999999999988 455554455678889999998876 222 2
Q ss_pred cccCCCCccEEEcCCCccCCC---CCCcCCCCccccccccc
Q 042092 91 SFCNLTQLMHLDLSSNILSGH---IPSSLSNLEQLREKKLT 128 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~---~~~~~~~l~~L~~~~l~ 128 (179)
.+..+|.|++|.+-+|.+... ....+..+++|+.+.++
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 355678889998888887522 12345556666665554
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=1.4e-06 Score=64.62 Aligned_cols=94 Identities=18% Similarity=0.084 Sum_probs=76.6
Q ss_pred ccchhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC
Q 042092 3 LVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY 82 (179)
Q Consensus 3 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~ 82 (179)
+....|+.+..+++|+..+|++.+ +. ....|+.|+.|.|+-|+|+ .. ..+..|++|+.|++..|
T Consensus 10 ~~raK~sdl~~vkKLNcwg~~L~D-Is------------ic~kMp~lEVLsLSvNkIs-sL--~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 10 YIRAKCSDLENVKKLNCWGCGLDD-IS------------ICEKMPLLEVLSLSVNKIS-SL--APLQRCTRLKELYLRKN 73 (388)
T ss_pred HHHHHhhHHHHhhhhcccCCCccH-HH------------HHHhcccceeEEeeccccc-cc--hhHHHHHHHHHHHHHhc
Confidence 345678889999999999999984 33 4677999999999999997 33 33789999999999999
Q ss_pred CCCCCCCc--cccCCCCccEEEcCCCccCCCCC
Q 042092 83 NFRGSIPP--SFCNLTQLMHLDLSSNILSGHIP 113 (179)
Q Consensus 83 ~l~~~~~~--~l~~l~~L~~l~l~~n~l~~~~~ 113 (179)
.|.+. .+ .+.++++|+.|++..|.+.+.-+
T Consensus 74 ~I~sl-dEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 74 CIESL-DELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred ccccH-HHHHHHhcCchhhhHhhccCCcccccc
Confidence 98843 33 46789999999999999875433
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.63 E-value=4.2e-05 Score=56.01 Aligned_cols=106 Identities=23% Similarity=0.248 Sum_probs=63.7
Q ss_pred hccccceEEEeeCccccCCcccccccCCCCccEEEeccC--CCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092 44 FFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY--NFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ 121 (179)
Q Consensus 44 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~ 121 (179)
..+..++.+.+.+..++ . -..+..+++|+.|.++.| ++..-.+.....+++|+++++++|++.. +..+..++.
T Consensus 40 d~~~~le~ls~~n~glt-t--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT-T--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred ccccchhhhhhhcccee-e--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 34455666667777664 1 223567888999999998 5554445445566899999999998862 444444443
Q ss_pred cccccccCCccccccCCCcccEEEcCCCccCCc--hhhHhhcCCCCCcEEE
Q 042092 122 LREKKLTCSISSCIFELVNLTKVSLSSNNLSSN--VELYMFTKLKSLEVLD 170 (179)
Q Consensus 122 L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~ 170 (179)
+ ++|..|++..|..+.. .....+.-+++|++||
T Consensus 115 l----------------~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 115 L----------------ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred h----------------cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 3 3455566665554431 1223444455555554
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=4.3e-05 Score=56.01 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=36.4
Q ss_pred hhhhcccCceeeecccc--cCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCC
Q 042092 6 SECARNCAFMNRLLHYS--CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYN 83 (179)
Q Consensus 6 ~~~~~~~~l~~l~l~~n--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~ 83 (179)
..++.++.|+.|.++.| ++.+.++ .....+++|+++++++|++..-..-.....+.+|..|++..|.
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~-----------vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLE-----------VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccce-----------ehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34455566666666666 4444444 3444456666666666665421112223445556666666665
Q ss_pred CC
Q 042092 84 FR 85 (179)
Q Consensus 84 l~ 85 (179)
.+
T Consensus 128 ~~ 129 (260)
T KOG2739|consen 128 VT 129 (260)
T ss_pred cc
Confidence 44
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=1.8e-06 Score=64.55 Aligned_cols=12 Identities=50% Similarity=0.755 Sum_probs=6.8
Q ss_pred CCCccEEEcCCC
Q 042092 95 LTQLMHLDLSSN 106 (179)
Q Consensus 95 l~~L~~l~l~~n 106 (179)
++++..||++++
T Consensus 312 cp~l~~LDLSD~ 323 (419)
T KOG2120|consen 312 CPNLVHLDLSDS 323 (419)
T ss_pred CCceeeeccccc
Confidence 455556665554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.0027 Score=50.30 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=40.3
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC-CCCCCCCc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY-NFRGSIPP 90 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~ 90 (179)
..++.|++++|.++ .+| . + -..|++|.+++|.-- ...|..+ .++|+.|++++| .+. .+|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP-----------~-L--P~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-----------V-L--PNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-----------C-C--CCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-cccc
Confidence 56777888887666 444 2 1 234777777765332 2334322 247777787777 443 3443
Q ss_pred cccCCCCccEEEcCCCcc
Q 042092 91 SFCNLTQLMHLDLSSNIL 108 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l 108 (179)
+|+.|++..+.+
T Consensus 113 ------sLe~L~L~~n~~ 124 (426)
T PRK15386 113 ------SVRSLEIKGSAT 124 (426)
T ss_pred ------ccceEEeCCCCC
Confidence 355566655443
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.20 E-value=0.00055 Score=50.99 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=97.6
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccc-------------ccCCCCc
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYG-------------FSQFRSL 74 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-------------~~~l~~L 74 (179)
.-+.++++..+||.|-+...+| ....+.+++-..|++|.+++|.+. ...... ..+-|.|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~-------e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFP-------EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HhcCCcceeeeccccccCcccc-------hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCc
Confidence 3456889999999998887666 112234556688999999999874 222211 2334778
Q ss_pred cEEEeccCCCCCCCCc-----cccCCCCccEEEcCCCccCCCCCCc--------CCCCcccccccccC---------Ccc
Q 042092 75 TILNLRHYNFRGSIPP-----SFCNLTQLMHLDLSSNILSGHIPSS--------LSNLEQLREKKLTC---------SIS 132 (179)
Q Consensus 75 ~~L~l~~~~l~~~~~~-----~l~~l~~L~~l~l~~n~l~~~~~~~--------~~~l~~L~~~~l~~---------~~~ 132 (179)
+......|++.. .+. .+...-.|+.+-+..|.|. |.. +....+|+.+.++. .+.
T Consensus 160 e~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 160 EVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred eEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 888888887652 221 1222246677777777654 332 22334444444432 123
Q ss_pred ccccCCCcccEEEcCCCccCCchhhHhh-----cCCCCCcEEEccCCcccc
Q 042092 133 SCIFELVNLTKVSLSSNNLSSNVELYMF-----TKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 133 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~ 178 (179)
..+..|+.|++|.+.+|.++......++ ...++|..|..++|-+.|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 3455678899999999988775444332 236678888888876654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.02 E-value=0.0047 Score=40.54 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=22.5
Q ss_pred chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCC
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSS 105 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~ 105 (179)
.+..+..|+.+.+.. .+. ......|..+++|+.+.+..+ +.......|..+.+++.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 344444555555543 222 233344555555555555443 3323333444444555555543
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.74 E-value=0.0054 Score=48.61 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=72.1
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCC-ccCCCCCCcCCCC
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN-ILSGHIPSSLSNL 119 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n-~l~~~~~~~~~~l 119 (179)
..+..+..+++|++++|.++ ..|. --++|+.|.++++.--..+|..+. .+|++|++++| .+. .+|..+..+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe~L 117 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPESVRSL 117 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccccceE
Confidence 34566788999999999886 3452 224699999988543236665542 58999999998 554 566655433
Q ss_pred cccccccc--cCCcccccc-----------------CC-CcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092 120 EQLREKKL--TCSISSCIF-----------------EL-VNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174 (179)
Q Consensus 120 ~~L~~~~l--~~~~~~~~~-----------------~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (179)
. +..+.. -..+|..+. .+ ++|++|++++|.... .|..+ -.+|+.|.++.+
T Consensus 118 ~-L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L---P~SLk~L~ls~n 187 (426)
T PRK15386 118 E-IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL---PESLQSITLHIE 187 (426)
T ss_pred E-eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc---cccCcEEEeccc
Confidence 2 111110 011221111 12 368888888877654 33322 236777777665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00015 Score=54.12 Aligned_cols=84 Identities=20% Similarity=0.123 Sum_probs=65.5
Q ss_pred cchhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccc--cccCCCCccEEEecc
Q 042092 4 VLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISY--GFSQFRSLTILNLRH 81 (179)
Q Consensus 4 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--~~~~l~~L~~L~l~~ 81 (179)
+.+.|..++.|+.|.|+-|.|+..- .+..|++|++|+|..|.|. .+.+ -+.++++|+.|-+..
T Consensus 33 DIsic~kMp~lEVLsLSvNkIssL~-------------pl~rCtrLkElYLRkN~I~--sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 33 DISICEKMPLLEVLSLSVNKISSLA-------------PLQRCTRLKELYLRKNCIE--SLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHHHHhcccceeEEeeccccccch-------------hHHHHHHHHHHHHHhcccc--cHHHHHHHhcCchhhhHhhcc
Confidence 3567899999999999999998543 4899999999999999996 3332 246889999999988
Q ss_pred CCCCCCCCcc-----ccCCCCccEEE
Q 042092 82 YNFRGSIPPS-----FCNLTQLMHLD 102 (179)
Q Consensus 82 ~~l~~~~~~~-----l~~l~~L~~l~ 102 (179)
|.=.+..+.. +..+|+|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 8755454433 34578888886
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.50 E-value=0.0096 Score=39.06 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=51.7
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
.+.....|+.+.+.. .+...-. ..+..+..++.+.+..+ +. ......|.++.+++.+.+.. .+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~-----------~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGE-----------NAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-T-----------TTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred HHhCCCCCCEEEECC-CeeEeCh-----------hhccccccccccccccc-cc-ccceeeeecccccccccccc-cccc
Confidence 345556788888774 3442223 67888889999999886 54 45567788998999999976 4443
Q ss_pred CCCccccCCCCccEEEcCCC
Q 042092 87 SIPPSFCNLTQLMHLDLSSN 106 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n 106 (179)
.....|..+++++.+++..+
T Consensus 72 i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT
T ss_pred cccccccccccccccccCcc
Confidence 45566777899999988665
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0043 Score=27.75 Aligned_cols=18 Identities=61% Similarity=0.730 Sum_probs=8.9
Q ss_pred ccEEEcCCCccCCCCCCcC
Q 042092 98 LMHLDLSSNILSGHIPSSL 116 (179)
Q Consensus 98 L~~l~l~~n~l~~~~~~~~ 116 (179)
|++||+++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444433
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.47 E-value=0.03 Score=23.26 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=7.0
Q ss_pred cccEEEcCCCccCC
Q 042092 140 NLTKVSLSSNNLSS 153 (179)
Q Consensus 140 ~L~~L~l~~n~~~~ 153 (179)
+|++|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 46666666666654
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.28 E-value=0.095 Score=24.15 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=17.0
Q ss_pred CCcccEEEcCCCccCCchhhHhh
Q 042092 138 LVNLTKVSLSSNNLSSNVELYMF 160 (179)
Q Consensus 138 ~~~L~~L~l~~n~~~~~~~~~~~ 160 (179)
+++|+.|++++|.+.. +|...+
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSS-LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHHHc
Confidence 3578999999999998 565544
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.28 E-value=0.095 Score=24.15 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=17.0
Q ss_pred CCcccEEEcCCCccCCchhhHhh
Q 042092 138 LVNLTKVSLSSNNLSSNVELYMF 160 (179)
Q Consensus 138 ~~~L~~L~l~~n~~~~~~~~~~~ 160 (179)
+++|+.|++++|.+.. +|...+
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSS-LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHHHc
Confidence 3578999999999998 565544
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.93 E-value=0.072 Score=24.06 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=10.3
Q ss_pred CcccEEEcCCCccCCchh
Q 042092 139 VNLTKVSLSSNNLSSNVE 156 (179)
Q Consensus 139 ~~L~~L~l~~n~~~~~~~ 156 (179)
++|++|++++|.+.+...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 467777777777765443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.67 E-value=0.083 Score=42.44 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=18.1
Q ss_pred cccceEEEeeCccc-cCCcccccccCCCCccEEEecc
Q 042092 46 ILHSQNLNLCGNDF-NYSKISYGFSQFRSLTILNLRH 81 (179)
Q Consensus 46 l~~L~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~l~~ 81 (179)
++.++.+.+..+.- +..........++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566666665532 2111223344566666666665
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.10 E-value=0.0084 Score=43.91 Aligned_cols=84 Identities=13% Similarity=-0.017 Sum_probs=51.1
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
..+.+.||++.|++... - ..+.-+++++.++++.|.+. ..|..+..+..+..++.-.|.++ ..|.
T Consensus 41 ~kr~tvld~~s~r~vn~-~-----------~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-G-----------KNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred cceeeeehhhhhHHHhh-c-----------cchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 34556666666665522 2 35566666777777777663 45555555555666666666655 5666
Q ss_pred cccCCCCccEEEcCCCccC
Q 042092 91 SFCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~ 109 (179)
+++..+.+++++.-.|.+.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 7777777777766666543
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=0.03 Score=40.02 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=41.0
Q ss_pred cceEEEeeCccccCCcccccccCCCCccEEEeccCCC-CCCCCcccc-CCCCccEEEcCCCc-cCCCCCCcCCCCccccc
Q 042092 48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNF-RGSIPPSFC-NLTQLMHLDLSSNI-LSGHIPSSLSNLEQLRE 124 (179)
Q Consensus 48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~l~-~l~~L~~l~l~~n~-l~~~~~~~~~~l~~L~~ 124 (179)
.++.++-+++.|....+ .-+.++++++.|.+.++.- .+..-+.++ -.++|+.|++++|. |++.-...+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35677777777652222 2355667777777776642 211111222 24678888888664 44333334445555554
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.39 E-value=0.26 Score=23.25 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=14.8
Q ss_pred CcccEEEcCCCccCCchhhHh
Q 042092 139 VNLTKVSLSSNNLSSNVELYM 159 (179)
Q Consensus 139 ~~L~~L~l~~n~~~~~~~~~~ 159 (179)
+.|++|++++|.+.......+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 468889999998876444433
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=0.084 Score=37.81 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=21.4
Q ss_pred CcccEEEcCCC-ccCCchhhHhhcCCCCCcEEEccC
Q 042092 139 VNLTKVSLSSN-NLSSNVELYMFTKLKSLEVLDLSY 173 (179)
Q Consensus 139 ~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~ 173 (179)
++|+.|++++| +|++..-..+.+ +++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence 57888888866 466644344444 77777666554
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.73 E-value=0.74 Score=21.41 Aligned_cols=14 Identities=57% Similarity=0.710 Sum_probs=8.0
Q ss_pred CCCcEEEccCCccc
Q 042092 164 KSLEVLDLSYNKLS 177 (179)
Q Consensus 164 ~~L~~L~l~~n~l~ 177 (179)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666553
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.92 E-value=0.0055 Score=49.74 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=30.2
Q ss_pred chhccccceEEEeeCccccCCcccc---cccCC-CCccEEEeccCCCCCCCC----ccccCCCCccEEEcCCCcc
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISY---GFSQF-RSLTILNLRHYNFRGSIP----PSFCNLTQLMHLDLSSNIL 108 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~---~~~~l-~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~l~l~~n~l 108 (179)
.+..++.|+.|++++|.+.+..... .+... ..+++|++..|.++.... ..+.....++.++++.|.+
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3444555666666666664322111 11111 344555555555543211 2222344555555555554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.36 E-value=0.026 Score=41.47 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=43.3
Q ss_pred chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ 121 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~ 121 (179)
.+....+.+.||++.|.+- .....|+-++.+..++++.|.+. .+|..++.+-.+..+++-.|... +.|..++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3445556666666666653 33444555666666666666655 55655555544555555455444 44555555444
Q ss_pred ccc
Q 042092 122 LRE 124 (179)
Q Consensus 122 L~~ 124 (179)
++.
T Consensus 113 ~k~ 115 (326)
T KOG0473|consen 113 PKK 115 (326)
T ss_pred cch
Confidence 443
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.15 E-value=0.68 Score=37.19 Aligned_cols=65 Identities=22% Similarity=0.092 Sum_probs=35.3
Q ss_pred hccccceEEEeeCcc-ccCCcccccccCCCCccEEEeccCC-CCCCCCcc-ccCCCCccEEEcCCCcc
Q 042092 44 FFILHSQNLNLCGND-FNYSKISYGFSQFRSLTILNLRHYN-FRGSIPPS-FCNLTQLMHLDLSSNIL 108 (179)
Q Consensus 44 ~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~-l~~l~~L~~l~l~~n~l 108 (179)
..+.++++++++.+. +++.........+++|+.|.+..+. +++..-.. ...++.|++++++++..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 345667777777776 5532223322346777777766555 33221111 22456677777776654
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.68 E-value=1.4 Score=20.52 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=6.9
Q ss_pred CccEEEeccCCCC
Q 042092 73 SLTILNLRHYNFR 85 (179)
Q Consensus 73 ~L~~L~l~~~~l~ 85 (179)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.44 E-value=4.5 Score=32.53 Aligned_cols=12 Identities=8% Similarity=-0.100 Sum_probs=6.2
Q ss_pred cCceeeeccccc
Q 042092 12 CAFMNRLLHYSC 23 (179)
Q Consensus 12 ~~l~~l~l~~n~ 23 (179)
++|+.|++++++
T Consensus 216 ~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 216 RKLKYLNLSWCP 227 (483)
T ss_pred hhHHHhhhccCc
Confidence 445555555553
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=56.97 E-value=2.8 Score=33.61 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=18.5
Q ss_pred cccceEEEeeCcccc-CCcccccccCCCCccEEEeccCC
Q 042092 46 ILHSQNLNLCGNDFN-YSKISYGFSQFRSLTILNLRHYN 83 (179)
Q Consensus 46 l~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~~~ 83 (179)
++.|+.+++..+... +......-.+++.|+.+.++++.
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 455666666655432 11122223455666666666553
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.13 E-value=6.6 Score=32.64 Aligned_cols=64 Identities=22% Similarity=0.104 Sum_probs=32.1
Q ss_pred hccccceEEEeeCccccCCc-ccccccCCCCccEEEeccC--CCCCCCCcccc--CCCCccEEEcCCCccC
Q 042092 44 FFILHSQNLNLCGNDFNYSK-ISYGFSQFRSLTILNLRHY--NFRGSIPPSFC--NLTQLMHLDLSSNILS 109 (179)
Q Consensus 44 ~~l~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~~--~l~~~~~~~l~--~l~~L~~l~l~~n~l~ 109 (179)
.+.+.+..+.+++|.+.+-. +.......++|+.|+|++| .+. . ...+. +...|+++.+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccc
Confidence 34456666667777663111 1112234567777777777 322 1 11111 2234666677777664
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.10 E-value=8.4 Score=32.06 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=10.2
Q ss_pred CCCccEEEcCCCccC
Q 042092 95 LTQLMHLDLSSNILS 109 (179)
Q Consensus 95 l~~L~~l~l~~n~l~ 109 (179)
.+.++.+++++|++.
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 466677777777764
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.80 E-value=10 Score=17.15 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=8.3
Q ss_pred CCCcEEEccCCc
Q 042092 164 KSLEVLDLSYNK 175 (179)
Q Consensus 164 ~~L~~L~l~~n~ 175 (179)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777763
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.54 E-value=28 Score=34.88 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=28.3
Q ss_pred EeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 53 NLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 53 ~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
+|++|.|. ...+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccccc
Confidence 57889997 56777888999999999999988754
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.91 E-value=31 Score=34.61 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=26.3
Q ss_pred ecccccCCCCCCcchhhhheecccchhccccceEEEeeCcccc
Q 042092 18 LLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFN 60 (179)
Q Consensus 18 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 60 (179)
||++|.|...-+ ..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~-----------g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEE-----------GICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccCh-----------HHhccCCCceEEEeeCCccc
Confidence 688999984434 67888999999999999884
Done!