Query 042092
Match_columns 179
No_of_seqs 115 out of 1526
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m19_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 141.3 15.3 154 12-178 35-193 (251)
2 3rgz_A Protein brassinosteroid 99.9 1.1E-21 3.8E-26 164.2 12.2 82 96-178 632-718 (768)
3 3rfs_A Internalin B, repeat mo 99.9 1.5E-20 5.1E-25 139.5 15.7 156 8-178 59-219 (272)
4 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-21 6.1E-26 147.4 9.3 79 41-120 95-173 (313)
5 2o6q_A Variable lymphocyte rec 99.9 3.2E-20 1.1E-24 137.6 15.6 155 10-177 59-218 (270)
6 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-20 7.7E-25 139.3 14.8 135 41-177 99-238 (285)
7 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-20 6.1E-25 139.8 14.2 157 9-178 53-215 (285)
8 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-21 9.8E-26 146.2 9.4 152 12-177 50-210 (313)
9 4fcg_A Uncharacterized protein 99.8 1.7E-20 5.9E-25 142.8 13.2 134 41-178 144-291 (328)
10 2o6q_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 136.1 15.2 154 12-178 37-195 (270)
11 3rgz_A Protein brassinosteroid 99.8 2E-20 6.8E-25 156.7 12.8 155 11-178 393-552 (768)
12 4fcg_A Uncharacterized protein 99.8 2.5E-19 8.5E-24 136.4 14.7 153 10-177 148-314 (328)
13 3m19_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 130.2 14.3 152 11-178 13-169 (251)
14 3rfs_A Internalin B, repeat mo 99.8 5.7E-19 1.9E-23 131.0 14.8 154 8-178 37-195 (272)
15 3e6j_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 127.9 14.4 151 12-178 19-173 (229)
16 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.6E-24 129.4 12.0 148 14-177 13-165 (220)
17 1p9a_G Platelet glycoprotein I 99.8 3.5E-19 1.2E-23 133.5 13.4 131 41-176 49-184 (290)
18 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7E-24 129.6 11.6 151 13-178 12-167 (220)
19 2z66_A Variable lymphocyte rec 99.8 1.3E-19 4.6E-24 136.3 11.0 136 41-178 95-237 (306)
20 4ezg_A Putative uncharacterize 99.8 1.8E-19 6.2E-24 127.7 11.0 151 9-178 41-195 (197)
21 1p9a_G Platelet glycoprotein I 99.8 8.1E-19 2.8E-23 131.5 14.7 154 7-177 50-208 (290)
22 3oja_B Anopheles plasmodium-re 99.8 5.5E-19 1.9E-23 144.2 14.6 108 8-127 71-178 (597)
23 2z62_A TOLL-like receptor 4, v 99.8 3E-19 1E-23 132.6 11.7 159 7-178 47-238 (276)
24 3v47_A TOLL-like receptor 5B a 99.8 1.1E-19 3.8E-24 143.4 9.8 130 47-178 275-409 (455)
25 3o6n_A APL1; leucine-rich repe 99.8 8.8E-19 3E-23 136.0 14.7 106 8-125 65-170 (390)
26 2id5_A Lingo-1, leucine rich r 99.8 4.1E-19 1.4E-23 141.1 12.5 154 12-178 32-190 (477)
27 2z62_A TOLL-like receptor 4, v 99.8 3.3E-19 1.1E-23 132.4 11.2 153 12-177 28-190 (276)
28 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 7.9E-24 137.6 10.4 136 41-178 94-236 (353)
29 2o6s_A Variable lymphocyte rec 99.8 4.5E-19 1.6E-23 126.5 10.8 129 48-178 29-162 (208)
30 2z66_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 134.1 10.1 135 42-178 121-262 (306)
31 4eco_A Uncharacterized protein 99.8 1.2E-19 4E-24 149.2 7.4 159 7-178 76-344 (636)
32 3zyi_A Leucine-rich repeat-con 99.8 1.5E-18 5.2E-23 137.2 13.4 86 12-109 75-160 (452)
33 3zyj_A Leucine-rich repeat-con 99.8 1.6E-18 5.3E-23 136.7 13.1 43 134-177 226-268 (440)
34 3v47_A TOLL-like receptor 5B a 99.8 4.1E-19 1.4E-23 140.1 9.3 136 12-158 30-173 (455)
35 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6E-23 136.4 12.9 157 7-177 107-292 (440)
36 2o6s_A Variable lymphocyte rec 99.8 8.4E-18 2.9E-22 119.9 14.8 148 12-179 28-180 (208)
37 1wwl_A Monocyte differentiatio 99.8 6.1E-19 2.1E-23 133.3 9.3 155 10-177 93-266 (312)
38 2xwt_C Thyrotropin receptor; s 99.8 1.4E-18 4.6E-23 126.5 10.2 156 8-178 51-219 (239)
39 2id5_A Lingo-1, leucine rich r 99.8 1.3E-18 4.4E-23 138.2 10.8 157 6-175 50-211 (477)
40 3vq2_A TLR4, TOLL-like recepto 99.8 1.5E-18 5E-23 141.5 11.3 153 12-177 32-194 (606)
41 3zyi_A Leucine-rich repeat-con 99.8 2.4E-18 8E-23 136.1 12.1 156 7-177 118-303 (452)
42 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-18 5.6E-23 141.2 11.2 134 41-176 393-533 (606)
43 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-18 4.8E-23 141.6 10.8 154 12-177 52-214 (635)
44 1ziw_A TOLL-like receptor 3; i 99.8 6.8E-18 2.3E-22 139.3 14.8 155 12-178 25-185 (680)
45 2z80_A TOLL-like receptor 2, v 99.8 9.7E-19 3.3E-23 134.1 8.8 152 12-177 52-211 (353)
46 3t6q_A CD180 antigen; protein- 99.8 5.5E-18 1.9E-22 138.1 13.3 135 41-177 394-536 (606)
47 3t6q_A CD180 antigen; protein- 99.8 3.9E-18 1.3E-22 139.0 12.3 154 12-178 33-193 (606)
48 2z81_A CD282 antigen, TOLL-lik 99.8 2.6E-18 8.8E-23 138.5 11.1 155 12-178 26-210 (549)
49 2z63_A TOLL-like receptor 4, v 99.8 2.2E-18 7.6E-23 139.3 10.6 155 11-178 372-532 (570)
50 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.4E-23 132.5 10.3 82 45-127 62-143 (361)
51 2ell_A Acidic leucine-rich nuc 99.8 7.3E-18 2.5E-22 116.3 11.3 136 11-178 23-161 (168)
52 3o6n_A APL1; leucine-rich repe 99.8 9.5E-18 3.3E-22 130.2 13.1 92 7-110 88-179 (390)
53 2z7x_B TOLL-like receptor 1, v 99.8 4.5E-18 1.5E-22 136.4 11.6 156 9-178 321-482 (520)
54 2z63_A TOLL-like receptor 4, v 99.8 4.4E-18 1.5E-22 137.6 11.3 154 12-178 28-191 (570)
55 2xwt_C Thyrotropin receptor; s 99.8 2.3E-18 7.9E-23 125.3 8.7 151 12-178 31-194 (239)
56 2xot_A Amphoterin-induced prot 99.8 7.1E-18 2.4E-22 129.9 11.7 157 6-178 10-177 (361)
57 1w8a_A SLIT protein; signaling 99.8 8.4E-18 2.9E-22 118.7 10.9 130 13-177 9-139 (192)
58 3oja_B Anopheles plasmodium-re 99.8 1.2E-17 4E-22 136.4 13.1 93 7-111 94-186 (597)
59 4eco_A Uncharacterized protein 99.8 5.1E-19 1.7E-23 145.4 5.1 157 8-178 202-416 (636)
60 2z81_A CD282 antigen, TOLL-lik 99.7 2.3E-18 7.8E-23 138.8 8.7 147 17-178 10-162 (549)
61 1wwl_A Monocyte differentiatio 99.7 2E-18 6.8E-23 130.5 7.8 132 45-178 93-242 (312)
62 2ft3_A Biglycan; proteoglycan, 99.7 2.9E-17 1E-21 124.9 14.0 154 8-178 74-278 (332)
63 1xku_A Decorin; proteoglycan, 99.7 1.7E-17 5.8E-22 126.1 12.4 165 8-178 96-277 (330)
64 3j0a_A TOLL-like receptor 5; m 99.7 5.6E-18 1.9E-22 143.2 10.6 156 11-178 23-188 (844)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.5E-17 5.1E-22 134.8 12.2 156 9-178 350-511 (562)
66 1xku_A Decorin; proteoglycan, 99.7 2.7E-17 9.2E-22 125.0 12.6 44 133-177 210-253 (330)
67 1h6u_A Internalin H; cell adhe 99.7 6.5E-17 2.2E-21 122.0 14.4 146 9-177 60-208 (308)
68 2v9t_B SLIT homolog 2 protein 99.7 2.9E-17 9.9E-22 118.3 11.8 130 12-153 32-166 (220)
69 1ziw_A TOLL-like receptor 3; i 99.7 3.3E-17 1.1E-21 135.2 13.7 142 6-159 43-191 (680)
70 3e6j_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 117.7 13.0 131 12-155 40-175 (229)
71 2ft3_A Biglycan; proteoglycan, 99.7 5.6E-17 1.9E-21 123.4 13.5 99 12-125 54-152 (332)
72 3oja_A Leucine-rich immune mol 99.7 6.3E-18 2.2E-22 135.0 8.6 148 11-177 33-182 (487)
73 4ecn_A Leucine-rich repeat pro 99.7 2.4E-18 8.2E-23 145.4 6.4 112 64-177 440-586 (876)
74 2wfh_A SLIT homolog 2 protein 99.7 7.1E-17 2.4E-21 114.1 12.5 128 14-177 12-139 (193)
75 4g8a_A TOLL-like receptor 4; l 99.7 2.5E-17 8.6E-22 134.2 11.5 131 47-178 52-187 (635)
76 2v70_A SLIT-2, SLIT homolog 2 99.7 6.7E-17 2.3E-21 116.4 12.2 134 12-156 32-170 (220)
77 1h6t_A Internalin B; cell adhe 99.7 1.1E-16 3.6E-21 120.0 13.7 125 43-177 86-213 (291)
78 4glp_A Monocyte differentiatio 99.7 1.9E-17 6.6E-22 124.9 9.7 155 11-177 90-264 (310)
79 4glp_A Monocyte differentiatio 99.7 5.8E-18 2E-22 127.8 6.7 152 11-179 144-309 (310)
80 1h6t_A Internalin B; cell adhe 99.7 1.2E-16 4E-21 119.7 13.5 147 9-178 43-192 (291)
81 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 4.7E-21 110.9 13.0 131 13-178 8-138 (177)
82 1h6u_A Internalin H; cell adhe 99.7 1.3E-16 4.4E-21 120.4 13.5 148 8-178 81-231 (308)
83 4ecn_A Leucine-rich repeat pro 99.7 6.6E-18 2.3E-22 142.7 7.1 153 8-176 444-631 (876)
84 2je0_A Acidic leucine-rich nuc 99.7 2.6E-17 8.9E-22 111.4 8.7 131 11-173 16-149 (149)
85 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-17 4.5E-22 126.2 7.5 81 10-109 32-112 (317)
86 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.3E-21 117.1 12.7 147 8-178 37-186 (263)
87 3oja_A Leucine-rich immune mol 99.7 3.9E-17 1.3E-21 130.4 9.3 155 7-177 53-227 (487)
88 2z7x_B TOLL-like receptor 1, v 99.7 7.4E-17 2.5E-21 129.3 9.8 130 44-178 321-458 (520)
89 4fmz_A Internalin; leucine ric 99.7 4.1E-16 1.4E-20 119.0 13.0 158 8-177 173-346 (347)
90 4fmz_A Internalin; leucine ric 99.7 1E-15 3.5E-20 116.8 15.2 152 8-178 151-325 (347)
91 3j0a_A TOLL-like receptor 5; m 99.7 2.8E-16 9.4E-21 132.9 13.0 155 12-178 266-440 (844)
92 1m9s_A Internalin B; cell inva 99.7 5.7E-16 2E-20 126.6 14.3 147 8-178 61-211 (605)
93 3o53_A Protein LRIM1, AGAP0063 99.7 9.5E-17 3.3E-21 121.5 8.6 127 46-177 119-250 (317)
94 1m9s_A Internalin B; cell inva 99.7 6.1E-16 2.1E-20 126.4 13.7 148 8-178 39-189 (605)
95 1a9n_A U2A', U2A'; complex (nu 99.7 1.2E-16 4.1E-21 111.1 7.7 135 8-177 15-153 (176)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.4E-16 1.5E-20 126.1 12.0 147 8-176 27-181 (562)
97 1o6v_A Internalin A; bacterial 99.7 9.5E-16 3.2E-20 121.6 13.5 126 43-178 261-389 (466)
98 2ca6_A RAN GTPase-activating p 99.6 2.5E-17 8.5E-22 127.7 2.2 132 47-178 159-317 (386)
99 1xeu_A Internalin C; cellular 99.6 6.9E-16 2.4E-20 114.0 9.8 144 11-178 18-164 (263)
100 4ezg_A Putative uncharacterize 99.6 2.3E-15 8E-20 106.4 10.2 129 42-178 39-173 (197)
101 1o6v_A Internalin A; bacterial 99.6 9.9E-15 3.4E-19 115.8 14.8 41 135-178 327-367 (466)
102 2ast_B S-phase kinase-associat 99.6 3.6E-17 1.2E-21 124.3 0.0 150 12-174 93-257 (336)
103 1w8a_A SLIT protein; signaling 99.6 5.6E-15 1.9E-19 104.2 11.2 112 12-154 29-141 (192)
104 2ast_B S-phase kinase-associat 99.6 4.6E-17 1.6E-21 123.7 0.2 128 11-149 117-257 (336)
105 4ay9_X Follicle-stimulating ho 99.6 2.5E-15 8.5E-20 115.2 9.5 155 12-178 30-216 (350)
106 3cvr_A Invasion plasmid antige 99.6 1.4E-14 4.7E-19 117.6 13.1 134 12-178 100-244 (571)
107 3bz5_A Internalin-J, INLJ; leu 99.6 2.4E-14 8.3E-19 113.5 14.0 143 9-178 39-205 (457)
108 2ca6_A RAN GTPase-activating p 99.6 1.7E-16 5.9E-21 123.0 1.5 84 94-177 185-287 (386)
109 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 101.9 11.6 110 12-153 31-140 (193)
110 4b8c_D Glucose-repressible alc 99.6 3.4E-16 1.2E-20 130.4 3.3 115 41-159 218-336 (727)
111 3bz5_A Internalin-J, INLJ; leu 99.6 3.7E-14 1.3E-18 112.4 14.7 145 7-178 59-226 (457)
112 2o6r_A Variable lymphocyte rec 99.6 2.8E-14 9.5E-19 99.1 12.0 114 12-156 28-141 (177)
113 2je0_A Acidic leucine-rich nuc 99.6 1.1E-14 3.6E-19 98.4 9.1 113 45-178 15-127 (149)
114 1dce_A Protein (RAB geranylger 99.6 1.1E-16 3.6E-21 130.1 -1.7 101 73-178 442-547 (567)
115 3goz_A Leucine-rich repeat-con 99.6 8.7E-16 3E-20 118.2 2.2 39 140-178 197-239 (362)
116 2ell_A Acidic leucine-rich nuc 99.5 2.7E-14 9.2E-19 98.3 9.0 112 46-178 23-134 (168)
117 4b8c_D Glucose-repressible alc 99.5 9.5E-15 3.3E-19 121.7 7.5 149 12-178 173-330 (727)
118 1dce_A Protein (RAB geranylger 99.5 4.4E-14 1.5E-18 114.7 11.1 117 49-171 443-567 (567)
119 3g39_A Variable lymphocyte rec 99.5 9.3E-14 3.2E-18 96.1 11.0 109 12-154 9-117 (170)
120 1ds9_A Outer arm dynein; leuci 99.5 2.7E-16 9.4E-21 111.3 -2.0 158 8-178 14-186 (198)
121 3g39_A Variable lymphocyte rec 99.5 9.9E-14 3.4E-18 95.9 10.8 107 48-178 10-116 (170)
122 2r9u_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 94.9 11.0 107 13-153 13-119 (174)
123 1jl5_A Outer protein YOPM; leu 99.5 4.3E-13 1.5E-17 106.2 14.0 119 47-177 131-250 (454)
124 1jl5_A Outer protein YOPM; leu 99.5 3.5E-13 1.2E-17 106.7 13.4 117 12-153 131-251 (454)
125 2r9u_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 93.8 11.1 106 49-178 14-119 (174)
126 3goz_A Leucine-rich repeat-con 99.5 1E-14 3.6E-19 112.2 3.8 160 11-178 21-210 (362)
127 3cvr_A Invasion plasmid antige 99.5 4.4E-13 1.5E-17 108.8 13.1 134 12-177 59-193 (571)
128 3g06_A SSPH2 (leucine-rich rep 99.5 1.3E-12 4.4E-17 107.1 14.5 77 96-178 221-298 (622)
129 1a9n_A U2A', U2A'; complex (nu 99.4 6.1E-13 2.1E-17 92.3 9.4 112 42-178 14-127 (176)
130 3g06_A SSPH2 (leucine-rich rep 99.4 3.1E-12 1.1E-16 104.9 14.4 16 13-29 41-56 (622)
131 4ay9_X Follicle-stimulating ho 99.4 2.5E-13 8.4E-18 104.1 7.4 162 6-173 48-232 (350)
132 1z7x_W Ribonuclease inhibitor; 99.4 2.9E-15 9.9E-20 118.2 -4.0 90 9-109 25-126 (461)
133 1ds9_A Outer arm dynein; leuci 99.4 6.7E-15 2.3E-19 104.1 -2.1 128 7-153 43-186 (198)
134 1z7x_W Ribonuclease inhibitor; 99.4 3.6E-15 1.2E-19 117.7 -4.2 156 11-178 198-412 (461)
135 3un9_A NLR family member X1; l 99.4 5.6E-15 1.9E-19 114.3 -3.7 157 11-178 71-253 (372)
136 2ifg_A High affinity nerve gro 99.3 3.2E-12 1.1E-16 97.6 7.5 105 15-153 11-117 (347)
137 2ifg_A High affinity nerve gro 99.3 6.9E-12 2.4E-16 95.7 8.2 104 50-177 11-116 (347)
138 3sb4_A Hypothetical leucine ri 99.3 1.1E-11 3.7E-16 94.1 8.1 81 95-177 225-310 (329)
139 3sb4_A Hypothetical leucine ri 99.2 3.9E-11 1.3E-15 91.0 10.0 99 71-171 225-328 (329)
140 3ogk_B Coronatine-insensitive 99.2 5E-12 1.7E-16 102.6 3.6 57 116-172 266-326 (592)
141 2p1m_B Transport inhibitor res 99.1 1E-11 3.5E-16 100.7 1.9 87 10-107 103-195 (594)
142 3ogk_B Coronatine-insensitive 99.0 3.2E-10 1.1E-14 92.0 6.3 86 93-178 290-392 (592)
143 3un9_A NLR family member X1; l 99.0 1.8E-11 6.3E-16 94.5 -2.0 152 12-176 101-282 (372)
144 2p1m_B Transport inhibitor res 98.9 8.8E-11 3E-15 95.2 -1.5 84 93-177 429-519 (594)
145 4fdw_A Leucine rich hypothetic 98.7 3.4E-08 1.2E-12 76.9 8.8 101 72-176 248-357 (401)
146 2ra8_A Uncharacterized protein 98.7 3.1E-08 1.1E-12 76.2 6.3 163 9-178 136-321 (362)
147 1io0_A Tropomodulin; LRR prote 98.7 1.6E-09 5.5E-14 75.7 -1.0 121 42-177 31-164 (185)
148 3rw6_A Nuclear RNA export fact 98.6 7.4E-09 2.5E-13 76.3 -0.1 68 44-113 167-237 (267)
149 1io0_A Tropomodulin; LRR prote 98.6 2.9E-09 1E-13 74.3 -2.2 123 9-153 33-165 (185)
150 4fdw_A Leucine rich hypothetic 98.5 7.1E-07 2.4E-11 69.5 9.7 129 42-176 244-382 (401)
151 2ra8_A Uncharacterized protein 98.4 2.3E-07 7.7E-12 71.4 5.6 161 11-178 106-293 (362)
152 3rw6_A Nuclear RNA export fact 98.4 2.1E-07 7.3E-12 68.5 4.1 82 9-102 167-257 (267)
153 3e4g_A ATP synthase subunit S, 98.3 9.7E-08 3.3E-12 65.9 0.9 34 73-106 115-149 (176)
154 3e4g_A ATP synthase subunit S, 98.1 7.1E-07 2.4E-11 61.6 2.1 103 46-168 60-171 (176)
155 4gt6_A Cell surface protein; l 97.6 0.00024 8.1E-09 54.9 7.8 127 41-175 259-389 (394)
156 4fs7_A Uncharacterized protein 97.5 0.0008 2.7E-08 51.9 10.3 125 42-174 248-376 (394)
157 4gt6_A Cell surface protein; l 97.4 0.00044 1.5E-08 53.4 7.5 107 41-151 282-390 (394)
158 4fs7_A Uncharacterized protein 97.3 0.0017 5.9E-08 50.0 9.4 120 41-169 270-393 (394)
159 4h09_A Hypothetical leucine ri 97.3 0.0014 4.8E-08 50.1 8.6 106 41-149 234-343 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.1 4.2E-05 1.4E-09 53.7 -1.0 117 45-176 39-169 (197)
161 3rfe_A Platelet glycoprotein I 97.1 0.0014 4.7E-08 42.8 6.2 37 140-177 32-68 (130)
162 4h09_A Hypothetical leucine ri 97.0 0.0034 1.2E-07 47.9 8.6 86 41-129 257-342 (379)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0002 6.9E-09 50.2 0.8 92 9-107 38-137 (197)
164 3rfe_A Platelet glycoprotein I 96.9 0.0024 8.4E-08 41.5 6.0 36 73-108 32-67 (130)
165 2lz0_A Uncharacterized protein 69.8 9 0.00031 23.2 4.5 40 41-82 14-53 (100)
166 2lz0_A Uncharacterized protein 69.1 13 0.00043 22.5 5.1 48 58-107 7-54 (100)
No 1
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.5e-21 Score=141.33 Aligned_cols=154 Identities=25% Similarity=0.216 Sum_probs=129.4
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+.+..+ ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..
T Consensus 35 ~~l~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSD-----------ATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp TTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCCEEEccCCCcCccCH-----------hHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhH
Confidence 467888999998887666 67899999999999999998 566777899999999999999999777778
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 166 (179)
|..+++|++|++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 181 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKL 181 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCC
Confidence 89999999999999999866666678888888865553 344467888999999999999998 444445559999
Q ss_pred cEEEccCCcccc
Q 042092 167 EVLDLSYNKLSL 178 (179)
Q Consensus 167 ~~L~l~~n~l~~ 178 (179)
+.|++++|++++
T Consensus 182 ~~L~l~~N~~~c 193 (251)
T 3m19_A 182 QTITLFGNQFDC 193 (251)
T ss_dssp CEEECCSCCBCT
T ss_pred CEEEeeCCceeC
Confidence 999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.1e-21 Score=164.23 Aligned_cols=82 Identities=35% Similarity=0.438 Sum_probs=50.5
Q ss_pred CCccEEEcCCCccCCCCCCcCCCCccccc-----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEE
Q 042092 96 TQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD 170 (179)
Q Consensus 96 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~-----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 170 (179)
++|+++++++|.+.+.+|..++.++.|+. +.+++.+|..++.+++|++|++++|++++.+|..+.. +++|++|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~ 710 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA-LTMLTEID 710 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG-CCCCSEEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEE
Confidence 44555666666665556666665555554 3344556666666666666666666666656655444 66677777
Q ss_pred ccCCcccc
Q 042092 171 LSYNKLSL 178 (179)
Q Consensus 171 l~~n~l~~ 178 (179)
+++|+++|
T Consensus 711 ls~N~l~g 718 (768)
T 3rgz_A 711 LSNNNLSG 718 (768)
T ss_dssp CCSSEEEE
T ss_pred CcCCcccc
Confidence 77776665
No 3
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.5e-20 Score=139.55 Aligned_cols=156 Identities=23% Similarity=0.186 Sum_probs=122.9
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
....++|+.|++++|.+.+ ++ .+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++.
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~~------------~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-IS------------ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-CG------------GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred cccCCCCcEEECCCCCCCC-ch------------hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCcc
Confidence 4456778888888888774 33 6788889999999999987 45666678899999999999999877
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
.+..+..+++|++|++++|.+.+..+..+..+++|+.+.+. +..+..+..+++|++|++++|.+.+..+ ..+..
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~ 203 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDR 203 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTT
T ss_pred CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhC
Confidence 67778889999999999999886666667888888875554 3344456778899999999999998444 44455
Q ss_pred CCCCcEEEccCCcccc
Q 042092 163 LKSLEVLDLSYNKLSL 178 (179)
Q Consensus 163 l~~L~~L~l~~n~l~~ 178 (179)
+++|+.|++++|++++
T Consensus 204 l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 204 LTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CcCCCEEEccCCCccc
Confidence 9999999999998875
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.8e-21 Score=147.36 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=37.1
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..++
T Consensus 95 ~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 95 PAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp GGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred hhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 34444444444444444443 23344444444555555555544444444444445555555555544444444444443
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=3.2e-20 Score=137.63 Aligned_cols=155 Identities=23% Similarity=0.209 Sum_probs=91.5
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
..++|+.|++++|.++...+ ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPA-----------GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCT-----------TTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCCCEEECCCCccCeeCh-----------hhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCH
Confidence 34455555555555542222 33455666666666666665 3344445666666666666666665555
Q ss_pred ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092 90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164 (179)
Q Consensus 90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 164 (179)
..|..+++|++|++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.+ ++...+..++
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 205 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLE 205 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCT
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhcccc
Confidence 5566666677777777666644444466666666644433 223345666777777777777776 4443344477
Q ss_pred CCcEEEccCCccc
Q 042092 165 SLEVLDLSYNKLS 177 (179)
Q Consensus 165 ~L~~L~l~~n~l~ 177 (179)
+|+.|++++|+++
T Consensus 206 ~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 206 KLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEecCCCee
Confidence 7777777777764
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.2e-20 Score=139.28 Aligned_cols=135 Identities=21% Similarity=0.195 Sum_probs=73.5
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 34444555555555555554 23344445555555555555555544444455555555555555555533333455555
Q ss_pred ccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 121 QLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 121 ~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+|+.+.+.+ ..+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|+++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 555533332 334556666677777777777776 33333344777777777777765
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.8e-20 Score=139.82 Aligned_cols=157 Identities=21% Similarity=0.156 Sum_probs=106.9
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCcc-ccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGND-FNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
...++|+.|++++|.+++..+ ..+..+++|++|++++|. +. ...+..+..+++|++|++++|.+++.
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDA-----------AAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred ccCCCCCEEECCCCccceeCH-----------hhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEE
Confidence 344566666666666654444 566777777777777776 54 34456677777777777777777766
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
.+..+..+++|+++++++|.+....+..+..+++|+.+.+.+. .+..+..+++|++|++++|.+.+..+..+..
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 199 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD- 199 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-
T ss_pred CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC-
Confidence 6666777777778887777777555555777777777555532 2334666778888888888887754554444
Q ss_pred CCCCcEEEccCCcccc
Q 042092 163 LKSLEVLDLSYNKLSL 178 (179)
Q Consensus 163 l~~L~~L~l~~n~l~~ 178 (179)
+++|+.|++++|.+++
T Consensus 200 l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSA 215 (285)
T ss_dssp CTTCCEEECCSSCCSC
T ss_pred cccccEeeCCCCcCCc
Confidence 8888888888887765
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.9e-21 Score=146.22 Aligned_cols=152 Identities=28% Similarity=0.353 Sum_probs=127.1
Q ss_pred cCceeeecccccCCC--CCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092 12 CAFMNRLLHYSCLSN--SFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYNFRGSI 88 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 88 (179)
.+++.|++++|.+.+ .+| ..+..+++|++|++++ |.+. ...+..+..+++|++|++++|.+++..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-----------~~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-----------SSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-----------GGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccC-----------hhHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 689999999999998 788 8999999999999995 8887 467888999999999999999999888
Q ss_pred CccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCC-cccEEEcCCCccCCchhhHhhcC
Q 042092 89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELV-NLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
|..+..+++|++|++++|.+.+.+|..+..+++|+.+.+. +.+|..+..++ .|++|++++|.+.+.+|..+..
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~- 196 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN- 196 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-
Confidence 9999999999999999999998899999999999885554 45677777776 7888888888887655554443
Q ss_pred CCCCcEEEccCCccc
Q 042092 163 LKSLEVLDLSYNKLS 177 (179)
Q Consensus 163 l~~L~~L~l~~n~l~ 177 (179)
+. |+.|++++|.++
T Consensus 197 l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLE 210 (313)
T ss_dssp CC-CSEEECCSSEEE
T ss_pred Cc-ccEEECcCCccc
Confidence 44 666666666554
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.7e-20 Score=142.82 Aligned_cols=134 Identities=21% Similarity=0.206 Sum_probs=78.3
Q ss_pred cchhccccceEEEeeCccccCCccccccc---------CCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCC
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFS---------QFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH 111 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---------~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~ 111 (179)
..+..+++|++|++++|.+. ...+..+. ++++|++|++++|.++ .+|..+..+++|++|++++|.+. .
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~ 220 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred HHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence 44555555555555555443 22333222 2555555555555555 45555666666666666666666 3
Q ss_pred CCCcCCCCcccccccc-----cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 112 IPSSLSNLEQLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 112 ~~~~~~~l~~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+|..+..+++|+.+.+ .+.+|..+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|++.|
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCC
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchh
Confidence 4555666666655333 3345666666777777777777766666655444 7777777777776654
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=5.9e-20 Score=136.14 Aligned_cols=154 Identities=22% Similarity=0.213 Sum_probs=124.6
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..|..+++|++|++++|.++...+..
T Consensus 37 ~~l~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 104 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS-----------KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGV 104 (270)
T ss_dssp TTCSEEECCSSCCSCCCT-----------TSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEECcCCCCCeeCH-----------HHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhH
Confidence 357777787777775444 57888999999999999997 455666788999999999999999776677
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 166 (179)
+..+++|++|++++|.+.+..+..+..+++|+.+.+.+. .+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 183 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTEL 183 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCc
Confidence 888999999999999998777777888898888666542 33446788999999999999998 444445559999
Q ss_pred cEEEccCCcccc
Q 042092 167 EVLDLSYNKLSL 178 (179)
Q Consensus 167 ~~L~l~~n~l~~ 178 (179)
++|++++|.+++
T Consensus 184 ~~L~L~~N~l~~ 195 (270)
T 2o6q_A 184 KTLKLDNNQLKR 195 (270)
T ss_dssp CEEECCSSCCSC
T ss_pred CEEECCCCcCCc
Confidence 999999998864
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=2e-20 Score=156.69 Aligned_cols=155 Identities=28% Similarity=0.289 Sum_probs=134.2
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
.+.|+.|++++|.+++.+| ..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+..|.
T Consensus 393 ~~~L~~L~L~~n~l~~~~p-----------~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIP-----------PTLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp TCCCCEEECCSSEEEEECC-----------GGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cCCccEEECCCCccccccC-----------HHHhcCCCCCEEECcCCccc-CcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence 3456666666666666666 78899999999999999998 46788899999999999999999989999
Q ss_pred cccCCCCccEEEcCCCccCCCCCCcCCCCccccccc-----ccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK-----LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~-----l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
.+..+++|+++++++|.+.+.+|..+..+++|+.+. +.+..|..++.+++|++|++++|.+.+.+|..+.. +++
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~ 539 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRS 539 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTT
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCC
Confidence 999999999999999999988999999999888744 45678888999999999999999999878877666 999
Q ss_pred CcEEEccCCcccc
Q 042092 166 LEVLDLSYNKLSL 178 (179)
Q Consensus 166 L~~L~l~~n~l~~ 178 (179)
|+.|++++|+++|
T Consensus 540 L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 540 LIWLDLNTNLFNG 552 (768)
T ss_dssp CCEEECCSSEEES
T ss_pred CCEEECCCCccCC
Confidence 9999999999886
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=2.5e-19 Score=136.43 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=127.2
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccchh---------ccccceEEEeeCccccCCcccccccCCCCccEEEec
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF---------FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLR 80 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~---------~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~ 80 (179)
.+++|+.|++++|.+.+.+| ..+. .+++|++|++++|.++ ..+..+..+++|++|+++
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p-----------~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELP-----------EPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCC-----------SCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEE
T ss_pred cCcCCCEEECCCCCCccccC-----------hhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEcc
Confidence 34455555555555544444 4444 4999999999999997 567779999999999999
Q ss_pred cCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc-----cCCccccccCCCcccEEEcCCCccCCch
Q 042092 81 HYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNV 155 (179)
Q Consensus 81 ~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 155 (179)
+|.++ ..|+.+..+++|++|++++|.+.+.+|..+..+++|+.+.+ .+.+|..+..+++|++|++++|.+.+.+
T Consensus 215 ~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 99999 56778999999999999999998899999999999988555 4567888999999999999999999989
Q ss_pred hhHhhcCCCCCcEEEccCCccc
Q 042092 156 ELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
|..+.. +++++.+++..+.+.
T Consensus 294 P~~l~~-L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQ-LPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGG-SCTTCEEECCGGGSC
T ss_pred cHHHhh-ccCceEEeCCHHHHH
Confidence 988777 999999999887664
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=4.2e-19 Score=130.23 Aligned_cols=152 Identities=26% Similarity=0.267 Sum_probs=127.1
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
....+.++++++.++ .+| ..+. +.++.|++++|.++ ...+..+.++++|++|++++|.+++..+.
T Consensus 13 ~~~~~~l~~~~~~l~-~~p-----------~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 13 NEGKKEVDCQGKSLD-SVP-----------SGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp EGGGTEEECTTCCCS-SCC-----------SCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCeEEecCCCCcc-ccC-----------CCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 356788999999998 666 4443 68999999999998 56677799999999999999999988888
Q ss_pred cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
.+..+++|++|++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.+ ++...+..+++
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 156 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTN 156 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcC
Confidence 899999999999999999977677888899998866654 334456788999999999999998 54444455999
Q ss_pred CcEEEccCCcccc
Q 042092 166 LEVLDLSYNKLSL 178 (179)
Q Consensus 166 L~~L~l~~n~l~~ 178 (179)
|++|++++|.+++
T Consensus 157 L~~L~L~~N~l~~ 169 (251)
T 3m19_A 157 LQTLSLSTNQLQS 169 (251)
T ss_dssp CCEEECCSSCCSC
T ss_pred CCEEECCCCcCCc
Confidence 9999999999875
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=5.7e-19 Score=131.03 Aligned_cols=154 Identities=25% Similarity=0.249 Sum_probs=129.4
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
....++|+.+++++|.+. .++ .+..+++|++|++++|.+++ . ..+..+++|++|++++|.+++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~------------~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ------------GIQYLPNVRYLALGGNKLHD--I-SALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECTTSCCCCC
T ss_pred cccccceeeeeeCCCCcc-ccc------------ccccCCCCcEEECCCCCCCC--c-hhhcCCCCCCEEECCCCccCcc
Confidence 345688999999999987 444 58889999999999999973 3 3688999999999999999977
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
.+..+..+++|++|++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+++ ++...+..
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~ 179 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDK 179 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcC
Confidence 777789999999999999999977677788899998866553 344456788999999999999998 54444555
Q ss_pred CCCCcEEEccCCcccc
Q 042092 163 LKSLEVLDLSYNKLSL 178 (179)
Q Consensus 163 l~~L~~L~l~~n~l~~ 178 (179)
+++|++|++++|.+++
T Consensus 180 l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTCCEEECCSSCCSC
T ss_pred CccCCEEECCCCcCCc
Confidence 9999999999999876
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=6.1e-19 Score=127.87 Aligned_cols=151 Identities=26% Similarity=0.243 Sum_probs=111.9
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
|.-+.++.+++.++ .+| ..+ .+++++|++++|.++ ...+..+..+++|+.|++++|.++...+..
T Consensus 19 Cs~~~v~c~~~~l~-~ip-----------~~~--~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 19 CSGTTVDCRSKRHA-SVP-----------AGI--PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp EETTEEECTTSCCS-SCC-----------SCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred EeCCEeEccCCCcC-ccC-----------CCC--CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence 34556777777776 555 333 377888888888887 455667778888888888888887555566
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 167 (179)
|..+++|++|++++|.+.+..+..+..+++|+.+.+.+ .+|..+..+++|++|++++|.+.+ ++...+..+++|+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT 162 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC
Confidence 77788888888888888755556677777777755553 456667778899999999999987 4444455589999
Q ss_pred EEEccCCcccc
Q 042092 168 VLDLSYNKLSL 178 (179)
Q Consensus 168 ~L~l~~n~l~~ 178 (179)
.|++++|++++
T Consensus 163 ~L~l~~N~~~c 173 (229)
T 3e6j_A 163 HAYLFGNPWDC 173 (229)
T ss_dssp EEECTTSCBCT
T ss_pred EEEeeCCCccC
Confidence 99999998864
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.2e-19 Score=129.45 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=118.9
Q ss_pred ceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc
Q 042092 14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC 93 (179)
Q Consensus 14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 93 (179)
-+.++.+++.++ .+| ..+. +.+++|++++|.++ ...+..|..+++|+.|++++|.++...|..|.
T Consensus 13 ~~~v~c~~~~l~-~iP-----------~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIP-----------TNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77 (220)
T ss_dssp TTEEECTTSCCS-SCC-----------SSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCEEEcCCCCcC-cCC-----------CccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence 367888888887 566 4342 67899999999987 45566788899999999999999877788899
Q ss_pred CCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcE
Q 042092 94 NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV 168 (179)
Q Consensus 94 ~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 168 (179)
.+++|++|++++|.+....+..+..+++|+.+.+. +..+..+..+++|++|++++|.+.+ ++...+..+++|+.
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQT 156 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCE
Confidence 99999999999999985555567788888875554 4456678888999999999999998 44444555999999
Q ss_pred EEccCCccc
Q 042092 169 LDLSYNKLS 177 (179)
Q Consensus 169 L~l~~n~l~ 177 (179)
|++++|+++
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 999999875
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=3.5e-19 Score=133.45 Aligned_cols=131 Identities=27% Similarity=0.286 Sum_probs=63.2
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+++|++|++++|.++ . .+. ...+++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..++
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~-~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELT-K-LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCC-E-EEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred HHhhcCCCCCEEECCCCccC-c-ccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC
Confidence 44555566666666666554 1 221 144555555555555555 4444445555555555555555533334455555
Q ss_pred ccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092 121 QLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176 (179)
Q Consensus 121 ~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 176 (179)
+|+.+.+.+ ..+..+..+++|+.|++++|.+++ ++...+..+++|+.|++++|.+
T Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcC
Confidence 555433322 122233444555555555555554 3333333355555555555544
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=129.64 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=120.7
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF 92 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l 92 (179)
.-+.+++++|.++ .+| ..+ ...+++|++++|.+++......|..+++|+.|++++|.+++..+..|
T Consensus 12 ~~~~l~~s~n~l~-~iP-----------~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 77 (220)
T 2v70_A 12 EGTTVDCSNQKLN-KIP-----------EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77 (220)
T ss_dssp ETTEEECCSSCCS-SCC-----------SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCEeEeCCCCcc-cCc-----------cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh
Confidence 3468999999988 566 444 34568999999999732133557899999999999999997777789
Q ss_pred cCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092 93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 167 (179)
..+++|++|++++|.+.+..+..+..+++|+.+.+. +..+..+..+++|++|++++|.+++..|..+. .+++|+
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~ 156 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLS 156 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCC
T ss_pred CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCC
Confidence 999999999999999987767778888888875554 44567788899999999999999995565544 499999
Q ss_pred EEEccCCcccc
Q 042092 168 VLDLSYNKLSL 178 (179)
Q Consensus 168 ~L~l~~n~l~~ 178 (179)
.|++++|++++
T Consensus 157 ~L~L~~N~l~c 167 (220)
T 2v70_A 157 TLNLLANPFNC 167 (220)
T ss_dssp EEECCSCCEEC
T ss_pred EEEecCcCCcC
Confidence 99999999864
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.3e-19 Score=136.27 Aligned_cols=136 Identities=22% Similarity=0.291 Sum_probs=73.9
Q ss_pred cchhccccceEEEeeCccccCCccc-ccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCC-CCCCcCCC
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKIS-YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG-HIPSSLSN 118 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~-~~~~~~~~ 118 (179)
..+..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp EEEETCTTCCEEECTTSEEES-STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhcCCCCCCCEEECCCCcccc-cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 345556666666666666652 222 345566666666666666655555555566666666666666553 34555555
Q ss_pred CcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 119 LEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 119 l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+++|+.+.+.+ ..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|++++
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCB
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcc
Confidence 55555544332 22344455555666666666655522222 2335555555555555543
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.8e-19 Score=127.68 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=124.6
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI 88 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 88 (179)
...++|+.|++++|.++ .++ .+..+++|++|++++|.++ .. ..+..+++|++|++++|.+++..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~l~~n~~~--~~-~~l~~l~~L~~L~l~~n~l~~~~ 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT------------GIEYAHNIKDLTINNIHAT--NY-NPISGLSNLERLRIMGKDVTSDK 104 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT------------TGGGCTTCSEEEEESCCCS--CC-GGGTTCTTCCEEEEECTTCBGGG
T ss_pred hhcCCccEEeccCCCcc-ChH------------HHhcCCCCCEEEccCCCCC--cc-hhhhcCCCCCEEEeECCccCccc
Confidence 45678999999999998 566 5888999999999999775 23 36889999999999999998777
Q ss_pred CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc-c---ccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092 89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI-S---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~-~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 164 (179)
+..+..+++|++|++++|.+.+..+..+..+++|+.+.+.+.. . ..+..+++|++|++++|.+.+ ++ .+ ..++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l-~~l~ 181 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GI-EDFP 181 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TG-GGCS
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-Hh-ccCC
Confidence 8889999999999999999987778888899999987766542 1 257788999999999999998 44 33 4499
Q ss_pred CCcEEEccCCcccc
Q 042092 165 SLEVLDLSYNKLSL 178 (179)
Q Consensus 165 ~L~~L~l~~n~l~~ 178 (179)
+|+.|++++|+|.+
T Consensus 182 ~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 182 KLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEEECBC----
T ss_pred CCCEEEeeCcccCC
Confidence 99999999999875
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=8.1e-19 Score=131.48 Aligned_cols=154 Identities=18% Similarity=0.115 Sum_probs=125.8
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
.+..+++|+.|++++|.+++ ++ ....+++|++|++++|.++ ..+..+..+++|++|++++|+++.
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~-~~------------~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~ 114 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTK-LQ------------VDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTS 114 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCE-EE------------CCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCC
T ss_pred HhhcCCCCCEEECCCCccCc-cc------------CCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcc
Confidence 34556677777777777763 33 2367899999999999996 567778899999999999999997
Q ss_pred CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhc
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFT 161 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 161 (179)
..+..|..+++|++|++++|.+....+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.. +|..++.
T Consensus 115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~ 193 (290)
T 1p9a_G 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFG 193 (290)
T ss_dssp CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcc
Confidence 7778899999999999999999966667788888888865553 333456778999999999999997 7777776
Q ss_pred CCCCCcEEEccCCccc
Q 042092 162 KLKSLEVLDLSYNKLS 177 (179)
Q Consensus 162 ~l~~L~~L~l~~n~l~ 177 (179)
..+|+.+++++|++.
T Consensus 194 -~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 194 -SHLLPFAFLHGNPWL 208 (290)
T ss_dssp -TCCCSEEECCSCCBC
T ss_pred -cccCCeEEeCCCCcc
Confidence 789999999999875
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=5.5e-19 Score=144.23 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=70.0
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
+..++.|+.|++++|.+++..+ ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.++..
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDT-----------YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred HccCCCCcEEECCCCCCCCCCh-----------HHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 4456677777777777775555 56666777777777777766 34555566677777777777776644
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l 127 (179)
.+..|..+++|++|++++|.+.+..|..+..+++|+.+.+
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 4444566677777777777766555556666666655333
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=3e-19 Score=132.59 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=101.2
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
.+...++|+.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.+..
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIED-----------GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECT-----------TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCC
T ss_pred HhccccCCcEEECCCCcCCccCH-----------HHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccc
Confidence 34456777888888887775444 45666666777777776665 3444556666666666666666664
Q ss_pred CCCccccCCCCccEEEcCCCccCCC-CCCcCCCCcccccccccCC--------------------------------ccc
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSGH-IPSSLSNLEQLREKKLTCS--------------------------------ISS 133 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~~~l~~~--------------------------------~~~ 133 (179)
..+..+..+++|++|++++|.+.+. +|..+..+++|+.+.+.+. ++.
T Consensus 115 ~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 4444556666666666666666532 3555555555555333321 111
Q ss_pred cccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 134 CIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 134 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
......+|++|++++|.+++ ++...+..+++|+.|++++|++++
T Consensus 195 ~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 195 GAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCcccc
Confidence 22223478999999999987 555555669999999999999875
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.1e-19 Score=143.41 Aligned_cols=130 Identities=26% Similarity=0.314 Sum_probs=113.1
Q ss_pred ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092 47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~ 126 (179)
+.|+++++++|.++ ...+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.+.
T Consensus 275 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 57899999999997 56677789999999999999999988888999999999999999999877788889999998866
Q ss_pred ccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 127 LTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 127 l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+.+ ..+..+..+++|++|++++|.+++ ++...+..+++|+.|++++|++++
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCccc
Confidence 553 456778889999999999999998 555555669999999999999986
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=8.8e-19 Score=135.98 Aligned_cols=106 Identities=16% Similarity=0.051 Sum_probs=63.2
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
+...++|+.|++++|.+.+..+ ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.++..
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l 132 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDT-----------YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 132 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred hcccccCcEEECCCCcccccCh-----------hhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcC
Confidence 3445667777777777664444 45666666666666666665 34445556666666666666666633
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~ 125 (179)
.+..|..+++|++|++++|.+.+..+..+..+++|+.+
T Consensus 133 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 33334566666666666666654445555555555553
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=141.12 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=123.0
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
..++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus 32 ~~l~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-----------DEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp TTCSEEECCSSCCCEECT-----------TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred CCCcEEECCCCccceECH-----------hHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCccc
Confidence 467889999999886666 67888999999999999887 456778889999999999999988666667
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 166 (179)
|..+++|++|++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L 178 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGL 178 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCC
Confidence 88889999999999998877788888888888866554 345567788889999999988887 444444458888
Q ss_pred cEEEccCCcccc
Q 042092 167 EVLDLSYNKLSL 178 (179)
Q Consensus 167 ~~L~l~~n~l~~ 178 (179)
+.|++++|.+++
T Consensus 179 ~~L~l~~n~i~~ 190 (477)
T 2id5_A 179 IVLRLRHLNINA 190 (477)
T ss_dssp CEEEEESCCCCE
T ss_pred cEEeCCCCcCcE
Confidence 888888877653
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=3.3e-19 Score=132.39 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=123.0
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEECT-----------TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccEEECCCCcccccCH-----------hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 469999999999986555 67889999999999999997 456667899999999999999999777788
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
+..+++|+++++++|.+.+..+..+..+++|+.+.+.+ .+|..+..+++|++|++++|.+.+..+..+.. +++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence 99999999999999999866666788889998866653 25778888999999999999998844433322 333
Q ss_pred Cc----EEEccCCccc
Q 042092 166 LE----VLDLSYNKLS 177 (179)
Q Consensus 166 L~----~L~l~~n~l~ 177 (179)
|+ .|++++|.++
T Consensus 175 L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CTTCCEEEECCSSCCC
T ss_pred ccccceeeecCCCccc
Confidence 33 5556555554
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=137.62 Aligned_cols=136 Identities=20% Similarity=0.189 Sum_probs=73.4
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC-ccccCCCCccEEEcCCC-ccCCCCCCcCCC
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP-PSFCNLTQLMHLDLSSN-ILSGHIPSSLSN 118 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~l~l~~n-~l~~~~~~~~~~ 118 (179)
..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+ ..+..+++|+++++++| .+....+..+..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 34555555555555555554 2333334555555555555555553222 24455555555555555 233333444555
Q ss_pred Cccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 119 LEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 119 l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+++|+.+.+. +..+..+..+++|++|++++|.+.. ++..+...+++|+.|++++|.+++
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccc
Confidence 5555543332 2335556666667777777777655 444444447777777777777654
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.5e-19 Score=126.49 Aligned_cols=129 Identities=29% Similarity=0.280 Sum_probs=65.1
Q ss_pred cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092 48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127 (179)
Q Consensus 48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l 127 (179)
++++|++++|.++ ...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.+.+
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555555554 233333445555555555555555433334445555555555555555333333444555544333
Q ss_pred cC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 128 TC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 128 ~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
.+ ..+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|++++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec
Confidence 22 222234455666666666666665 333333346666666666666543
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.4e-19 Score=134.08 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=115.3
Q ss_pred chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC-CCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG-SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
.+..+++|++|++++|.+. ...+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 6788999999999999997 4667778899999999999999885 5788899999999999999999977788899999
Q ss_pred ccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCC-CCCcEEEccCCcccc
Q 042092 121 QLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL-KSLEVLDLSYNKLSL 178 (179)
Q Consensus 121 ~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~ 178 (179)
+|+.+.+.+ ..+..+..+++|++|++++|.+.+..+..+.. + ++|+.|++++|++++
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC-CCTTCCEEECTTCCEEC
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh-hhccCCEEEccCCCeec
Confidence 998866654 33446778899999999999999866665555 6 489999999999875
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.2e-19 Score=149.22 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=127.1
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccc------cC-------------------
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDF------NY------------------- 61 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i------~~------------------- 61 (179)
.|....+++.|+|+++.+.|.+| +.++.+++|+.|++++|.+ .+
T Consensus 76 ~C~~~~~V~~L~L~~~~l~g~lp-----------~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 144 (636)
T 4eco_A 76 SLNSNGRVTGLSLEGFGASGRVP-----------DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144 (636)
T ss_dssp EECTTCCEEEEECTTSCCEEEEC-----------GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTH
T ss_pred EEcCCCCEEEEEecCcccCCcCC-----------hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhh
Confidence 45445789999999999998888 8899999999999988854 00
Q ss_pred ---------------------------------------------------CcccccccCCCCccEEEeccCCCCCC---
Q 042092 62 ---------------------------------------------------SKISYGFSQFRSLTILNLRHYNFRGS--- 87 (179)
Q Consensus 62 ---------------------------------------------------~~~~~~~~~l~~L~~L~l~~~~l~~~--- 87 (179)
...|..+.++++|++|++++|.+++.
T Consensus 145 l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~ 224 (636)
T 4eco_A 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC 224 (636)
T ss_dssp HHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred HHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccc
Confidence 01456678889999999999998864
Q ss_pred --------------CCcccc--CCCCccEEEcCCCccCCCCCCcCCCCccccccccc------C-CccccccCC------
Q 042092 88 --------------IPPSFC--NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT------C-SISSCIFEL------ 138 (179)
Q Consensus 88 --------------~~~~l~--~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~------~-~~~~~~~~~------ 138 (179)
+|..++ .+++|++|++++|.+.+.+|..+..+++|+.+.+. + .+|..++.+
T Consensus 225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l 304 (636)
T 4eco_A 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304 (636)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence 788888 89999999999999888889889988888885554 3 456666655
Q ss_pred CcccEEEcCCCccCCchhh--HhhcCCCCCcEEEccCCcccc
Q 042092 139 VNLTKVSLSSNNLSSNVEL--YMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 139 ~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~ 178 (179)
++|++|++++|.+.. +|. .+.. +++|++|++++|.++|
T Consensus 305 ~~L~~L~L~~n~l~~-ip~~~~l~~-l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 305 EKIQIIYIGYNNLKT-FPVETSLQK-MKKLGMLECLYNQLEG 344 (636)
T ss_dssp GTCCEEECCSSCCSS-CCCHHHHTT-CTTCCEEECCSCCCEE
T ss_pred CCCCEEECCCCcCCc-cCchhhhcc-CCCCCEEeCcCCcCcc
Confidence 889999999999985 766 4444 8999999999998875
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.5e-18 Score=137.21 Aligned_cols=86 Identities=19% Similarity=0.095 Sum_probs=47.7
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-----------DTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp TTCSEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CCccEEECcCCcCceECH-----------HHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhh
Confidence 355666666666664444 45555555666666665554 334445555555555555555555444444
Q ss_pred ccCCCCccEEEcCCCccC
Q 042092 92 FCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~ 109 (179)
|..+++|++|++++|.+.
T Consensus 143 ~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp SSSCTTCCEEECCSCCCC
T ss_pred hcccCCCCEEECCCCCcc
Confidence 555555555555555554
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=136.71 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=20.5
Q ss_pred cccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 134 CIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 134 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
.+..+++|++|++++|.+.+..+. .+..+++|+.|++++|+++
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTSCCC
T ss_pred hhccCccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCCCCC
Confidence 344444455555555555442222 2233555666666665554
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=4.1e-19 Score=140.13 Aligned_cols=136 Identities=19% Similarity=0.128 Sum_probs=110.0
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
++++.|++++|.+++..| ..+..+++|++|++++|.+.+...+..|.++++|++|++++|.+++..|..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-----------TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEECT-----------TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CccCEEEecCCccCcCCh-----------hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 578999999999987667 788999999999999998864444677889999999999999998777888
Q ss_pred ccCCCCccEEEcCCCccCCCCCCc--CCCCcccccccccC-----Ccccc-ccCCCcccEEEcCCCccCCchhhH
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSS--LSNLEQLREKKLTC-----SISSC-IFELVNLTKVSLSSNNLSSNVELY 158 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~--~~~l~~L~~~~l~~-----~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~ 158 (179)
+..+++|++|++++|.+.+..+.. +..+++|+.+.+.+ ..|.. +..+++|++|++++|.+.+..+..
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 999999999999999987644443 77888888755543 34544 678889999999999988755543
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=136.41 Aligned_cols=157 Identities=25% Similarity=0.287 Sum_probs=112.5
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCcccc------------------------CC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFN------------------------YS 62 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~------------------------~~ 62 (179)
.+..+++|+.|++++|.++...+ ..+..+++|++|++++|.++ ..
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPN-----------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCT-----------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred hccCCccCCEEECCCCcCCeeCH-----------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 45566778888888887774433 34555555555555555543 12
Q ss_pred cccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccC
Q 042092 63 KISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFE 137 (179)
Q Consensus 63 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~ 137 (179)
..+..|.++++|++|++++|.++ ..| .+..+++|++|++++|.+.+..|..+..+++|+.+.+. +..+..+..
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 22334566777777777777776 334 36677888888888888887778888888888875554 345667788
Q ss_pred CCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 138 LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 138 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+++|++|++++|.+++ ++...+..+++|+.|++++|++.
T Consensus 254 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCc-cChhHhccccCCCEEEcCCCCcc
Confidence 9999999999999998 55555666999999999999874
No 36
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=8.4e-18 Score=119.88 Aligned_cols=148 Identities=24% Similarity=0.169 Sum_probs=122.1
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
++++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN-----------GVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp TTCSEEECCSSCCCCCCT-----------TTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEcCCCccCcCCh-----------hhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 578999999999986555 56788999999999999997 456666789999999999999999776667
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 166 (179)
+..+++|+++++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.+ .+++|
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l 167 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGI 167 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTT
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCH
Confidence 88999999999999999866666788888888866553 334457788999999999998875 25667
Q ss_pred cEEEccCCccccC
Q 042092 167 EVLDLSYNKLSLC 179 (179)
Q Consensus 167 ~~L~l~~n~l~~~ 179 (179)
+.|+++.|.++|.
T Consensus 168 ~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 168 RYLSEWINKHSGV 180 (208)
T ss_dssp HHHHHHHHHCTTT
T ss_pred HHHHHHHHhCCce
Confidence 7788888877763
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=6.1e-19 Score=133.29 Aligned_cols=155 Identities=19% Similarity=0.134 Sum_probs=109.0
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccch--hccccceEEEeeCccccCCcccccccCC-----CCccEEEeccC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESL--FFILHSQNLNLCGNDFNYSKISYGFSQF-----RSLTILNLRHY 82 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~l~~~ 82 (179)
..++|++|++++|.+++.+| ..+ ..+++|++|++++|.+++ . +..+..+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAP-----------PPLLEATGPDLNILNLRNVSWAT-R-DAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCC-----------CCSSSCCSCCCSEEEEESCBCSS-S-SSHHHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCcccchhH-----------HHHHHhcCCCccEEEccCCCCcc-h-hHHHHHHHHhhcCCCcEEEeeCC
Confidence 46788999999999888777 555 778888999999998873 3 5556655 88889999998
Q ss_pred CCCCCCCccccCCCCccEEEcCCCccCCC--CCCcC--CCCcccccccccCCccc--------cccCCCcccEEEcCCCc
Q 042092 83 NFRGSIPPSFCNLTQLMHLDLSSNILSGH--IPSSL--SNLEQLREKKLTCSISS--------CIFELVNLTKVSLSSNN 150 (179)
Q Consensus 83 ~l~~~~~~~l~~l~~L~~l~l~~n~l~~~--~~~~~--~~l~~L~~~~l~~~~~~--------~~~~~~~L~~L~l~~n~ 150 (179)
.+.+..+..++.+++|++|++++|.+.+. .+..+ ..+++|+.+.+.+.... .+..+++|++|++++|.
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 88877778888888888999888886543 23333 66677776555543222 12345677777777777
Q ss_pred cCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 151 ~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+.+.++...+..+++|++|++++|.++
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCcccchhhhhhcCCCCEEECCCCccC
Confidence 776443333344667777777777665
No 38
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.4e-18 Score=126.54 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=97.7
Q ss_pred hhcccCceeeeccccc-CCCCCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCCCC
Q 042092 8 CARNCAFMNRLLHYSC-LSNSFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYNFR 85 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (179)
+...++|+.|++++|. ++...+ ..+..+++|++|++++ |.++ ...+..|.++++|++|++++|.++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLES-----------HSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECT-----------TTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCH-----------hHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCc
Confidence 3445566666666664 543222 3566667777777776 6665 344455667777777777777766
Q ss_pred CCCCccccCCCCcc---EEEcCCC-ccCCCCCCcCCCCcccc-cccccCC----ccccccCCCcccEEEcCCCc-cCCch
Q 042092 86 GSIPPSFCNLTQLM---HLDLSSN-ILSGHIPSSLSNLEQLR-EKKLTCS----ISSCIFELVNLTKVSLSSNN-LSSNV 155 (179)
Q Consensus 86 ~~~~~~l~~l~~L~---~l~l~~n-~l~~~~~~~~~~l~~L~-~~~l~~~----~~~~~~~~~~L~~L~l~~n~-~~~~~ 155 (179)
+ .|. +..+++|+ ++++++| .+....+..+..+++|+ .+.+.+. ++......++|++|++++|. +++ +
T Consensus 119 ~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~-i 195 (239)
T 2xwt_C 119 M-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV-I 195 (239)
T ss_dssp S-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCE-E
T ss_pred c-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCccc-C
Confidence 4 444 66666666 7777777 66644455677777777 6555432 33333333678888888884 776 5
Q ss_pred hhHhhcCC-CCCcEEEccCCcccc
Q 042092 156 ELYMFTKL-KSLEVLDLSYNKLSL 178 (179)
Q Consensus 156 ~~~~~~~l-~~L~~L~l~~n~l~~ 178 (179)
+...+..+ ++|+.|++++|++++
T Consensus 196 ~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CHHHhhccccCCcEEECCCCcccc
Confidence 44444557 888888888888764
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=138.24 Aligned_cols=157 Identities=21% Similarity=0.191 Sum_probs=118.9
Q ss_pred hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092 6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR 85 (179)
Q Consensus 6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (179)
..+...++|+.|++++|.+++..| ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.+.
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEP-----------GAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCC
T ss_pred hHccCCCCCCEEECCCCccCEeCh-----------hhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccc
Confidence 345667899999999999987767 78899999999999999987 455566788999999999999998
Q ss_pred CCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhh
Q 042092 86 GSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMF 160 (179)
Q Consensus 86 ~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 160 (179)
...+..|..+++|++|++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|+.|++++|.+.+..+ ..+
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~ 196 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-YSF 196 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-TCS
T ss_pred cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-hhc
Confidence 77788888899999999999998877777888888888755543 222345666777777777777766332 223
Q ss_pred cCCCCCcEEEccCCc
Q 042092 161 TKLKSLEVLDLSYNK 175 (179)
Q Consensus 161 ~~l~~L~~L~l~~n~ 175 (179)
..+++|+.|++++|.
T Consensus 197 ~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 197 KRLYRLKVLEISHWP 211 (477)
T ss_dssp CSCTTCCEEEEECCT
T ss_pred ccCcccceeeCCCCc
Confidence 335666666655543
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=1.5e-18 Score=141.52 Aligned_cols=153 Identities=21% Similarity=0.172 Sum_probs=112.6
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...|..
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-----------YSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcCEeCh-----------hhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 567888888888876555 67888888888888888887 455677888888888888888888777888
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
|+.+++|++|++++|.+.+..+..++.+++|+.+.+.+ .+|..++.+++|++|++++|.+.+..+..+.. +++
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~ 178 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRE 178 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHH
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhc
Confidence 88888888888888888756557788888888755543 35677788888888888888887744433222 332
Q ss_pred ----CcEEEccCCccc
Q 042092 166 ----LEVLDLSYNKLS 177 (179)
Q Consensus 166 ----L~~L~l~~n~l~ 177 (179)
+..+++++|.++
T Consensus 179 L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPID 194 (606)
T ss_dssp CTTCCCEEECTTCCCC
T ss_pred cccccceeeccCCCcc
Confidence 235666666554
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.4e-18 Score=136.11 Aligned_cols=156 Identities=25% Similarity=0.277 Sum_probs=96.3
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccc-------------------
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYG------------------- 67 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~------------------- 67 (179)
.+..+++|+.|++++|.++...+ ..+..+++|++|++++|.++ ...+..
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPS-----------GAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCT-----------TTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC
T ss_pred hccCcccCCEEECCCCcCCccCh-----------hhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCcc
Confidence 44567788888888888875444 44666667777777777664 233333
Q ss_pred ------ccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCcccccc
Q 042092 68 ------FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIF 136 (179)
Q Consensus 68 ------~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~ 136 (179)
+.++++|++|++++|.+++. | .+..+++|++|++++|.+.+..|..+..+++|+.+.+. +..+..+.
T Consensus 186 ~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 186 YISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence 44555555555555555532 2 34555666666666666665556666666666664443 23345566
Q ss_pred CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 137 ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 137 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
.+++|++|++++|.+++ ++...+..+++|+.|++++|++.
T Consensus 264 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCCcC
Confidence 67777777777777776 44444445777777777777653
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=1.6e-18 Score=141.24 Aligned_cols=134 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred cchhccccceEEEeeCccccCCccc-ccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCC-CCCCcCCC
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKIS-YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG-HIPSSLSN 118 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~-~~~~~~~~ 118 (179)
..+..+++|++|++++|.+.+ ..+ ..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+ ..|..+..
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEES-TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhccCCCCCCeeECCCCccCC-ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 344455555555555555542 222 344455555555555555544444444455555555555555443 23444444
Q ss_pred Cccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092 119 LEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176 (179)
Q Consensus 119 l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 176 (179)
+++|+.+.+. +..+..+..+++|++|++++|.+.+..|..+.. +++|+.|++++|++
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRI 533 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcC
Confidence 4444443322 222333444444444444444444433332222 44444444444444
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=1.4e-18 Score=141.61 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=117.3
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
..+++|||++|.+++..+ ..|..+++|++|++++|.++ ...+.+|.++++|++|++++|+++...+..
T Consensus 52 ~~~~~LdLs~N~i~~l~~-----------~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCEEEeeCCCCCCCCH-----------HHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 367899999999986555 67888999999999999987 456777889999999999999988666667
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhc--CC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFT--KL 163 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~l 163 (179)
|..+++|++|++++|.+.+..+..++.+++|+.+.+.+ ..|..++.++.|++|++++|.+.+..+..+.. .+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 88899999999999999866566788888888866654 24566777888999999999888754443321 12
Q ss_pred C-CCcEEEccCCccc
Q 042092 164 K-SLEVLDLSYNKLS 177 (179)
Q Consensus 164 ~-~L~~L~l~~n~l~ 177 (179)
+ ....++++.|.++
T Consensus 200 ~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMN 214 (635)
T ss_dssp TTCCCEEECTTCCCC
T ss_pred hhhhhhhhcccCccc
Confidence 2 2335677776654
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=6.8e-18 Score=139.32 Aligned_cols=155 Identities=19% Similarity=0.130 Sum_probs=123.7
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.++...+..
T Consensus 25 ~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA-----------ANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp TTCSEEECCSSCCCCCCG-----------GGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEECCCCCCCCcCH-----------HHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhh
Confidence 578899999999886555 67888999999999999987 466777888999999999999988665557
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhh-cCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMF-TKLKS 165 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~ 165 (179)
|+.+++|+++++++|.+.+..+..+..+++|+++++. +..+..+..+++|++|++++|.+.+..+..+. ..+++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 8889999999999999886666788888888886554 34556677888999999999998885554432 23678
Q ss_pred CcEEEccCCcccc
Q 042092 166 LEVLDLSYNKLSL 178 (179)
Q Consensus 166 L~~L~l~~n~l~~ 178 (179)
|+.|++++|.+++
T Consensus 173 L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 173 LKKLELSSNQIKE 185 (680)
T ss_dssp ESEEECTTCCCCC
T ss_pred ccEEECCCCcccc
Confidence 9999999988764
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=134.13 Aligned_cols=152 Identities=19% Similarity=0.143 Sum_probs=126.7
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
++++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.++...+..
T Consensus 52 ~~L~~L~l~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN-----------SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccCcEEECCCCcCcccCH-----------HHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 478999999999985444 57899999999999999997 456777999999999999999999655555
Q ss_pred ccCCCCccEEEcCCCccCCCCCC--cCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPS--SLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL 163 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 163 (179)
+..+++|+++++++|.+. .+|. .+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.+..+..+.. +
T Consensus 120 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l 197 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-I 197 (353)
T ss_dssp HTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-C
T ss_pred hCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-c
Confidence 889999999999999998 4454 788899998866554 23556788999999999999999855665554 9
Q ss_pred CCCcEEEccCCccc
Q 042092 164 KSLEVLDLSYNKLS 177 (179)
Q Consensus 164 ~~L~~L~l~~n~l~ 177 (179)
++|++|++++|.++
T Consensus 198 ~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 198 QNVSHLILHMKQHI 211 (353)
T ss_dssp SEEEEEEEECSCST
T ss_pred ccCCeecCCCCccc
Confidence 99999999999875
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=5.5e-18 Score=138.12 Aligned_cols=135 Identities=26% Similarity=0.258 Sum_probs=61.3
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCC---CCCcCC
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH---IPSSLS 117 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~---~~~~~~ 117 (179)
..+..+++|++|++++|.+++...+..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+. .+..+.
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence 34444555555555555544211222344555555555555555444444445555555555555554321 112344
Q ss_pred CCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 118 NLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 118 ~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
.+++|+.+.+. +..|..+..+++|++|++++|.+.+..+..+.. +++| .|++++|.++
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGI-YLNLASNHIS 536 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT-CCSC-EEECCSSCCC
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc-cccc-EEECcCCccc
Confidence 44444443222 223344444555555555555555433333222 4555 5555555444
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=3.9e-18 Score=138.99 Aligned_cols=154 Identities=15% Similarity=0.043 Sum_probs=130.4
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
..++.|++++|.+++..| ..+..+++|++|++++|.+. ...+..|.++++|++|++++|.+.+..|..
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-----------TTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp TTCCEEECTTCCCSEECT-----------TTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CcCcEEEccCCccCcCCh-----------hHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhh
Confidence 468999999999997667 78999999999999999997 567888999999999999999999888889
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 166 (179)
++.+++|++|++++|.+.+..+..+..+++|+.+.+.+. ....+..+++|++|++++|.+.+..+..+.. +++|
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L 179 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQA 179 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT-TTTC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh-hccc
Confidence 999999999999999998666788899999998776653 2233444889999999999999855555544 9999
Q ss_pred c--EEEccCCcccc
Q 042092 167 E--VLDLSYNKLSL 178 (179)
Q Consensus 167 ~--~L~l~~n~l~~ 178 (179)
+ .|++++|.+++
T Consensus 180 ~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 180 TNLSLNLNGNDIAG 193 (606)
T ss_dssp CSEEEECTTCCCCE
T ss_pred ceeEEecCCCccCc
Confidence 8 89999998865
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=2.6e-18 Score=138.49 Aligned_cols=155 Identities=20% Similarity=0.172 Sum_probs=96.8
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.+++|++++|.+++..| ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.+++..+..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-----------GDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEECS-----------STTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CCccEEECcCCccCccCh-----------hhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHH
Confidence 467777787777775555 56677777777777777776 344556677777777777777776555555
Q ss_pred ccCCCCccEEEcCCCccCC-CCCCcCCCCcccccccccC-----Ccc-ccccCCCcccEEEcCCCccCCc----------
Q 042092 92 FCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLREKKLTC-----SIS-SCIFELVNLTKVSLSSNNLSSN---------- 154 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~~~l~~-----~~~-~~~~~~~~L~~L~l~~n~~~~~---------- 154 (179)
++.+++|++|++++|.+.+ ..|..+..+++|+.+.+.+ .++ ..+..+++|++|++++|.+.+.
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 6677777777777777654 2345566666666544332 122 3445555555555555555443
Q ss_pred -------------hhhHhhcCCCCCcEEEccCCcccc
Q 042092 155 -------------VELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 155 -------------~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
++..+...+++|+.|++++|.+++
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 333333447788888888887765
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=139.28 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=117.0
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
.++|+.|++++|.+.+ ++ ..+..+++|++|++++|.+.+......+..+++|++|++++|.+.+..|.
T Consensus 372 ~~~L~~L~l~~n~l~~-~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 372 TTSLKYLDLSFNGVIT-MS-----------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp CSCCCEEECCSCSEEE-EE-----------EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cCccCEEECCCCcccc-cc-----------ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 4455555555555542 22 34777888888888888886322235677888999999999988877788
Q ss_pred cccCCCCccEEEcCCCccC-CCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092 91 SFCNLTQLMHLDLSSNILS-GHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~-~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 164 (179)
.+..+++|+++++++|.+. +.+|..+..+++|+.+.+. +..|..+..+++|++|++++|.+++..+. .+..++
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~ 518 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-IFDRLT 518 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCT
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH-Hhhccc
Confidence 8888899999999999886 4678888888888875554 34567788889999999999999884443 444589
Q ss_pred CCcEEEccCCcccc
Q 042092 165 SLEVLDLSYNKLSL 178 (179)
Q Consensus 165 ~L~~L~l~~n~l~~ 178 (179)
+|+.|++++|++++
T Consensus 519 ~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 519 SLQKIWLHTNPWDC 532 (570)
T ss_dssp TCCEEECCSSCBCC
T ss_pred CCcEEEecCCcccC
Confidence 99999999999876
No 50
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=132.48 Aligned_cols=82 Identities=22% Similarity=0.173 Sum_probs=39.1
Q ss_pred ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092 45 FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE 124 (179)
Q Consensus 45 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 124 (179)
.+++|+.|++++|.++ ...+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 4455555555555554 233334445555555555555554333334444555555555555554444444444444444
Q ss_pred ccc
Q 042092 125 KKL 127 (179)
Q Consensus 125 ~~l 127 (179)
+.+
T Consensus 141 L~L 143 (361)
T 2xot_A 141 LYL 143 (361)
T ss_dssp EEC
T ss_pred EEC
Confidence 333
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=7.3e-18 Score=116.34 Aligned_cols=136 Identities=18% Similarity=0.113 Sum_probs=111.0
Q ss_pred ccCceeeecccccCC-CCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 11 NCAFMNRLLHYSCLS-NSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
.+.++.|++++|.++ +.+| ..+..+++|+.|++++|.+++ . ..+..+++|++|++++|.+.+..|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~-----------~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE-----------GLTAEFVNLEFLSLINVGLIS-V--SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS-----------SCCGGGGGCCEEEEESSCCCC-C--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred cccCCEEECCCCCCChhhHH-----------HHHHhCCCCCEEeCcCCCCCC-h--hhhccCCCCCEEECcCCcCchHHH
Confidence 378999999999998 6778 678899999999999999973 3 668899999999999999997677
Q ss_pred ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchh--hHhhcCCCCCc
Q 042092 90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE--LYMFTKLKSLE 167 (179)
Q Consensus 90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~ 167 (179)
..+..+++|++|++++|.+.+. +. +..+..+++|++|++++|.+.+..+ ...+..+++|+
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~-~~-----------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDI-ST-----------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSS-GG-----------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred HHHhhCCCCCEEeccCCccCcc-hh-----------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 7777799999999999998732 21 1334556789999999999998433 13455699999
Q ss_pred EEEccCCcccc
Q 042092 168 VLDLSYNKLSL 178 (179)
Q Consensus 168 ~L~l~~n~l~~ 178 (179)
.|+++.|.++.
T Consensus 151 ~L~l~~n~~~~ 161 (168)
T 2ell_A 151 YLDGYDREDQE 161 (168)
T ss_dssp EETTEETTSCB
T ss_pred EecCCCCChhh
Confidence 99999998753
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=9.5e-18 Score=130.16 Aligned_cols=92 Identities=23% Similarity=0.175 Sum_probs=70.8
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
.+...++|+.|++++|.+++..| ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+..
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPP-----------HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred hccCCCCcCEEECCCCCCCcCCH-----------HHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc
Confidence 44567888999999998886666 66778888888888888886 3444556778888888888888876
Q ss_pred CCCccccCCCCccEEEcCCCccCC
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSG 110 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~ 110 (179)
..+..+..+++|++|++++|.+.+
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred cChhhccCCCCCCEEECCCCcCCc
Confidence 666677778888888888887764
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=136.42 Aligned_cols=156 Identities=24% Similarity=0.258 Sum_probs=126.1
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCC-cccccccCCCCccEEEeccCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS-KISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
...+.|+.|++++|.+++.+| ..+..+++|++|++++|.+++. ..+..+..+++|++|++++|.+.+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF-----------ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-----------TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred hhCCcccEEEeECCccChhhh-----------hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 456788999999999988777 7888999999999999999720 2345688999999999999999874
Q ss_pred CCc-cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092 88 IPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 88 ~~~-~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
.|. .+..+++|+++++++|.+.+..|..+. ++|+.+.+.+ .+|..+..+++|++|++++|.++. +|...+..
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhcc
Confidence 555 477889999999999999877776653 4555544443 567777789999999999999997 66654555
Q ss_pred CCCCcEEEccCCcccc
Q 042092 163 LKSLEVLDLSYNKLSL 178 (179)
Q Consensus 163 l~~L~~L~l~~n~l~~ 178 (179)
+++|+.|++++|++++
T Consensus 467 l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CCcccEEECcCCCCcc
Confidence 9999999999999976
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=137.56 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=126.5
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...|..
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCEECT-----------TTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCccCh-----------hHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 468999999999986666 68899999999999999987 456677899999999999999998777788
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
|..+++|++|++++|.+....+..++.+++|+++.+.+ .+|..++.+++|++|++++|.+.+..+..+.. +++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhc
Confidence 99999999999999999855455688888888866654 35778888999999999999998855544443 666
Q ss_pred C----cEEEccCCcccc
Q 042092 166 L----EVLDLSYNKLSL 178 (179)
Q Consensus 166 L----~~L~l~~n~l~~ 178 (179)
| ..+++++|.+++
T Consensus 175 L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CTTCCCEEECTTCCCCE
T ss_pred cchhhhhcccCCCCcee
Confidence 6 788888887754
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=2.3e-18 Score=125.31 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=124.8
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCcc-ccCCcccccccCCCCccEEEecc-CCCCCCCC
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGND-FNYSKISYGFSQFRSLTILNLRH-YNFRGSIP 89 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~ 89 (179)
..++.|++++|.+++..+ ..+..+++|++|++++|. ++ ...+..|.++++|++|++++ |.++...+
T Consensus 31 ~~l~~L~l~~n~l~~i~~-----------~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS-----------HAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TTCCEEEEESCCCSEECT-----------TTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CcccEEEEeCCcceEECH-----------HHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 378999999999986555 578899999999999997 76 45566789999999999999 99997777
Q ss_pred ccccCCCCccEEEcCCCccCCCCCCcCCCCcccc---cccccC------CccccccCCCccc-EEEcCCCccCCchhhHh
Q 042092 90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR---EKKLTC------SISSCIFELVNLT-KVSLSSNNLSSNVELYM 159 (179)
Q Consensus 90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~---~~~l~~------~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~ 159 (179)
..|..+++|+++++++|.+.+ +|. +..+++|+ .+.+.+ ..+..+..+++|+ +|++++|.+.. +|...
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhh
Confidence 789999999999999999984 666 77777777 654443 3345578889999 99999999996 77666
Q ss_pred hcCCCCCcEEEccCCc-ccc
Q 042092 160 FTKLKSLEVLDLSYNK-LSL 178 (179)
Q Consensus 160 ~~~l~~L~~L~l~~n~-l~~ 178 (179)
+. .++|+.|++++|+ +++
T Consensus 176 ~~-~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 176 FN-GTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp TT-TCEEEEEECTTCTTCCE
T ss_pred cC-CCCCCEEEcCCCCCccc
Confidence 66 4899999999995 753
No 56
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=7.1e-18 Score=129.89 Aligned_cols=157 Identities=28% Similarity=0.271 Sum_probs=127.0
Q ss_pred hhhhcc--cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccccc-CCCCccEEEeccC
Q 042092 6 SECARN--CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFS-QFRSLTILNLRHY 82 (179)
Q Consensus 6 ~~~~~~--~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~~~ 82 (179)
..|+.. +.-+.++.+++.++ .+| ..+ ...++.|++++|.++ ...+..+. .+++|+.|++++|
T Consensus 10 ~~Cp~~C~C~~~~l~c~~~~l~-~iP-----------~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N 74 (361)
T 2xot_A 10 VSCPANCLCASNILSCSKQQLP-NVP-----------QSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN 74 (361)
T ss_dssp TTCCTTCEEETTEEECCSSCCS-SCC-----------SSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSS
T ss_pred CCCCCCCEECCCEEEeCCCCcC-ccC-----------ccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCC
Confidence 446543 33468999999988 567 433 345899999999997 45566676 8999999999999
Q ss_pred CCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhh
Q 042092 83 NFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVEL 157 (179)
Q Consensus 83 ~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 157 (179)
.++...+..|..+++|++|++++|.+....+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+.+ +|.
T Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~ 153 (361)
T 2xot_A 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPV 153 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCG
T ss_pred cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCH
Confidence 99977778899999999999999999866677889999998866654 346678889999999999999998 655
Q ss_pred Hhh---cCCCCCcEEEccCCcccc
Q 042092 158 YMF---TKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 158 ~~~---~~l~~L~~L~l~~n~l~~ 178 (179)
..+ ..+++|+.|++++|+|++
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCC
T ss_pred HHhcCcccCCcCCEEECCCCCCCc
Confidence 554 458999999999999875
No 57
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=8.4e-18 Score=118.70 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=94.5
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccc-cccCCCCccEEEeccCCCCCCCCcc
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISY-GFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
.-+.++++++.++ .+| ..+. ..+++|++++|.++ ...+. .+..+++|++|++++|.+++..|..
T Consensus 9 ~~~~l~~s~~~l~-~ip-----------~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 9 EGTTVDCTGRGLK-EIP-----------RDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp ETTEEECTTSCCS-SCC-----------SCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred CCCEEEcCCCCcC-cCc-----------cCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhH
Confidence 3478999999997 677 4443 38999999999997 34433 4889999999999999999888899
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEc
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDL 171 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 171 (179)
|..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..|..+. .+++|++|++
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------------------~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L 133 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLH-------------------QLKTLNLYDNQISCVMPGSFE-HLNSLTSLNL 133 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCT-------------------TCCEEECCSSCCCEECTTSST-TCTTCCEEEC
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCC-------------------CCCEEECCCCcCCeeCHHHhh-cCCCCCEEEe
Confidence 99999999999999999866565555554 455555555555553333322 2555555555
Q ss_pred cCCccc
Q 042092 172 SYNKLS 177 (179)
Q Consensus 172 ~~n~l~ 177 (179)
++|+++
T Consensus 134 ~~N~l~ 139 (192)
T 1w8a_A 134 ASNPFN 139 (192)
T ss_dssp TTCCBC
T ss_pred CCCCcc
Confidence 555554
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.2e-17 Score=136.39 Aligned_cols=93 Identities=23% Similarity=0.166 Sum_probs=73.7
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
.+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ ...+..|..+++|++|++++|.+++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPP-----------HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred HhcCCCCCCEEECCCCcCCCCCH-----------HHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence 44567889999999999887666 66788888888888888887 4555556788888888888888887
Q ss_pred CCCccccCCCCccEEEcCCCccCCC
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSGH 111 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~~ 111 (179)
..|..+..+++|++|++++|.+.+.
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CChhhhhcCCcCcEEECcCCCCCCc
Confidence 7777788888888888888877643
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=5.1e-19 Score=145.43 Aligned_cols=157 Identities=15% Similarity=0.220 Sum_probs=84.4
Q ss_pred hhcccCceeeecccccCCCC-----------------CCcchhhhheecccchh--ccccceEEEeeCccccCCcccccc
Q 042092 8 CARNCAFMNRLLHYSCLSNS-----------------FPSRKKLLIFALNESLF--FILHSQNLNLCGNDFNYSKISYGF 68 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~-----------------~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~ 68 (179)
...+++|+.|++++|.+++. +| ..+. .+++|++|++++|.+. ...|..+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-----------~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l 269 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----------EDLKWDNLKDLTDVEVYNCPNL-TKLPTFL 269 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-----------SCCCGGGCTTCCEEEEECCTTC-SSCCTTT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCc-----------hhhhhcccCCCCEEEecCCcCC-ccChHHH
Confidence 34566777777777777753 55 5555 6666666666666665 3455556
Q ss_pred cCCCCccEEEeccCC-CCC-CCCccccCC------CCccEEEcCCCccCCCCCC--cCCCCccccc--------------
Q 042092 69 SQFRSLTILNLRHYN-FRG-SIPPSFCNL------TQLMHLDLSSNILSGHIPS--SLSNLEQLRE-------------- 124 (179)
Q Consensus 69 ~~l~~L~~L~l~~~~-l~~-~~~~~l~~l------~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~-------------- 124 (179)
.++++|++|++++|. +++ ..|..++.+ ++|+++++++|.+. .+|. .+..+++|+.
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~ 348 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPA 348 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhh
Confidence 666666666666665 554 344444433 45555555555554 4444 4444444444
Q ss_pred ---------ccccC----CccccccCCCc-ccEEEcCCCccCCchhhHhhc-CCCCCcEEEccCCcccc
Q 042092 125 ---------KKLTC----SISSCIFELVN-LTKVSLSSNNLSSNVELYMFT-KLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 125 ---------~~l~~----~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~ 178 (179)
+.+.+ .+|..+..+++ |++|++++|.+.. +|..+.. .+++|+.|++++|.++|
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCC
Confidence 33322 23444455555 6666666665553 4433221 12256666666666554
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=2.3e-18 Score=138.81 Aligned_cols=147 Identities=24% Similarity=0.224 Sum_probs=122.6
Q ss_pred eecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCC
Q 042092 17 RLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLT 96 (179)
Q Consensus 17 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 96 (179)
.|.+++.++ .+| ..+ .+.+++|++++|.++ ...+..+.++++|++|++++|.+++..|..|..++
T Consensus 10 c~~~~~~l~-~ip-----------~~~--~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 10 CDGRSRSFT-SIP-----------SGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74 (549)
T ss_dssp EECTTSCCS-SCC-----------SCC--CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EECCCCccc-ccc-----------ccC--CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence 577888887 677 444 378999999999997 46677899999999999999999988888899999
Q ss_pred CccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEE
Q 042092 97 QLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD 170 (179)
Q Consensus 97 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 170 (179)
+|++|++++|.+.+..+..++.+++|+++++.+ ..+..++.+++|++|++++|.+.+.++...+..+++|++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 999999999999977667799999999876654 24567888999999999999955546644455599999999
Q ss_pred ccCCcccc
Q 042092 171 LSYNKLSL 178 (179)
Q Consensus 171 l~~n~l~~ 178 (179)
+++|.+++
T Consensus 155 L~~n~l~~ 162 (549)
T 2z81_A 155 IKALSLRN 162 (549)
T ss_dssp EEETTCCE
T ss_pred ccCCcccc
Confidence 99998875
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=2e-18 Score=130.47 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=111.2
Q ss_pred ccccceEEEeeCccccCCcccccc--cCCCCccEEEeccCCCCCCCCccccCC-----CCccEEEcCCCccCCCCCCcCC
Q 042092 45 FILHSQNLNLCGNDFNYSKISYGF--SQFRSLTILNLRHYNFRGSIPPSFCNL-----TQLMHLDLSSNILSGHIPSSLS 117 (179)
Q Consensus 45 ~l~~L~~L~l~~n~i~~~~~~~~~--~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~l~l~~n~l~~~~~~~~~ 117 (179)
.+++|++|++++|.++ ...+..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+.
T Consensus 93 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 6899999999999998 3555554 8899999999999999966 7777776 8999999999999977778999
Q ss_pred CCcccccccccCCc-------cccc--cCCCcccEEEcCCCccCC--chhhHhhcCCCCCcEEEccCCcccc
Q 042092 118 NLEQLREKKLTCSI-------SSCI--FELVNLTKVSLSSNNLSS--NVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 118 ~l~~L~~~~l~~~~-------~~~~--~~~~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
.+++|+.+.++++. +..+ ..+++|++|++++|.+.+ .++..++..+++|+.|++++|.+++
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 99999998877643 3333 788999999999999985 2344555668999999999999986
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.9e-17 Score=124.89 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=84.6
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
+...++|+.|++++|.+++..| ..+..+++|++|++++|.++ . .+..+. ++|++|++++|.++..
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~-l~~~~~--~~L~~L~l~~n~i~~~ 138 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHE-----------KAFSPLRKLQKLYISKNHLV-E-IPPNLP--SSLVELRIHDNRIRKV 138 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECG-----------GGSTTCTTCCEEECCSSCCC-S-CCSSCC--TTCCEEECCSSCCCCC
T ss_pred hhCCCCCcEEECCCCccCccCH-----------hHhhCcCCCCEEECCCCcCC-c-cCcccc--ccCCEEECCCCccCcc
Confidence 4556677777777777765555 55666666666666666654 1 222111 4444444444444433
Q ss_pred CCccccCCCCccEEEcCCCc----------------------------------------------cCCCCCCcCCCCcc
Q 042092 88 IPPSFCNLTQLMHLDLSSNI----------------------------------------------LSGHIPSSLSNLEQ 121 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~----------------------------------------------l~~~~~~~~~~l~~ 121 (179)
.+..+..+++|+++++++|. +.+..+..+..+++
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCC
Confidence 33334444444444444443 33333344445555
Q ss_pred cccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 122 LREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 122 L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
|+.+.+.+ ..+..+..+++|++|++++|.+.. +|..+.. +++|+.|++++|++++
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~-l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPD-LKLLQVVYLHTNNITK 278 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGG-CTTCCEEECCSSCCCB
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChhhhc-CccCCEEECCCCCCCc
Confidence 55443332 233355666777777777777775 5555444 7777777777777754
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=1.7e-17 Score=126.06 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=92.5
Q ss_pred hhcccCceeeecccccCCCCCCcchh-----------hhheecccchhccccceEEEeeCccccC-CcccccccCCCCcc
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKK-----------LLIFALNESLFFILHSQNLNLCGNDFNY-SKISYGFSQFRSLT 75 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~-----------~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~ 75 (179)
+..+++|+.|++++|.++ .+|.... ++....+..+..+++|++|++++|.+.. ...+..+..+++|+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred hcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 445567777777777766 3331100 0000111335556666777777666631 12344556666666
Q ss_pred EEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCc
Q 042092 76 ILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNN 150 (179)
Q Consensus 76 ~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~ 150 (179)
+|++++|.++ ..|..+. ++|+++++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.
T Consensus 175 ~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 6666666665 3333332 5666666666666655556666666666644443 223345566667777777776
Q ss_pred cCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 151 LSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 151 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+.. +|..+.. +++|++|++++|++++
T Consensus 252 l~~-lp~~l~~-l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 252 LVK-VPGGLAD-HKYIQVVYLHNNNISA 277 (330)
T ss_dssp CSS-CCTTTTT-CSSCCEEECCSSCCCC
T ss_pred Ccc-CChhhcc-CCCcCEEECCCCcCCc
Confidence 664 5544433 6667777777776654
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=143.18 Aligned_cols=156 Identities=23% Similarity=0.202 Sum_probs=122.3
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
.++++.||+++|.+++..+ ..+..+++|++|++++|.......+..|.++++|++|++++|.+....|.
T Consensus 23 p~~l~~LdLs~N~i~~i~~-----------~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA-----------SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CTTCCEEEEESCCCCEECS-----------SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCcCEEECCCCcCCccCh-----------hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 4678999999999987777 78899999999999999665344477889999999999999999988888
Q ss_pred cccCCCCccEEEcCCCccCCCCCCc--CCCCcccccccccC-----Cc-cccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSS--LSNLEQLREKKLTC-----SI-SSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~--~~~l~~L~~~~l~~-----~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
.|..+++|++|++++|.+.+..|.. +..+++|+.+++++ .. +..++.+++|++|++++|.+.+..+..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~- 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP- 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-
Confidence 9999999999999999998766654 88888888866553 22 346788899999999999988755554432
Q ss_pred C--CCCcEEEccCCcccc
Q 042092 163 L--KSLEVLDLSYNKLSL 178 (179)
Q Consensus 163 l--~~L~~L~l~~n~l~~ 178 (179)
+ ++|+.|+++.|.+++
T Consensus 171 l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp HHHCSSCCCEECCSBSCC
T ss_pred ccCCccceEECCCCcccc
Confidence 3 555555555555543
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.5e-17 Score=134.77 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=125.8
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCC-cccccccCCCCccEEEeccCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS-KISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
...++|+.|++++|.+++.+| ..+..+++|++|++++|.+++. ..+..+..+++|+.|++++|.+++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF-----------QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-----------TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cCCCCceEEECCCCccccchh-----------hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 456789999999999998777 7889999999999999999721 1245678999999999999999874
Q ss_pred CCc-cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092 88 IPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 88 ~~~-~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
.|. .+..+++|+++++++|.+.+..|..+. ++|+.+.+.+ .+|..+..+++|++|++++|.+++ +|...+..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhc
Confidence 554 578889999999999999877666553 4565544443 566667788999999999999997 66654555
Q ss_pred CCCCcEEEccCCcccc
Q 042092 163 LKSLEVLDLSYNKLSL 178 (179)
Q Consensus 163 l~~L~~L~l~~n~l~~ 178 (179)
+++|+.|++++|++++
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 9999999999999876
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=2.7e-17 Score=124.96 Aligned_cols=44 Identities=32% Similarity=0.293 Sum_probs=23.8
Q ss_pred ccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 133 SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 133 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.++
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV 253 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCc
Confidence 34455556666666666665533323322 666666666666554
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=6.5e-17 Score=122.01 Aligned_cols=146 Identities=20% Similarity=0.266 Sum_probs=65.6
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI 88 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 88 (179)
..+++|+.|++++|.+. .++ . +..+++|++|++++|.+++ .+ .+..+++|+.|++++|.+++.
T Consensus 60 ~~l~~L~~L~L~~n~i~-~~~-----------~-~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~- 122 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQIT-DLA-----------P-LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDV- 122 (308)
T ss_dssp GGCTTCCEEECCSSCCC-CCG-----------G-GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCC-
T ss_pred hccCCCCEEEccCCcCC-CCh-----------h-HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCc-
Confidence 34455566666666555 233 2 4555555555555555541 22 344555555555555555432
Q ss_pred CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccc---cccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISS---CIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
+ .+..+++|++|++++|.+.+. +. +..+++|+.+.+.+.... .+..+++|++|++++|.+.+ ++. +..+++
T Consensus 123 ~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~ 196 (308)
T 1h6u_A 123 T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP--LASLPN 196 (308)
T ss_dssp G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GGGCTT
T ss_pred h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-Chh--hcCCCC
Confidence 2 244555555555555555422 11 344444444333321100 13334444444444444444 211 122444
Q ss_pred CcEEEccCCccc
Q 042092 166 LEVLDLSYNKLS 177 (179)
Q Consensus 166 L~~L~l~~n~l~ 177 (179)
|++|++++|+++
T Consensus 197 L~~L~L~~N~l~ 208 (308)
T 1h6u_A 197 LIEVHLKNNQIS 208 (308)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEEEccCCccC
Confidence 444444444443
No 68
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.9e-17 Score=118.34 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=113.0
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus 32 ~~l~~L~l~~n~i~~i~~-----------~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-----------GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp TTCCEEECCSSCCCEECT-----------TSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCCCEEECCCCcCCCcCH-----------hHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 478999999999996555 67889999999999999997 566888999999999999999999666666
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~ 153 (179)
|..+++|++|++++|.+.+..+..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+..
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88999999999999999978888999999998865554 444567888999999999999976
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=3.3e-17 Score=135.24 Aligned_cols=142 Identities=24% Similarity=0.201 Sum_probs=119.3
Q ss_pred hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092 6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR 85 (179)
Q Consensus 6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (179)
..+...++|+.|++++|.+++..| ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.+.
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEP-----------ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCT-----------THHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC
T ss_pred HHHhCCCcCcEEECCCCccCccCH-----------HHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccC
Confidence 346677899999999999998778 78999999999999999997 455567999999999999999999
Q ss_pred CCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----cccccc--CCCcccEEEcCCCccCCchhhH
Q 042092 86 GSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIF--ELVNLTKVSLSSNNLSSNVELY 158 (179)
Q Consensus 86 ~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~--~~~~L~~L~l~~n~~~~~~~~~ 158 (179)
+..|..|+.+++|++|++++|.+.+..+..+..+++|+.+.+.+. .+..+. .+++|++|++++|.+.+..+..
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 777788999999999999999998788888999999998776653 233332 4578999999999998855544
Q ss_pred h
Q 042092 159 M 159 (179)
Q Consensus 159 ~ 159 (179)
+
T Consensus 191 ~ 191 (680)
T 1ziw_A 191 F 191 (680)
T ss_dssp G
T ss_pred h
Confidence 3
No 70
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=5e-17 Score=117.72 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=113.6
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.|+.|++++|.+.+..+ ..+..+++|++|++++|.++ ...+..|..+++|+.|++++|.++...+..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP-----------GVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEEcCCCccCccCH-----------HHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 679999999999997777 78899999999999999997 455677889999999999999999777777
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCch
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNV 155 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~ 155 (179)
|..+++|++|++++|.+. .+|..+..+++|+.+.+.+ ..+..+..+++|++|++++|.+....
T Consensus 108 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred hCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 889999999999999999 7888888899998866554 33456778899999999999998743
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=5.6e-17 Score=123.35 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=82.8
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+.+..+ ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++ ..|..
T Consensus 54 ~~l~~L~l~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 120 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRK-----------DDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPN 120 (332)
T ss_dssp TTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCC-SCCSS
T ss_pred CCCeEEECCCCcCCccCH-----------hHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCC-ccCcc
Confidence 579999999999986656 68999999999999999997 466788999999999999999998 55665
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~ 125 (179)
+. ++|+++++++|.+....+..+..+++|+.+
T Consensus 121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred cc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 54 799999999999985555556666666653
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=6.3e-18 Score=135.01 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=89.0
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
.++|+.|++++|.+++..| ..+..+++|++|++++|.++ ...+ +..+++|++|++++|.+++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA-----------ADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELL-- 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG-----------GGGTTCTTCCEEECTTSCCE-EEEE--CTTCTTCCEEECCSSEEEEEE--
T ss_pred CCCccEEEeeCCcCCCCCH-----------HHHhCCCCCCEEEeeCCCCC-CCcc--cccCCCCCEEEecCCcCCCCC--
Confidence 3489999999999997767 78889999999999999986 2333 788889999998888876332
Q ss_pred cccCCCCccEEEcCCCccCCCCCCcCCCCccc--ccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcE
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV 168 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L--~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 168 (179)
..++|++|++++|.+.+..+..+..+..| ..+.+++..+..++.+++|++|++++|.+.+..|..+...+++|+.
T Consensus 97 ---~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 97 ---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp ---ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred ---CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 12455555555555553333322222111 1122333334444445555555555555555444444323455555
Q ss_pred EEccCCccc
Q 042092 169 LDLSYNKLS 177 (179)
Q Consensus 169 L~l~~n~l~ 177 (179)
|++++|.++
T Consensus 174 L~Ls~N~l~ 182 (487)
T 3oja_A 174 LNLQYNFIY 182 (487)
T ss_dssp EECTTSCCC
T ss_pred EecCCCccc
Confidence 555555544
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=2.4e-18 Score=145.36 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=64.4
Q ss_pred ccccccCCCCccEEEeccCCCCC-----------------CCCcccc--CCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092 64 ISYGFSQFRSLTILNLRHYNFRG-----------------SIPPSFC--NLTQLMHLDLSSNILSGHIPSSLSNLEQLRE 124 (179)
Q Consensus 64 ~~~~~~~l~~L~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 124 (179)
+|..+.++++|+.|++++|.+++ .+|+.++ .+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 34445666666666666666664 1556555 6666666666666666666666666666665
Q ss_pred ccccC-------CccccccCC-------CcccEEEcCCCccCCchhh--HhhcCCCCCcEEEccCCccc
Q 042092 125 KKLTC-------SISSCIFEL-------VNLTKVSLSSNNLSSNVEL--YMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 125 ~~l~~-------~~~~~~~~~-------~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~ 177 (179)
+.+.+ .+|..++.+ ++|++|++++|.+.. +|. .+.. +++|+.|++++|.++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~-L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQK-MVKLGLLDCVHNKVR 586 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTT-CTTCCEEECTTSCCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhc-CCCCCEEECCCCCcc
Confidence 44332 233333333 266666666666663 544 3333 666666666666554
No 74
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=7.1e-17 Score=114.11 Aligned_cols=128 Identities=28% Similarity=0.336 Sum_probs=99.0
Q ss_pred ceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc
Q 042092 14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC 93 (179)
Q Consensus 14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~ 93 (179)
-+.++++++.++ .+| ..+ .+.+++|++++|.++ ..+..+..+++|+.|++++|.++...+..|.
T Consensus 12 ~~~l~~~~~~l~-~ip-----------~~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLP-----------KGI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75 (193)
T ss_dssp TTEEECTTSCCS-SCC-----------SCC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEEEcCCCCCC-cCC-----------CCC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHcc
Confidence 367899999988 667 443 368999999999996 4567899999999999999999988788899
Q ss_pred CCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccC
Q 042092 94 NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSY 173 (179)
Q Consensus 94 ~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (179)
.+++|++|++++|.+.+..+..+.. +++|++|++++|.+.. ++...+..+++|+.|++++
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~-------------------l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDG-------------------LKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTT-------------------CTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCccCEeCHHHhCC-------------------CCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCC
Confidence 9999999999999998555544444 4566777777777776 4444344477777777777
Q ss_pred Cccc
Q 042092 174 NKLS 177 (179)
Q Consensus 174 n~l~ 177 (179)
|++.
T Consensus 136 N~~~ 139 (193)
T 2wfh_A 136 NPLY 139 (193)
T ss_dssp SCEE
T ss_pred CCee
Confidence 7664
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=2.5e-17 Score=134.23 Aligned_cols=131 Identities=26% Similarity=0.285 Sum_probs=110.7
Q ss_pred ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092 47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~ 126 (179)
..+++|++++|.|+ ...+..|.++++|++|++++|.++.+.+..|..+++|++|++++|++.+..+..|..+++|+++.
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46899999999998 56677899999999999999999977778899999999999999999866667889999999866
Q ss_pred ccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 127 LTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 127 l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+.+ ..+..++.+++|++|++++|.+.+......+..+++|++|++++|++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 553 3445688899999999999999873322334459999999999999875
No 76
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=6.7e-17 Score=116.42 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=114.1
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
..++.|++++|.+++..+. ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~----------~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT----------GIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp TTCSEEECCSSCCCEECCC----------CCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred CCCCEEEcCCCcCCccCch----------hhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 3578999999999865441 35788999999999999997 466668999999999999999999777778
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchh
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVE 156 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 156 (179)
|..+++|++|++++|.+.+..|..+..+++|+.+.+. +..|..+..+++|++|++++|.+....+
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999999999997878899999988885554 4557788889999999999999986443
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.1e-16 Score=119.98 Aligned_cols=125 Identities=26% Similarity=0.303 Sum_probs=65.2
Q ss_pred hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092 43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL 122 (179)
Q Consensus 43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L 122 (179)
+..+++|++|++++|.++ ..+ .+..+++|+.|++++|.+++. +.+..+++|++|++++|.+.+. ..+..+++|
T Consensus 86 l~~l~~L~~L~l~~n~l~--~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 158 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL 158 (291)
T ss_dssp GTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred cccCCCCCEEECCCCcCC--CCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence 455555555555555554 122 245555555555555555532 3445555666666666655532 345555555
Q ss_pred ccccccCCccc---cccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 123 REKKLTCSISS---CIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 123 ~~~~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+.+.+.+.... .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|+++
T Consensus 159 ~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l~~--l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 159 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEEEEEEEEE
T ss_pred CEEEccCCccccchhhcCCCccCEEECCCCcCCC-Chh--hccCCCCCEEECcCCccc
Confidence 55444321110 14555666666666666665 332 233666666666666654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=124.87 Aligned_cols=155 Identities=17% Similarity=0.089 Sum_probs=100.1
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccch--hccccceEEEeeCccccCCccc----ccccCCCCccEEEeccCCC
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESL--FFILHSQNLNLCGNDFNYSKIS----YGFSQFRSLTILNLRHYNF 84 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~l~~~~l 84 (179)
.++|+.|++++|.+.+..| ..+ ..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~-----------~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMP-----------PLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp HSCCCEEEEESCCCBSCCC-----------CCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred cCceeEEEeeCCEeccchh-----------hhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 3568999999999988777 566 778888888888888863 222 2344688888888888888
Q ss_pred CCCCCccccCCCCccEEEcCCCccCCC--C--CCcCCCCcccccccccCCccc--------cccCCCcccEEEcCCCccC
Q 042092 85 RGSIPPSFCNLTQLMHLDLSSNILSGH--I--PSSLSNLEQLREKKLTCSISS--------CIFELVNLTKVSLSSNNLS 152 (179)
Q Consensus 85 ~~~~~~~l~~l~~L~~l~l~~n~l~~~--~--~~~~~~l~~L~~~~l~~~~~~--------~~~~~~~L~~L~l~~n~~~ 152 (179)
....+..+..+++|++|++++|.+.+. + +..+..+++|+.+.+.+.... .+..+++|++|++++|.+.
T Consensus 158 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 158 PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 877777888888888888888886531 1 222345666666555442221 1234456666666666666
Q ss_pred CchhhHhhcC--CCCCcEEEccCCccc
Q 042092 153 SNVELYMFTK--LKSLEVLDLSYNKLS 177 (179)
Q Consensus 153 ~~~~~~~~~~--l~~L~~L~l~~n~l~ 177 (179)
+..|..+... +++|++|++++|.++
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred ccchhhHHhccCcCcCCEEECCCCCCC
Confidence 5434333321 145556666555554
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=127.76 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=91.3
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCc-c--cccccCCCCccEEEeccCCCCCC
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSK-I--SYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~--~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
.++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+.. . ...+..+++|++|++++|.++ .
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 211 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC-----------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-T 211 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT-----------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-C
T ss_pred ccCCCEEEeeCCCcchhhH-----------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-c
Confidence 4455555555555544444 45555666666666666543100 1 111245566666666666654 2
Q ss_pred CCc----cccCCCCccEEEcCCCccCCCCCCcCCCC---cccccccccC----CccccccCCCcccEEEcCCCccCCchh
Q 042092 88 IPP----SFCNLTQLMHLDLSSNILSGHIPSSLSNL---EQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVE 156 (179)
Q Consensus 88 ~~~----~l~~l~~L~~l~l~~n~l~~~~~~~~~~l---~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~ 156 (179)
.+. .+..+++|++|++++|.+.+..|..+..+ ++|+.+++++ .+|..+. ++|++|++++|.+++ +|
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~ 288 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-AP 288 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cc
Confidence 222 13456788888888888876667666655 4677655554 3344332 678888888888887 33
Q ss_pred hHhhcCCCCCcEEEccCCccccC
Q 042092 157 LYMFTKLKSLEVLDLSYNKLSLC 179 (179)
Q Consensus 157 ~~~~~~l~~L~~L~l~~n~l~~~ 179 (179)
. ...+++|+.|++++|+++.+
T Consensus 289 ~--~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 289 Q--PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp C--TTSCCCCSCEECSSTTTSCC
T ss_pred h--hhhCCCccEEECcCCCCCCC
Confidence 2 34478888888888888753
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.2e-16 Score=119.75 Aligned_cols=147 Identities=24% Similarity=0.288 Sum_probs=121.4
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI 88 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 88 (179)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.++ . .+. +..+++|++|++++|.+++ .
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~------------~~~~l~~L~~L~L~~n~l~-~-~~~-l~~l~~L~~L~l~~n~l~~-~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLT-D-IKP-LANLKNLGWLFLDENKVKD-L 105 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCC-C-CGG-GTTCTTCCEEECCSSCCCC-G
T ss_pred hhcCcccEEEccCCCcc-cCh------------hHhcCCCCCEEEccCCccC-C-Ccc-cccCCCCCEEECCCCcCCC-C
Confidence 45688999999999988 455 4888999999999999997 3 333 8899999999999999985 3
Q ss_pred CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
+.+..+++|++|++++|.+.+. +.+..+++|+.+.+.+... ..+..+++|++|++++|.+.+..+ +..+++
T Consensus 106 -~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 106 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTK 179 (291)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTT
T ss_pred -hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh---hcCCCc
Confidence 3488999999999999999843 4677888888877765322 456788999999999999998444 445999
Q ss_pred CcEEEccCCcccc
Q 042092 166 LEVLDLSYNKLSL 178 (179)
Q Consensus 166 L~~L~l~~n~l~~ 178 (179)
|+.|++++|.+++
T Consensus 180 L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 180 LQNLYLSKNHISD 192 (291)
T ss_dssp CCEEECCSSCCCB
T ss_pred cCEEECCCCcCCC
Confidence 9999999999875
No 81
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.4e-16 Score=110.86 Aligned_cols=131 Identities=25% Similarity=0.246 Sum_probs=95.1
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF 92 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l 92 (179)
..+.++++++.++ .+| ..+ .+.+++|++++|.++ ...+..+..+++|++|++++|.++...+..+
T Consensus 8 ~~~~l~~~~~~l~-~~p-----------~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVP-----------TGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72 (177)
T ss_dssp ETTEEECCSSCCS-SCC-----------TTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCEEEecCCCCc-cCC-----------CCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence 4578899999887 555 333 368999999999997 4556667899999999999999997666678
Q ss_pred cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEcc
Q 042092 93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLS 172 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 172 (179)
..+++|+++++++|.+.+..+..+..+ ++|++|++++|.+.+ ++...+..+++|++|+++
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l-------------------~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKL-------------------TQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTC-------------------TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECC
T ss_pred cCCCccCEEECCCCCccccCHHHhhCC-------------------cccCEEECcCCcceE-eCHHHhcCCcccCEEEec
Confidence 899999999999999885444444444 456666666666665 433333446666666666
Q ss_pred CCcccc
Q 042092 173 YNKLSL 178 (179)
Q Consensus 173 ~n~l~~ 178 (179)
+|++++
T Consensus 133 ~N~~~~ 138 (177)
T 2o6r_A 133 TNPWDC 138 (177)
T ss_dssp SSCBCC
T ss_pred CCCeec
Confidence 666554
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.3e-16 Score=120.42 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=121.8
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
+..+++|+.|++++|.+++ ++ .+..+++|++|++++|.+++ .+. +..+++|+.|++++|.+++.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~------------~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~ 144 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS------------AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNI 144 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG------------GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred HccCCCCCEEEccCCcCCC-ch------------hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcC
Confidence 5567899999999999884 44 68889999999999999972 333 88999999999999999855
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccc---cccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISS---CIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 164 (179)
+. +..+++|++|++++|.+.+ ++. +..+++|+.+.+.+.... .+..+++|++|++++|.+.+..+ +..++
T Consensus 145 -~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~ 217 (308)
T 1h6u_A 145 -SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTS 217 (308)
T ss_dssp -GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---GTTCT
T ss_pred -cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc---ccCCC
Confidence 33 8899999999999999984 343 888888888776653222 26778999999999999998443 45599
Q ss_pred CCcEEEccCCcccc
Q 042092 165 SLEVLDLSYNKLSL 178 (179)
Q Consensus 165 ~L~~L~l~~n~l~~ 178 (179)
+|+.|++++|++++
T Consensus 218 ~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 218 NLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEEEEEEEEEC
T ss_pred CCCEEEccCCeeec
Confidence 99999999999876
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=6.6e-18 Score=142.67 Aligned_cols=153 Identities=17% Similarity=0.172 Sum_probs=74.4
Q ss_pred hhcccCceeeecccccCCCC-----------------CCcchhhhheecccchh--ccccceEEEeeCccccCCcccccc
Q 042092 8 CARNCAFMNRLLHYSCLSNS-----------------FPSRKKLLIFALNESLF--FILHSQNLNLCGNDFNYSKISYGF 68 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~-----------------~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~ 68 (179)
+..+++|+.|++++|.+++. +| ..+. .+++|++|++++|.+. ...|..+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-----------~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l 511 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-----------EELSWSNLKDLTDVELYNCPNM-TQLPDFL 511 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-----------SCCCGGGCTTCCEEEEESCTTC-CSCCGGG
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-----------hhhhhccCCCCCEEECcCCCCC-ccChHHH
Confidence 44566777777777777652 45 4444 5666666666666554 2445555
Q ss_pred cCCCCccEEEeccCC-CCC-CCCccccCC-------CCccEEEcCCCccCCCCCC--cCCCCcccccccccC----Cccc
Q 042092 69 SQFRSLTILNLRHYN-FRG-SIPPSFCNL-------TQLMHLDLSSNILSGHIPS--SLSNLEQLREKKLTC----SISS 133 (179)
Q Consensus 69 ~~l~~L~~L~l~~~~-l~~-~~~~~l~~l-------~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~~~l~~----~~~~ 133 (179)
.++++|+.|++++|. +++ .+|..++.+ ++|++|++++|.+. .+|. .+..+++|+.+.+.+ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp- 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE- 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-
Confidence 555555555555555 443 334333222 25555555555554 4444 444444444433221 222
Q ss_pred cccCCCcccEEEcCCCccCCchhhHhhcCCCC-CcEEEccCCcc
Q 042092 134 CIFELVNLTKVSLSSNNLSSNVELYMFTKLKS-LEVLDLSYNKL 176 (179)
Q Consensus 134 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l 176 (179)
.+..+++|+.|++++|.+.. +|..+.. +++ |+.|++++|.+
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~-lp~~l~~-l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEE-IPEDFCA-FTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCCTTSEESEEECCSSCCSC-CCTTSCE-ECTTCCEEECCSSCC
T ss_pred hhcCCCcceEEECcCCcccc-chHHHhh-ccccCCEEECcCCCC
Confidence 33444444444444444442 3333222 333 44444444433
No 84
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=2.6e-17 Score=111.42 Aligned_cols=131 Identities=17% Similarity=0.111 Sum_probs=104.8
Q ss_pred ccCceeeecccccCC-CCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 11 NCAFMNRLLHYSCLS-NSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
.++++.|++++|.++ +.+| ..+..+++|++|++++|.+++ . ..+..+++|++|++++|.+++..|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE-----------GLTDEFEELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC-----------SCCTTCTTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCcCChhHHH-----------HHHhhcCCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchHH
Confidence 478899999999998 6777 677889999999999999973 3 667889999999999999987677
Q ss_pred ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchh--hHhhcCCCCCc
Q 042092 90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE--LYMFTKLKSLE 167 (179)
Q Consensus 90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~ 167 (179)
..+..+++|+++++++|.+.+. + .+..+..+++|++|++++|.+.+..+ ...+..+++|+
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~-~-----------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDL-S-----------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSH-H-----------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred HHhhhCCCCCEEECCCCcCCCh-H-----------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 7777789999999999988732 1 12345566789999999999988443 13445599999
Q ss_pred EEEccC
Q 042092 168 VLDLSY 173 (179)
Q Consensus 168 ~L~l~~ 173 (179)
.|++++
T Consensus 144 ~L~l~d 149 (149)
T 2je0_A 144 YLDGYD 149 (149)
T ss_dssp EETTBC
T ss_pred cccCCC
Confidence 999864
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1.3e-17 Score=126.20 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=58.6
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP 89 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 89 (179)
..++|+.|++++|.+++..+ ..+..+++|++|++++|.++ ...+ +..+++|++|++++|.+++. +
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~l-~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISA-----------ADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQEL-L 96 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCH-----------HHHTTCTTCCEEECTTSCCE-EEEE--ETTCTTCCEEECCSSEEEEE-E
T ss_pred cCCCCCEEECcCCccCcCCH-----------HHhhCCCcCCEEECCCCcCC-cchh--hhhcCCCCEEECcCCccccc-c
Confidence 35689999999999987666 67888999999999999886 2222 78888888888888887632 1
Q ss_pred ccccCCCCccEEEcCCCccC
Q 042092 90 PSFCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 90 ~~l~~l~~L~~l~l~~n~l~ 109 (179)
..++|+++++++|.+.
T Consensus 97 ----~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 97 ----VGPSIETLHAANNNIS 112 (317)
T ss_dssp ----ECTTCCEEECCSSCCS
T ss_pred ----CCCCcCEEECCCCccC
Confidence 2245555555555544
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-16 Score=117.07 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=114.9
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
...+++|+.|++++|.++ .++ .+..+++|++|++++|.++ . .+. +..+++|+.|++++|.+++.
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~L~~N~i~-~-~~~-l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA------------GMQFFTNLKELHLSHNQIS-D-LSP-LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCC-C-CGG-GTTCSSCCEEECCSSCCSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch------------HHhhCCCCCEEECCCCccC-C-Chh-hccCCCCCEEECCCCccCCc
Confidence 455688899999999887 455 5788999999999999997 3 333 88999999999999998853
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 164 (179)
+.. .. ++|++|++++|.+.+ + +.+..+++|+.+.+.++.. ..+..+++|++|++++|.+.+. .. +..++
T Consensus 101 -~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~ 172 (263)
T 1xeu_A 101 -NGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GG-LTRLK 172 (263)
T ss_dssp -TTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TT-STTCC
T ss_pred -Ccc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HH-hccCC
Confidence 433 23 889999999999984 3 3578888888866664322 2567788999999999999884 33 44599
Q ss_pred CCcEEEccCCcccc
Q 042092 165 SLEVLDLSYNKLSL 178 (179)
Q Consensus 165 ~L~~L~l~~n~l~~ 178 (179)
+|+.|++++|++++
T Consensus 173 ~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 173 KVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCEEEEEEEEEEC
T ss_pred CCCEEeCCCCcccC
Confidence 99999999998865
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.9e-17 Score=130.43 Aligned_cols=155 Identities=17% Similarity=0.074 Sum_probs=72.6
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccc----------------ccccC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKIS----------------YGFSQ 70 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----------------~~~~~ 70 (179)
.+..+++|+.|++++|.+++..| +..+++|++|++++|.+++ ..+ .....
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~-------------l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~L~L~~N~l~~~~~~~ 118 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSR 118 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE-------------CTTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCCCEEECC
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc-------------cccCCCCCEEEecCCcCCC-CCCCCCcCEEECcCCcCCCCCccc
Confidence 44566778888888887764322 4444444444444444431 000 00122
Q ss_pred CCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCC-CCcccccccccCCccc---cccCCCcccEEEc
Q 042092 71 FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLS-NLEQLREKKLTCSISS---CIFELVNLTKVSL 146 (179)
Q Consensus 71 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~~~l~~~~~~---~~~~~~~L~~L~l 146 (179)
+++|+.|++++|.+++..|..++.+++|++|++++|.+.+..|..+. .+++|+.++++++... ....+++|++|++
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence 34555555555555544455555555566666666655544444443 3444444333322111 1112344444444
Q ss_pred CCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 147 SSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 147 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
++|.+++ +|..+.. +++|+.|++++|.++
T Consensus 199 s~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 199 SSNKLAF-MGPEFQS-AAGVTWISLRNNKLV 227 (487)
T ss_dssp CSSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred CCCCCCC-CCHhHcC-CCCccEEEecCCcCc
Confidence 4444444 2222222 444444444444443
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=129.33 Aligned_cols=130 Identities=20% Similarity=0.245 Sum_probs=92.0
Q ss_pred hccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC--CCCccccCCCCccEEEcCCCccCCCCCC-cCCCCc
Q 042092 44 FFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG--SIPPSFCNLTQLMHLDLSSNILSGHIPS-SLSNLE 120 (179)
Q Consensus 44 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~l~l~~n~l~~~~~~-~~~~l~ 120 (179)
..++.|++|++++|.++ ...+..+..+++|++|++++|.+++ ..|..+..+++|+++++++|.+.+.+|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 45667777777777776 3455667777778888888777764 3345567777888888888877754554 366667
Q ss_pred ccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 121 QLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 121 ~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+|+.+++.+. .+..+. ++|++|++++|.++. +|..++. +++|++|++++|+++.
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~-l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVK-LEALQELNVASNQLKS 458 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGG-CTTCCEEECCSSCCCC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhc-CCCCCEEECCCCcCCc
Confidence 7776555543 222222 689999999999986 7777774 9999999999998864
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=4.1e-16 Score=118.99 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=74.2
Q ss_pred hhcccCceeeecccccCCCCCCcch--hhh---------heecccchhccccceEEEeeCccccCCcccccccCCCCccE
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRK--KLL---------IFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTI 76 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~--~~~---------~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~ 76 (179)
....++|+.|++++|.+.+ ++... +.+ +... ..+..+++|++|++++|.++ . .+. +..+++|+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~ 247 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKIT-D-LSP-LANLSQLTW 247 (347)
T ss_dssp GGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC-C-CGG-GTTCTTCCE
T ss_pred hccCCCCCEEEccCCcccc-cccccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccC-C-Ccc-hhcCCCCCE
Confidence 3456677778888777763 33000 000 0000 01444455555555555554 1 121 445555555
Q ss_pred EEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCcc
Q 042092 77 LNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNL 151 (179)
Q Consensus 77 L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~ 151 (179)
|++++|.++.. +.+..+++|+++++++|.+.+. +.+..+++|+.+.+.+ ..+..+..+++|++|++++|.+
T Consensus 248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 55555555432 3344555555555555555422 2344444454433332 2233344555566666666665
Q ss_pred CCchhhHhhcCCCCCcEEEccCCccc
Q 042092 152 SSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 152 ~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
++..| + ..+++|+.|++++|+|+
T Consensus 324 ~~~~~--~-~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDIRP--L-ASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGG--G-GGCTTCSEESSSCC---
T ss_pred ccccC--h-hhhhccceeehhhhccc
Confidence 55333 2 22556666666666553
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=1e-15 Score=116.80 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=102.5
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCC--------------------ccccc
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS--------------------KISYG 67 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--------------------~~~~~ 67 (179)
+...++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+. ..+.
T Consensus 151 ~~~l~~L~~L~l~~~~~~~-~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKD-VT------------PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG------------GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred hhhCCCCcEEEecCCCcCC-ch------------hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-
Confidence 4567899999999999874 33 244555555555555554310 1111
Q ss_pred ccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEE
Q 042092 68 FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKV 144 (179)
Q Consensus 68 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L 144 (179)
+..+++|+.|++++|.+++. +. +..+++|+++++++|.+.+. +.+..+++|+.+.+.+... ..+..+++|++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL 292 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEE
Confidence 55667777777777777643 33 66777777777777777632 4566777777766654322 345677889999
Q ss_pred EcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 145 SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 145 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
++++|.+.+..+..+.. +++|+.|++++|++++
T Consensus 293 ~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITD 325 (347)
T ss_dssp ECCSSCCCGGGHHHHHT-CTTCSEEECCSSSCCC
T ss_pred ECcCCcCCCcChhHhhc-cccCCEEEccCCcccc
Confidence 99999998855555544 9999999999998875
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=132.87 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=121.5
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+.+..+ ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.+++..+..
T Consensus 266 ~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNS-----------RVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp SCCCEEECTTCCCCEECS-----------CCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCccEEECCCCcccccCh-----------hhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 679999999999987767 77888999999999999997 466778899999999999999998788888
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCccc--------------------EEEcCCCcc
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLT--------------------KVSLSSNNL 151 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~--------------------~L~l~~n~~ 151 (179)
+..+++|+++++++|.+....+..+..+++|+.+.+.++....+..+++|+ .+++++|.+
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 999999999999999998676778888888888777655444443344444 455555555
Q ss_pred CCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 152 SSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 152 ~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
.+.........+++|+.|++++|++++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred ccCchhhhhhcCCccceeeCCCCcccc
Confidence 542222333458999999999998874
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=5.7e-16 Score=126.58 Aligned_cols=147 Identities=24% Similarity=0.256 Sum_probs=94.3
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
+..+++|+.|++++|.+.+ ++ . +..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+.+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~-~~-----------~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTD-IK-----------P-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCCC-CG-----------G-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCC
T ss_pred HccCCCCCEEEeeCCCCCC-Ch-----------h-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCC
Confidence 3445666666666666653 33 2 6667777777777777752 22 466777777777777777642
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL 163 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 163 (179)
+.+..+++|+.|++++|.+.+. ..+..+++|+.+.+.++ .+. +..+++|+.|++++|.+.+ ++ . +..+
T Consensus 125 --~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~-l~~l 196 (605)
T 1m9s_A 125 --NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-A-LAGL 196 (605)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-G-GTTC
T ss_pred --ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch-H-HccC
Confidence 3466777777777777777633 45666666666555432 111 6667778888888887776 33 2 3347
Q ss_pred CCCcEEEccCCcccc
Q 042092 164 KSLEVLDLSYNKLSL 178 (179)
Q Consensus 164 ~~L~~L~l~~n~l~~ 178 (179)
++|+.|++++|++++
T Consensus 197 ~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 197 KNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSEEEEC
T ss_pred CCCCEEEccCCcCcC
Confidence 788888888877764
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=9.5e-17 Score=121.48 Aligned_cols=127 Identities=18% Similarity=0.152 Sum_probs=94.7
Q ss_pred cccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc-CCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092 46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC-NLTQLMHLDLSSNILSGHIPSSLSNLEQLRE 124 (179)
Q Consensus 46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 124 (179)
+++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+. +. ...+++|+.
T Consensus 119 ~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~ 195 (317)
T 3o53_A 119 GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKT 195 (317)
T ss_dssp CSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCE
T ss_pred cCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCE
Confidence 567888888888887 45566677888888888888888866666653 678888888888888743 33 234667777
Q ss_pred ccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 125 KKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 125 ~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+.+++ .++..+..+++|++|++++|.+.+ +|..+. .+++|+.|++++|+++
T Consensus 196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALR-FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCC-CCTTCCEEECTTCCCB
T ss_pred EECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhh-cCCCCCEEEccCCCcc
Confidence 65554 244457778889999999999986 666544 4889999999999886
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=6.1e-16 Score=126.41 Aligned_cols=148 Identities=24% Similarity=0.284 Sum_probs=122.8
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
...+.+|+.|++++|.+. .++ .+..+++|+.|++++|.++ .. +. +..+++|+.|++++|.+.+
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~- 101 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLT-DI-KP-LTNLKNLGWLFLDENKIKD- 101 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT------------TGGGCTTCCEEECTTSCCC-CC-GG-GGGCTTCCEEECCSSCCCC-
T ss_pred hhcCCCCCEEECcCCCCC-CCh------------HHccCCCCCEEEeeCCCCC-CC-hh-hccCCCCCEEECcCCCCCC-
Confidence 455788999999999987 455 5889999999999999997 33 33 8899999999999999984
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 164 (179)
++ .+..+++|++|++++|.+.+ + +.+..+++|+.+.+.+... ..+..+++|+.|++++|.+.+..+ +..++
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~ 175 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLT 175 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCT
T ss_pred Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCC
Confidence 33 68899999999999999984 3 4588888898877765322 457788999999999999998555 44599
Q ss_pred CCcEEEccCCcccc
Q 042092 165 SLEVLDLSYNKLSL 178 (179)
Q Consensus 165 ~L~~L~l~~n~l~~ 178 (179)
+|+.|++++|+|++
T Consensus 176 ~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 176 KLQNLYLSKNHISD 189 (605)
T ss_dssp TCCEEECCSSCCCB
T ss_pred CCCEEECcCCCCCC
Confidence 99999999999875
No 95
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.2e-16 Score=111.14 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=101.7
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccc-cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFIL-HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
+.....++.|++++|.++ .++ . +..+. +|++|++++|.++ . . ..+..+++|++|++++|.++.
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~-----------~-~~~~~~~L~~L~Ls~N~l~-~-~-~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIE-----------N-LGATLDQFDAIDFSDNEIR-K-L-DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCC-----------C-GGGGTTCCSEEECCSSCCC-E-E-CCCCCCSSCCEEECCSSCCCE
T ss_pred cCCcCCceEEEeeCCCCc-hhH-----------H-hhhcCCCCCEEECCCCCCC-c-c-cccccCCCCCEEECCCCcccc
Confidence 445678899999999988 456 3 55554 8999999999997 2 3 568889999999999999985
Q ss_pred CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhH---hhcCC
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELY---MFTKL 163 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~l 163 (179)
..+..+..+++|+++++++|.+. .+|. ...+..+++|++|++++|.+.. .+.. .+..+
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i~-~~~~-----------------~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l 139 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSLV-ELGD-----------------LDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKV 139 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCCC-CGGG-----------------GGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHC
T ss_pred cCcchhhcCCCCCEEECCCCcCC-cchh-----------------hHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHC
Confidence 54444588999999999999886 3332 0134456788999999999886 5543 34448
Q ss_pred CCCcEEEccCCccc
Q 042092 164 KSLEVLDLSYNKLS 177 (179)
Q Consensus 164 ~~L~~L~l~~n~l~ 177 (179)
++|+.||++.|.+.
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 99999999888653
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=4.4e-16 Score=126.12 Aligned_cols=147 Identities=21% Similarity=0.153 Sum_probs=116.6
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
|......+.+|+++|.++ .+| ..+. +++++|++++|.++ ...+..|.++++|++|++++|.+++.
T Consensus 27 ~~~~~~~~~l~ls~~~L~-~ip-----------~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 91 (562)
T 3a79_B 27 PFSNELESMVDYSNRNLT-HVP-----------KDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSL 91 (562)
T ss_dssp ------CCEEECTTSCCC-SCC-----------TTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEE
T ss_pred ccccCCCcEEEcCCCCCc-cCC-----------CCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcC
Confidence 433344488999999998 577 4443 78999999999998 56677899999999999999999988
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhc
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFT 161 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 161 (179)
.|..|..+++|++|++++|.+. .+|.. .+++|+++++.+ ..|..++.+++|++|++++|.+.+... .
T Consensus 92 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~ 164 (562)
T 3a79_B 92 DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----L 164 (562)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----G
T ss_pred CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----h
Confidence 8889999999999999999998 66665 678888866654 235678889999999999999987222 2
Q ss_pred CCCCC--cEEEccCCcc
Q 042092 162 KLKSL--EVLDLSYNKL 176 (179)
Q Consensus 162 ~l~~L--~~L~l~~n~l 176 (179)
.+++| +.|++++|.+
T Consensus 165 ~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSY 181 (562)
T ss_dssp GGTTSCEEEEEEEESSC
T ss_pred hhhhceeeEEEeecccc
Confidence 25555 9999999987
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=9.5e-16 Score=121.61 Aligned_cols=126 Identities=25% Similarity=0.275 Sum_probs=73.2
Q ss_pred hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092 43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL 122 (179)
Q Consensus 43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L 122 (179)
+..+++|++|++++|.++ . .+. +..+++|+.|++++|.+.+..+ +..+++|+++++++|.+.+..| +..+++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQIS-N-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCccC-c-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 445555566666666554 1 222 4556666666666666553322 5556666666666666654333 4555556
Q ss_pred ccccccCCc---cccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 123 REKKLTCSI---SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 123 ~~~~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+.+.+.+.. ...+..+++|++|++++|.+.+..| ...+++|+.|++++|++++
T Consensus 334 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCchhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 554444321 1345566777777777777777444 3347777777777777765
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=2.5e-17 Score=127.71 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=83.4
Q ss_pred ccceEEEeeCccccCCccc---ccccCCCCccEEEeccCCCCC-----CCCccccCCCCccEEEcCCCccC----CCCCC
Q 042092 47 LHSQNLNLCGNDFNYSKIS---YGFSQFRSLTILNLRHYNFRG-----SIPPSFCNLTQLMHLDLSSNILS----GHIPS 114 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l~~~~l~~-----~~~~~l~~l~~L~~l~l~~n~l~----~~~~~ 114 (179)
+.|++|++++|.++....+ ..+..+++|+.|++++|.++. ..+..+..+++|++|++++|.+. ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 5666666666666422233 344566677777777776652 12225666777777777777764 34566
Q ss_pred cCCCCcccccccccCCc---------cccc--cCCCcccEEEcCCCccCC----chhhHhhcCCCCCcEEEccCCcccc
Q 042092 115 SLSNLEQLREKKLTCSI---------SSCI--FELVNLTKVSLSSNNLSS----NVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 115 ~~~~l~~L~~~~l~~~~---------~~~~--~~~~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
.+..+++|+.+.++++. +..+ +.+++|++|++++|.+.+ .++..+...+++|+.|++++|++++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 66667777776655432 2333 236778888888888876 3555554447888888888888775
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=6.9e-16 Score=113.99 Aligned_cols=144 Identities=25% Similarity=0.297 Sum_probs=115.3
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
+..++.++++++.+++ ++ .+..+++|++|++++|.++ ..+ .+..+++|+.|++++|.+++. ++
T Consensus 18 l~~l~~l~l~~~~i~~-~~------------~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L~~N~i~~~-~~ 80 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV------------SQKELSGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHLSHNQISDL-SP 80 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE------------CHHHHTTCSEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCC-GG
T ss_pred HHHHHHHHhcCCCccc-cc------------chhhcCcCcEEECcCCCcc--cch-HHhhCCCCCEEECCCCccCCC-hh
Confidence 5567788999988873 33 4788999999999999997 344 588999999999999999955 44
Q ss_pred cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc---cccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI---SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 167 (179)
+..+++|++|++++|.+.+ ++.... ++|+.+.+.+.. ...+..+++|++|++++|.+++ ++ .+ ..+++|+
T Consensus 81 -l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~-~l-~~l~~L~ 153 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-IV-ML-GFLSKLE 153 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-CG-GG-GGCTTCC
T ss_pred -hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-Ch-HH-ccCCCCC
Confidence 8899999999999999984 444332 677776665432 2357788999999999999998 44 34 4499999
Q ss_pred EEEccCCcccc
Q 042092 168 VLDLSYNKLSL 178 (179)
Q Consensus 168 ~L~l~~n~l~~ 178 (179)
.|++++|++++
T Consensus 154 ~L~L~~N~i~~ 164 (263)
T 1xeu_A 154 VLDLHGNEITN 164 (263)
T ss_dssp EEECTTSCCCB
T ss_pred EEECCCCcCcc
Confidence 99999999976
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2.3e-15 Score=106.41 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=108.1
Q ss_pred chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ 121 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~ 121 (179)
....++++++|++++|.++ ..+ .+..+++|++|++++|.+. . ++.+..+++|+++++++|.+.+..+..+..+++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred ChhhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 3477899999999999997 344 5889999999999999765 3 357889999999999999998778888999999
Q ss_pred cccccccC-----CccccccCCCcccEEEcCCCc-cCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 122 LREKKLTC-----SISSCIFELVNLTKVSLSSNN-LSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 122 L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
|+.+.+.+ ..+..+..+++|++|++++|. +.+ ++ . +..+++|+.|++++|.+++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~-l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-P-LKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-G-GGGCSSCCEEECTTBCCCC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-h-hcCCCCCCEEECCCCCCcC
Confidence 99866654 346668889999999999998 666 55 3 4459999999999999875
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=9.9e-15 Score=115.75 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=21.0
Q ss_pred ccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 135 IFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 135 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+..+++|++|++++|.+.+ ++ . +..+++|+.|++++|++++
T Consensus 327 ~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSD-VS-S-LANLTNINWLSAGHNQISD 367 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCB
T ss_pred hccCccCCEeECCCCccCC-ch-h-hccCCCCCEEeCCCCccCc
Confidence 3444555555555555554 22 1 2235566666666665554
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=3.6e-17 Score=124.30 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=83.1
Q ss_pred cCceeeecccccCCCC-CCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC-CCCCC-C
Q 042092 12 CAFMNRLLHYSCLSNS-FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY-NFRGS-I 88 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~ 88 (179)
++|+.|++++|.+++. ++ ..+..+++|++|++++|.++ ...+..+..+++|++|++++| .+++. .
T Consensus 93 ~~L~~L~L~~~~l~~~~~~-----------~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLH-----------GILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp BCCCEEECTTCEECHHHHH-----------HHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred CCCCEEEccCCCcCHHHHH-----------HHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHHHH
Confidence 4455555555554432 33 44555666666666666654 234444556666666666666 44431 3
Q ss_pred CccccCCCCccEEEcCCC-ccCCC-CCCcCCCCc-ccccccccCC--------ccccccCCCcccEEEcCCCc-cCCchh
Q 042092 89 PPSFCNLTQLMHLDLSSN-ILSGH-IPSSLSNLE-QLREKKLTCS--------ISSCIFELVNLTKVSLSSNN-LSSNVE 156 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n-~l~~~-~~~~~~~l~-~L~~~~l~~~--------~~~~~~~~~~L~~L~l~~n~-~~~~~~ 156 (179)
+..+..+++|++|++++| .+.+. ++..+..++ +|+.+.+.+. ++..+..+++|++|++++|. +++..+
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 333455666666666666 55532 344455555 6666555442 12334456677777777776 554444
Q ss_pred hHhhcCCCCCcEEEccCC
Q 042092 157 LYMFTKLKSLEVLDLSYN 174 (179)
Q Consensus 157 ~~~~~~l~~L~~L~l~~n 174 (179)
..+.. +++|+.|++++|
T Consensus 241 ~~l~~-l~~L~~L~l~~~ 257 (336)
T 2ast_B 241 QEFFQ-LNYLQHLSLSRC 257 (336)
T ss_dssp GGGGG-CTTCCEEECTTC
T ss_pred HHHhC-CCCCCEeeCCCC
Confidence 44444 677777777776
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=5.6e-15 Score=104.17 Aligned_cols=112 Identities=24% Similarity=0.257 Sum_probs=92.7
Q ss_pred cCceeeecccccCCCCCCcchhhhheeccc-chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNE-SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 90 (179)
..++.|++++|.+++..+ . .+..+++|++|++++|.++ ...+..|.++++|++|++++|.+++..+.
T Consensus 29 ~~l~~L~l~~n~i~~~~~-----------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISS-----------DGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp TTCSEEECCSCCCCSBCC-----------SCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CCCCEEECCCCcCCccCC-----------ccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence 388999999999985544 3 3889999999999999998 56688899999999999999999988888
Q ss_pred cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCc
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN 154 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 154 (179)
.|..+++|++|++++|.+.+..|..+..++ +|++|++++|.+...
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------------------~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLN-------------------SLTSLNLASNPFNCN 141 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTSSTTCT-------------------TCCEEECTTCCBCCS
T ss_pred HhcCCCCCCEEECCCCcCCeeCHHHhhcCC-------------------CCCEEEeCCCCccCc
Confidence 899999999999999999876666665554 556666666666553
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=4.6e-17 Score=123.71 Aligned_cols=128 Identities=22% Similarity=0.216 Sum_probs=56.1
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCc-cccCCcccccccCCCCccEEEeccC-CCCCC-
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGN-DFNYSKISYGFSQFRSLTILNLRHY-NFRGS- 87 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~~-~l~~~- 87 (179)
.++|++|++++|.+++..+ ..+..+++|++|++++| .+++...+..+..+++|+.|++++| .+++.
T Consensus 117 ~~~L~~L~L~~~~l~~~~~-----------~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIV-----------NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp BCCCSEEECTTCBCCHHHH-----------HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CCCCCEEeCcCcccCHHHH-----------HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 4455555555555444334 34444555555555555 3431123333444555555555555 44421
Q ss_pred CCccccCCC-CccEEEcCCC--ccC-CCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCC
Q 042092 88 IPPSFCNLT-QLMHLDLSSN--ILS-GHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSN 149 (179)
Q Consensus 88 ~~~~l~~l~-~L~~l~l~~n--~l~-~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n 149 (179)
.+..+..++ +|++|++++| .++ ..++..+..+++|+.+.+.+ ..+..+..+++|++|++++|
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 233344444 5555555555 222 12233333444444433322 22333444455555555555
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=2.5e-15 Score=115.17 Aligned_cols=155 Identities=18% Similarity=0.075 Sum_probs=106.6
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccE-EEeccCCCCCCCCc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTI-LNLRHYNFRGSIPP 90 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~ 90 (179)
+.+++|++++|.++..-+ ..|..+++|++|++++|.+.+...+..|.+++++.. +.+..|++....|.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~-----------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK-----------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCSEEEEESCCCSEECT-----------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCEEEccCCcCCCcCH-----------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 468899999999984333 568899999999999999863344567888888765 56677888877788
Q ss_pred cccCCCCccEEEcCCCccCCCCCCcCCCCccccc--------------------------ccccC----CccccccCCCc
Q 042092 91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE--------------------------KKLTC----SISSCIFELVN 140 (179)
Q Consensus 91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~--------------------------~~l~~----~~~~~~~~~~~ 140 (179)
.|..+++|+++++++|.+....+..+....++.. +.+.+ .++.......+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 8889999999999999887433333322222221 11111 12223334456
Q ss_pred ccEEEcCC-CccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 141 LTKVSLSS-NNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 141 L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
|+++++.+ |.+.. +|...+..+++|++||+++|+++.
T Consensus 179 L~~l~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 179 LDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEEEECTTCTTCCC-CCTTTTTTEECCSEEECTTSCCCC
T ss_pred hhHHhhccCCcccC-CCHHHhccCcccchhhcCCCCcCc
Confidence 77777765 45554 666666668899999999998864
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.4e-14 Score=117.57 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=94.2
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
++|+.|++++|.+++ +| . +.. +|++|++++|.+++ ++. .+++|+.|++++|.+++ +|.
T Consensus 100 ~~L~~L~Ls~N~l~~-ip-----------~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~- 157 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LP-----------E-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LPE- 157 (571)
T ss_dssp TTCCEEECCSSCCSC-CC-----------C-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred CCCCEEEccCCCCCC-cc-----------h-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CCC-
Confidence 455555555555553 44 3 332 77888888887762 443 57788888888888874 454
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcc-------cEEEcCCCccCCchhhHhh
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNL-------TKVSLSSNNLSSNVELYMF 160 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~ 160 (179)
.+++|++|++++|.+.+ +|. +. ++|+.+++++ .+|. +.. +| +.|++++|.++. +|..++
T Consensus 158 --~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~ 227 (571)
T 3cvr_A 158 --LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENIL 227 (571)
T ss_dssp --CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCC-CCGGGG
T ss_pred --cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCccee-cCHHHh
Confidence 46788888999888874 666 54 6677755554 3344 332 67 999999999997 888788
Q ss_pred cCCCCCcEEEccCCcccc
Q 042092 161 TKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~ 178 (179)
. +++|+.|++++|+++|
T Consensus 228 ~-l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 228 S-LDPTCTIILEDNPLSS 244 (571)
T ss_dssp G-SCTTEEEECCSSSCCH
T ss_pred c-CCCCCEEEeeCCcCCC
Confidence 7 9999999999999976
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=2.4e-14 Score=113.46 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=81.4
Q ss_pred hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI 88 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 88 (179)
...++|+.|++++|.+++ +| .+..+++|++|++++|.+++ .+ +..+++|++|++++|.+++.
T Consensus 39 ~~l~~L~~L~Ls~n~l~~-~~------------~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITD-MT------------GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL- 100 (457)
T ss_dssp HHHTTCCEEECCSSCCCC-CT------------TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-
T ss_pred hHcCCCCEEEccCCCccc-Ch------------hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-
Confidence 345777788888887774 34 35566666666666666652 22 55566666666666665533
Q ss_pred CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc---------------------cccCC-cc--ccccCCCcccEE
Q 042092 89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK---------------------KLTCS-IS--SCIFELVNLTKV 144 (179)
Q Consensus 89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~---------------------~l~~~-~~--~~~~~~~~L~~L 144 (179)
+ ++.+++|+++++++|.+.+ ++ +..+++|+.+ .+.+. .. ..+..+++|++|
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence 2 5555566666666665553 22 4444444443 33221 00 024455667777
Q ss_pred EcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 145 SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 145 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
++++|.+++ ++ ...+++|+.|++++|.+++
T Consensus 176 ~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 176 DCSFNKITE-LD---VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECCSSCCCC-CC---CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccce-ec---cccCCCCCEEECcCCcCCe
Confidence 777777766 43 2336777777777777654
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1.7e-16 Score=122.98 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCCCccEEEcCCCccCC-----CCCCcCCCCcccccccccCC---------ccccccCCCcccEEEcCCCccCCch----
Q 042092 94 NLTQLMHLDLSSNILSG-----HIPSSLSNLEQLREKKLTCS---------ISSCIFELVNLTKVSLSSNNLSSNV---- 155 (179)
Q Consensus 94 ~l~~L~~l~l~~n~l~~-----~~~~~~~~l~~L~~~~l~~~---------~~~~~~~~~~L~~L~l~~n~~~~~~---- 155 (179)
.+++|++|++++|.+.. ..+..+..+++|+.+.+.++ ++..+..+++|++|++++|.+.+..
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 34455555555554431 11224444455554444321 2334445555666666666655431
Q ss_pred hhHhh-cCCCCCcEEEccCCccc
Q 042092 156 ELYMF-TKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 156 ~~~~~-~~l~~L~~L~l~~n~l~ 177 (179)
+..+. ..+++|+.|++++|.++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHhhccCCCeEEEECcCCcCC
Confidence 22110 12555666666666554
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=101.87 Aligned_cols=110 Identities=22% Similarity=0.241 Sum_probs=92.1
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.++ .+| ..+..+++|++|++++|.++ ...+..|.++++|+.|++++|.++...+..
T Consensus 31 ~~l~~L~L~~n~i~-~ip-----------~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVP-----------KELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSSCCC-SCC-----------GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCCCcCc-hhH-----------HHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHH
Confidence 57899999999998 778 78999999999999999998 566778999999999999999999888888
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 153 (179)
|..+++|++|++++|.+....+..+..+ ++|++|++++|.+..
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------------~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDL-------------------SALSHLAIGANPLYC 140 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTC-------------------TTCCEEECCSSCEEC
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcC-------------------ccccEEEeCCCCeec
Confidence 9999999999999999984444445444 456666666666644
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=3.4e-16 Score=130.39 Aligned_cols=115 Identities=24% Similarity=0.239 Sum_probs=84.6
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+..|+.|++++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 56777788888888888885 34544557888888888888888 77777888888888888888887 6787788777
Q ss_pred ccccccccC----CccccccCCCcccEEEcCCCccCCchhhHh
Q 042092 121 QLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYM 159 (179)
Q Consensus 121 ~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 159 (179)
+|+.+.+.+ .+|..++.+++|++|++++|.+.+.+|..+
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 777755543 456667778888888888888887555543
No 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=3.7e-14 Score=112.40 Aligned_cols=145 Identities=16% Similarity=0.165 Sum_probs=89.7
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
.+...++|+.|++++|.+++ ++ +..+++|++|++++|.+++ .+ +..+++|++|++++|.+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-~~-------------~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-LD-------------LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-CC-------------CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC
T ss_pred hhcccCCCCEEEccCCcCCe-Ec-------------cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe
Confidence 34556778888888887774 23 4445555555555555542 11 4455555555555555543
Q ss_pred CCCccccCCCCccEEEcCCCccCC---------------------CCCCcCCCCcccccccccCCccc--cccCCCcccE
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSG---------------------HIPSSLSNLEQLREKKLTCSISS--CIFELVNLTK 143 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~---------------------~~~~~~~~l~~L~~~~l~~~~~~--~~~~~~~L~~ 143 (179)
. + ++.+++|+++++++|.+.+ .+ .+..+++|+.+.+.+.... .+..+++|+.
T Consensus 121 l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~ 195 (457)
T 3bz5_A 121 L-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNR 195 (457)
T ss_dssp C-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCE
T ss_pred e-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCE
Confidence 2 2 4444455555555544432 22 3556667777655542211 2677899999
Q ss_pred EEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 144 VSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 144 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
|++++|.+++ ++ +..+++|+.|++++|++++
T Consensus 196 L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 196 LNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp EECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC
T ss_pred EECcCCcCCe-ec---cccCCCCCEEECcCCcccc
Confidence 9999999998 43 3459999999999999986
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.8e-14 Score=99.12 Aligned_cols=114 Identities=23% Similarity=0.177 Sum_probs=93.9
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+.++.|++++|.+++..+ ..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.++...+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPH-----------GVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp TTCSEEECCSSCCCCCCT-----------TTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEeCCCcccEeCH-----------HHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHH
Confidence 689999999999986555 56788999999999999997 456666889999999999999999777777
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchh
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE 156 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 156 (179)
+..+++|+++++++|.+.+..+..+ ..+++|++|++++|.+.+..+
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~-------------------~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIF-------------------DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTT-------------------TTCTTCCEEECCSSCBCCCHH
T ss_pred hhCCcccCEEECcCCcceEeCHHHh-------------------cCCcccCEEEecCCCeeccCc
Confidence 8899999999999999873322222 335678899999999988554
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.1e-14 Score=98.43 Aligned_cols=113 Identities=24% Similarity=0.244 Sum_probs=91.2
Q ss_pred ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092 45 FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE 124 (179)
Q Consensus 45 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 124 (179)
..+++++|++++|.+++...+..+..+++|+.|++++|.+++. ..+..+++|+++++++|.+.+.+|.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~---------- 82 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV---------- 82 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH----------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH----------
Confidence 3478999999999997335677788999999999999999865 7788999999999999998743333
Q ss_pred ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 125 KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 125 ~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
.+..+++|++|++++|.+.+......+..+++|++|++++|++++
T Consensus 83 ---------~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 83 ---------LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ---------HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ---------HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 233467899999999999983222334459999999999999876
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.1e-16 Score=130.07 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=67.2
Q ss_pred CccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCC
Q 042092 73 SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSS 148 (179)
Q Consensus 73 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~ 148 (179)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.+. .+|..+..+++|+.+.+++ .+| .++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 45667777777763 444 667777777777777776 6666677777766654443 234 566677777777777
Q ss_pred CccCCch-hhHhhcCCCCCcEEEccCCcccc
Q 042092 149 NNLSSNV-ELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 149 n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
|.+++.. |..+.. +++|+.|++++|++++
T Consensus 518 N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGG-CTTCCEEECTTSGGGG
T ss_pred CCCCCCCCcHHHhc-CCCCCEEEecCCcCCC
Confidence 7777743 555544 7777777777777765
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=8.7e-16 Score=118.20 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=18.6
Q ss_pred cccEEEcCCCccCCc----hhhHhhcCCCCCcEEEccCCcccc
Q 042092 140 NLTKVSLSSNNLSSN----VELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 140 ~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+|++|++++|.+.+. ++..+....++|++|++++|.+++
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 555555555555542 222222212355555555555543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=2.7e-14 Score=98.33 Aligned_cols=112 Identities=28% Similarity=0.263 Sum_probs=90.9
Q ss_pred cccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092 46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125 (179)
Q Consensus 46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~ 125 (179)
.+.+++|++++|.+++...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+.+|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~---------- 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML---------- 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH----------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH----------
Confidence 477999999999996335677788999999999999999865 77889999999999999987443332
Q ss_pred cccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 126 KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 126 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+..+++|++|++++|.+.+......+..+++|++|++++|++++
T Consensus 91 ---------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 91 ---------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp ---------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred ---------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 33457899999999999983322344559999999999999875
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=9.5e-15 Score=121.73 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=93.7
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccce-----EEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQ-----NLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~-----~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
+.++++++.+|.+.. .+ ..+.....|. .+++..|.+. ..+..+..++.|+.|++++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~-----------~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~- 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-AN-----------QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF- 237 (727)
T ss_dssp ---------------------------------------------------------------CCCCCCEEECTTSCCS-
T ss_pred CccceEEeeCCCCCc-ch-----------hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-
Confidence 567888888888764 33 2332222222 2333344442 34667889999999999999998
Q ss_pred CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 162 (179)
.+|..+..+++|++|++++|.+. .+|..+..+++|+.+.+.+ .+|..++.+++|++|++++|.+.. +|..+..
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~- 314 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGN- 314 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC-CCSSTTS-
T ss_pred CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc-cChhhhc-
Confidence 77877789999999999999999 8899999999999866653 568888999999999999999986 7776554
Q ss_pred CCCCcEEEccCCcccc
Q 042092 163 LKSLEVLDLSYNKLSL 178 (179)
Q Consensus 163 l~~L~~L~l~~n~l~~ 178 (179)
+++|+.|++++|+++|
T Consensus 315 l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTCCCEECTTSCCCS
T ss_pred CCCccEEeCCCCccCC
Confidence 9999999999999986
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=4.4e-14 Score=114.72 Aligned_cols=117 Identities=25% Similarity=0.330 Sum_probs=68.7
Q ss_pred ceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc
Q 042092 49 SQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT 128 (179)
Q Consensus 49 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~ 128 (179)
|+.|++++|.++ ..|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.++++
T Consensus 443 L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCC--CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 455555555554 1333 555555555555555555 445555555555555555555552 33 45555555443332
Q ss_pred -----CCc-cccccCCCcccEEEcCCCccCCchhh--HhhcCCCCCcEEEc
Q 042092 129 -----CSI-SSCIFELVNLTKVSLSSNNLSSNVEL--YMFTKLKSLEVLDL 171 (179)
Q Consensus 129 -----~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l 171 (179)
+.. |..++.+++|++|++++|.+++.++. .+...+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 222 56677788999999999999884432 23445899999874
No 119
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=9.3e-14 Score=96.07 Aligned_cols=109 Identities=26% Similarity=0.251 Sum_probs=87.9
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
+..+.+++++|.++ .+| ..+ .+.+++|++++|.++ ...+..|.++++|++|++++|+++...+..
T Consensus 9 C~~~~l~~s~n~l~-~ip-----------~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 73 (170)
T 3g39_A 9 CSGTTVDCSGKSLA-SVP-----------TGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73 (170)
T ss_dssp EETTEEECTTSCCS-SCC-----------SCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred cCCCEEEeCCCCcC-ccC-----------ccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhh
Confidence 45688999999998 577 444 378999999999998 566778999999999999999999777777
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCc
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN 154 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 154 (179)
|..+++|++|++++|.+.+..+..+.. +++|++|++++|.+...
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPRGAFDN-------------------LKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTT-------------------CTTCCEEECCSSCBCTT
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhcC-------------------CCCCCEEEeCCCCCCCC
Confidence 889999999999999998444444444 45677888888877653
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=2.7e-16 Score=111.32 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=118.4
Q ss_pred hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
......++.++++.+.+.+.+|. +..++..+..+++|++|++++|.+++ .+ .+..+++|++|++++|.++ .
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~ 84 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----IEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-K 84 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----CCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-S
T ss_pred HHhcccccCcchheeEeccccCc-----HhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-c
Confidence 34567888889999988877760 00011278899999999999999973 55 7889999999999999998 6
Q ss_pred CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc----c--ccccCCCcccEEEcCCCccCCchhh----
Q 042092 88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI----S--SCIFELVNLTKVSLSSNNLSSNVEL---- 157 (179)
Q Consensus 88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~----~--~~~~~~~~L~~L~l~~n~~~~~~~~---- 157 (179)
+|..+..+++|++|++++|.+.+ +| .+..+++|+.+.+.++. + ..+..+++|++|++++|.+.+.+|.
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 67777778999999999999984 44 57777778776665421 2 3567788999999999998774432
Q ss_pred -----HhhcCCCCCcEEEccCCcccc
Q 042092 158 -----YMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 158 -----~~~~~l~~L~~L~l~~n~l~~ 178 (179)
..+..+++|+.|| ++.++.
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHHHHhCCCcEEEC--CcccCH
Confidence 2344488999887 666543
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=9.9e-14 Score=95.93 Aligned_cols=107 Identities=28% Similarity=0.321 Sum_probs=86.9
Q ss_pred cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092 48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127 (179)
Q Consensus 48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l 127 (179)
..+.+++++|.++ .+|..+ .++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+
T Consensus 10 ~~~~l~~s~n~l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f----------- 74 (170)
T 3g39_A 10 SGTTVDCSGKSLA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF----------- 74 (170)
T ss_dssp ETTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-----------
T ss_pred CCCEEEeCCCCcC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc-----------
Confidence 3578999999996 355444 3889999999999998888889999999999999999984433333
Q ss_pred cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 128 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
..+++|++|++++|.+++ ++...+..+++|+.|++++|+++.
T Consensus 75 --------~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 75 --------DKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp --------TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred --------cCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence 345689999999999998 555445559999999999999864
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1.9e-13 Score=94.87 Aligned_cols=107 Identities=24% Similarity=0.208 Sum_probs=85.0
Q ss_pred CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092 13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF 92 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l 92 (179)
.-+.+++++|.++ .+| ..+. +.+++|++++|.++ ...+..|.++++|++|++++|.++...+..|
T Consensus 13 ~~~~l~~~~n~l~-~iP-----------~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 77 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVP-----------AGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77 (174)
T ss_dssp CSSEEECCSSCCS-SCC-----------SCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcEEEeCCCCCC-ccC-----------CCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHh
Confidence 4478999999997 677 4443 78999999999998 5667789999999999999999997666667
Q ss_pred cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092 93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 153 (179)
..+++|++|++++|.+.+..+..+.. +++|++|++++|.+..
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~-------------------l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDN-------------------LKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTT-------------------CTTCSEEECCSSCBCT
T ss_pred CCcchhhEEECCCCccceeCHHHhcc-------------------ccCCCEEEeCCCCccc
Confidence 89999999999999998443333444 4566777777777765
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=4.3e-13 Score=106.20 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=60.6
Q ss_pred ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092 47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126 (179)
Q Consensus 47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~ 126 (179)
++|++|++++|.++ . .+ .+..+++|++|++++|.+++ .|..+ .+|+++++++|.+.+ +| .+..+++|+.+.
T Consensus 131 ~~L~~L~L~~n~l~-~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS-S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 45666666666665 2 33 36666666666666666663 33322 356666666666653 34 355555555544
Q ss_pred ccCCccccccC-CCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 127 LTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 127 l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+.+.....+.. .++|++|++++|.+.. +|. +..+++|++|++++|.++
T Consensus 202 l~~N~l~~l~~~~~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 202 ADNNSLKKLPDLPLSLESIVAGNNILEE-LPE--LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCcCCCCcCcccEEECcCCcCCc-ccc--cCCCCCCCEEECCCCcCC
Confidence 44322221111 1245555555555543 332 223555555555555544
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=3.5e-13 Score=106.74 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=67.9
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
++|+.|++++|.+++ +| .+..+++|++|++++|.++ ..+.. ..+|++|++++|.+++ .| .
T Consensus 131 ~~L~~L~L~~n~l~~-lp------------~~~~l~~L~~L~l~~N~l~--~lp~~---~~~L~~L~L~~n~l~~-l~-~ 190 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP------------ELQNSSFLKIIDVDNNSLK--KLPDL---PPSLEFIAAGNNQLEE-LP-E 190 (454)
T ss_dssp TTCCEEECCSSCCSS-CC------------CCTTCTTCCEEECCSSCCS--CCCCC---CTTCCEEECCSSCCSS-CC-C
T ss_pred CCCCEEECcCCCCCC-Cc------------ccCCCCCCCEEECCCCcCc--ccCCC---cccccEEECcCCcCCc-Cc-c
Confidence 355555666555553 44 4777888888888888876 23332 2477777777777774 34 4
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCC
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~ 153 (179)
++.+++|+++++++|.+.+ +|.... +|+.+.+.+ .+| .++.+++|++|++++|.+.+
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-l~~~~~---~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-LPDLPL---SLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCCCCT---TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred ccCCCCCCEEECCCCcCCc-CCCCcC---cccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 6777777777777777663 343322 233322221 233 24455555555555555554
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=3.1e-13 Score=93.80 Aligned_cols=106 Identities=25% Similarity=0.244 Sum_probs=85.7
Q ss_pred ceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc
Q 042092 49 SQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT 128 (179)
Q Consensus 49 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~ 128 (179)
-+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+..
T Consensus 14 ~~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~------------- 76 (174)
T 2r9u_A 14 QTLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV------------- 76 (174)
T ss_dssp SSEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------------
T ss_pred CcEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH-------------
Confidence 368999999996 4555443 89999999999999888888999999999999999988432222
Q ss_pred CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092 129 CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 129 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
+..+++|++|++++|.+.+ ++...+..+++|++|++++|+++.
T Consensus 77 ------~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 77 ------FDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ------TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ------hCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeCCCCccc
Confidence 3445689999999999998 555545559999999999999863
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=1e-14 Score=112.16 Aligned_cols=160 Identities=24% Similarity=0.197 Sum_probs=114.0
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhccc-cceEEEeeCccccCCcccccccCC-----CCccEEEeccCCC
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFIL-HSQNLNLCGNDFNYSKISYGFSQF-----RSLTILNLRHYNF 84 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~l~~~~l 84 (179)
.+.|+.|++++|.+++..+. .+...+..++ +|++|++++|.++ ...+..+..+ ++|++|++++|.+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~-------~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTV-------ELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHH-------HHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCCceEEEccCCCCChHHHH-------HHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 45599999999998854320 0002456677 8999999999997 3445445554 9999999999999
Q ss_pred CCCCCcccc----CC-CCccEEEcCCCccCCCCCCcC----CC-CcccccccccCCc---------cccccCCC-cccEE
Q 042092 85 RGSIPPSFC----NL-TQLMHLDLSSNILSGHIPSSL----SN-LEQLREKKLTCSI---------SSCIFELV-NLTKV 144 (179)
Q Consensus 85 ~~~~~~~l~----~l-~~L~~l~l~~n~l~~~~~~~~----~~-l~~L~~~~l~~~~---------~~~~~~~~-~L~~L 144 (179)
++..+..+. .+ ++|++|++++|.+.+..+..+ .. .++|+.+++++.. +..+...+ +|++|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 866665443 44 899999999999975554433 22 2467776665432 22334555 89999
Q ss_pred EcCCCccCCchhhHhh---cCC-CCCcEEEccCCcccc
Q 042092 145 SLSSNNLSSNVELYMF---TKL-KSLEVLDLSYNKLSL 178 (179)
Q Consensus 145 ~l~~n~~~~~~~~~~~---~~l-~~L~~L~l~~n~l~~ 178 (179)
++++|.+.+..+..+. ... ++|++|++++|.+++
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 9999999885554332 335 599999999999875
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=4.4e-13 Score=108.82 Aligned_cols=134 Identities=24% Similarity=0.248 Sum_probs=76.2
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 91 (179)
.+++.|++++|.+++ +| ..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|.
T Consensus 59 ~~L~~L~Ls~n~L~~-lp-----------~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LP-----------DNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC-CC-----------SCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred CCccEEEeCCCCCCc-cC-----------HhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 378899999998885 66 333 256777777777775 233 345677777777777764 444
Q ss_pred ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcccccc-CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEE
Q 042092 92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD 170 (179)
Q Consensus 92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 170 (179)
+.. +|++|++++|.+.+ +|. .+++|+.+.+.++....+. .+++|++|++++|.+++ +|. +. ++|+.|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~ 186 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP---ESLEALD 186 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEE
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh---CCCCEEE
Confidence 443 66666776666663 444 3444444433332111111 23455566666665555 433 21 4555555
Q ss_pred ccCCccc
Q 042092 171 LSYNKLS 177 (179)
Q Consensus 171 l~~n~l~ 177 (179)
+++|.|+
T Consensus 187 Ls~N~L~ 193 (571)
T 3cvr_A 187 VSTNLLE 193 (571)
T ss_dssp CCSSCCS
T ss_pred CcCCCCC
Confidence 5555554
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=1.3e-12 Score=107.13 Aligned_cols=77 Identities=23% Similarity=0.222 Sum_probs=49.8
Q ss_pred CCccEEEcCCCccCCCCCCcCCCCcccccccccCCcccccc-CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092 96 TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174 (179)
Q Consensus 96 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (179)
++|++|++++|.+. .+|. .+++|+.+.++++....+. .+++|++|++++|.++. +|..+.. +++|+.|++++|
T Consensus 221 ~~L~~L~Ls~N~L~-~lp~---~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~-lp~~l~~-l~~L~~L~L~~N 294 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIH-LSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCS-CCGGGGG-SCTTCEEECCSC
T ss_pred CCCCEEEccCCccC-cCCC---CCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCc-CCHHHhh-ccccCEEEecCC
Confidence 45666666666665 2342 2344444444432221111 45689999999999986 6766555 999999999999
Q ss_pred cccc
Q 042092 175 KLSL 178 (179)
Q Consensus 175 ~l~~ 178 (179)
+++|
T Consensus 295 ~l~~ 298 (622)
T 3g06_A 295 PLSE 298 (622)
T ss_dssp CCCH
T ss_pred CCCC
Confidence 9875
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=6.1e-13 Score=92.26 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=87.8
Q ss_pred chhccccceEEEeeCccccCCcccccccCC-CCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFSQF-RSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
.+..+..+++|++++|.++ . .+. +..+ ++|++|++++|.+++. +.+..+++|+++++++|.+.+. |..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~----- 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-V-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEG----- 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-S-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSC-----
T ss_pred hcCCcCCceEEEeeCCCCc-h-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc-Ccc-----
Confidence 5677889999999999997 3 344 4444 4999999999999854 6788899999999999998733 321
Q ss_pred ccccccccCCccccccCCCcccEEEcCCCccCCchhh-HhhcCCCCCcEEEccCCcccc
Q 042092 121 QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVEL-YMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 121 ~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~ 178 (179)
.+..+++|++|++++|.+.. ++. ..+..+++|+.|++++|+++.
T Consensus 83 -------------~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 83 -------------LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp -------------HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred -------------hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC
Confidence 12456789999999999987 554 234459999999999999864
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=3.1e-12 Score=104.85 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=9.1
Q ss_pred CceeeecccccCCCCCC
Q 042092 13 AFMNRLLHYSCLSNSFP 29 (179)
Q Consensus 13 ~l~~l~l~~n~~~~~~~ 29 (179)
.++.+++++|.++ .+|
T Consensus 41 ~l~~L~ls~n~L~-~lp 56 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLP 56 (622)
T ss_dssp CCCEEECCSSCCS-CCC
T ss_pred CCcEEEecCCCcC-ccC
Confidence 3556666666665 444
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=2.5e-13 Score=104.06 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=90.2
Q ss_pred hhhhcccCceeeecccccCCCCCCcc-----h----------hhhheecccchhccccceEEEeeCccccCCcccccccC
Q 042092 6 SECARNCAFMNRLLHYSCLSNSFPSR-----K----------KLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQ 70 (179)
Q Consensus 6 ~~~~~~~~l~~l~l~~n~~~~~~~~~-----~----------~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~ 70 (179)
..+..+++|++|++++|.+.+.++.. . .++....+..+..+++|++|++++|.+. ...+..+..
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~ 126 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCC
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcc
Confidence 34677899999999999987655520 0 0000011223444455555555555543 222222333
Q ss_pred CCCccEEEecc-CCCCCCCCccccCC-CCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCcc-ccccCCCccc
Q 042092 71 FRSLTILNLRH-YNFRGSIPPSFCNL-TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSIS-SCIFELVNLT 142 (179)
Q Consensus 71 l~~L~~L~l~~-~~l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~-~~~~~~~~L~ 142 (179)
..++..+++.+ +.+....+..|..+ ..++.+++++|.+. .++.......+++...+. ..+| ..|..+++|+
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 34444444433 23332333334444 35778889999887 455544455566654332 2344 4578889999
Q ss_pred EEEcCCCccCCchhhHhhcCCCCCcEEEccC
Q 042092 143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSY 173 (179)
Q Consensus 143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (179)
+|++++|.++. +|... +.+|+.|.+.+
T Consensus 206 ~LdLs~N~l~~-lp~~~---~~~L~~L~~l~ 232 (350)
T 4ay9_X 206 ILDISRTRIHS-LPSYG---LENLKKLRARS 232 (350)
T ss_dssp EEECTTSCCCC-CCSSS---CTTCCEEECTT
T ss_pred hhhcCCCCcCc-cChhh---hccchHhhhcc
Confidence 99999999998 55432 44455555433
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=2.9e-15 Score=118.21 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=42.9
Q ss_pred hcccCceeeecccccCCC----CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCC----CccEEEec
Q 042092 9 ARNCAFMNRLLHYSCLSN----SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFR----SLTILNLR 80 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~----~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~----~L~~L~l~ 80 (179)
...++|+.|++++|.+++ .++ ..+..+++|++|++++|.+++......+..++ +|++|+++
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~-----------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~ 93 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDIS-----------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 93 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHH-----------HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred hhcCCccEEEccCCCCCHHHHHHHH-----------HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEcc
Confidence 344566666666666552 122 33444555555555555554211111112233 45555555
Q ss_pred cCCCCC----CCCccccCCCCccEEEcCCCccC
Q 042092 81 HYNFRG----SIPPSFCNLTQLMHLDLSSNILS 109 (179)
Q Consensus 81 ~~~l~~----~~~~~l~~l~~L~~l~l~~n~l~ 109 (179)
+|.+++ .++..+..+++|++|++++|.+.
T Consensus 94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 555542 22444455555555555555543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=6.7e-15 Score=104.14 Aligned_cols=128 Identities=19% Similarity=0.126 Sum_probs=101.5
Q ss_pred hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
.+...++|+.|++++|.+++ +| .+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~------------~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS------------SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC------------CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred HHhcCCCCCEEECCCCCCcc-cc------------ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCc
Confidence 45667899999999999985 55 6888999999999999997 456667778999999999999985
Q ss_pred CCCccccCCCCccEEEcCCCccCCCCC-CcCCCCcccccccccCC-----ccc----------cccCCCcccEEEcCCCc
Q 042092 87 SIPPSFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQLREKKLTCS-----ISS----------CIFELVNLTKVSLSSNN 150 (179)
Q Consensus 87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~~~l~~~-----~~~----------~~~~~~~L~~L~l~~n~ 150 (179)
.| .+..+++|+++++++|.+.+..+ ..+..+++|+.+.+.++ .|. .+..+++|++|| ++.
T Consensus 108 -l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 108 -LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp -HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred -CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 44 67888999999999999984322 46778888888666643 222 267789999987 777
Q ss_pred cCC
Q 042092 151 LSS 153 (179)
Q Consensus 151 ~~~ 153 (179)
+..
T Consensus 184 i~~ 186 (198)
T 1ds9_A 184 VDV 186 (198)
T ss_dssp GTT
T ss_pred cCH
Confidence 765
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=3.6e-15 Score=117.66 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=81.6
Q ss_pred ccCceeeecccccCCCC----CCcchhhhheecccchhccccceEEEeeCccccCCcc----cccccCCCCccEEEeccC
Q 042092 11 NCAFMNRLLHYSCLSNS----FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKI----SYGFSQFRSLTILNLRHY 82 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~l~~~ 82 (179)
.+.|+.|++++|.+++. ++ ..+..+++|++|++++|.+++... +..+..+++|+.|++++|
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~-----------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLC-----------GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHH-----------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCceEEEccCCCCcHHHHHHHH-----------HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 45777788887777642 33 445556666666666666542111 111224556666666666
Q ss_pred CCCCC----CCccccCCCCccEEEcCCCccCC-----------------------------C----CCCcCCCCcccccc
Q 042092 83 NFRGS----IPPSFCNLTQLMHLDLSSNILSG-----------------------------H----IPSSLSNLEQLREK 125 (179)
Q Consensus 83 ~l~~~----~~~~l~~l~~L~~l~l~~n~l~~-----------------------------~----~~~~~~~l~~L~~~ 125 (179)
.++.. ++..+..+++|+++++++|.+.+ . ++..+..+++|+.+
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 55532 23334445555555555555432 1 12223333445444
Q ss_pred cccCCc-----cccccC-----CCcccEEEcCCCccCC----chhhHhhcCCCCCcEEEccCCcccc
Q 042092 126 KLTCSI-----SSCIFE-----LVNLTKVSLSSNNLSS----NVELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 126 ~l~~~~-----~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
++++.. +..+.. .+.|++|++++|.+++ .++..+.. +++|++|++++|++++
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCH
Confidence 444321 111111 4567777777777664 34444444 6777777777777653
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=5.6e-15 Score=114.27 Aligned_cols=157 Identities=16% Similarity=0.129 Sum_probs=105.0
Q ss_pred ccCceeeecccccCCCCCCcchhhhheecccchhcc-----ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092 11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFI-----LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR 85 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (179)
.+.++.|++++|.++.... ..+... +.|++|++++|.+++.........+++|+.|++++|.++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~-----------~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC-----------TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH-----------HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred HhhCCEEEecCCCCCHHHH-----------HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 3678889999988874322 233332 688899999998863223333345678889999999887
Q ss_pred CCCCccc-----cCCCCccEEEcCCCccCCC----CCCcCCCCcccccccccCCc---------cccccCCCcccEEEcC
Q 042092 86 GSIPPSF-----CNLTQLMHLDLSSNILSGH----IPSSLSNLEQLREKKLTCSI---------SSCIFELVNLTKVSLS 147 (179)
Q Consensus 86 ~~~~~~l-----~~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~~~l~~~~---------~~~~~~~~~L~~L~l~ 147 (179)
+.....+ ...++|++|++++|.+... ++..+...++|+.+++.++. ...+...+.|++|+++
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 4433333 2357789999999887532 23344556677776666432 3345567789999999
Q ss_pred CCccCCchhhHhh---cCCCCCcEEEccCCcccc
Q 042092 148 SNNLSSNVELYMF---TKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 148 ~n~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~ 178 (179)
+|.+.+.....+. ...++|++|++++|.|+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 9999874333322 236889999999999864
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=3.2e-12 Score=97.56 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=84.3
Q ss_pred eeeecccc-cCCCCCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092 15 MNRLLHYS-CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF 92 (179)
Q Consensus 15 ~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l 92 (179)
..++.+++ .++ .+| . +..+.+|++|+|++ |.++ ...+..|.++++|+.|++++|.+++..|..|
T Consensus 11 ~~v~~~~~n~l~-~ip-----------~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLH-----------H-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76 (347)
T ss_dssp SCEECCSSCCCT-TTT-----------T-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred CEEEcCCCCCCC-ccC-----------C-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHh
Confidence 45788887 787 688 7 88899999999996 9997 4666789999999999999999998888889
Q ss_pred cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092 93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 153 (179)
..+++|++|++++|.+.+..+..+..+ .|+.|++.+|.+..
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~--------------------~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGL--------------------SLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSC--------------------CCCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccC--------------------CceEEEeeCCCccC
Confidence 999999999999999984433333322 26677777777764
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=6.9e-12 Score=95.66 Aligned_cols=104 Identities=21% Similarity=0.209 Sum_probs=84.9
Q ss_pred eEEEeeCc-cccCCcccccccCCCCccEEEecc-CCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092 50 QNLNLCGN-DFNYSKISYGFSQFRSLTILNLRH-YNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127 (179)
Q Consensus 50 ~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l 127 (179)
..++++++ .++ .+|. +..+++|+.|++++ |.++...+..|..+++|++|++++|.+.+..|..|
T Consensus 11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----------- 76 (347)
T 2ifg_A 11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF----------- 76 (347)
T ss_dssp SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG-----------
T ss_pred CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh-----------
Confidence 35688888 786 4666 89999999999996 99997777789999999999999999885555444
Q ss_pred cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 128 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
..+++|++|+|++|.+.+ +|...+..++ |+.|++++|++.
T Consensus 77 --------~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 --------HFTPRLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp --------GSCSCCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred --------cCCcCCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence 445689999999999998 6655666455 999999999986
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1.1e-11 Score=94.11 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCCccEEEcCCCccCCCCCCcCCCCcccccccccCC----ccccccCCCccc-EEEcCCCccCCchhhHhhcCCCCCcEE
Q 042092 95 LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLT-KVSLSSNNLSSNVELYMFTKLKSLEVL 169 (179)
Q Consensus 95 l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~L~~L 169 (179)
+++|+.+++.+|.+.......|..+.+|+.+.+... ....|..+.+|+ .+++.. .++. ++...+..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEE
Confidence 456777777777776444556777777776555432 233566677777 777776 5555 444445557777777
Q ss_pred EccCCccc
Q 042092 170 DLSYNKLS 177 (179)
Q Consensus 170 ~l~~n~l~ 177 (179)
+++.|.++
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 77666553
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=3.9e-11 Score=91.00 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=82.3
Q ss_pred CCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccc-cccccC----CccccccCCCcccEEE
Q 042092 71 FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR-EKKLTC----SISSCIFELVNLTKVS 145 (179)
Q Consensus 71 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~-~~~l~~----~~~~~~~~~~~L~~L~ 145 (179)
+++|+.+++++|.++.+.+..|..+.+|+.+++..| +.......|..+.+|+ ...+.. ..+..|..+++|+.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence 789999999999999777778999999999999998 7656677899999998 766654 3356788999999999
Q ss_pred cCCCccCCchhhHhhcCCCCCcEEEc
Q 042092 146 LSSNNLSSNVELYMFTKLKSLEVLDL 171 (179)
Q Consensus 146 l~~n~~~~~~~~~~~~~l~~L~~L~l 171 (179)
++.|.+.. ++...+..+++|+.+..
T Consensus 304 l~~n~i~~-I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITT-LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred eCCCccCc-cchhhhcCCcchhhhcc
Confidence 99999998 66656667999998763
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=5e-12 Score=102.57 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=31.5
Q ss_pred CCCCccccccccc----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEcc
Q 042092 116 LSNLEQLREKKLT----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLS 172 (179)
Q Consensus 116 ~~~l~~L~~~~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 172 (179)
+..+++|+.+.+. ..++..+..+++|++|++++|.+.+.....+...+++|+.|+++
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 3344444444332 23344455667777777777776553333334446666666665
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.13 E-value=1e-11 Score=100.73 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=46.2
Q ss_pred cccCceeeecccccCCCCCCcchhhhheecccchh-ccccceEEEeeCc-cccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF-FILHSQNLNLCGN-DFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
..++|+.|++++|.+++..+ ..+. .+++|++|++++| .++....+..+..+++|++|++++|.+++.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~-----------~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCL-----------ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHH-----------HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred hCCCCCeEEeeCcEEcHHHH-----------HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 34567777777776664333 2333 4566666666666 333111333334566666666666665543
Q ss_pred CCcccc----CCCCccEEEcCCCc
Q 042092 88 IPPSFC----NLTQLMHLDLSSNI 107 (179)
Q Consensus 88 ~~~~l~----~l~~L~~l~l~~n~ 107 (179)
.+..+. .+++|++|++++|.
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCC
T ss_pred chHHHHHHhhcCCcCcEEEecccC
Confidence 333222 34456666665554
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=3.2e-10 Score=91.96 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=41.1
Q ss_pred cCCCCccEEEcCCCccCCCCC-CcCCCCcccccccccCC-----ccccccCCCcccEEEcC-----------CCccCCch
Q 042092 93 CNLTQLMHLDLSSNILSGHIP-SSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLS-----------SNNLSSNV 155 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~-----------~n~~~~~~ 155 (179)
..+++|++|++++|.+.+... ..+..+++|+.+.+... ++.....+++|++|+++ .+.+++..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 344455555555555432211 22344444544443311 11122345666777776 24554433
Q ss_pred hhHhhcCCCCCcEEEccCCcccc
Q 042092 156 ELYMFTKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~~ 178 (179)
...+...+++|+.|+++.|.+++
T Consensus 370 ~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHHHHhhCccCeEEEeecCCccH
Confidence 33334446677777776666653
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=1.8e-11 Score=94.55 Aligned_cols=152 Identities=19% Similarity=0.141 Sum_probs=102.1
Q ss_pred cCceeeecccccCCCCCCcchhhhheecccch-hccccceEEEeeCccccCCcccccc-----cCCCCccEEEeccCCCC
Q 042092 12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESL-FFILHSQNLNLCGNDFNYSKISYGF-----SQFRSLTILNLRHYNFR 85 (179)
Q Consensus 12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~-----~~l~~L~~L~l~~~~l~ 85 (179)
+.|+.|++++|.++.... ..+ ..+.+|++|++++|.+++ .....+ ...++|+.|++++|.++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~-----------~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGL-----------RTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp SCEEEEECTTCCCCHHHH-----------HHTHHHHHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred CCceEEEecCCCCCHHHH-----------HHHHHHHHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence 689999999999874322 222 346789999999999863 222222 35688999999999987
Q ss_pred CC----CCccccCCCCccEEEcCCCccCCC----CCCcCCCCcccccccccCCc---------cccccCCCcccEEEcCC
Q 042092 86 GS----IPPSFCNLTQLMHLDLSSNILSGH----IPSSLSNLEQLREKKLTCSI---------SSCIFELVNLTKVSLSS 148 (179)
Q Consensus 86 ~~----~~~~l~~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~~~l~~~~---------~~~~~~~~~L~~L~l~~ 148 (179)
+. ++..+...++|++|++++|.+.+. ++..+...++|+.+++.++. ...+...+.|++|++++
T Consensus 169 ~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 42 333446788999999999998642 24455666678777666532 22344568999999999
Q ss_pred CccCCchhhHhhcCCCC-----CcEEE--ccCCcc
Q 042092 149 NNLSSNVELYMFTKLKS-----LEVLD--LSYNKL 176 (179)
Q Consensus 149 n~~~~~~~~~~~~~l~~-----L~~L~--l~~n~l 176 (179)
|.+.+.....+.. +.. ++.+. +..+.+
T Consensus 249 N~i~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 249 NELSSEGRQVLRD-LGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp SSCCHHHHHHHHH-CC------CEEECCCC----C
T ss_pred CCCCHHHHHHHHH-HhcCCCccchhhHhhhcCCcc
Confidence 9998855554443 321 55665 555544
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.90 E-value=8.8e-11 Score=95.25 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=43.0
Q ss_pred cCCCCccEEEcCCCccCCCCCCcCCC-CcccccccccCCc-----cccc-cCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092 93 CNLTQLMHLDLSSNILSGHIPSSLSN-LEQLREKKLTCSI-----SSCI-FELVNLTKVSLSSNNLSSNVELYMFTKLKS 165 (179)
Q Consensus 93 ~~l~~L~~l~l~~n~l~~~~~~~~~~-l~~L~~~~l~~~~-----~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 165 (179)
..+++|+.|++++ .+.+..+..+.. +++|+.+.+.... ...+ ..+++|++|++++|.+++.....+...+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3455666666654 333222222222 4445544443211 1112 346677777777777754333334444677
Q ss_pred CcEEEccCCccc
Q 042092 166 LEVLDLSYNKLS 177 (179)
Q Consensus 166 L~~L~l~~n~l~ 177 (179)
|+.|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 777777777664
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=3.4e-08 Score=76.94 Aligned_cols=101 Identities=11% Similarity=0.149 Sum_probs=54.6
Q ss_pred CCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccC-----CCCCCcCCCCcccccccccCC----ccccccCCCccc
Q 042092 72 RSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS-----GHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLT 142 (179)
Q Consensus 72 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~-----~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~ 142 (179)
.+|+.+.+. +.+..+....|..+++|+.+++.++.+. ......|..+++|+...+... -...|..+.+|+
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCcc
Confidence 344444442 2233344455666666777766665443 233455666666666544422 233456667777
Q ss_pred EEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092 143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176 (179)
Q Consensus 143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 176 (179)
.+.+..+ +.. +....+..+ +|+.+++++|.+
T Consensus 327 ~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 327 QLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSC
T ss_pred EEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCC
Confidence 7777544 444 444444446 777777777654
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=3.1e-08 Score=76.19 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=97.3
Q ss_pred hcccCceeeecccccCCC-CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSN-SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS 87 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 87 (179)
..+++|+.|.+....... .+. |. ....+...+..++.|+.|.+++|.- ...+. + .+++|+.|++..+.+...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is-~~--~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEIS-WI--EQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGG-GC--BCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred hhcchhhheeecCcchhhcccc-cc--cccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCCChH
Confidence 346788888886543210 000 00 0001114556778999999998831 12232 3 378999999998887633
Q ss_pred CCcccc--CCCCccEEEcCC--CccCCC-----CCCcC--CCCcccccccccCC-----ccccc---cCCCcccEEEcCC
Q 042092 88 IPPSFC--NLTQLMHLDLSS--NILSGH-----IPSSL--SNLEQLREKKLTCS-----ISSCI---FELVNLTKVSLSS 148 (179)
Q Consensus 88 ~~~~l~--~l~~L~~l~l~~--n~l~~~-----~~~~~--~~l~~L~~~~l~~~-----~~~~~---~~~~~L~~L~l~~ 148 (179)
....+. .+++|+.|+++. +...+. +...+ ..+++|+.+.+... .+..+ ..++.|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 223333 689999998853 221111 11112 23567777666431 12222 2468999999999
Q ss_pred CccCCchhhHhh---cCCCCCcEEEccCCcccc
Q 042092 149 NNLSSNVELYMF---TKLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 149 n~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~ 178 (179)
|.+.+.....+. .++++|+.|+++.|.++.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 999875444433 347899999999998864
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=1.6e-09 Score=75.68 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=75.7
Q ss_pred chhccccceEEEeeCc-cccCCc---ccccccCCCCccEEEeccCCCCCC----CCccccCCCCccEEEcCCCccCCCCC
Q 042092 42 SLFFILHSQNLNLCGN-DFNYSK---ISYGFSQFRSLTILNLRHYNFRGS----IPPSFCNLTQLMHLDLSSNILSGHIP 113 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n-~i~~~~---~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~l~l~~n~l~~~~~ 113 (179)
.+...+.|++|++++| .++... ....+...++|++|++++|.+.+. +...+...++|++|++++|.+.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4555677888888888 775211 233455667888888888887642 22334445778888888888763211
Q ss_pred CcCCCCcccccccccCCccccccCCCcccEEEc--CCCccCCchhhHh---hcCCCCCcEEEccCCccc
Q 042092 114 SSLSNLEQLREKKLTCSISSCIFELVNLTKVSL--SSNNLSSNVELYM---FTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 114 ~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l--~~n~~~~~~~~~~---~~~l~~L~~L~l~~n~l~ 177 (179)
. .+...+...+.|++|++ ++|.+.+.....+ ....++|++|++++|.+.
T Consensus 111 ~---------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 L---------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp H---------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred H---------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 11223334457888888 7788876433222 223577888888888764
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=7.4e-09 Score=76.32 Aligned_cols=68 Identities=24% Similarity=0.206 Sum_probs=49.2
Q ss_pred hccccceEEEeeCccccCC-cccccccCCCCccEEEeccCCCCCCCCccccCCC--CccEEEcCCCccCCCCC
Q 042092 44 FFILHSQNLNLCGNDFNYS-KISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLT--QLMHLDLSSNILSGHIP 113 (179)
Q Consensus 44 ~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~--~L~~l~l~~n~l~~~~~ 113 (179)
..++.|+.|++++|.+++- ..+..+..+++|+.|++++|.+++. ..+..+. +|++|++.+|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 5578899999999998721 2234556889999999999998854 2333333 89999999998875444
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=2.9e-09 Score=74.34 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=86.0
Q ss_pred hcccCceeeecccc-cCCCCCCcchhhhheecccchhccccceEEEeeCccccCCc---ccccccCCCCccEEEeccCCC
Q 042092 9 ARNCAFMNRLLHYS-CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSK---ISYGFSQFRSLTILNLRHYNF 84 (179)
Q Consensus 9 ~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~l~~~~l 84 (179)
...+.|++|++++| .+..... ..+...+...+.|++|++++|.+++.. ....+...++|++|++++|.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~-------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTL-------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHH-------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred hcCCCCCEEEecCCCCCCHHHH-------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 45788999999999 8874211 000145566789999999999986322 234455668999999999998
Q ss_pred CCC----CCccccCCCCccEEEc--CCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092 85 RGS----IPPSFCNLTQLMHLDL--SSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS 153 (179)
Q Consensus 85 ~~~----~~~~l~~l~~L~~l~l--~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 153 (179)
++. +...+...++|++|++ ++|.+....... +...+...+.|++|++++|.+..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~---------------l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME---------------IANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH---------------HHHHHHHCSSCCEEECCCSSHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH---------------HHHHHHhCCCcCEEeccCCCCCh
Confidence 853 3455667789999999 888886332111 12233445689999999998864
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.50 E-value=7.1e-07 Score=69.54 Aligned_cols=129 Identities=9% Similarity=0.061 Sum_probs=93.1
Q ss_pred chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC-----CCCCccccCCCCccEEEcCCCccCCCCCCcC
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR-----GSIPPSFCNLTQLMHLDLSSNILSGHIPSSL 116 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~ 116 (179)
+|.. ..|+.+.+..+ ++ .....+|.++++|+.+.+.++.+. .+.+..|..+++|+.+++.. .+.......|
T Consensus 244 aF~~-~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 244 AFRE-SGITTVKLPNG-VT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp TTTT-CCCSEEEEETT-CC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred cccc-CCccEEEeCCC-cc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence 4444 56777777544 43 355778999999999999888654 35566788999999999984 4664556788
Q ss_pred CCCcccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCC-CCcEEEccCCcc
Q 042092 117 SNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK-SLEVLDLSYNKL 176 (179)
Q Consensus 117 ~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l 176 (179)
..+.+|+.+.+... -...|..+ +|+.+++.+|.+.. ++...+..++ +++.+.+..+.+
T Consensus 320 ~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 320 GGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECGGGH
T ss_pred cCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCHHHH
Confidence 88888888666543 34567788 99999999998877 3333344454 678888776543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=2.3e-07 Score=71.38 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=98.7
Q ss_pred ccCceeeecccccCCC-CCCcchhhhheecccchhccccceEEEeeCcccc-----C---CcccccccCCCCccEEEecc
Q 042092 11 NCAFMNRLLHYSCLSN-SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFN-----Y---SKISYGFSQFRSLTILNLRH 81 (179)
Q Consensus 11 ~~~l~~l~l~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-----~---~~~~~~~~~l~~L~~L~l~~ 81 (179)
.+.++.|.+......+ .. ......+..+...+++|+.|.+...... + ......+..+++|+.|.+++
T Consensus 106 ~~~v~~L~lg~~~~~~~~~----~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g 181 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDC----SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181 (362)
T ss_dssp GGGCSEEEECCCCSSSCCS----HHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred chhcceEEEcccccCCCcH----HHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence 4456777776554331 11 0011112234567889999998765321 0 12334456789999999988
Q ss_pred CCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCC--CCccccccccc-------CC--c---cccc--cCCCcccEEE
Q 042092 82 YNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLS--NLEQLREKKLT-------CS--I---SSCI--FELVNLTKVS 145 (179)
Q Consensus 82 ~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~--~l~~L~~~~l~-------~~--~---~~~~--~~~~~L~~L~ 145 (179)
+.-. .++. + .+++|++|++..+.+.......+. .+++|+.+.+. +. + ...+ ..+++|++|+
T Consensus 182 ~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 182 TNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258 (362)
T ss_dssp CBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEE
T ss_pred CCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEe
Confidence 7311 2333 3 378999999998887533222222 46667765542 11 0 1122 2478999999
Q ss_pred cCCCccCCchhhHhhc--CCCCCcEEEccCCcccc
Q 042092 146 LSSNNLSSNVELYMFT--KLKSLEVLDLSYNKLSL 178 (179)
Q Consensus 146 l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~ 178 (179)
+.+|.+.+..+..+.. .+++|++|+++.|.+++
T Consensus 259 L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp EESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 9999987654444442 47899999999998864
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=2.1e-07 Score=68.49 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=62.0
Q ss_pred hcccCceeeecccccCCC--CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092 9 ARNCAFMNRLLHYSCLSN--SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG 86 (179)
Q Consensus 9 ~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~ 86 (179)
...+.|+.|+|++|.+++ .++ ..+..+++|+.|+|++|.+.+...-..+..+ +|+.|++++|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~-----------~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS-----------SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT-----------THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccch-----------hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 346899999999999996 445 5677899999999999999732112223334 99999999999886
Q ss_pred CCCc-------cccCCCCccEEE
Q 042092 87 SIPP-------SFCNLTQLMHLD 102 (179)
Q Consensus 87 ~~~~-------~l~~l~~L~~l~ 102 (179)
..|. .+..+++|+.||
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCcchhHHHHHHHHCcccCeEC
Confidence 5542 255688998886
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=9.7e-08 Score=65.90 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=15.6
Q ss_pred CccEEEeccCC-CCCCCCccccCCCCccEEEcCCC
Q 042092 73 SLTILNLRHYN-FRGSIPPSFCNLTQLMHLDLSSN 106 (179)
Q Consensus 73 ~L~~L~l~~~~-l~~~~~~~l~~l~~L~~l~l~~n 106 (179)
+|+.|++++|. +++.--..+..+++|++|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 45555555543 44322223344455555555544
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=7.1e-07 Score=61.56 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=62.8
Q ss_pred cccceEEEeeCccccCCcccccccCCCCccEEEeccCC-CCCCCCccccCC----CCccEEEcCCCc-cCCCCCCcCCCC
Q 042092 46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYN-FRGSIPPSFCNL----TQLMHLDLSSNI-LSGHIPSSLSNL 119 (179)
Q Consensus 46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~l~l~~n~-l~~~~~~~~~~l 119 (179)
-..|++|++++|.+++.... .+.++++|+.|++++|. +++.--..++.+ ++|++|++++|. +++.-
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G------- 131 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG------- 131 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-------
T ss_pred CceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-------
Confidence 35688888888888743333 35788888888888885 554333334443 368888888774 44221
Q ss_pred cccccccccCCccccccCCCcccEEEcCCCc-cCCch--hhHhhcCCCCCcE
Q 042092 120 EQLREKKLTCSISSCIFELVNLTKVSLSSNN-LSSNV--ELYMFTKLKSLEV 168 (179)
Q Consensus 120 ~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~--~~~~~~~l~~L~~ 168 (179)
...+..+++|++|+++++. +++.. ...+.+.+|+++.
T Consensus 132 ------------l~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 132 ------------IIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp ------------HHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred ------------HHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 1123346788888888885 55421 2233455777653
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.58 E-value=0.00024 Score=54.89 Aligned_cols=127 Identities=11% Similarity=0.086 Sum_probs=74.8
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
.+|..+..|+.+.+..+... ....+|.+++.|+.+.+.. .+..+....|..+.+|+.+++..+ +.......|..+.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccce--ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 45667777888877766442 4456677788888887753 344455566777888888888654 4433355677777
Q ss_pred ccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092 121 QLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK 175 (179)
Q Consensus 121 ~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 175 (179)
+|+...+... -...|..+.+|+.+++.++.... ..+. ...+|+.+.+..+.
T Consensus 335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~-~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW---NAIS-TDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCB-CCCCC---------
T ss_pred CCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh---hhhh-ccCCCCEEEeCCCC
Confidence 7777555432 23456777888888887765421 2223 36667777766554
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.54 E-value=0.0008 Score=51.89 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=72.2
Q ss_pred chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092 42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ 121 (179)
Q Consensus 42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~ 121 (179)
.+..+..++.+.+..+... .....|..+..++........+. ...|..+.+|+.+.+..+ +.......|..+.+
T Consensus 248 ~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred cccccccceeEEcCCCcce--eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCC
Confidence 4555666666666655432 33445556666666555444322 234556667777776554 33233455666677
Q ss_pred cccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092 122 LREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174 (179)
Q Consensus 122 L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (179)
|+...+... -...|..+.+|+.+++..+ +.. ++...+..+.+|+.+++..+
T Consensus 322 L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 322 LVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEEGG
T ss_pred CCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEECCC
Confidence 766555432 2345667778888887665 554 44445555778888777554
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.42 E-value=0.00044 Score=53.37 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=72.6
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+.++..|+.+.+... ++ .....+|.++.+|+.+.+..+ ++.+....|..+.+|+.+.+..+ +.......|..+.
T Consensus 282 ~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred cccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 57888999999999754 43 355678999999999999765 55566678889999999999765 5534457788889
Q ss_pred ccccccccCCcc--ccccCCCcccEEEcCCCcc
Q 042092 121 QLREKKLTCSIS--SCIFELVNLTKVSLSSNNL 151 (179)
Q Consensus 121 ~L~~~~l~~~~~--~~~~~~~~L~~L~l~~n~~ 151 (179)
+|+...+.+... ..+..+..|+.+.+..+.+
T Consensus 358 ~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 998877766432 2455667788877665543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.29 E-value=0.0017 Score=50.02 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=84.5
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+..++.+......+. ...|..+.+|+.+.+..+ +..+....|..+.+|+.+++..+ +.......|..+.
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred cccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 56777888888888776553 345778899999998765 55466677888999999998754 5534467788888
Q ss_pred ccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEE
Q 042092 121 QLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169 (179)
Q Consensus 121 ~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 169 (179)
+|+...+... -...|..+.+|+.+++..+ +.. +... +..+.+|+.+
T Consensus 344 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~-F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGANAFQGCINLKKVELPKR-LEQ-YRYD-FEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GGG-GGGG-BCTTCEEEEE
T ss_pred CCCEEEECccccEehHHHhhCCCCCCEEEECCC-CEE-hhhe-ecCCCCCcEE
Confidence 8888666543 2346788999999998754 332 3333 4447777654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.26 E-value=0.0014 Score=50.13 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=63.2
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+..|+.+.+..+ ++ .....+|.++.+|+.+.+..+ +..+....|..+.+|+.+.+.++.+.......|..+.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 45566677777777665 32 234455667777777776543 3334445566777777777776666544455666666
Q ss_pred ccccccccCC----ccccccCCCcccEEEcCCC
Q 042092 121 QLREKKLTCS----ISSCIFELVNLTKVSLSSN 149 (179)
Q Consensus 121 ~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n 149 (179)
+|+...+... -...|..+.+|+.+.+..+
T Consensus 311 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 311 KLSSVTLPTALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEECCTTCCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCCEEEcCccccEEHHHHhhCCCCCCEEEECCc
Confidence 6666555432 2234566667777666543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=4.2e-05 Score=53.66 Aligned_cols=117 Identities=12% Similarity=0.126 Sum_probs=61.6
Q ss_pred ccccceEEEeeCc-cccCC---cccccccCCCCccEEEeccCCCCCCCC----ccccCCCCccEEEcCCCccCCCCCCcC
Q 042092 45 FILHSQNLNLCGN-DFNYS---KISYGFSQFRSLTILNLRHYNFRGSIP----PSFCNLTQLMHLDLSSNILSGHIPSSL 116 (179)
Q Consensus 45 ~l~~L~~L~l~~n-~i~~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~l~l~~n~l~~~~~~~~ 116 (179)
.-+.|++|+++++ .|.+. .....+..-+.|+.|++++|.+.+... +.+..-.+|++|++++|.|.+.....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a- 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR- 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH-
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH-
Confidence 3466777777764 55321 123344556677777777777764322 23334467788888888776321111
Q ss_pred CCCcccccccccCCccccccCCCcccEEEcCCC---ccCCchhhH---hhcCCCCCcEEEccCCcc
Q 042092 117 SNLEQLREKKLTCSISSCIFELVNLTKVSLSSN---NLSSNVELY---MFTKLKSLEVLDLSYNKL 176 (179)
Q Consensus 117 ~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n---~~~~~~~~~---~~~~l~~L~~L~l~~n~l 176 (179)
+.+.+..-..|++|++++| .+....... ..+.-+.|+.|+++.|.+
T Consensus 118 --------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 --------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp --------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred --------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1111222345777777654 333321111 122355677777776643
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.12 E-value=0.0014 Score=42.75 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=29.8
Q ss_pred cccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092 140 NLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177 (179)
Q Consensus 140 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (179)
+|++|+|++|.|+. ++...+..+++|+.|++++|++.
T Consensus 32 ~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence 68889999999988 66666666888999999988763
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.01 E-value=0.0034 Score=47.93 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=67.0
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE 120 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~ 120 (179)
..+..+..++.+.+..+ +. .....+|.++.+|+.+.+..+.+..+....|.++.+|+.+++..+ ++..-...|..+.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 56778899999999765 33 345677899999999999988887666778999999999999765 5434456788888
Q ss_pred ccccccccC
Q 042092 121 QLREKKLTC 129 (179)
Q Consensus 121 ~L~~~~l~~ 129 (179)
+|+...+..
T Consensus 334 ~L~~i~ip~ 342 (379)
T 4h09_A 334 ALSTISYPK 342 (379)
T ss_dssp TCCCCCCCT
T ss_pred CCCEEEECC
Confidence 888766543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.91 E-value=0.0002 Score=50.17 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=63.3
Q ss_pred hcccCceeeecccc-cCCCCCCcchhhhheecccchhccccceEEEeeCccccCC---cccccccCCCCccEEEeccCCC
Q 042092 9 ARNCAFMNRLLHYS-CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS---KISYGFSQFRSLTILNLRHYNF 84 (179)
Q Consensus 9 ~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~---~~~~~~~~l~~L~~L~l~~~~l 84 (179)
...+.|+.|+|++| .+...-- ..+...+..-+.|++|+|++|.+++. .+...+..-+.|+.|+++.|.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga-------~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERI-------RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHH-------HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHH-------HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34688999999985 7653111 00114566678999999999999632 1223444668999999999999
Q ss_pred CCC----CCccccCCCCccEEEcCCCc
Q 042092 85 RGS----IPPSFCNLTQLMHLDLSSNI 107 (179)
Q Consensus 85 ~~~----~~~~l~~l~~L~~l~l~~n~ 107 (179)
++. +.+.+..-.+|++|++++|.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 853 23345555789999998653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.0024 Score=41.52 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=19.8
Q ss_pred CccEEEeccCCCCCCCCccccCCCCccEEEcCCCcc
Q 042092 73 SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108 (179)
Q Consensus 73 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l 108 (179)
+|+.|++++|.++...+..|..+++|+++++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555544444455555566666665544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.78 E-value=9 Score=23.18 Aligned_cols=40 Identities=15% Similarity=-0.146 Sum_probs=22.4
Q ss_pred cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC
Q 042092 41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY 82 (179)
Q Consensus 41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~ 82 (179)
..|..|..|+.+.+..+-- ..-..+|.+|.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~~v~--~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIG--LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTTSS--CCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCchh--eEcHHHHhccCCccEEEEcCC
Confidence 4556666666666665522 234455666666666655443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.11 E-value=13 Score=22.50 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=37.2
Q ss_pred cccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCc
Q 042092 58 DFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNI 107 (179)
Q Consensus 58 ~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~ 107 (179)
.++ .+-..+|.++.+|+.+.+-.+ ++.+-...|..+.+|+.+.+....
T Consensus 7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 444 455678999999999998876 454777789999999999887653
Done!