BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042094
(485 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147774273|emb|CAN76793.1| hypothetical protein VITISV_026680 [Vitis vinifera]
Length = 1469
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 164/526 (31%), Positives = 266/526 (50%), Gaps = 69/526 (13%)
Query: 2 TIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQ 61
+K+ +E+ +Q + + VE L+ Q E++ S ++ + N+ Q
Sbjct: 18 AVKQNQEQYQQNHNSLQQVVEGLAHQ----LEVVASNVQTLVQMKTKHNSGDSEGSKRQM 73
Query: 62 PEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDG 121
P G +Q R +RLDF +GE+P ++R +Q+ + LA H++G
Sbjct: 74 TNPLFEDNGG-IQTRAVRLDFPKFNGEDPNGWVYRADQFFNYHQTNPHHRVLLASFHMEG 132
Query: 122 DAVPWYHWLEQTMGNMTWAQFKRALVTQFGT--FEDG--------------------DAV 159
A+ W+ +E G +W F RAL T+FG+ +ED +A+
Sbjct: 133 KALVWFQDIEAAGGISSWEGFVRALQTRFGSSPYEDPMEALIRLKQTSTVEDYKSQFEAL 192
Query: 160 GTQ--NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR----- 212
Q L ES+ +SCFLSGLRE+I+ V+ML P++L F LA+ QEE A R
Sbjct: 193 SNQLRGLAESYKLSCFLSGLRENIRFMVRMLNPSNLHIAFGLAKMQEENVAALRRTAKLG 252
Query: 213 RIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGL 272
+P R ++ PSPP + + P +RLS ++ ERR KGL
Sbjct: 253 SVPTRLAIGPPSPPEKRA----------------------IVPVQRLSPSQMKERRDKGL 290
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDE----------QAEALEELPET-LE--VSL 319
C+NCD+++ PGH+CK+ +L +++ D DE +++ EE P +E +S+
Sbjct: 291 CYNCDDKWAPGHKCKSARLFIMECDESSDDEVPKSEVAEGRASKSKEETPIVEIEPGISI 350
Query: 320 KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
AL G+ TMR G++ V IL+D+ STH F++ S+ ++ P T V VA+
Sbjct: 351 HALVGSPNPKTMRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVAN 410
Query: 380 GGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
G + S G C+ VP++ QG + +DF++L + GCDIVLG +WL++LG ILWDFS+L M+F
Sbjct: 411 GQAVRSEGSCAAVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEF 470
Query: 440 TWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
+ + +L G +L + ++ Q K+G+ Q++ S
Sbjct: 471 SVWDKPRKLQGMSPTGISLVEGEKFGKVSRQNKRGLVIQLIDFENS 516
>gi|147789424|emb|CAN66607.1| hypothetical protein VITISV_017554 [Vitis vinifera]
Length = 2822
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 160/485 (32%), Positives = 252/485 (51%), Gaps = 67/485 (13%)
Query: 44 RFQEDRNNNQPLQIN-NQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQR 102
++Q+ N+ Q + N++ P+ R GG +Q R +RLDF +GE+P+ ++R +Q+
Sbjct: 21 QYQQXHNSLQQAWLKGNRRTGPSIRNGG--IQTRAVRLDFPKFNGEDPSGWVYRADQFFN 78
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFG----------- 151
+ LA H++G A+ W+ +E G +W F RAL T+FG
Sbjct: 79 YHQTNPHHRVLLASFHMEGKALVWFQDIEAAGGISSWEGFVRALQTRFGSSPYENPMEAL 138
Query: 152 -------TFEDG----DAVGTQ--NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFE 198
T ED +A+ Q L ES+ +SCFLSGLREDI+ V ML P++L F
Sbjct: 139 IRLKQTSTVEDYKSQFEALSNQLRGLAESYKLSCFLSGLREDIRFMVCMLNPSNLHIAFG 198
Query: 199 LARFQEEYAAVSNR-----RIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGL 253
LA+ QEE A R +P R ++ PSPP +
Sbjct: 199 LAKMQEENVAALRRTAKLGSVPTRLAIGPPSPP----------------------EKRVI 236
Query: 254 PPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDE---------- 303
P +RLS ++ ERR KGLC+NCD+++ PGH+CK+ +L +++ D D+
Sbjct: 237 VPVQRLSPSQMKERRDKGLCYNCDDKWAPGHKCKSARLFIMECDESSDDKVPKSEVAEGR 296
Query: 304 QAEALEELPET-LE--VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA 360
+++ EE P +E +S+ AL G+ TMR G++ V IL+D+ STH F++ S+
Sbjct: 297 ASKSKEETPIVEIEPGISIHALVGSPNPKTMRFLGHICGRAVVILVDTGSTHNFMDPSVI 356
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
++ P T V VA+G + S G C+ VP++ QG + +DF++L + GCDIVLG +
Sbjct: 357 QRAHLPSNPTEGLSVKVANGQAVCSEGSCAAVPLHMQGNLYTIDFYILTLGGCDIVLGVQ 416
Query: 421 WLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIM 480
WL++LG ILWDFS+L M+F+ + +L G +L ++ Q K+G+ Q++
Sbjct: 417 WLQTLGPILWDFSRLQMEFSVWDKPQKLQGMAPTGISLVEGENFGKVSRQNKRGLVIQLI 476
Query: 481 AITTS 485
S
Sbjct: 477 DFENS 481
>gi|147783182|emb|CAN68669.1| hypothetical protein VITISV_039388 [Vitis vinifera]
Length = 1360
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 228/448 (50%), Gaps = 60/448 (13%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
+H++L F +G++PT I++ EQY + + LA HL+G A+ W+ WL + G
Sbjct: 81 QHLKLSFPKFNGDDPTGWIYKAEQYFDFMNITPGQQVQLASFHLEGIALQWHRWLTKFRG 140
Query: 136 NMTWAQFKRALVTQFG--TFEDGDAVGTQ----------------------NLPESFFIS 171
+TW +F +A+ +FG +ED T+ LPE+F I
Sbjct: 141 PLTWDEFTKAVQLRFGPTDYEDPSEALTRLKQTTTVAAYQEAFEKLSHRVDGLPENFLIG 200
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
CF++GL+++I+I V++ +P +L T +AR EE + +R P + + +P+ +S
Sbjct: 201 CFIAGLQDEIRIDVKIKQPRTLADTIGVARLIEERNQL--QRKPTQQTRFQPASVTPKAS 258
Query: 232 PTITKTGGSSQPSLLGPPP-----------PGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
P T +LGPPP P F R++ E ERR KGLC+ CDE+F
Sbjct: 259 PNPTA-------GVLGPPPTQHMNQSSNAQPAT--FHRITNQEARERREKGLCYYCDEKF 309
Query: 281 KPGHRCKAPQLLLLD-------ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRL 333
GHRC+ PQL +++ D+E + E E +PE + A+ G T+ +
Sbjct: 310 VAGHRCERPQLFMIEDSPHMNTEDVEGAHPEQEHHEVIPE---IYFHAIAGTEHPQTICV 366
Query: 334 KGNLKKHGVTILIDSSSTHIFLNSSL-AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
G LK V +LID STH F++ ++ ++G PV +F+V VA+ I +G+C +
Sbjct: 367 MGKLKNKNVMVLIDGGSTHNFIDQAIIVFKFGLPVIRDRKFEVMVANREKIECAGQCRSL 426
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYD 452
+ QG+ D+++LPV+ C +VLG +WL +LG I D+ +LTM F +G + G
Sbjct: 427 TLTIQGYSVTADYYILPVAACQLVLGVQWLETLGPIEMDYKQLTMNFKMEGTSHTFQGLG 486
Query: 453 SLPPALANHGEINQLLLQEKQGIFFQIM 480
++ E N L + G+FFQI+
Sbjct: 487 RTGIEALSNKESNGL---QGTGLFFQII 511
>gi|359479937|ref|XP_002269588.2| PREDICTED: uncharacterized protein LOC100257206 [Vitis vinifera]
Length = 787
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 211/430 (49%), Gaps = 65/430 (15%)
Query: 69 GGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYH 128
G +V + +L+F SG++PT R EQ+ + E + +A HL+G+A W+
Sbjct: 43 GRQIVSSKSAKLEFPRFSGDDPTEWFNRVEQFFDYQSTAENQKVPMAAYHLEGEANQWWQ 102
Query: 129 WLEQTMGN----MTWAQFKRALVTQFG--TFEDGDA-------VGT-------------- 161
WL +T+ ++W +F+ L +FG ED D +GT
Sbjct: 103 WLHRTLKEEGHVISWEKFEEELWARFGPSGCEDFDEALSRIKQLGTLRDYQREFEKLGNR 162
Query: 162 -QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI---PPR 217
Q + + F+ GL+ +I ++M KP SL + LAR +++ A R + P R
Sbjct: 163 VQGWTQKALVGTFMGGLKAEIVDAIRMFKPQSLKEVINLARMRDDQIARQRRFMWLPPVR 222
Query: 218 PSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCD 277
++ P Q + + P P P + LS E +RA+GLCFNC+
Sbjct: 223 APIALP------------------QATRVDPAIPA-KPIKSLSWEEMQRKRAQGLCFNCN 263
Query: 278 EQFKPGHRCKAPQLLLL-------------DADIEDKDEQAEALE--ELPETLEVSLKAL 322
E+F GHRC+ PQLLLL D + D EA E E LE++L AL
Sbjct: 264 ERFTAGHRCQKPQLLLLKGHEGNVDCGNGTDQQTWEDDHGGEAAEVQEHEPKLEITLHAL 323
Query: 323 TGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV 382
TG T TMR+ + H V +LIDS STH F+++ LA + PV T F V VA+G
Sbjct: 324 TGWTAPKTMRVTAKMGPHEVMVLIDSGSTHNFISNRLANKLRLPVIPTETFPVWVANGER 383
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
+ G+ V V QG +F+L F LP+SG D+VLG +WL LG+++ ++ +LTM F W+
Sbjct: 384 LKCQGRYDKVRVELQGTEFYLTLFSLPLSGLDLVLGVQWLEMLGSVVCNWKQLTMDFIWE 443
Query: 443 GQTVQLTGYD 452
Q +L G D
Sbjct: 444 NQDRRLQGVD 453
>gi|147843077|emb|CAN83300.1| hypothetical protein VITISV_044100 [Vitis vinifera]
Length = 1366
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 207/393 (52%), Gaps = 64/393 (16%)
Query: 135 GNMTWAQFKRALVTQFGT--FEDG--------------------DAVGTQ--NLPESFFI 170
G +W F RAL T+FG+ +ED +A+ Q L ES+ +
Sbjct: 113 GISSWEGFVRALQTRFGSSPYEDPMEALIRLKQTSTVEDYKSQFEALSNQLRGLAESYKL 172
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR-----RIPPRPSMSRPSP 225
SCFLSGLREDI+ V+ML P++L F LA+ QEE A R +P R ++ PSP
Sbjct: 173 SCFLSGLREDIRFMVRMLNPSNLHIAFGLAKMQEENXAALRRTAKLGSVPTRLAIGPPSP 232
Query: 226 PLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHR 285
P + + P +RLS ++ ERR KGLC+NCD+++ PGH+
Sbjct: 233 PEKRA----------------------IVPVQRLSPSQMKERRDKGLCYNCDDKWAPGHK 270
Query: 286 CKAPQLLLLDADIEDKDE----------QAEALEELPET-LE--VSLKALTGATPQNTMR 332
CK+ +L +++ D DE +++ EE P +E +S+ AL G+ TMR
Sbjct: 271 CKSXRLFIMECDESSDDEVPKSEVAEGRASKSKEETPIVEIEPGISIHALVGSPNPKTMR 330
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
G++ V IL+D+ STH F++ S+ ++ P T V VA+G + S G C+ V
Sbjct: 331 FLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCAAV 390
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYD 452
P++ QG + +DF++L + GCDIVLG +WL++LG ILWDFS+L M+F+ + +L G
Sbjct: 391 PLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEFSVWDKPRKLQGMS 450
Query: 453 SLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
+L + ++ Q K+G+ Q++ S
Sbjct: 451 PTGISLVEGEKFGKVSRQNKRGLVIQLIDFENS 483
>gi|147860462|emb|CAN82562.1| hypothetical protein VITISV_014148 [Vitis vinifera]
Length = 1384
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 147/517 (28%), Positives = 240/517 (46%), Gaps = 62/517 (11%)
Query: 6 LEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPA 65
L++ + ++ +K+ + + + L E +LS ++ DRN ++ N +
Sbjct: 73 LQDGMSRMELGLTDKLHQMEETIHRLSEALLSNKERSSSNTNDRNG----RVRNNRDNSK 128
Query: 66 GRIGGA--LVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDA 123
G++ G + + +L+F SG +PT + +Q+ + +SL HL+G+A
Sbjct: 129 GQMEGGQQMFLSKLAKLEFPKYSGNDPTEWFNKVDQFFEYQGIPAAQKVSLXSFHLEGEA 188
Query: 124 VPWYHWLEQTMGN----MTWAQFKRALVTQFG--TFEDGDAV------------------ 159
W+ WL ++ + WA F+ L +FG ED D
Sbjct: 189 NQWWQWLRRSYSEEGKEVAWADFEEELWARFGPTECEDFDEALSRVKQMSSLRDYQREFE 248
Query: 160 ----GTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIP 215
Q + + F+ L+ +I ++M KP SL + LAR +++ R
Sbjct: 249 KLGNRVQGWTQKALVGTFMGSLKSEIADDIRMFKPKSLKEAIXLARXRDDQLTRQRR--- 305
Query: 216 PRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFN 275
+RP P N T S+P+ P +RL+ E +RRA+GLCFN
Sbjct: 306 ----FTRPLQP--NWPQPDFSTQMKSKPT---------PTMKRLTWEEMQKRRAQGLCFN 350
Query: 276 CDEQFKPGHRCKAPQLLLLDADIEDKDEQAE-------ALEELPETLEVSLKALTGATPQ 328
CD++F GH+C+ PQLLLL+ + E A+ E E E+ ALTG +
Sbjct: 351 CDDKFTVGHKCRGPQLLLLEGNSSPNKEDDIDEEIEEPAINEQTEP-EIFFHALTGWSTP 409
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
TMR+ + +H V +LIDS STH F++ + P T F V VA+G + G+
Sbjct: 410 KTMRITTKIGQHEVVVLIDSGSTHNFISEKVVDMLHLPXVPTDPFTVKVANGTPLKCQGR 469
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
HV V QG F L + LP++G D+VLG +WL LG I+ ++ KLTM+F W+ QT +L
Sbjct: 470 FEHVHVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTIVCNWKKLTMEFQWZNQTHKL 529
Query: 449 TGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
G ++ +A+ +++ L Q + F I +TS
Sbjct: 530 QGTNTQTIQVASLKAVSKELRQGRS--MFAICLQSTS 564
>gi|356511037|ref|XP_003524238.1| PREDICTED: uncharacterized protein LOC100782971 [Glycine max]
Length = 1863
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 208/444 (46%), Gaps = 53/444 (11%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LD G +P IF+ Q+ E + +++A +LDG A+ W+ W+ Q +
Sbjct: 31 KLDVPCFDGHDPLGWIFKISQFFEYQGTPEEERITVASFYLDGAALSWFQWMHQNGFITS 90
Query: 139 WAQFKRALVTQFG-TFEDG----------DAVGTQNLPE-------------SFFISCFL 174
W +A+ T+F +F D A T+ L E +SCF+
Sbjct: 91 WPALLQAIETRFAPSFYDDPRGALFKLTQRASVTEYLTEFERLANRIVGLSPPMLLSCFV 150
Query: 175 SGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTI 234
SGL +I+ VQ +P SL LAR QE+ +++RR R S+ P P SP++
Sbjct: 151 SGLNTEIRREVQAFQPVSLPHAMALARLQED--KLNDRRKHSRTSLPPPQTP----SPSL 204
Query: 235 TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLL 294
T PP PPF + + E RR KGLC+NC+E++ HRCK LL +
Sbjct: 205 TTQHQ---------PPRTKPPFVQRTPEEMAYRREKGLCYNCEEKWSSSHRCKGRVLLFI 255
Query: 295 -DAD---------IEDKDEQAEA----LEELPETLEVSLKALTGATPQNTMRLKGNLKKH 340
D+D +ED +A + P +SL A+ G +T RL G +
Sbjct: 256 ADSDEASSMDNPSMEDPAPPTQATLPPFDPTPLLPHISLHAMAGVPATDTFRLYGVINHT 315
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
VTIL+DS STH F+ +AK G P+ TT QV V +G V+ C + Q
Sbjct: 316 RVTILVDSGSTHNFVQPRIAKFLGLPMEDTTSLQVMVGNGSVLECKQSCPATTLLLQQHS 375
Query: 401 FHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
F + +LP+SG D+VLG EWLR+LG I+ D++ TMQFT GQ + L + A+
Sbjct: 376 FTVTLRVLPISGADVVLGVEWLRTLGPIITDYTSFTMQFTHLGQPIILRADVTTCTDTAS 435
Query: 461 HGEINQLLLQEKQGIFFQIMAITT 484
++ +LL F + + T
Sbjct: 436 AHQVKRLLHTHSLSGLFHLSLLPT 459
>gi|147860532|emb|CAN81876.1| hypothetical protein VITISV_034528 [Vitis vinifera]
Length = 1241
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 139/488 (28%), Positives = 226/488 (46%), Gaps = 61/488 (12%)
Query: 24 LSQQSNDLQELILSLHDQFIRFQE---DRNNNQPLQINNQQPEPAGRIGGA--LVQPRHI 78
L+ + + ++E I L + + +E N++ + N + G + G + +
Sbjct: 8 LTDKXHQMEETIHRLSEALLSNKEXSSSNTNDRNGXVRNNRDNSKGXMEGGQQMFLSKLA 67
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN-- 136
+L+F SG +PT + +Q+ + +SLA HL+G+A W+ WL ++
Sbjct: 68 KLEFPRYSGNDPTEWFNKVDQFFEYQGIPVAQKVSLASFHLEGEANQWWQWLRRSYSEEG 127
Query: 137 --MTWAQFKRALVTQFG--TFEDGDAV----------------------GTQNLPESFFI 170
+ WA F+ L +FG ED D Q + +
Sbjct: 128 KEVXWADFEEELWARFGPTECEDFDEALSRVKQMGSLRDYQREFEKLGNRVQGWTQKALV 187
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR--RIPPRPSMSRPSPPLL 228
F+ GL+ +I ++M KP SL + LAR +++ R R +
Sbjct: 188 GTFMGGLKSEIADXIRMFKPKSLKEAISLARMRDDQLTRQXRFTRPLQPNXPQPBFSTQM 247
Query: 229 NSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKA 288
S PT P +RL+ E +RRA GL FNCD++F GH+C+
Sbjct: 248 KSKPT--------------------PXMKRLTWEEMQKRRAXGLXFNCDDKFTXGHKCRG 287
Query: 289 PQLLLLDAD-IEDKDEQAEALEELPETLE-----VSLKALTGATPQNTMRLKGNLKKHGV 342
PQLLLL+ + I +K++ + E P E +S ALTG + TMR+ + +H V
Sbjct: 288 PQLLLLEGNSIPNKEDDIDEEIEEPAINEQTKPEISFHALTGWSTPKTMRITAKIGQHKV 347
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
+LIDS STH F++ +A PV T F V VA+G + G+ HV V QG F
Sbjct: 348 VVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVANGTPLKCQGRFEHVHVILQGIPFS 407
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHG 462
L + LP++G D+VLG +WL L ++ ++ KLTM+F W+ QT +L G ++ +A+
Sbjct: 408 LTLYSLPLTGLDLVLGVQWLEQLETVVCNWKKLTMEFQWENQTHKLQGTNTQTIQVASLK 467
Query: 463 EINQLLLQ 470
+++ L Q
Sbjct: 468 AVSKELRQ 475
>gi|147838975|emb|CAN68101.1| hypothetical protein VITISV_042364 [Vitis vinifera]
Length = 566
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 140/476 (29%), Positives = 223/476 (46%), Gaps = 58/476 (12%)
Query: 31 LQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRIGGA--LVQPRHIRLDFLVLSGE 88
L E +LS + DRN ++ N + ++GG + + +L+F SG
Sbjct: 8 LSEALLSNKEGSSSNTNDRNG----RVRNNRDNSKKQMGGGQQMFLSKLAKLEFPRYSGN 63
Query: 89 NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN----MTWAQFKR 144
+PT + +Q+ + +SLA HL+G+ W+ WL ++ + WA F+
Sbjct: 64 DPTEWFNKVDQFFEYQGIPAAQKVSLASFHLEGETNQWWQWLRRSYSEEGKEVAWADFEE 123
Query: 145 ALVTQFGTFEDGD---------AVGT---------------QNLPESFFISCFLSGLRED 180
L +FG E D +G+ Q + + F+ GL+ +
Sbjct: 124 ELWARFGPTECEDFDEALSRVKQMGSLRDYQREFEKLGNRVQGWTQKALVGMFMGGLKSE 183
Query: 181 IKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGS 240
I ++M KP SL + LAR +++ R P + P P T
Sbjct: 184 IADDIRMFKPKSLKEAISLARMRDDQLTCQXRFTRPL-QXNXPQPBF--------STQMK 234
Query: 241 SQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIE- 299
S+P+ P +RL+ E +RRA GL FNCD++F GH+C+ PQLLLL+ +
Sbjct: 235 SKPT---------PTMKRLTWEEMXKRRAXGLXFNCDDKFTXGHKCRGPQLLLLEGNSXP 285
Query: 300 DKDEQAEALEELPETLE-----VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
+K+ + E P E +S ALTG + TMR+ + +H V +LIDS STH F
Sbjct: 286 NKENDIDEEIEEPAINEQTEPXISFHALTGWSTPKTMRITTKIAQHEVVVLIDSGSTHNF 345
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ +A PV T F V VA+G + + HV V QG F L + LP++ D
Sbjct: 346 ISEKVAYMLHLPVVPTKPFTVKVANGTPLKCQWRFEHVHVILQGIPFSLTLYSLPLTXLD 405
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQ 470
+VLG +WL LG ++ ++ KLTM+F W+ QT +L G ++ +A+ I++ L Q
Sbjct: 406 LVLGVQWLEQLGTVVCNWKKLTMEFQWENQTHKLQGTNTQTIQVASLKAISKELRQ 461
>gi|89887334|gb|ABD78322.1| polyprotein [Primula vulgaris]
Length = 1359
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/408 (32%), Positives = 204/408 (50%), Gaps = 42/408 (10%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R IRLDF GEN +++ Q+ L ET + +A H +G + WY LE++
Sbjct: 18 RTIRLDFPKFYGENVVEWVYKANQFFSLYQTPETQRIKIANLHFEGQPLVWYQNLEKSDL 77
Query: 136 NMTWAQFKRALVTQFG------------TFEDGDAVG------------TQNLPESFFIS 171
+W + +FG + ++V ++L E ++
Sbjct: 78 ISSWDNLCDQMTKRFGENLNENPLDQLIKLKQRNSVKEYKSDFEIISNRVKDLSEEHKLT 137
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
F+ GL+E+I + V+ML P S+ F +A++QEE + + P + +P N+
Sbjct: 138 YFICGLKEEIGLTVKMLFPKSIETAFSIAKYQEEKLHLEKK--PNFRTFQSQAP---NNQ 192
Query: 232 PTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQL 291
T +KT ++ + LPP +RL+ E T+RR K LC+NCDE++ GH C P++
Sbjct: 193 ATFSKTNNTTAIT-------KLPPIKRLTQDELTDRRQKNLCYNCDEKWFRGHVCVKPKI 245
Query: 292 LLLDADIEDKDEQAE-ALEELPETL-----EVSLKALTGATPQNTMRLKGNLKKHGVTIL 345
LL E ++E E ++EE+ E + E++L+A+TG T ++R G LK V+IL
Sbjct: 246 FLLQNVEEFENEINEESVEEIDENIVGENAEITLQAITGVTNSTSIRFVGKLKGQKVSIL 305
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
+DS STH F++ + +V +A+G I SSG C V + Q QF +DF
Sbjct: 306 VDSGSTHNFIDPKWVPLLKLSNVQSDIMEVKIANGDKIKSSGTCEKVKLLIQENQFEVDF 365
Query: 406 FLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
LLP+ G D+VLG WL LG I DF LTM FT + V L G ++
Sbjct: 366 LLLPLVGYDLVLGVHWLSQLGVINCDFKNLTMTFTHGNKKVCLKGLNN 413
>gi|147784790|emb|CAN75225.1| hypothetical protein VITISV_035856 [Vitis vinifera]
Length = 793
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 140/476 (29%), Positives = 229/476 (48%), Gaps = 61/476 (12%)
Query: 6 LEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPA 65
L++ + ++ +K+ + + + L E +LS ++ DRN ++ N +
Sbjct: 18 LQDGMSRMELGLTDKLHQMEETIHRLSEALLSNKERSSSNTNDRNG----RVRNNRDNSK 73
Query: 66 GRIGGA--LVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDA 123
G++ G + + +L+F SG +PT + +Q+ + +SLA HL+ +A
Sbjct: 74 GQMEGGQQMFLSKLAKLEFPRYSGNDPTEWFNKVDQFFEYQGIPAAQKVSLASFHLEDEA 133
Query: 124 VPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKI 183
W W + +GN ++ALV GT F+ GL+ +I
Sbjct: 134 NQW--WEFEKLGNRVQGWTQKALV------------GT-----------FMGGLKSEIAD 168
Query: 184 GVQMLKPASLLQTFELARFQEEYAAVSNRRIPP-RPSMSRPS-PPLLNSSPTITKTGGSS 241
G++M KP SL + LAR +++ R P +P+ +P + S PT
Sbjct: 169 GIRMFKPKSLKEAISLARMRDDQLTRQRRFTRPLQPNWPQPDFSTQMKSKPT-------- 220
Query: 242 QPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDK 301
P +RL+ E +RRA+GLCFNCD++F GH+C+ QLLLL+ +
Sbjct: 221 ------------PTMKRLTWEEMQKRRAQGLCFNCDDKFTVGHKCRGLQLLLLEENSSPN 268
Query: 302 DEQAE-------ALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
E A+ E E E+S ALTG + TMR+ + +H V +LIDS STH F
Sbjct: 269 KEDDIDEEIEEPAINEQIEP-EISFHALTGWSTPKTMRITAKIGQHEVVVLIDSGSTHNF 327
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ +A PV T F V V +G + G+ HV V QG F L + LP++G D
Sbjct: 328 ISEKVADMLHLPVVPTKPFTVKVVNGTPLKCQGRFEHVHVILQGIPFSLTLYSLPLTGLD 387
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQ 470
+VLG +WL LG ++ ++ KLTM+F W+ QT +L G ++ +A+ +++ L Q
Sbjct: 388 LVLGVQWLEQLGTVVCNWKKLTMEFQWENQTHKLQGTNTQTIQVASLKAVSKELRQ 443
>gi|147842329|emb|CAN76208.1| hypothetical protein VITISV_041623 [Vitis vinifera]
Length = 522
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 210/460 (45%), Gaps = 72/460 (15%)
Query: 21 VEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRIGGALVQPRHIRL 80
++ L N L E++LS + + NN + + Q+ E G + + +L
Sbjct: 22 IQRLEDTVNRLSEILLSTRES----SNNHNNGREGFVRPQREENDS--GRQIFSSKMAKL 75
Query: 81 DFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN---- 136
+F SG +PT R Q+ ++ +SLA HL+ +A W+ WL +
Sbjct: 76 EFPKYSGADPTEWCNRVAQFFEFQDTVDNQKVSLASFHLEREANQWWQWLRRAYQEEDRV 135
Query: 137 MTWAQFKRALVTQFGTFEDGD---------AVGT---------------QNLPESFFISC 172
+TW F+ L +FG E D +G+ + +
Sbjct: 136 VTWELFEEELWARFGPIECEDFDEALSKVRQIGSLRDYQKEFERLGNRVHGWSQKALVGS 195
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPL--LNS 230
F+ GLR +I ++M KP +L + LA ++E RRI SRP P+ L +
Sbjct: 196 FMGGLRSEISETIRMFKPKTLKEATSLAHMKDEQLQ-HQRRI------SRPPLPIRTLLA 248
Query: 231 SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ 290
PT TK +RLS E +RRA+GLCFNCDE+F GHRCK
Sbjct: 249 LPTTTKASH----------------VKRLSWEEMQKRRAQGLCFNCDEKFTSGHRCK--- 289
Query: 291 LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
+ + EA +LP E+SL AL G T TMR+ + H V +LIDS S
Sbjct: 290 ----------EGDTKEAETDLPSDPEISLHALIGWTTTKTMRVTAKIGTHDVVVLIDSGS 339
Query: 351 THIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV 410
TH F++ + PV T F V VA+G + G+ ++ + QG F + F+ LP+
Sbjct: 340 THNFISDKVVALLHLPVVPTAPFHVRVANGQPLKCQGRFDNIHILLQGIPFSITFYSLPL 399
Query: 411 SGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+G D+VLG +WL LG+++ D+ ++TM+F W + L G
Sbjct: 400 NGLDLVLGVQWLEQLGSVVCDWKQMTMEFQWANKPRLLQG 439
>gi|78183241|emb|CAJ00278.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 145/533 (27%), Positives = 239/533 (44%), Gaps = 69/533 (12%)
Query: 2 TIKELEERVEQ-----LSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQ 56
+I+E EER+ ++ E Q N QE + + Q R + P
Sbjct: 10 SIREAEERIMAAMDPCIARHMRELELRFETQFNGFQEAMRGIGLQVTDLASARRSRTPGD 69
Query: 57 INNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
+++ P R RLDF S ++ S I +CE++ L E + +++A
Sbjct: 70 GDHRMPT------------RLTRLDFPKFSKDDVDSWIAKCERFFALDGTPEGERVAVAS 117
Query: 117 GHLDGDAVPWYHWLEQ-TMGNMTWAQFKRALVTQFGT-FE-------------------- 154
+D + W+ LEQ T+G +TW +F AL T+FG FE
Sbjct: 118 IAMDESSFRWFQGLEQGTVGRVTWPEFAAALRTRFGVEFESPMEELKRLVQQGNLEEYHE 177
Query: 155 --DGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR 212
D A T+ L ES + C+L GL ++ GV+M P +LL+ +A+ QE + ++
Sbjct: 178 AFDNLACRTE-LSESLKLQCYLGGLNPELCTGVKMFGPRTLLEAMRIAKLQERSLELLHK 236
Query: 213 R------IPPRPSMSRPSPPLLNSSPTITK--TGGSSQPSLLGPPPPGLPPFRRLSVAEQ 264
+ S + P+ I + ++Q +LG P ++L+ E
Sbjct: 237 KSNSVTKTYSNWSERKGVAPVTVEKKAIERKTVRENNQEGILGKPNYTFQ--KKLTPKEM 294
Query: 265 TERRAKGLCFNCDEQFKPGHRC---KAPQLLLLDADIEDKDEQAEALEE-------LPET 314
E R + LCF C E++ PGH C K Q+ + D + +E E +E+ +P+
Sbjct: 295 DEHRTQNLCFFCHEKYTPGHDCPQRKKSQVFFMAVDGLESEELLEGVEQESRPEVNVPKV 354
Query: 315 L-------EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
+SL AL G + MRL G L K + +LID+ STH F+N L + +
Sbjct: 355 SLNALHGDSISLDALDGDSEYPMMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKI 414
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
++TVADGG+I +G C + QG+ F + +P+S CD++LG +WLR G
Sbjct: 415 KCLQPVKITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGK 474
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIM 480
I WDF+ L M+F + V+L + L +++ ++ ++K QI+
Sbjct: 475 ISWDFTNLIMEFAMGTEMVRLQAMEEKENKLVTAAKLHHMVGEDKFSFLLQIL 527
>gi|147864527|emb|CAN80491.1| hypothetical protein VITISV_042679 [Vitis vinifera]
Length = 1412
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 158/521 (30%), Positives = 241/521 (46%), Gaps = 90/521 (17%)
Query: 4 KELEERVEQLSHQFNEKVEVLSQQSN--------DLQELI--LSLHDQFI---RFQEDRN 50
+E+ + ++ +F K E+ ++S DL+ LI LSL +Q + R +E R
Sbjct: 8 QEVRREMLEMMKEFERKQELWRRESEEKAVKSFADLKSLIGGLSLQNQEVMTNRGEERRW 67
Query: 51 NNQPLQINNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETD 110
NQ +G + ++DF +G + R E + +
Sbjct: 68 ENQ--------------LGHS------TKVDFXKFNGXGLDGWLLRVEYFFEVDRTPPEA 107
Query: 111 VLSLAIGHLDGDAVPWYHWLEQTMGN---MTWAQFKRALVTQFG--TFEDGDA------- 158
+ LA HL+G A+ W+ +T GN + W++ AL +FG F+D A
Sbjct: 108 RVRLAALHLEGKAIQWHQGYIKTRGNEAYLDWSEXVIALNARFGQHVFDDPIADLRNLRQ 167
Query: 159 VGT--------------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
G+ ++ ES +S FLSGL +++ + V+M KP +L + LAR QE
Sbjct: 168 TGSLQSYMDEFDELYPRADIKESHALSFFLSGLIDELXMPVRMFKPQTLADAYSLARLQE 227
Query: 205 -EYAAVSNRRIPPR--PSMSRPSP-------PLLNSSPTITKTGGSSQPS-----LLGPP 249
AA+ N+ P PS+ P+ P+ + S T ++ P LL P
Sbjct: 228 IAVAALQNKPKPVSKGPSLYSPTTNHYHXATPITSISQNATNLSNTTFPKTTNAGLLPLP 287
Query: 250 P--------PGLPP--FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIE 299
P PG+ R S + ERRAKGLCF CDE+F PGH+CK QL ++ +E
Sbjct: 288 PSTNIPKTNPGITTRNHRNFSNRDLDERRAKGLCFWCDEKFTPGHKCKRKQLYVMQIQVE 347
Query: 300 DKDE------QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHI 353
E Q E L E E +++SL AL TM L GN K + +LIDS S+H
Sbjct: 348 TDGEGPEGNLQMEGLXEEDEQIQLSLNALMSNEDSQTMTLNGNYKGRSLFVLIDSGSSHN 407
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
FL+S +AK+ C +VTVA+G + + CS QG +F + ++LP+
Sbjct: 408 FLSSKVAKRVDCCWQKARGIRVTVANGQELHCTALCSDFRWRMQGQEFIAEVYVLPLETY 467
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
D++LG +WL +LG I W+F+ L M F G+ L G + L
Sbjct: 468 DLILGTQWLATLGDISWNFNTLQMGFELNGKPYLLQGKNKL 508
>gi|78183245|emb|CAJ00275.1| hypothetical protein [Lotus japonicus]
Length = 1112
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 147/533 (27%), Positives = 240/533 (45%), Gaps = 69/533 (12%)
Query: 2 TIKELEERVEQ-----LSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQ 56
+I+E EER+ ++ E Q N QE + + Q R + P
Sbjct: 10 SIREAEERIMAAMDPCIARHMRELELRFETQFNGFQEAMRGIGLQVTDLASARRSRTPGD 69
Query: 57 INNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
+++ P R RLDF S ++ S I +CE++ L E + +++A
Sbjct: 70 GDHRMP------------TRLTRLDFPKFSKDDVDSWIAKCERFFALDGTPEGERVAVAS 117
Query: 117 GHLDGDAVPWYHWLEQ-TMGNMTWAQFKRALVTQFGT-FE-------------------- 154
+D + W+ LEQ T+G +TW +F AL T+FG FE
Sbjct: 118 IAMDESSFRWFQGLEQGTVGRVTWPEFAAALRTRFGVEFESPMEELKRLVQQGNLEEYHE 177
Query: 155 --DGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR 212
D A T+ L ES + C+L GL ++ GV+M P +LL+ +A+ QE + ++
Sbjct: 178 AFDNLACRTE-LSESLKLQCYLGGLNPELCTGVKMFGPRTLLEAMRIAKLQERSLELLHK 236
Query: 213 R------IPPRPSMSRPSPPLLNSSPTITK--TGGSSQPSLLGPPPPGLPPFRRLSVAEQ 264
+ S + P+ I + G ++Q +LG P ++L+ E
Sbjct: 237 KSNSVTKTYSNWSERKGVAPVTVEKKAIERKTVGENNQKGILGKPNYTFQ--KKLTPKEM 294
Query: 265 TERRAKGLCFNCDEQFKPGHRC---KAPQLLLLDAD------IEDKDEQAEALE-ELPET 314
E R + LCF C E++ PGH C K Q+ + D + ++ EQ LE +P+
Sbjct: 295 DEHRTQNLCFFCHEKYTPGHDCPQRKKSQVFFMAVDGLESEELLEEVEQESRLEVNVPKV 354
Query: 315 L-------EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
+SL AL G + MRL G L K + +LID+ STH F+N L + +
Sbjct: 355 SLNALHGDSISLDALDGDSEYPMMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKI 414
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
++TVADGG+I +G C + QG+ F + +P+S CD++LG +WLR G
Sbjct: 415 KCLQPVKITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGK 474
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIM 480
I WDF+ L M+F + V+L + L +++ ++ ++K QI+
Sbjct: 475 ISWDFTNLIMEFAMGTEMVRLQAMEEKENKLVTAAKLHHMVGEDKFSFLLQIL 527
>gi|147852240|emb|CAN80132.1| hypothetical protein VITISV_012031 [Vitis vinifera]
Length = 1371
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 204/433 (47%), Gaps = 57/433 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN-- 136
++DF +G + R E + + + LA HL+G A+ W+ +T GN
Sbjct: 76 KVDFPKFNGGGLDGWLLRVEYFFEVDRTPPEARVRLAALHLEGKAIQWHQGYIKTRGNEA 135
Query: 137 -MTWAQFKRALVTQFGTFEDGDAVGT-----------------------QNLPESFFISC 172
+ W+++ AL +FG D + ++ ES +S
Sbjct: 136 YLDWSEYVIALNARFGQHVFBDPIADLRNLRQTGSLQSYMDEFDELYPRADIKESHALSF 195
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQE-EYAAVSNRRIPPR--PSMSRPSP---- 225
FLS L +++++ V+M KP +L + LAR QE AA+ N+ P PS+ P+
Sbjct: 196 FLSXLIDELQMPVRMFKPQTLADAYSLARLQEIAXAALQNKPKPVSKGPSLYSPTTNHYH 255
Query: 226 ---PLLNSSPTITKTGGSSQPS-----LLGPPP--------PGLPPFRRLSVAEQT--ER 267
P+ + S T ++ P LL PP PG+ + + + ER
Sbjct: 256 KATPITSISQNATNLSNTTFPKTTNAGLLPLPPSTNIPKTNPGITTRNHXNFSNRDLDER 315
Query: 268 RAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDE------QAEALEELPETLEVSLKA 321
RAKGLCF CDE+F PGH+CK QL ++ +E E Q E L E E +++SL A
Sbjct: 316 RAKGLCFWCDEKFTPGHKCKRKQLYVMQIQVETDGEGPEGNLQMEGLGEEDEQIQLSLNA 375
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
L TM L GN K + +LIDS S+H FL+S +AK+ C +VTVA+G
Sbjct: 376 LMSNEDSQTMTLNGNYKGRSLFVLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGH 435
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
+ + CS QG +F + ++LP+ D++LG +WL +LG I W+F+ L M F
Sbjct: 436 ELHCTALCSDFRWRMQGQEFIAEVYVLPLETYDLILGTQWLATLGDISWNFNTLQMGFEL 495
Query: 442 KGQTVQLTGYDSL 454
G+ L G + L
Sbjct: 496 NGKPYLLQGKNKL 508
>gi|27764548|gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 148/493 (30%), Positives = 231/493 (46%), Gaps = 65/493 (13%)
Query: 8 ERVEQLSHQFNEKVEVLSQQSNDLQ-ELILSLHDQFIRFQEDRNNNQPLQ---INNQQPE 63
ER+E +H EK+EV+ Q +ND Q + ++ Q ++ R N P+ +N Q E
Sbjct: 33 ERLEATNHAQMEKIEVM-QSTNDSQFSQLNAVMSQVLQ----RLQNIPMSSHGASNSQKE 87
Query: 64 PAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDA 123
+ Q R ++LDF G+N IF+ EQ+ A + D L +A HLD D
Sbjct: 88 QQR----SSFQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDV 143
Query: 124 VPWYHWLEQTMGNMTWAQFKRALVTQFG---------TFEDGDAVGTQN----------- 163
VPWY L++T +W F RAL FG T + T N
Sbjct: 144 VPWYQMLQKTEPFSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVN 203
Query: 164 ----LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELAR-FQEEYAA------VSN- 211
L + CF+SGL+E+I V+ ++P +L + LA+ F+E+Y + SN
Sbjct: 204 RVDGLSAEAILDCFVSGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNL 263
Query: 212 -RRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPF-------RRLSVAE 263
R S ++ PP T K P P PF +++S AE
Sbjct: 264 ARNFTSNTSATQKYPP------TNQKNDNPKPNLPPLLPTPSTKPFNLRNQNIKKISPAE 317
Query: 264 QTERRAKGLCFNCDEQFKPGHRCKAPQLLLL---DADIEDKDEQAEALEEL---PETLEV 317
RR K LC+ CDE+F P H+C Q++LL + D + DEQ EE +T +
Sbjct: 318 IQLRREKNLCYFCDEKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEANMDDDTHHL 377
Query: 318 SLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTV 377
SL A+ G+ T+R G + V IL+D S+ F+ +A+ PV +V V
Sbjct: 378 SLNAMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLV 437
Query: 378 ADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTM 437
+G ++S+ G +P++ QG + + +LL +SG D++LG+ WL +LG + D++ LT+
Sbjct: 438 GNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTL 497
Query: 438 QFTWKGQTVQLTG 450
+F + + L G
Sbjct: 498 KFFQNDKFITLQG 510
>gi|62734405|gb|AAX96514.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 575
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 194/413 (46%), Gaps = 34/413 (8%)
Query: 75 PRHIRLDFLVL-SGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +L+F S E+P + CEQ+ R L+ D + LA HL GDA WY EQ
Sbjct: 125 PRFYKLEFPKYDSKEDPLNWFNHCEQFFRGQKTLDGDRVWLATYHLTGDAQEWYFHYEQH 184
Query: 134 MG---------NMTWAQFKR----ALVTQFGT-FEDGDAVGTQNLPESFFISCFLSGLRE 179
G + + KR + V + T F + T+ L +S I F +GLRE
Sbjct: 185 HGPRLFGPPIHRNSLGELKRLSQTSSVAAYQTKFLALASRTTEPLMDSQQIQLFTAGLRE 244
Query: 180 DIKIGVQMLKPASLLQTFELARFQEEYA---AVSNRRIPPRPSMSRPSPPLLNSSPTITK 236
++ I V++ +P L + LAR E A A R P S P+ L ++P T
Sbjct: 245 ELAIDVELHQPDDLQEAMGLARAYERKASRLASGTRPALRAPFRSGPAAANLPTAPAATT 304
Query: 237 TGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA 296
G Q FRRLS AE ERR +GLC+NCDE+F GH+C + D
Sbjct: 305 EGSQEQAPR---------QFRRLSPAELAERRCQGLCYNCDEKFVRGHKCARLFYIEYDD 355
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
++E +E P+ VSL L G NTMRL + V L+DS STH F++
Sbjct: 356 NVEGD------MEPAPDEPRVSLNVLAGLDGANTMRLPVEIAGERVVALVDSGSTHNFIH 409
Query: 357 SSLAKQYGCPVTTTTQ-FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDI 415
+ LA+ ++ V VA+G + S G+C+++ + +G F +D F L +S DI
Sbjct: 410 TELARHLCLHLSPVRHDLYVVVANGDRLVSPGRCANLRLRIEGKLFTVDCFALDISTVDI 469
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLL 468
+LG EWL +LG ILWDF + M + V L G + P E LL
Sbjct: 470 ILGTEWLSTLGPILWDFRNMRMSIWRSTREVTLHGLANRRPPHCEMLETEDLL 522
>gi|78183249|emb|CAJ00277.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 144/533 (27%), Positives = 235/533 (44%), Gaps = 69/533 (12%)
Query: 2 TIKELEERVEQ-----LSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQ 56
+I+E EER+ ++ E Q N QE + + Q R + P
Sbjct: 10 SIREAEERIMAAMDPCIARHMRELELRFETQFNGFQEAMRGIGLQVTDLASARRSRTPGD 69
Query: 57 INNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
+++ P R RLDF S ++ S I +CE++ L E + +++A
Sbjct: 70 GDHRMPT------------RLTRLDFPKFSKDDVDSWIAKCERFFALDGTPEGERVAVAS 117
Query: 117 GHLDGDAVPWYHWLEQ-TMGNMTWAQFKRALVTQFGT-FE-------------------- 154
+D + W+ LEQ T+G +TW +F AL T+FG FE
Sbjct: 118 IAMDESSFRWFQGLEQGTVGRVTWPEFAAALRTRFGVEFESPMEELKRLVQQGNLEEYHE 177
Query: 155 --DGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR 212
D A T+ L ES + C+L GL ++ GV+M P +LL+ +A+ QE + ++
Sbjct: 178 AFDNLACRTE-LSESLKLQCYLGGLNPELCTGVKMFGPRTLLEAMRIAKLQERSLELLHK 236
Query: 213 R------IPPRPSMSRPSPPLLNSSPTITK--TGGSSQPSLLGPPPPGLPPFRRLSVAEQ 264
+ S + P+ I + ++Q +LG P ++L+ E
Sbjct: 237 KSNSVTKTYSNWSERKGVAPVTVEKKAIERKTVRENNQEGILGKPNYTFQ--KKLTPKEM 294
Query: 265 TERRAKGLCFNCDEQFKPGHRC---KAPQLLLL--DADIEDKDEQAEALEELPETL---- 315
E R + LCF C E++ PGH C K Q+ + D ++ + E PE
Sbjct: 295 DEHRTQNLCFFCHEKYTPGHDCPQRKKSQVFFMAVDGLESEELLEEVEQESRPEVNVPKV 354
Query: 316 --------EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
+SL AL G + MRL G L K + +LID+ STH F+N L + +
Sbjct: 355 SLNALHGDSISLDALDGDSEYPMMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKI 414
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
++TVADGG+I +G C + QG+ F + +P+S CD++LG +WLR G
Sbjct: 415 KCLQPVKITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGK 474
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIM 480
I WDF+ L M+F + V+L + L +++ ++ ++K QI+
Sbjct: 475 ISWDFTNLIMEFAMGTEMVRLQAMEEKENKLVTAAKLHHMVGEDKFSFLLQIL 527
>gi|78183243|emb|CAJ00274.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 144/533 (27%), Positives = 235/533 (44%), Gaps = 69/533 (12%)
Query: 2 TIKELEERVEQ-----LSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQ 56
+I+E EER+ ++ E Q N QE + + Q R + P
Sbjct: 10 SIREAEERIMAAMDPCIARHMRELELRFETQFNGFQEAMRGIGLQVTDLASARRSRTPGD 69
Query: 57 INNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
+++ P R RLDF S ++ S I +CE++ L E + +++A
Sbjct: 70 GDHRMPT------------RLTRLDFPKFSKDDVDSWIAKCERFFALDGTPEGERVAVAS 117
Query: 117 GHLDGDAVPWYHWLEQ-TMGNMTWAQFKRALVTQFGT-FE-------------------- 154
+D + W+ LEQ T+G +TW +F AL T+FG FE
Sbjct: 118 IAMDESSFRWFQGLEQGTVGRVTWPEFAAALRTRFGVEFESPMEELKRLVQQGNLEEYHE 177
Query: 155 --DGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR 212
D A T+ L ES + C+L GL ++ GV+M P +LL+ +A+ QE + ++
Sbjct: 178 AFDNLACRTE-LSESLKLQCYLGGLNPELCTGVKMFGPRTLLEAMRIAKLQERSLELLHK 236
Query: 213 R------IPPRPSMSRPSPPLLNSSPTITK--TGGSSQPSLLGPPPPGLPPFRRLSVAEQ 264
+ S + P+ I + ++Q +LG P ++L+ E
Sbjct: 237 KSNSVTKTYSNWSERKGVAPVTVEKKAIERKTVRENNQEGILGKPNYTFQ--KKLTPKEM 294
Query: 265 TERRAKGLCFNCDEQFKPGHRC---KAPQLLLL--DADIEDKDEQAEALEELPETL---- 315
E R + LCF C E++ PGH C K Q+ + D ++ + E PE
Sbjct: 295 DEHRTQNLCFFCHEKYTPGHDCPQRKKSQVFFMAVDGLESEELLEEVEQESRPEVNVPKV 354
Query: 316 --------EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
+SL AL G + MRL G L K + +LID+ STH F+N L + +
Sbjct: 355 SLNALHGDSISLDALDGDSEYPMMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKI 414
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
++TVADGG+I +G C + QG+ F + +P+S CD++LG +WLR G
Sbjct: 415 KCLQPVKITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGK 474
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIM 480
I WDF+ L M+F + V+L + L +++ ++ ++K QI+
Sbjct: 475 ISWDFTNLIMEFAVGTEMVRLQAMEEKENKLVTAAKLHHMVGEDKFSFLLQIL 527
>gi|356569674|ref|XP_003553022.1| PREDICTED: uncharacterized protein LOC100788433 [Glycine max]
Length = 1433
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 202/457 (44%), Gaps = 60/457 (13%)
Query: 77 HIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN 136
H+++D G +P IF+ Q E + ++LA +LDG A+ WY W+ +
Sbjct: 60 HVKIDVPRFDGSDPVGWIFKITQLFEYQGTPEEERVTLASFYLDGPALSWYQWMFRNGFI 119
Query: 137 MTWAQFKRALVTQFG-TFEDGDA--------VGTQN---------------LPESFFISC 172
+W+ F +AL ++F T+ D G+ N LP F +SC
Sbjct: 120 TSWSSFLQALESRFAPTYYDDPKGALFKLTQTGSVNDYLIEFERLANRIFGLPPPFLLSC 179
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSP 232
F+SGL DI+ V L+P S Q LA+ QE+ R ++ +P + P
Sbjct: 180 FVSGLAPDIRREVLALQPISFPQATALAKLQEDKLRDRPRPPRHPNTIPHIAP----AHP 235
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL 292
T + F + + +E RR +GLC+NCD+++ H CK LL
Sbjct: 236 TTFPSPLPPPRPKPP--------FTQRTPSEIAYRRERGLCYNCDDKWSASHHCKGRVLL 287
Query: 293 LL-DADIEDKDEQAEA-----------------LEELPE------TLEVSLKALTGATPQ 328
L+ D D D + +E L+ +P+ T +SL AL+G
Sbjct: 288 LIADPDTPDNPDNSEPPFNSPAPSLPASTPPTDLDPIPDPDLPFPTPHISLNALSGLPTP 347
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
T RL G + +T+LIDS STH FL LA P T +V V +G V++ +
Sbjct: 348 ETFRLFGYINHTRITVLIDSGSTHNFLQPRLATFLHLPTVPTNPLRVLVGNGAVLTCTHL 407
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
C ++ Q F L F LLP+SG D++LG +WL+ LG I D++ L M+F GQ V+L
Sbjct: 408 CPDTTISLQSHHFTLTFHLLPISGADVILGIQWLKLLGPITTDYTSLIMKFHHLGQPVEL 467
Query: 449 TGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
P + +I +++ F + + S
Sbjct: 468 HVDADHGPHPISATQIKRMIQTNATSALFHLCVLPAS 504
>gi|387965727|gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
Length = 1631
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/464 (28%), Positives = 208/464 (44%), Gaps = 66/464 (14%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
RH +LD +P I R E++ L + + + A+ ++GDA+ WY W +
Sbjct: 173 RHKKLDMPAFDDTDPDGWILRGERFFAFYGLTDAEKMEAAVVAMEGDALRWYQWENKRRP 232
Query: 136 NMTWAQFKRALVTQFGTFEDGD------------------------AVGTQNLPESFFIS 171
W K ++TQF G A +PE +
Sbjct: 233 FRNWESMKSFVLTQFRPLNVGSLHEQWLSTTQTASVWEYRRKFVETAAPLDGIPEEILMG 292
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSN-RRIPPRP---SMSRPSPPL 227
F+ GL +++ +++L P +L Q ELA EE V+ RR PR S+ P
Sbjct: 293 KFIHGLNPELQSEIRVLNPYNLDQAMELALKLEERNRVNGARRTGPRSGSFSIYNRGP-- 350
Query: 228 LNSSPTITKTGGS-----------------SQPSLLGPPPP-----GLPPFRRLSVAEQT 265
NS+P++ GS SQ S+ PP G RRL+ E
Sbjct: 351 -NSNPSLPSVYGSQGGSNASTKSWAINSNASQTSVNNAKPPPLSSRGFGEMRRLTEKELQ 409
Query: 266 ERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEAL----------EELPETL 315
E+RAKGLCF CDE++ GH+C+ +L +L + ++DE AL EE+P
Sbjct: 410 EKRAKGLCFKCDEKWGVGHQCRRKELSVLFMEDNEEDELEGALSGSEAPPSPTEEIPP-- 467
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
EVSL ++ G + TM+L G + H V ++ID +TH FL+ + G PVT + +F V
Sbjct: 468 EVSLNSVIGLSNPKTMKLSGLIDNHEVVVMIDPGATHNFLSLKAIDKLGIPVTESEEFGV 527
Query: 376 TVADGGVISSSGKCSHVPVN-SQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
++ DG + +G C V + G DF L + D++LG +WL +LG ++ ++
Sbjct: 528 SLGDGQAVRGTGICRAVALYLDGGLVVVEDFLPLGLGNSDVILGVQWLETLGTVVSNWKT 587
Query: 435 LTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQ 478
M F G LTG +L + + + + L +E G++ +
Sbjct: 588 QKMSFQLGGVPYTLTGDPTLARSKVSLKAMLRTLRKEGGGLWLE 631
>gi|224109270|ref|XP_002333289.1| predicted protein [Populus trichocarpa]
gi|222835888|gb|EEE74309.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 163/344 (47%), Gaps = 48/344 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN-- 136
+L+F + SG +PT R +Q+ ET +SLA HL G+A W+ WL + +
Sbjct: 89 KLEFPIYSGNDPTEWFNRVDQFFEYQGTAETQKMSLASFHLQGEANQWWQWLRRAYKDED 148
Query: 137 --MTWAQFKRALVTQFG--TFEDGDAV----------------------GTQNLPESFFI 170
+TW F+ L +FG ED D Q + +
Sbjct: 149 REVTWPIFEEELWARFGPPECEDFDEALLRVRQGGSLREYQREFERLGNRVQGWTQKALV 208
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
F+ GL+ DI G+ M KP SL + LAR ++E R P S P+ +
Sbjct: 209 GTFMGGLKPDIAEGIMMFKPKSLKEAISLARMRDEQLTRQRRNSKP---FSINHNPIASF 265
Query: 231 SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ 290
SPT + P P +RL+ E +RR++G+CFNCDE+F PGH+C+ P+
Sbjct: 266 SPTKS---------------PAAMPMKRLAWDEMQKRRSQGICFNCDEKFTPGHKCQKPR 310
Query: 291 LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
LLLL+ D E + E E + ++SL A+TG + TMR+ ++ +T+LIDS S
Sbjct: 311 LLLLEGDDETSLQDDEEFE--GDEPQISLHAITGWSIARTMRIMARIENQDLTVLIDSGS 368
Query: 351 THIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPV 394
TH F++ +A PV T F V VA+G + G+ ++ V
Sbjct: 369 THNFISERIANWLHLPVIPTQPFNVKVANGNPLKCQGRFENIHV 412
>gi|18568267|gb|AAL75999.1|AF466646_7 putative polyprotein [Zea mays]
Length = 2749
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 190/445 (42%), Gaps = 78/445 (17%)
Query: 63 EPAGRIG---GALVQPRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGH 118
EPA +G A PR+ ++DF G +P + + +CEQ+ R L TD LA H
Sbjct: 453 EPAAGLGYSPAAQTPPRYYKIDFPTYDGSVDPLNWLNQCEQFFRGQRTLVTDRTWLASYH 512
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVG------------------ 160
L G A WY+ LEQ G TW +FK +FG G +
Sbjct: 513 LKGAAQTWYYALEQDEGMPTWGRFKEVCTLRFGPPVRGTRLSELARLPFTSTVQDYADRF 572
Query: 161 ------TQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI 214
T+ L F+ GL + I+ V + P L LAR E+ AA
Sbjct: 573 NAMLGHTRKLDAQQKAELFVGGLPDHIRADVAIRDPQDLQSAMYLARAFEQRAAA----- 627
Query: 215 PPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPP----------------GLPPFRR 258
++P + S+P L PP P PFRR
Sbjct: 628 --------------QTTPPPARGFRQSRPGLPAPPRPLTAPPTAAAQPAGTAAPARPFRR 673
Query: 259 LSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAE-------ALEEL 311
L+ AEQ ERR +GLCFNCDE + GH C P+L L+ D DE E ALE+
Sbjct: 674 LTPAEQQERRRQGLCFNCDEPYVRGHVC--PRLFYLENDDYIDDEPQEEGADLQIALEQE 731
Query: 312 PETLE------VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
P + VSL AL G N M L ++ H + L+DS ST F++ L +
Sbjct: 732 PPSRAAAIIPTVSLHALAGVRTPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMSRLQL 791
Query: 366 PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSL 425
P T +V VA+G I G V + QF +D L + D++LG E+LR L
Sbjct: 792 PSTPHPTIKVQVANGDNIPCQGMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEFLRLL 851
Query: 426 GAILWDFSKLTMQFTWKGQTVQLTG 450
G ILWD +L+M FT G+ + +G
Sbjct: 852 GPILWDCDRLSMSFTKGGRHIIWSG 876
>gi|12322008|gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis
thaliana]
gi|10998138|dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1499
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 194/412 (47%), Gaps = 47/412 (11%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNM- 137
++DF G +F+ E++ + + E + +A H D A W+ Q+ +
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 138 ---TWAQFKRALVTQF-----------GTFEDGDAV-----------GTQNLPESFFISC 172
W + + L +F ++ D + NL E + +S
Sbjct: 171 VLYDWKGYVKLLKERFEDDCDDPMAELKHLQETDGIIDYHQKFELIKTRVNLSEEYLVSV 230
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSP 232
+L+GLR D ++ V+M +P ++ L + E + P +P+ + S S+P
Sbjct: 231 YLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYE-------KAHPKKPANTTWSTN--RSAP 281
Query: 233 T----ITKTGGSSQPSLLGP----PPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH 284
T + G S+ G P P +++S E ++RR+KGLC+ CDE++ P H
Sbjct: 282 TGGYNKYQKEGESKTDHYGNKGNFKPVSQQP-KKMSQQEMSDRRSKGLCYFCDEKYTPEH 340
Query: 285 RC--KAPQLLLLDADIEDKDEQAEALEELPETL-EVSLKALTGATPQNTMRLKGNLKKHG 341
K QL +D D E +D + E + + E + ++S+ A++G TMR+KG K
Sbjct: 341 YLVHKKTQLFRMDVDEEFEDAREELVNDDDEHMPQISVNAVSGIAGYKTMRVKGTYDKKI 400
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
+ ILIDS STH FL+ + A + GC V T +V+VADG + GK + Q F
Sbjct: 401 IFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDFSWKLQTTTF 460
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
D L+P+ G D+VLG +WL +LG I W+F KL M+F + Q V L G S
Sbjct: 461 QSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTS 512
>gi|147841216|emb|CAN64356.1| hypothetical protein VITISV_020633 [Vitis vinifera]
Length = 1852
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 123/196 (62%), Gaps = 2/196 (1%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA--DIEDKDEQAEALEELPET 314
+RL E +RRA+GLCFNC+E+F PGH+C+ P+LLL++ +++DK+E+A + +
Sbjct: 192 KRLGWEEMQKRRAQGLCFNCNERFTPGHKCQGPRLLLIEGHDEVQDKEEEAXISDNREDE 251
Query: 315 LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
LEVS+ AL G TMR+ +K + +LIDS STH FL+ +A+ PV T F
Sbjct: 252 LEVSIHALXGWASPRTMRVAATIKSQPIMVLIDSGSTHNFLSDKVARTLRLPVVPTKSFT 311
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
V VA+G + G+ VP++ QG F L + LP++G D+VLG +WL LG+++ ++
Sbjct: 312 VHVANGERLLCQGRFEKVPIDLQGIPFSLTCYSLPLAGLDMVLGIQWLXMLGSVVCNWQY 371
Query: 435 LTMQFTWKGQTVQLTG 450
LTM F W+ Q +L G
Sbjct: 372 LTMDFNWENQARRLQG 387
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 19 EKVEVLSQQ----SNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRIGGAL-- 72
E++E+L Q +++Q L L ++D+ R +E + ++++ +P+
Sbjct: 6 ERIEILEQGVGGLQDEVQRLGLGMNDRMQRLKESLKALSDVVLSSKAAQPSHSSHSVKQG 65
Query: 73 ----------------VQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
+ P +++F +G++PT R Q+ E +SLA
Sbjct: 66 HTPQYQHEETESSRLNIPPLRTKIEFPRFAGDDPTEWFNRVAQFFEFQRTPEDQKVSLAA 125
Query: 117 GHLDGDAVPWYHWLEQT 133
H++G+A W+ WL +T
Sbjct: 126 FHMEGEANQWWQWLNRT 142
>gi|387169525|gb|AFJ66186.1| hypothetical protein 11M19.5 [Arabidopsis halleri]
Length = 1557
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 204/481 (42%), Gaps = 67/481 (13%)
Query: 52 NQPLQINNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDV 111
+PL+ + P G I R ++ F G ++RCEQ+ L
Sbjct: 155 KRPLEEDRATVHPNGLIT------RLSKVGFPSFDGNGLRGWLYRCEQFFSLDGTPPEMR 208
Query: 112 LSLAIGHLDGDAVPWYHWLEQTMGNM--TWAQFKRALVTQFGTFED------------GD 157
+ A H++G A+ W+H + +M +W+++ L +F D GD
Sbjct: 209 VRYASMHMEGKALEWHHNYMRDRFDMFPSWSEYVVDLSARFAELVDDPLAELVNVKQGGD 268
Query: 158 AVGT-----------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEY 206
+V +LP +S FL+ L + + + K ++ + +A+ E
Sbjct: 269 SVEVFWEKFECARTRLSLPMPHALSIFLTNLNPHLALQARQFKVTTVTEAARIAKLHESA 328
Query: 207 AAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPP-----PPGLP------- 254
+ + P R S S P N+ P S+ +LL P P LP
Sbjct: 329 LLQTPTKPPQRAPFSPYSKP--NNQPY---NKSSNTTALLPTPRFTENPKTLPYKPNNTN 383
Query: 255 -PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK--APQLLLL-------------DADI 298
P R+ + E ERR KGLC CDE + PGH K Q+ ++ +A +
Sbjct: 384 KPTRKFTYDEMQERRTKGLCMFCDEPYTPGHHLKHRKSQIFVMECEEDDLDDEQEVNATV 443
Query: 299 EDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSS 358
E++D EE P +S AL G+T N MRL G KH + I +D STH F++
Sbjct: 444 EEEDAVVNPNEEQPT---ISANALNGSTTFNCMRLMGQYGKHKLHIFVDPGSTHNFIDIK 500
Query: 359 LAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLG 418
+AK+ C + T V A GG + + QG+ F + LP+ DIVLG
Sbjct: 501 VAKEINCKLEGTRPMTVDAALGGKTVTLFRSKDFTWRMQGYSFTTEVRTLPLDHWDIVLG 560
Query: 419 AEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQ 478
+WL +LG ILWDF+ L M+FT G L G + ++N++L QE Q F Q
Sbjct: 561 VQWLATLGPILWDFTYLRMEFTLNGAKYILRGTAKAGCKVIKGNKLNKILSQEPQVAFLQ 620
Query: 479 I 479
+
Sbjct: 621 L 621
>gi|218197921|gb|EEC80348.1| hypothetical protein OsI_22431 [Oryza sativa Indica Group]
Length = 402
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 152/286 (53%), Gaps = 19/286 (6%)
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE---EYAAVSNRRI---PPRPSMSRP 223
++ +GL + + I V++ PA L LAR E E AV+ RI R +S
Sbjct: 4 VNLLTTGLGKPLSIDVELQNPADLQAAMSLARSYEQRLEDDAVAAPRIVENKQRSVLSFR 63
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPP-----FRRLSVAEQTERRAKGLCFNCDE 278
S P +P+ + SS +++ P P FRRLS AE E R KGLCFNC E
Sbjct: 64 SAPAPVPAPSRVGSSMSSSAAIVASKSPTRPGTTGTRFRRLSAAEMAECREKGLCFNCPE 123
Query: 279 QFKPGH--RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGN 336
+F H +C + LL+ D + D+ +T+ +SL ALTG TMRL
Sbjct: 124 KFSKDHHRQCSMKGIYLLEMDEGEDDDSIN-----DDTVTISLHALTGIRTSKTMRLAVI 178
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNS 396
+ ++ L+DS STH F+ + A++ G TT + V VA+G ++SSG CS +P+
Sbjct: 179 IGGVTMSALVDSGSTHTFVATEAARRLGLSPTTKSGLNVMVANGDQVTSSGICSGIPIKI 238
Query: 397 QGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
F +D +++P+ G D+VLG +WLR+LG ILWDF KLTM F W+
Sbjct: 239 DSEDFIIDCYVIPLEGYDVVLGVQWLRTLGPILWDFDKLTMSF-WR 283
>gi|242093834|ref|XP_002437407.1| hypothetical protein SORBIDRAFT_10g026363 [Sorghum bicolor]
gi|241915630|gb|EER88774.1| hypothetical protein SORBIDRAFT_10g026363 [Sorghum bicolor]
Length = 1609
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 190/425 (44%), Gaps = 52/425 (12%)
Query: 62 PEPAGRIGGALVQPRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLD 120
P P G V P++ +L F G E+P + +CEQ+ TD + LA HL
Sbjct: 219 PAPDGH-----VVPKYHKLTFPTFDGKEDPLGWLNKCEQFFNGHQTRHTDRVWLASYHLT 273
Query: 121 GDAVPWYHWLEQTMGNMTWAQFKRALVTQFGT-FEDGDAVGTQNLPESFFISCFL----- 174
G A WY LE G W +F+ +FG LP + + ++
Sbjct: 274 GVAQQWYLVLEADSGRPQWEEFRTLCHQRFGPPLSTNHLSDLARLPFTSTVDAYMEAFQA 333
Query: 175 ------------------SGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPP 216
GL I++ V++ P L + LAR E RR P
Sbjct: 334 RAAHAGRLSPGQKAKLFTGGLPHHIRVDVELHDPQDLQRAMYLARAYE-------RRNTP 386
Query: 217 RPSMSRPSPPLLNSSPTITKTGGSSQPSLLGP-PPPGLPPFRRLSVAEQTERRAKGLCFN 275
P P +S T T G +Q PP L F+RL+ E ERR +GLC+N
Sbjct: 387 APLALPAPPRRRPTSTTSTPAGAVTQAESSSSSAPPRL--FKRLTPDEMAERRKQGLCYN 444
Query: 276 CDEQFKPGHRCKAPQLLLLDA------DIEDKDE-QAEALEELPETLE---VSLKALTGA 325
CDE + GH+C +L L+ + ED D + E+ P + +SL A+TG
Sbjct: 445 CDEPYVRGHKCA--RLFFLEVTDYIVEEPEDTDSGSTQPAEDAPYDTDKPLISLSAITGI 502
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
TM+L+ ++ H +T L+DS STH F++S+ A + G + VTVA+G +
Sbjct: 503 RAHETMQLRVHVGPHELTALLDSGSTHNFISSAAAHRAGLHFKDSEGAHVTVANGDRVLC 562
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQT 445
G V + F +D + +P+ CD+VLG WLR+LG ILWDF L M+F+ G+
Sbjct: 563 RGLARGVNLQIGMEVFKVDCYAIPLDSCDMVLGIAWLRTLGPILWDFDNLRMEFSLHGRR 622
Query: 446 VQLTG 450
VQ G
Sbjct: 623 VQWRG 627
>gi|12322948|gb|AAG51464.1|AC069160_10 gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
Length = 1447
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/440 (27%), Positives = 198/440 (45%), Gaps = 76/440 (17%)
Query: 45 FQEDRNNNQPLQINNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLA 104
FQ D Q N Q R+G ++DF G +F+ E++ +
Sbjct: 91 FQRDFRPEMVRQEVNNQYGNLTRLG---------KIDFPRFDGSRINEWLFKVEEFFGVD 141
Query: 105 ALLETDVLSLAIGHLDGDAVPWYH-WLEQTMG---NMTWAQFKRALVTQF---------- 150
E + + H D A W+H +++ +G W ++ + L +F
Sbjct: 142 FTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNWPEYVKLLKDRFEDACDDPMAE 201
Query: 151 -GTFEDGDAVGTQ-----------NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFE 198
++ D + NL E + +S +L+GLR D ++ V+M +P ++
Sbjct: 202 LKKLQETDGIVEYHQQFELIKVRLNLSEEYLVSVYLAGLRTDTQMHVRMFEPKTVRDCLR 261
Query: 199 LARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRR 258
L ++ E R P+ ++S S T++GGS +P
Sbjct: 262 LGKYYE--------RAHPKKTVSS------TWSQKGTRSGGSYRP--------------- 292
Query: 259 LSVAEQTERRAK--GLCFNCDEQFKPGHRC--KAPQLLLLDADIEDKDEQAEAL----EE 310
++ E+++ GLC+ CDE+F P H K QL +D D E+ ++ E L E
Sbjct: 293 ---VKEVEQKSDHLGLCYFCDEKFTPEHYLVHKKTQLFRMDVD-EEFEDAVEVLSDDDHE 348
Query: 311 LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
++S+ A++G + TM +KG + K + ILIDS STH F++S++A + GC V +
Sbjct: 349 QKPMPQISVNAVSGISGYKTMGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESA 408
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILW 430
+V VADG ++ G+ Q F D L+P+ G D+VLG +WL +LG I W
Sbjct: 409 GLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISW 468
Query: 431 DFSKLTMQFTWKGQTVQLTG 450
+F KL MQF +K Q V L G
Sbjct: 469 EFKKLEMQFFYKNQRVWLHG 488
>gi|147854459|emb|CAN78588.1| hypothetical protein VITISV_043911 [Vitis vinifera]
Length = 2232
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 194/414 (46%), Gaps = 41/414 (9%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
R++ V +GENP IFR ++Y L E + L A LDGDA+ WY W + +
Sbjct: 772 RVEMPVFTGENPDGWIFRADRYFATYGLTEEEKLVAAAMSLDGDALSWYQWTDSREVFGS 831
Query: 139 WAQFKR------------ALVTQFGTFEDGDAVGT------------QNLPESFFISCFL 174
W KR +L QF V + + E S F+
Sbjct: 832 WENLKRRLLLRFRLTQEGSLCEQFLAVRQQGTVAAYWREFEILETPLKGISEEVMESTFM 891
Query: 175 SGLREDIKIGVQMLKPASLLQTFELA-RFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPT 233
+GL +I+ ++L+P L E+A R ++ A+ R P P + + L ++
Sbjct: 892 NGLLPEIRAEQRLLQPYGLGHLMEMAQRVEDRNLAMRAAREPNGP---KSTKMLSTANRG 948
Query: 234 ITKTGGSSQPSLLGPPPPGLP-----PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKA 288
K G + Q + + P +RL+ +E RR KGL F C+E+F PGHRCK
Sbjct: 949 EWKIGENFQTRAVAVGEKTMSQRREIPIKRLTESELQARREKGLWFKCEEKFSPGHRCKK 1008
Query: 289 P-QLLLLDADIEDKDEQAE-------ALEELPETLEVSLKALTGATPQNTMRLKGNLKKH 340
++LL+ D E+ D Q + AL EL + +E+SL ++ G T TM++KG +
Sbjct: 1009 ELRVLLVHEDEEEDDNQFDDRATEEPALIELKDAVELSLNSVVGLTTPGTMKIKGTIGSK 1068
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
V IL+DS +TH FL+ L +Q P+TTTT + V + G + G C V ++ QG
Sbjct: 1069 EVIILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLT 1128
Query: 401 FHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
DF L + D++LG WL +LG + ++ LTM+ + L G SL
Sbjct: 1129 VVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVMVLKGDPSL 1182
>gi|449470598|ref|XP_004153003.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 1049
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 201/461 (43%), Gaps = 61/461 (13%)
Query: 74 QPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
+ ++ +L+ + GENP S ++R E + + L ET+ + +A+ D V WY W
Sbjct: 63 RSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVSFGQDEVDWYRWSHNR 122
Query: 134 MGNMTWAQFKRAL------------------VTQFGTFED------GDAVGTQNLPESFF 169
+W K + + Q G++ D + ++ ES
Sbjct: 123 RKVESWEDLKERMFDFFKDTGQKSLVARLIRIEQDGSYNDYVKKFVNYSAPLPHMTESVL 182
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMS-------R 222
FL+GL +++ V P +L + A+ V++R + + S + +
Sbjct: 183 RDAFLTGLEPNLQAEVVSRNPLTLEECMREAQL------VNDRNLALQWSKAEGGGRNYK 236
Query: 223 PSPPLLNSSPTITKTGGSSQPS---------LLGPPPPGLPPFRRLSVAEQTERRAKGLC 273
N P + G + + + G PP +RLS AE R KGLC
Sbjct: 237 KGEGSTNKGPEGGEKGITRKTEFPLKQVTIPIKGNYQKSEPPVKRLSDAEFRARLDKGLC 296
Query: 274 FNCDEQFKPGHRCKAP---QLLLL----DADIEDKDEQAEALEE--------LPETLEVS 318
F C+E++ PGHRCK +L+L + +ED+D E EE L E E+
Sbjct: 297 FKCNERYSPGHRCKMKDKRELMLFIMNEEESLEDEDRTEETNEEVLELNQLTLEEGTEIE 356
Query: 319 LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVA 378
LKA+ G T + TM++KG +K V ILIDS +TH F+++ + ++ G + T F VT+
Sbjct: 357 LKAIHGLTSKGTMKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGVTIG 416
Query: 379 DGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
DG G C+ + + + DF + + D++LG +WL + G + + LTM
Sbjct: 417 DGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDVILGMQWLNTTGTMKIHWPSLTMT 476
Query: 439 FTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQI 479
F + L G SL A + I + ++ QG ++
Sbjct: 477 FRMGKKQFILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEM 517
>gi|108864287|gb|ABA92869.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 413
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 152/312 (48%), Gaps = 19/312 (6%)
Query: 161 TQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYA---AVSNRRIPPR 217
T+ L +S I F +GLRE++ I V++ +P L + LAR E A A R
Sbjct: 64 TEPLMDSQQIQLFTAGLREELAIDVELHQPDDLQEAMGLARAYERKASRLASGTRPALRA 123
Query: 218 PSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCD 277
P S P+ L ++P T G Q FRRLS AE ERR +GLC+NCD
Sbjct: 124 PFRSGPAAANLPTAPAATTEGSQEQAPR---------QFRRLSPAELAERRCQGLCYNCD 174
Query: 278 EQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNL 337
E+F GH+C + D ++E +E P+ VSL L G NTMRL +
Sbjct: 175 EKFVRGHKCARLFYIEYDDNVEGD------MEPAPDEPRVSLNVLAGLDGANTMRLPVEI 228
Query: 338 KKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ-FQVTVADGGVISSSGKCSHVPVNS 396
V L+DS STH F+++ LA+ ++ V VA+G + S G+C+++ +
Sbjct: 229 AGERVVALVDSGSTHNFIHTELARHLCLHLSPVRHDLYVVVANGDRLVSPGRCANLRLRI 288
Query: 397 QGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPP 456
+G F +D F L +S DI+LG EWL +LG ILWDF + M + V L G + P
Sbjct: 289 EGKLFTVDCFALDISTVDIILGTEWLSTLGPILWDFRNMRMSIWRSTREVTLHGLANRRP 348
Query: 457 ALANHGEINQLL 468
E LL
Sbjct: 349 PHCEMLETEDLL 360
>gi|261865347|gb|ACY01928.1| hypothetical protein [Beta vulgaris]
Length = 1583
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 203/447 (45%), Gaps = 69/447 (15%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT-- 133
R +LD V SG NP I R E++ + L E + + A+ LDG+A+ WY W +
Sbjct: 98 RAKKLDLPVFSGNNPDGWIIRAERFFQFYRLTEDEKVEAAVVSLDGEALLWYQWENRRRP 157
Query: 134 ---MGNMTWAQFKRALVTQFGTF---------EDGDA----------VGTQNLPESFFIS 171
M W +R T G+ E+G + +PES +
Sbjct: 158 IHRWSEMRWMLLRRFRETALGSLQEQWLSHEQEEGVVEYRRKFIELLAPLEGIPESIAQA 217
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEE----------------YAAVSNRRIP 215
F+S L+E+IK V+++ P+SL ELA EE Y+A +
Sbjct: 218 QFVSKLKEEIKNEVRIMGPSSLDHAMELAVQVEEKLNHRPKKKWESKASSYSAHNPNSYI 277
Query: 216 PRPSMSRPSPPLLNSSPTITKT---------GGSSQPSLLGP--PPPGLP---PF---RR 258
P+P++S P + PT T S S+ P P LP PF RR
Sbjct: 278 PKPTLS-AKPTYSFNYPTQTHNTPYNQFPAPSHHSSTSINSPNKPKTTLPIAKPFGEIRR 336
Query: 259 LSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELP------ 312
LS E +R GLCF CDE++ GHRCK +L +L E+++E +E +
Sbjct: 337 LSEKELQYKREHGLCFRCDEKWAIGHRCKKKELSILLGHEEEEEEYGSLMENIQPAHPDD 396
Query: 313 -----ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
+ E+SL ++ G + T++++G + V +++D +TH F++ ++ P+
Sbjct: 397 SQLEIHSPEISLNSVMGISSPKTLKMEGTIYGQKVIVMVDPGATHNFISLDTVRRLQIPI 456
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
+++ F V++ G G+C VP++ QG D+ L + D++LG +WL LG
Sbjct: 457 SSSRPFGVSLGTGAEAHGQGECKAVPLHLQGVCVMEDYLPLTLGNSDLILGVQWLEKLGT 516
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSL 454
++ ++ T+Q+ +TV L G +L
Sbjct: 517 MVTNWKTQTLQYKEGNETVTLRGNPAL 543
>gi|147770944|emb|CAN69535.1| hypothetical protein VITISV_013569 [Vitis vinifera]
Length = 617
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 147/289 (50%), Gaps = 32/289 (11%)
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI--PPRPSMSRPSPP 226
+ F+ GLR +I M KP +L + LAR +++ RRI PP P + P
Sbjct: 82 LVGSFMGGLRSEISETTCMFKPKTLKEATSLARMKDKQLQC-QRRISQPPLPIRT----P 136
Query: 227 LLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC 286
L + PT +K +RLS E RRAKGLCFN D++F HRC
Sbjct: 137 L--ALPTTSKASH----------------VKRLSWEEMQRRRAKGLCFNYDDKFTSAHRC 178
Query: 287 KAPQLLLLDADIEDKDEQ--AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTI 344
K PQ+LLL+ I+D E EA ++P E+SL ALTG T T + H + +
Sbjct: 179 KGPQILLLEGSIDDDSEGDIKEAKTDIPSDPEISLHALTGWTTAKT-----KIGTHDIVV 233
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD 404
IDS STH F++ +A V T F V VA+ + G+ ++ + QG F +
Sbjct: 234 FIDSGSTHNFISDKVAALLHLLVVPTAPFHVRVANDQPLKCQGRFHNIHILLQGIPFSIT 293
Query: 405 FFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
F+ LP++ D+VLG +WL LG+++ D+ ++TM+F W + L G ++
Sbjct: 294 FYSLPLTSLDLVLGVQWLEQLGSVVCDWKRMTMEFQWANKPRLLQGSNT 342
>gi|115481476|ref|NP_001064331.1| Os10g0317000 [Oryza sativa Japonica Group]
gi|15217201|gb|AAK92545.1|AC051624_3 Putative retroelement [Oryza sativa Japonica Group]
gi|31431040|gb|AAP52878.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|113638940|dbj|BAF26245.1| Os10g0317000 [Oryza sativa Japonica Group]
Length = 1476
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 186/417 (44%), Gaps = 52/417 (12%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
P+H R +F G+ +P + I RCE + ++ + +A +L A WY ++
Sbjct: 63 PKHWRPEFPKYDGKTDPLAFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDN 122
Query: 134 MGNMTWAQFKRALVTQFG------------------TFEDGDAVGTQNLP------ESFF 169
G TW +FK L ++G T ED LP E+
Sbjct: 123 EGTPTWERFKELLNLRYGPPLRSVPLFELSACRRTSTVEDYQDRFQALLPRAGRLEEAQQ 182
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELAR---FQEEY---AAVSNRRIPPRPSMSRP 223
+ F GL + + VQ KPASL + LAR E Y A S R + P P+
Sbjct: 183 VQLFTGGLLPPLSLQVQQQKPASLEEAMSLARQFELMEPYLFPATTSARGVLPTPAPRPS 242
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
+ P++ +P G P +RLS A+Q ERR GLC+NCDE++
Sbjct: 243 TGPVVKPAPATVTVEGR--------------PVKRLSQAQQEERRRLGLCYNCDEKYSRS 288
Query: 284 HRCKAPQLLLLDAD-IEDKDEQAE--ALEELPETLEVSLKALTGATPQNTMRLKGNLKKH 340
H +L ++ IE+ D+ E E E SL A+ G + L+ L
Sbjct: 289 HNKVCKRLFFVEGGAIEEGDDTVEDDTEEATVEAPVFSLHAVAGIPLGKPILLQVTLGAA 348
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
+ L+D+ STH F+ A + G PV + TVA+G +S G P+ QG
Sbjct: 349 SLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVLRRAPITIQGMA 408
Query: 401 FHLDFFLLPVSGCDIVLGAEWLRSLG-AILWDFSKLTMQFTWKGQTVQLTGYDSLPP 456
F +D +++P++G D+VLG +W+ LG I WD + T+ F +G+TV + SLPP
Sbjct: 409 FDVDLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVSFQHQGRTV---SWQSLPP 462
>gi|449472371|ref|XP_004153573.1| PREDICTED: uncharacterized protein LOC101213561, partial [Cucumis
sativus]
Length = 764
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 202/476 (42%), Gaps = 70/476 (14%)
Query: 70 GALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHW 129
GA + + +++ V +GE+P S +FR ++Y ++ L + + + +A +G A+ WY
Sbjct: 104 GANERDKFKKVEMPVFNGEDPDSWLFRADRYFQIHKLSDAEKVLVATISFEGPALNWYRA 163
Query: 130 LEQTMGNMTWAQFKRALVTQFGTFEDGDAVGT------------------------QNLP 165
E+ W K L+ +F + +G G +L
Sbjct: 164 QEERDKFTGWHNLKERLLVRFRSSREGSICGQFLRIKQQTTVEEYRNEFDRLMAPLADLQ 223
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAV----------SNRRIP 215
+ F++GL IK V KP L + A+ E + + P
Sbjct: 224 DRVVEETFMNGLFPWIKAEVVFCKPVGLAEMMHAAQLVENREIIRKEANLNGYAKGKYPP 283
Query: 216 PRPSMSRPSPPLLNS-----------SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQ 264
P S+ R S + +S + T+ T G + P +RL AE
Sbjct: 284 PNSSIIRSSAAMNHSEDKGNTIFPIRTVTLRTTAGEVKKE---------GPTKRLPDAEF 334
Query: 265 TERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDK------------DE-QAEALEEL 311
R+ KGLCF C+E++ GHRCK + L + + DE + +E
Sbjct: 335 QARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKEDEEYEIVEEAEWDETELNCVEIN 394
Query: 312 PE---TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVT 368
PE +E+S+ ++ G T TM+++G +K V ILID +TH F++ + ++ P
Sbjct: 395 PEDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTK 454
Query: 369 TTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAI 428
TT+ + V + G + G C + + +G++ +F L + G D VLG +WL SLG
Sbjct: 455 TTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLELGGVDGVLGMQWLYSLGVT 514
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITT 484
D+ LTM F G+ V++ G SL A+ + + QG + A+ T
Sbjct: 515 EVDWKNLTMTFLHNGKKVKIKGDPSLTKAMVGLKNMIKSWRDSDQGFLIECRAMET 570
>gi|356514101|ref|XP_003525745.1| PREDICTED: uncharacterized protein LOC100809540 [Glycine max]
Length = 1232
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 179/404 (44%), Gaps = 74/404 (18%)
Query: 78 IRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNM 137
++L+ G++P IF+ Q+ + + + L++A +++G A+ W+ W+ +
Sbjct: 1 MKLEVPRFDGKDPLGWIFKITQFFDYQGVSDAERLTVASFYMEGPALCWFQWMSRNGFLT 60
Query: 138 TWAQFKRALVTQFGTFEDGDAVG------------------------TQNLPESFFISCF 173
+W +AL T+F D G L +SCF
Sbjct: 61 SWQAMLQALETRFAPSYYDDPYGALFKIQQRGTVNEYLSEFERLANRVVGLAPPLSLSCF 120
Query: 174 LSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPT 233
+SGL ++ VQ L+P L Q LA+ QE+ + +RR R + P ++P
Sbjct: 121 ISGLNPELHREVQALQPMCLPQAMALAKLQED--KLLDRRRNHRHNFPVSPTPHHPNNPP 178
Query: 234 ITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLL 293
+ + ++ PP RRL+ E +R KGLC++CDE +C
Sbjct: 179 PSSSTSATNK----------PPIRRLTPEEMALKRDKGLCYHCDE------KC------- 215
Query: 294 LDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHI 353
L AL+G T R+ G +++H +TIL+D STH
Sbjct: 216 -------------------------LNALSGMPAPETFRVYGTVRRHQLTILVDGGSTHN 250
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F+ +AK G P T T V V DGGVI + V + QG QF D F LP+SG
Sbjct: 251 FVQLRVAKFLGLPSTPMTPLPVMVGDGGVIHCDCRYPQVSITIQGHQFTTDLFGLPLSGA 310
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPA 457
D+VLG +WLR+LG + D++ L+M FT G ++L L PA
Sbjct: 311 DLVLGVQWLRALGPVTTDYTALSMSFTHLGLPIKLFADVLLGPA 354
>gi|147773289|emb|CAN64782.1| hypothetical protein VITISV_003835 [Vitis vinifera]
Length = 1575
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/476 (27%), Positives = 207/476 (43%), Gaps = 96/476 (20%)
Query: 7 EERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPL--QINNQQPEP 64
+ER+EQL + ++ + ++E + L D + N P+ I N++
Sbjct: 345 KERIEQLEDGLHRMELGMANRLRQVEENLNRLSDVLLA-----NPENPILGSITNREGNG 399
Query: 65 AGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAV 124
G++ +V + ++L+F S ++PT R Q+ E +SLA HL+G+A
Sbjct: 400 GGQL---VVYSKTVKLEFPQFSRDDPTEWFNRVNQFFEFQNTPEAQKVSLASYHLEGEAN 456
Query: 125 PWYHWLEQTMGN----MTWAQFKRALVTQFGTFEDGD---------AVGT---------- 161
W+ W+ +T ++W F+ L +FG E D VG+
Sbjct: 457 QWWQWICRTFQEEGRVLSWMNFEDELWARFGPSECEDFDEALSRIRQVGSLRDYQREFER 516
Query: 162 -----QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPP 216
Q + + F+ GLR +I G++M KP +L ++ LAR +++ A R
Sbjct: 517 LGNRVQGWTQRALVGTFMGGLRPNISDGIRMFKPQTLKESINLARMKDDQLARQRR---- 572
Query: 217 RPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNC 276
R +PP + T+ T L PP P VA TE + G
Sbjct: 573 ---FGRLAPPT-RAPLTLPFT------QLATPPAP---------VAPVTEEQPAGQ---- 609
Query: 277 DEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGN 336
+ + PG LE++L AL G T TMR+
Sbjct: 610 NHEGSPG-------------------------------LEITLHALMGWTVPKTMRIVAR 638
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNS 396
+ H V +L+DS STH F++ +A PV T F V VA+G + G+ V +N
Sbjct: 639 IGAHDVVVLVDSGSTHNFISERMANLLRLPVVPTESFMVRVANGENLRCQGRFEEVQINL 698
Query: 397 QGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYD 452
QG F L + LP++G DIVLG +WL LG++ D+ +LTM+F W+ QT +L G D
Sbjct: 699 QGTIFSLTLYSLPLTGLDIVLGIQWLELLGSVGCDWRELTMEFMWENQTKKLVGID 754
>gi|32483242|emb|CAE02543.1| OSJNBb0069N01.1 [Oryza sativa Japonica Group]
gi|38344504|emb|CAE05183.2| OSJNBa0013A04.20 [Oryza sativa Japonica Group]
Length = 1395
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 174/402 (43%), Gaps = 26/402 (6%)
Query: 75 PRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR+ +LDF G ++P + RCEQ E D + LA HL A WY LE+
Sbjct: 113 PRYHKLDFPKYDGRDDPLPFLNRCEQLIWGQRTPEDDKVWLASYHLLDGAQQWYTCLERD 172
Query: 134 MGNMTWAQFKRALVTQFGTFEDGDAVG----------TQNLPESFF-------------- 169
G +W +F L ++G +G + + F
Sbjct: 173 HGPPSWHRFSELLNMRYGPLLRSAPLGELAAYRRTSTVDDYTDHFLDLLARAGYLSEDQQ 232
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
+ F GL+E + + VQM P +L LAR E + PPR + P
Sbjct: 233 VQLFTIGLQEPMSLDVQMQNPTTLEAAMSLARSFERRDHAARPPRPPRHAGRGLLPLPPA 292
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
++P + G PP RRLS E ERR +GLCFNCDE + GH
Sbjct: 293 ANPPAPAPEPAVAAKPAGTPPAVNRAIRRLSPLEMDERRRQGLCFNCDEPYSRGHNRVCR 352
Query: 290 QLLLLD-ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
+L L+ + + + + P TL +SL TG + M + +L + LIDS
Sbjct: 353 RLFFLEMGEDDADTDSTDDPAAAPATLRISLHVATGVRVSDAMHIMVHLGDTDLYALIDS 412
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
ST FL+ A + G + VTVA+G ++ G +P G +F D ++L
Sbjct: 413 GSTPTFLSQDAAARVGRDPQPRSGLNVTVANGDKVACPGVFPDMPFQIAGEEFATDVYVL 472
Query: 409 PVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+ G D+VLG +WL +LG ILWDF+ LTM F + V L G
Sbjct: 473 TLGGYDLVLGTQWLATLGPILWDFTALTMSFWHRDHCVTLHG 514
>gi|224114898|ref|XP_002332257.1| predicted protein [Populus trichocarpa]
gi|222832022|gb|EEE70499.1| predicted protein [Populus trichocarpa]
Length = 389
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 185/380 (48%), Gaps = 47/380 (12%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
R++ GE+P + +C++Y R+ ++ + + +L+G A W+ L + ++
Sbjct: 17 RMELSTFRGEDPRGWMRKCKKYFRIHSIPAHQWIEVVSYYLEGKADVWFEGLVRGSDSLI 76
Query: 139 -WAQFKRALVTQFGTFED------------------------GDAVGTQN--LPESFFIS 171
W +F + L +FG+ +D +G N LPE++++S
Sbjct: 77 EWEEFSQDLCRRFGSKDDIVEEFNKLIQDENMDDYIERFEELRSLMGDLNPLLPEAYYVS 136
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
F+SGL+++IK +++LKPA +L FE A++QEE +N S+ R +PP +
Sbjct: 137 SFISGLKDEIKPMLKILKPARVLVAFEQAKWQEE---ANNALTKKTRSLQRSNPPFHSG- 192
Query: 232 PTITKTGGSSQPSLLGPP-PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ 290
+ G++ GP G+ PF S+ EQ R+ G CF C +++ PGHRC +
Sbjct: 193 ----RIPGNAPSKYFGPSRTKGVKPFSD-SLYEQ--RKKLGQCFKCGDKYMPGHRCNSKG 245
Query: 291 LLLLDADIEDKD-------EQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVT 343
L +++ +D + + +++ E +SL AL NT+R+KGN + +
Sbjct: 246 LHMIEGVEGGEDEEIGEFEDNMQGTDQIDE-YGLSLNALADNDTYNTIRIKGNCQGQNLI 304
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHL 403
ILIDS STH F+N S K + TT VTVA+G V+ C ++F
Sbjct: 305 ILIDSGSTHSFINESTIKALNATTSKTTLLAVTVANGNVMLCEKHCPAFTWFMHNYEFKS 364
Query: 404 DFFLLPVSGCDIVLGAEWLR 423
+ +L + D+VLG +WL+
Sbjct: 365 NLRVLELGRHDLVLGVDWLK 384
>gi|224108127|ref|XP_002333429.1| predicted protein [Populus trichocarpa]
gi|222836623|gb|EEE75016.1| predicted protein [Populus trichocarpa]
Length = 389
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 185/380 (48%), Gaps = 47/380 (12%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
R++ GE+P + +C++Y R+ ++ + + +L+G A W+ L + ++
Sbjct: 17 RMELSTFRGEDPRGWMRKCKKYFRIHSIPAHQWIEVVSYYLEGKADVWFEGLVRGSDSLI 76
Query: 139 -WAQFKRALVTQFGTFED------------------------GDAVGTQN--LPESFFIS 171
W +F + L +FG+ +D +G N LPE++++S
Sbjct: 77 EWEEFSQDLCRRFGSKDDIVEEFNKLIQDENMDDYIERFEELRSLMGDLNPLLPEAYYVS 136
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
F+SGL+++IK +++LKPA +L FE A++QEE +N S+ R +PP +
Sbjct: 137 SFISGLKDEIKPMLKILKPARVLVAFEQAKWQEE---ANNALTKKTRSLQRSNPPFHSG- 192
Query: 232 PTITKTGGSSQPSLLGPP-PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ 290
+ G++ GP G+ PF S+ EQ R+ G CF C +++ PGHRC +
Sbjct: 193 ----RIPGNAPSKYFGPSRTKGVKPFSD-SLYEQ--RKKLGQCFKCGDKYMPGHRCNSKG 245
Query: 291 LLLLDADIEDKD-------EQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVT 343
L +++ +D + + +++ E +SL AL NT+R+KGN + +
Sbjct: 246 LHMIEGVEGGEDEEIGEFEDNMQGTDQIDE-YGLSLNALADNDTYNTIRIKGNCQGQNLI 304
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHL 403
ILIDS STH F+N S K + TT VTVA+G V+ C ++F
Sbjct: 305 ILIDSGSTHSFINESTIKALNATTSKTTLLAVTVANGNVMLCETHCPAFTWFMHSYEFKS 364
Query: 404 DFFLLPVSGCDIVLGAEWLR 423
+ +L + D+VLG +WL+
Sbjct: 365 NLRVLELGRHDLVLGVDWLK 384
>gi|357130210|ref|XP_003566743.1| PREDICTED: uncharacterized protein LOC100838891 [Brachypodium
distachyon]
Length = 635
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 140/270 (51%), Gaps = 26/270 (9%)
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSP 232
F + L E +K V+ML+P +L ++A E +A+++ +
Sbjct: 64 FTNNLGEPLKTQVKMLRPTTLEAAMDMAVSFEHFASIT-------------AAAGPTRPN 110
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL 292
+ ++Q P F++L+ AE ER+AKGLCFNCDE+F GHRCK
Sbjct: 111 RPPRPSNTAQVVATDAIRGATPVFKKLNAAEMEERQAKGLCFNCDEKFVRGHRCKC---- 166
Query: 293 LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTH 352
L ++ DK+E+ E L++SL A+TG +TM+L + + + LIDS STH
Sbjct: 167 LFYIEVADKEEE--------EDLQISLLAITGVRTSDTMQLVVWVGERELLALIDSGSTH 218
Query: 353 IFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSG 412
F++ LA P T + +VT+A+G ++ SG H + F +D + +P+ G
Sbjct: 219 NFISEELAAHVSAPFCTGRRLRVTIANGDHVTCSGLLRHTAIAIGQESFVVDLYAIPLGG 278
Query: 413 CDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
D+VLG WL++LG ILWDF +L M F W+
Sbjct: 279 FDVVLGTHWLKTLGPILWDFERLYMSF-WR 307
>gi|147810501|emb|CAN60890.1| hypothetical protein VITISV_011880 [Vitis vinifera]
Length = 1378
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 139/471 (29%), Positives = 213/471 (45%), Gaps = 96/471 (20%)
Query: 4 KELEERVEQLSHQFNEKVEVLSQQSN--------DLQELI--LSLHDQFI---RFQEDRN 50
+E+ ++ ++ +F K E+ ++S DL+ LI LSL +Q + R +E R
Sbjct: 60 QEVRRKMLEMMKEFERKQELWRRESEEKAVKSFADLKSLIGGLSLQNQEVMTNRGEERRW 119
Query: 51 NNQPLQINNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETD 110
NQ +G + ++DF +G + R E + +
Sbjct: 120 ENQ--------------LGHS------TKVDFPKFNGCGLDGWLLRVEYFFEVDRTPPEA 159
Query: 111 VLSLAIGHLDGDAVPWYHWLEQTMGN---MTWAQFKRALVTQFG--TFEDGDA------- 158
+ LA HL+G A+ W+ +T GN + W+++ AL +FG F+D A
Sbjct: 160 RVRLAALHLEGKAIQWHQGYIKTRGNEAYLDWSEYVIALNARFGQHVFDDPIADLRNLRQ 219
Query: 159 VGT--------------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
G+ ++ ES +S FLSGL +++++ V+M KP +L + LAR QE
Sbjct: 220 TGSLQSYMDEFDELYPRADIKESHALSFFLSGLIDELQMPVRMFKPQTLADAYSLARLQE 279
Query: 205 -EYAAVSNRRIPPRPSMSRPSP------------PLLNSSPTITKTGGSSQPS-----LL 246
AA+ N+ P+P PSP P+ + S T ++ P LL
Sbjct: 280 IAVAALQNK---PKPVSKGPSPYSPTTNHYHKATPITSISQYATNLSNTTFPKTTNAGLL 336
Query: 247 GPPP--------PGLPP--FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA 296
PP PG+ R S + ERRAKGLCF CDE+F PGH+CK QL ++
Sbjct: 337 PLPPSTNIPKTNPGITTRNHRNFSNRDLDERRAKGLCFWCDEKFTPGHKCKRKQLYVMQI 396
Query: 297 DIEDKDE------QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
+E E Q E L + E +++SL AL TM L GN K + +LIDS S
Sbjct: 397 QVETDGEGPEGNLQMEGLGKEDEQIQLSLNALMSNEDSQTMTLNGNYKGRSLFVLIDSGS 456
Query: 351 THIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
+H FL+S +AK+ C +VTVA+G + + CS QG +F
Sbjct: 457 SHNFLSSKVAKRVDCCWQKARGIRVTVANGQELHCTALCSDFRWRMQGQEF 507
>gi|356574444|ref|XP_003555357.1| PREDICTED: uncharacterized protein LOC100813803 [Glycine max]
Length = 2140
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 147/306 (48%), Gaps = 35/306 (11%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRP 223
L S +SCF+SGL +I+ VQ +P+SL + LAR QE+ +++RR R
Sbjct: 47 LSPSVLLSCFISGLSPEIRREVQAFQPSSLPKATALARLQED--KINDRRKHTRIP---- 100
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
N SPT T S P P P P F + + + RR KGLC+NCDE++
Sbjct: 101 ----FNHSPTNTT---PSNPQSSQQPRPKAP-FVQRTQEDMAYRREKGLCYNCDEKWNSS 152
Query: 284 HRCKAPQLLLLDADIEDKD---------------------EQAEALEELPETLEVSLKAL 322
HRCK L + E E +A + P +SL A+
Sbjct: 153 HRCKGRVLFFIANSDETSSPESSPSDPSSPLKSEHDHTLLEATQAFDLTPLQPHISLHAM 212
Query: 323 TGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV 382
G +T RL G + K VTIL+DS STH F+ +AK P+ T +V V +G V
Sbjct: 213 AGVPATDTFRLYGLINKTRVTILVDSGSTHNFVQPRVAKFLNLPLHDTQPLRVMVGNGSV 272
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
+ + Q +F + LLP+SG D+VLG EWLR+LG ++ D++ TM+FT
Sbjct: 273 LDCQQMIPDTTILIQEHRFVVTLRLLPLSGADVVLGVEWLRTLGPVITDYTDFTMKFTLF 332
Query: 443 GQTVQL 448
G+ + L
Sbjct: 333 GRPIHL 338
>gi|15451607|gb|AAK98731.1|AC090485_10 Putative retroelement [Oryza sativa Japonica Group]
gi|108706172|gb|ABF93967.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1461
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 186/406 (45%), Gaps = 36/406 (8%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWL-EQ 132
P+H R DF G+ +P I RCE + +++ + + +A +L A WY + E
Sbjct: 64 PKHWRPDFPHYDGKSDPLIFINRCESFFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQED 123
Query: 133 TMGNMTWAQFKRALVTQFG------------------TFEDGDAVGTQNLP------ESF 168
G TW +FK L ++G T ED LP E
Sbjct: 124 ERGTPTWTRFKELLNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQ 183
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELAR---FQEEYAAVSNRRIPPRPSMSRPSP 225
+ F GL + + VQM P SL LAR E+Y AV + P R + P+P
Sbjct: 184 RVQLFTGGLLPPLSLQVQMQNPQSLAAAMSLARQFELIEQYTAVPAK-APGRGVLPAPAP 242
Query: 226 -PLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH 284
P L + + P RRL+ AEQ ERR GLCFNCDE++ GH
Sbjct: 243 RPQLALPAPAGAAKPAPPAATAADNRP----VRRLNQAEQEERRRLGLCFNCDEKYSRGH 298
Query: 285 RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTI 344
+L +D+ +ED+DE+A E E SL A+ G + + L+ L +
Sbjct: 299 NKVCKRLFFVDS-VEDEDEEAPEDEVDAEAPVFSLHAVAGVAVGHPILLRVQLGATTLVA 357
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD 404
L+D+ STH F+ S A + G V + TVA+G ++ G H P+ +G FH+D
Sbjct: 358 LVDTGSTHNFIGESAAARTGLSVQPRPRMTATVANGEKVACPGVLRHAPITIEGMPFHVD 417
Query: 405 FFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+++P++G DIVLG +W+ LG + WD + + F +G+T+ G
Sbjct: 418 LYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRALTFDLEGRTICWQG 463
>gi|449449136|ref|XP_004142321.1| PREDICTED: uncharacterized protein LOC101219643 [Cucumis sativus]
Length = 648
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 213/511 (41%), Gaps = 77/511 (15%)
Query: 15 HQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQ-------------Q 61
Q E+VE ++ L+E++L + R + N + + +
Sbjct: 4 RQIEERVEGTEKEIMSLKEMMLEMKKSMDRMTNELRENHGAKKKEEAGTTDDIRLKLKGK 63
Query: 62 PEPAGRI----GGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIG 117
E AG G + + ++ +L+ + + NP S +R E + + L E + + +A+
Sbjct: 64 LEEAGTTVESGGSSADRSKYKKLEMPLFTRVNPESWAYRAEHFFDINDLPEAEKVKVAVV 123
Query: 118 HLDGDAVPWYHWLEQTMGNMTWAQFKRAL------------------VTQFGTFED---- 155
+ V W+ W + +W K + + Q G++ +
Sbjct: 124 SFGQEEVDWFRWSNRRKRVESWEDLKERMFDFFNDTGQQSLGARLIRIKQEGSYSEYVKK 183
Query: 156 --GDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR 213
+ ++ ES + FL+GL ++ V P +L + + A+ V++R
Sbjct: 184 FVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEAQL------VNDRN 237
Query: 214 IPPRPSMSRPSPPLLNSSPTITKTGGSSQPS---------------LLGPPPPGLPPFRR 258
I + +M + +K G ++ + L PP +R
Sbjct: 238 IALKLAMEELDIVEPKRNENSSKFQGKNEKTESKKTEFVMKQVTIPLKNDYQKKDPPIKR 297
Query: 259 LSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ----LLLLDADIEDKDEQAEALEELPET 314
LS E R KGLCF C+E++ PGHRCK + +LL+ + ED + + +E E
Sbjct: 298 LSDTEFRARLDKGLCFRCNEKYAPGHRCKGREKRELMLLILNEEEDHKREEDTEDEASEV 357
Query: 315 LE-----------VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQY 363
+E + L+ +TG T + TM+LKG++ V ILIDS +T+ F++ L +
Sbjct: 358 IELNHLELNMDNPIELRLITGVTSKGTMKLKGHVNGREVVILIDSGATNNFISQVLVDEL 417
Query: 364 GCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLR 423
+ T+F VT+ +G SG C V V + DF + + D+VLG +WL
Sbjct: 418 QLSIDPGTRFGVTIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLD 477
Query: 424 SLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
S G + + LTM F KG+ + L G SL
Sbjct: 478 STGTMKVHWPSLTMTFWMKGRRIILKGDPSL 508
>gi|242085414|ref|XP_002443132.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
gi|241943825|gb|EES16970.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
Length = 1462
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 178/398 (44%), Gaps = 35/398 (8%)
Query: 74 QPRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQ 132
P+H + DF G +P + +CE Y R + + + + HLD A W+ L+
Sbjct: 55 HPKHKKWDFPRFDGSSDPMLFLNKCEAYFRQHRTMAEERVLMPSYHLDDVAQLWFTQLQD 114
Query: 133 TMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKP-- 190
G +W FK L +FG ++ P C +G ED Q L P
Sbjct: 115 DDGTPSWGTFKDLLNLRFGP-------PLRSAPMFEIAECRRTGTVEDYSNRFQALLPRA 167
Query: 191 -----ASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSL 245
A +Q + AV R+ + SR P + + G +++PS
Sbjct: 168 GRLEEAQRVQLYTGGLLPPLSHAV---RLHHPETGSRHEPGAPGGTDGAVEAGSAARPSA 224
Query: 246 LGPPP-----PGLPP---------FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQL 291
P P P RRLS E ERR +GLCFNC+E + GH +L
Sbjct: 225 PARSPGRTGAPADAPCSHGRAEGAIRRLSKDEMAERRRQGLCFNCNEPYTRGHNRFCKRL 284
Query: 292 LLLDA-DIEDKDEQAEALEELPETLE--VSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
+D +++D ++ AEA ++ T SL A+ G +T+R++ + + L DS
Sbjct: 285 FFVDGVEVDDVEDAAEAGDQAAGTDAPCYSLHAVAGVRLSDTLRVRVMVGSVSLVALSDS 344
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
S+H F++ A++ G V + + VA+G I+ G P QG F D F++
Sbjct: 345 GSSHNFISERAAQRTGLLVVSRPRLSAVVANGERIACPGVLPQAPFVIQGSSFTADLFIM 404
Query: 409 PVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
P++G D+VLGA+WL +LG + WDF+ TM F +G T+
Sbjct: 405 PLAGFDVVLGAQWLGTLGPVTWDFTARTMSFQQQGATI 442
>gi|12324281|gb|AAG52110.1|AC023064_3 hypothetical protein; 60873-62443 [Arabidopsis thaliana]
Length = 508
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 185/393 (47%), Gaps = 33/393 (8%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF SG+ +F+ EQ+ L + + +A H D A W+ L T
Sbjct: 88 KLDFHRFSGDRVREWLFKLEQFFSLDFTPKELKVRVASSHFDVVAKKWHQSLLDTDFGER 147
Query: 139 WAQFKRALVTQFGTFEDGDAVGTQ-----------NLPESFFISCFLSGLREDIKIGVQM 187
+A+ + + ++ D + NL E ++ +L GL+ D +I V+M
Sbjct: 148 FAEVLNDPIVELNQLQETDGIDEYHARFELISSRVNLSEESLVNAYLKGLQLDTQINVRM 207
Query: 188 LKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQP---- 243
+P S+ Q L R E+ P + S++ + + + +K SS+P
Sbjct: 208 FQPHSIHQCLMLGRGYEKAH-------PKKNSLNNCCVAKWSENNSQSKGILSSKPEHVH 260
Query: 244 ------SLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDAD 297
S+ P P P + LS+ ++++ K LC+ DE++K R +A +
Sbjct: 261 NTVLLTSMERPKDPTTQPHKVLSIEDRSKNNQK-LCYFGDEKYKET-RFEAEED---SGK 315
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
+E+ + LE+ +S+ A++G + TMR+KG +K ++ILID STH F++S
Sbjct: 316 MEEVHMEKVELEKTGIVAHISVNAISGVSDYRTMRVKGLYEKQVLSILIDPDSTHSFMDS 375
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
+A++ C + + QV+VADG ++ + K +G Q D ++ + GCD+VL
Sbjct: 376 KVAEKLKCVLKPASMAQVSVADGRLLGLNAKIDKFQWELRGTQLQADLMVITLRGCDMVL 435
Query: 418 GAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
GA+WL +LG I DF K MQF + V L G
Sbjct: 436 GAQWLETLGPITCDFKKSVMQFHIGQKKVPLQG 468
>gi|116309032|emb|CAH66146.1| OSIGBa0114M03.4 [Oryza sativa Indica Group]
Length = 1448
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 193/433 (44%), Gaps = 49/433 (11%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
P+ +LDF G+ +P I RCE Y ++E + + +A +L+ A WY +
Sbjct: 59 PKFQKLDFPRYDGKSDPLIFINRCESYFHQQRIMEEEKVWMASYNLEDGAQLWYIQVHTD 118
Query: 134 MGNMTWAQFKRALVTQFG-------------TFEDGDAVGTQN-----------LPESFF 169
G +W +FK L ++G G Q+ L E
Sbjct: 119 EGTPSWRRFKDLLNLRYGPPLRSAPLAELAECRRTGTVAEYQDRFQALLARAGPLEEDQR 178
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELAR---FQEEYAAVSNRRIPPRPSMSRPSPP 226
+ F GL + I V++ P SL LAR +E+Y A P P +
Sbjct: 179 VQLFTGGLLPPLSIDVRIQNPQSLAAAMSLARQFELREQYTA-------PAPRAAHRPLL 231
Query: 227 LLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC 286
+ +P+ +RL+ AEQ ERR KGLC+NCDE++ GH
Sbjct: 232 PAPPPRLALPAPPAPKPATPATITVEGRQIKRLTQAEQEERRRKGLCYNCDEKYTRGHNR 291
Query: 287 KAPQLLLLDADIEDKDEQA------EALEELPETLEVSLKALTGATPQNTMRLKGNLKKH 340
+L LL+ ED+D+ E+ P SL+A+ G + +TM++ L
Sbjct: 292 VCQRLFLLEGIEEDEDDGTPEDFGDAGAEDAPV---FSLQAIAGVSFTDTMQVAVTLGTA 348
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
+ L+DS STH F++ + A++ G P+ + VA+G ++ G P+ G
Sbjct: 349 SLVALLDSGSTHNFISEAAAQRSGLPLQQRPRLTAMVANGERVTCIGVIRGAPLTIGGNS 408
Query: 401 FHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS-LPPAL- 458
F D F++P++G D+VLG WL +LG I+WD + M F +G+ + +G ++ PAL
Sbjct: 409 FPADLFVMPLAGYDVVLGTRWLGALGPIVWDLATRKMTFQHRGRAICWSGVETPSKPALG 468
Query: 459 ---ANHGEINQLL 468
AN +++LL
Sbjct: 469 AMAANEPLLDELL 481
>gi|323134589|gb|ADX31265.1| unknown [Triticum aestivum]
Length = 1231
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/429 (27%), Positives = 175/429 (40%), Gaps = 65/429 (15%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
++DF GENP +CE+Y + + + LA + G A W E + T
Sbjct: 158 KMDFPSFDGENPQFWKTKCEKYFDVYGVAPDLWVRLATLNFTGTAARWLQLHETQSTSFT 217
Query: 139 WAQFKRALVTQFG------------TFEDGDAVGTQ----------------NLPESFFI 170
WA AL +FG T V +F
Sbjct: 218 WASLCEALCHKFGREQYQSHLRQFNTLRQSGTVADYMTRFEELMHHILAHNPAFDSVYFT 277
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
+ FL GL+ +I+ V + +P L F LA QEE RR R + P
Sbjct: 278 TQFLDGLKGEIRAVVMLHQPKDLDSAFSLATLQEELMEALPRREYKRQDAANQRSP--AQ 335
Query: 231 SPTITKTGGSSQPSLLGPPPPGL---------PPFRR-------LSVAEQTERRAKGLCF 274
P + + L GPPP PP RR A + RRA+GLCF
Sbjct: 336 RPLLAIGAPPVRQVLPGPPPAAEDRRAIDAANPPDRRDQGRGDDRVAALRNYRRARGLCF 395
Query: 275 NCDEQFKPGHRCK-------APQLL-LLDAD-----IEDKDEQAEALEELPETLEVSLKA 321
C E++ GH+C +LL LL AD + D D + L + +S A
Sbjct: 396 KCGERWGQGHQCGPTVQLHVVEELLELLQADQGVPVVPDPDSDEDVL------MCISKGA 449
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
TG T T+RL G + + IL+DS S+H FL+ ++ + P+ + V +ADGG
Sbjct: 450 TTGQTTPRTVRLLGQIGGQEMLILVDSGSSHSFLSDTVVARLQLPIQAMSTVAVKIADGG 509
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
+S SG +QG +F D +L + D+++G +WL S G + D+S + F
Sbjct: 510 TLSCSGVVPECRWKTQGHEFVTDLRVLALGCYDMIVGMDWLESCGPMWIDWSAKQLIFNH 569
Query: 442 KGQTVQLTG 450
GQ +QL G
Sbjct: 570 GGQQIQLAG 578
>gi|224123438|ref|XP_002330315.1| predicted protein [Populus trichocarpa]
gi|222871350|gb|EEF08481.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 190/415 (45%), Gaps = 63/415 (15%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
R++ GENP + +C +Y ++ + + + +L G A W+ L + N +
Sbjct: 128 RVELPTFRGENPRGWLRKCRKYFKMNTIPAHQWVEVVSYYLKGKADIWFEGLIRE--NES 185
Query: 139 WA---QFKRALVTQFGTFEDG--------------DAVG------------TQNLPESFF 169
W +F + L +FG+ ED D + +L E ++
Sbjct: 186 WMDLEEFAQILCRRFGSREDSVEEFNKLIQDKSVDDYIKRFEELRSLMSALNSSLTEFYY 245
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
+S F++GL+EDIK +++LKPA++L FE AR+QE+ SN + R + + S N
Sbjct: 246 VSSFINGLKEDIKPMLKILKPANVLMAFEQARWQEK----SNNALTRRSRLVQRSNTTFN 301
Query: 230 SSPTITKTGGSSQPSLLGPP--PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK 287
+ + ++ P+ P G+P S+ EQ R+ G CF C +++ PGHRC
Sbjct: 302 NG----RVASNAPPTAFNPNRMEGGIP--HSDSLFEQ--RKRLGQCFKCGDKYTPGHRCN 353
Query: 288 APQLLL--------------LDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRL 333
L + LD ++DK ++ ++E +SL AL NT+R+
Sbjct: 354 TKGLHMIERVEEEEDEEVKELDDIMQDKCKERRLIDEFG----LSLNALAENDTCNTIRI 409
Query: 334 KGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVP 393
KGN + + I I S STH F++ + + T VTVA+G V+ +
Sbjct: 410 KGNCQGRDLIIFIVSGSTHSFIDEGTITELNVAKSKTMLLAVTVANGTVMLCEMQSPGFT 469
Query: 394 VNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
QG++F + +L + DI+LG +WL+ +L+DF KL + + ++L
Sbjct: 470 WFMQGYEFKANLRVLKLDRHDIMLGVDWLKQYSPVLFDFIKLRLSLKKSDRMIEL 524
>gi|449496938|ref|XP_004160268.1| PREDICTED: uncharacterized protein LOC101232747 [Cucumis sativus]
Length = 701
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 195/417 (46%), Gaps = 49/417 (11%)
Query: 60 QQPEPAGRIGGALV-QPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGH 118
++ E A GG+ + ++ +L+ + +G NP S +R E + + L E + + +A+
Sbjct: 36 EEAETAVESGGSNADRSKYKKLEMPLFTGVNPESWAYRAEHFFDINNLPEAEKVKVAVVS 95
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFED---GDAVGTQNLPE---SFFISC 172
+ EQ++G A+ R + Q G++ D + + LP+ S +
Sbjct: 96 FGQE--------EQSLG----ARLIR--IRQEGSYSDYVKKFVIYSAPLPDMAKSILLDA 141
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSP 232
FL+GL ++ V P +L + + A+ V++R I + +M S
Sbjct: 142 FLTGLEPALQAEVISRHPQTLEECMKEAQL------VNDRNIALKLAMEEMDKVEPKRSE 195
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ-- 290
+K G ++ PP +RLS E R KGLCF C+E++ PGHRCK +
Sbjct: 196 NNSKLQGKNEKK-------KDPPIKRLSDTEFRARLDKGLCFRCNEKYSPGHRCKGREKR 248
Query: 291 --LLLLDADIED-------KDEQAEALE----ELPETLEVSLKALTGATPQNTMRLKGNL 337
+LL+ + ED +DE +E +E EL E + L+ +TG T + TM+LKG++
Sbjct: 249 ELMLLILNEEEDHERESNTEDEASEIIELNQLELNEDTPIELRLITGVTSKGTMKLKGHV 308
Query: 338 KKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQ 397
V ILIDS +T+ F++ L + + T+F V + +G G C V V +
Sbjct: 309 NGKEVVILIDSGATNNFISQVLVDELQLSIDPGTRFGVNIGNGTRCEGRGICKRVKVKLK 368
Query: 398 GFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
DF + + D+VLG +WL S G + + LTM F KG+ + L G SL
Sbjct: 369 ELTIVADFLAVELGKVDLVLGMQWLDSTGTMKVHWPSLTMTFWTKGRRIILKGDSSL 425
>gi|242085372|ref|XP_002443111.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
gi|241943804|gb|EES16949.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
Length = 1456
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 182/411 (44%), Gaps = 38/411 (9%)
Query: 74 QPRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQ 132
P+H + DF G +P + +CE Y R + + + +A HLD A W+ L+
Sbjct: 64 HPKHKKWDFPHFDGSTDPMLFLNKCEAYFRQHRTMAEERVRMASYHLDDAAQLWFIQLQD 123
Query: 133 TMGNMTWAQFKRALVTQFG-------TFEDGDAVGTQN-----------------LPESF 168
G TW FK L +FG FE + T L E+
Sbjct: 124 DEGTPTWVNFKDLLNLRFGPPLCSAPMFELAECRRTGTVEEYANRFQALLPRAGRLDEAQ 183
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE----EYAAVSNRRIPPRPSMSRPS 224
+ F GLR + V++ P SL LAR E E A R PPR + +
Sbjct: 184 RVQLFTGGLRPPLSSTVRLHNPDSLAAAISLARQVELMELERPAPVPSRAPPRGLSAPAA 243
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH 284
L SP + + G RRL+ E ERR +GLCFNC+E+F GH
Sbjct: 244 RAALPLSPPLLALPAPPAAAQQGHAEGNQ---RRLTPEEMAERRRQGLCFNCNEKFSRGH 300
Query: 285 RCKAPQLLLLDADIEDKDEQAEALEELPETLE-----VSLKALTGATPQNTMRLKGNLKK 339
+L L+ +E D QAE + + + SL A+ G + TM+++ +
Sbjct: 301 NRFCKRLFFLEG-VEIDDAQAEETDAAADAVAQEAPIFSLHAVAGVSVGRTMQVRVRVGS 359
Query: 340 HGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGF 399
+ L+D+ STH F+ + A + G P+ + + VA+G + G H P+
Sbjct: 360 TPLIALLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCPGVIKHAPIAIHDS 419
Query: 400 QFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
F +D F++P++G D+VLG +W+ +LG ++WDF ++ F +G TV+ G
Sbjct: 420 VFAVDLFVMPLAGHDLVLGTQWMATLGRLVWDFIDGSVSFQHQGSTVRWPG 470
>gi|147802690|emb|CAN72998.1| hypothetical protein VITISV_043958 [Vitis vinifera]
Length = 1078
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 135/257 (52%), Gaps = 20/257 (7%)
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK 287
+ SSPT KT L P ++L+ AE R A+GLCFNCDE+F P H+CK
Sbjct: 176 IGSSPTKIKT---------------LSPMKQLTWAEMQRRHAQGLCFNCDEKFAPRHKCK 220
Query: 288 APQLLLLDADI-EDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILI 346
QLLLL+ E+++++A A L E+SL ALT + TM + + H + +LI
Sbjct: 221 GXQLLLLEGXYDEEENDEAGAHTHLXGEXEISLHALTRWSTARTMXVSAKVGPHELIVLI 280
Query: 347 DSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD-F 405
DS STH F+N + + P+ T F V VA+G + G+ +V V QG F L
Sbjct: 281 DSGSTHNFINERIVELLQLPMVPTEPFNVKVANGDPLKCQGRFENVSVLLQGIPFTLSTL 340
Query: 406 FLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEIN 465
+ LP+ G D+VLG L LG ++ D +TM+F+WK QL G D+ P I+
Sbjct: 341 YSLPLIGLDMVLGVHXLEQLGTVVCDXKIMTMEFSWKDXRHQLEGIDNQPIQPTKFKTIS 400
Query: 466 QLLLQEKQGIFFQIMAI 482
+ + KQG F ++ +
Sbjct: 401 KEI---KQGNFIFVVCL 414
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWL 130
+L+F SG++PT R +Q+ LET +SLA HL+ +A W+ WL
Sbjct: 87 KLEFPKCSGDDPTGWFMRVDQFFEYQGTLETQKVSLASFHLEWEANQWWQWL 138
>gi|359372828|gb|AEV42261.1| hypothetical protein [Beta vulgaris]
Length = 1396
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/415 (26%), Positives = 184/415 (44%), Gaps = 84/415 (20%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
RLD + +G NP I R E+Y L + L A+ LDG+A+ W+ W +
Sbjct: 81 RLDLPIFTGTNPDGWILRTERYFGFYRLAAEEQLEAAVVALDGEALLWFQWEHRHRPITG 140
Query: 139 WAQFKRALVTQF------------------GTFEDGDAVGTQ------NLPESFFISCFL 174
W + K L+ QF G+ ++ + + N+PE+ + F+
Sbjct: 141 WPEMKAMLLRQFRDTALGSLQEQWMNHHQEGSVKEYKSRFIELMAPLDNIPENIAQAQFI 200
Query: 175 SGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTI 234
S L+E+IK + R +E+ RR PRPS + P +++P
Sbjct: 201 SKLKEEIKNEM---------------RIEEKLNRRGGRRWEPRPSNN--YSPNTHTTPNS 243
Query: 235 TKTGGSSQPSLLGPPPPGLP-----------------------PF---RRLSVAEQTERR 268
++T + + L P P P P+ RRLS E +R
Sbjct: 244 SQTFRTQTQTYLPPKHPAPPQSVFSSPSIVSPAKTKTHIPIARPYGEIRRLSEKELQHKR 303
Query: 269 AKGLCFNCDEQFKPGHRCKAPQLLLL----DADIEDKDEQAEALEELPETL--------E 316
+GLCF CD+++ GHRCK +LL D +IE + + E+P T E
Sbjct: 304 ERGLCFRCDDKWSVGHRCKKELSVLLSCKEDEEIEYGELENAPQPEIPNTHIAETFVNPE 363
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
+SL ++ G + T++L+G + V ++ID +TH F++ ++ PV+ F+V+
Sbjct: 364 ISLNSVMGFSNPKTLKLRGTIYGEAVIVMIDPGATHNFVSIHTVERLNIPVSHAKGFEVS 423
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFL--LPVSGCDIVLGAEWLRSLGAIL 429
+ G + +G+C VP+ QG ++ FL P+ D+++G +WL LG ++
Sbjct: 424 LGTGQEVRGTGECLAVPLMVQGV---MENFLPPPPLGNSDVIMGIQWLEKLGTMV 475
>gi|18568269|gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 184/421 (43%), Gaps = 55/421 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
R++F G+NP CE Y + + + +A H G A W + + + ++
Sbjct: 174 RVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLS 233
Query: 139 WAQFKRAL----------------------------VTQFGTFEDGDAVGTQNLPESFFI 170
W++F R L V QF D + N ++
Sbjct: 234 WSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYT 293
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPL--- 227
F+ GLR+DIK + + +P++L LA QEE A + R PS S P
Sbjct: 294 MRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQEE-ATTARRWRRSEPSSSHAGPKTGVQ 352
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK 287
L++S T S+Q + L RR RRAKGLC C E++ PGH+C
Sbjct: 353 LSASTKWTSNKDSTQSA---SHSDKLESLRRF-------RRAKGLCDKCAEKWNPGHKCA 402
Query: 288 A-PQL--------LLLDADIEDKDEQAEALEELPETLEVSLK--ALTGATPQNTMRLKGN 336
A QL LL+D ++ + D E PE L V++ A TG+T + T++L G+
Sbjct: 403 ATAQLHAMEEVWSLLVDEEVPESDLSPP--EPAPEQLFVTISKSAWTGSTGRQTLKLNGS 460
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNS 396
++ H + ILIDS S+H FLN L + + QV VA+G +++ K
Sbjct: 461 IQNHPLLILIDSGSSHTFLNDQLRPHLQGVTSMASTLQVQVANGAMVTCHYKLLQAQWQI 520
Query: 397 QGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPP 456
Q F D LP+ D+V+G +WL S + D+++ + ++G +V L G + P
Sbjct: 521 QNCSFTSDVSFLPLPYYDMVVGMDWLESFSPMRVDWAQKWLIIPYQGSSVLLQGNTAGVP 580
Query: 457 A 457
A
Sbjct: 581 A 581
>gi|356529593|ref|XP_003533374.1| PREDICTED: uncharacterized protein LOC100812827 [Glycine max]
Length = 572
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 119/518 (22%), Positives = 227/518 (43%), Gaps = 80/518 (15%)
Query: 16 QFNEKVEVLSQQ----SNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRIGGA 71
+ ++V+ L Q + LQEL L + Q + E + + +++ AG +
Sbjct: 6 KMGDRVDALETQMGNVTTTLQELALQVQQQSLILAELSKQIEKRRDTSEEGASAGDSAQS 65
Query: 72 LVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLE 131
+ ++ + G++P + I R E Y + + + LA ++G + W++ L
Sbjct: 66 ESRLAGKKVKLPLFDGDDPVAWITRAEIYFDVQDTSDDMRVKLARLSMEGSTIHWFNLLM 125
Query: 132 QTMGNMTWAQFKRALVTQFGT------FEDGDAVGTQN------------------LPES 167
+T ++W KRAL+ ++G FE+ + + LPE
Sbjct: 126 ETEDELSWENLKRALIARYGGRRLENPFEELSTLRQKGSVEEFVEAFELLSSQVGRLPEE 185
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARF------------------------- 202
++ F+SGL+ I+ V+ L P + ++ +A+
Sbjct: 186 QYLGYFMSGLKPQIRRRVRTLNPRNRMEMMRIAKDVEDELKEEDDEGEHREVKKGGYERV 245
Query: 203 -QEEYAAVSNRRIPPRPS------MSRPSPPLLNSSPTITKTGG-----SSQPSLLGPPP 250
Q+++A + ++ P+P S S P + P + T SS + G P
Sbjct: 246 GQKDWAGLLMKKGGPQPRDATRSFQSGGSNPSQKTGPNGSNTNSTSSLFSSARRVDGGPR 305
Query: 251 PG----LPPFRRLSVAEQTERRAKGLCFNCDEQFKPG-HRC--KAPQLLLL-DADIEDKD 302
G R + E ERRAKGLCF C ++ P H+C +A ++L+L + + K+
Sbjct: 306 SGTTDRWKGIRSIHNEEFEERRAKGLCFKCGGKYHPTFHKCLERALRVLILGEGETMTKE 365
Query: 303 EQAEALEELPETLEVS-------LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
+ +++++ E + L +TMR++G + + +LIDS ++H F+
Sbjct: 366 GEIVSMKDVTVESEEEVEVECKLMGVLGSMGESHTMRVEGKIHNVDLLVLIDSGASHNFI 425
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDI 415
+ + G +T T + + DG + ++G C V + G + +D +L + G D+
Sbjct: 426 SPKVTTALGLVITPTVAKSIKLGDGHRLITNGVCKGVNMQMGGIEVIVDALVLELGGMDM 485
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
VLG WLR+LG ++ D+ +TMQF+++ + V L G S
Sbjct: 486 VLGVAWLRTLGNVIMDWKAMTMQFSYEHELVTLQGQGS 523
>gi|259490591|ref|NP_001159320.1| uncharacterized protein LOC100304412 [Zea mays]
gi|223943397|gb|ACN25782.1| unknown [Zea mays]
Length = 725
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 175/397 (44%), Gaps = 65/397 (16%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+L F + G+NP I+RCE Y + + + +A +L W+ +E+ ++
Sbjct: 173 KLPFPIFDGDNPRLWIYRCESYFDMYEVEPEAWVKVASMYLAPHVACWFQSVERKQPRLS 232
Query: 139 WAQFKRALVTQFG----------------------------TFEDGDAVGTQNLPES-FF 169
W R L +FG T D AV +++P+ FF
Sbjct: 233 WPLLCRLLHERFGRDQYQSLLRQLFRIHQQSSVTDYQDRFVTLVDQLAV-YESVPDPLFF 291
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
+ F+ GLR DI+ V + +P L LA QEE A S R + +
Sbjct: 292 ATRFVDGLRTDIRAVVMLQRPLDLDSACSLALLQEEVALPSGRHEHRKEAYQ-------- 343
Query: 230 SSPTITKTGGSSQPSLLGPPPP--------------GLPPFRRLSVAE-QTERRAKGLCF 274
P + S++P L PPP G+P +A + RRA+GLC
Sbjct: 344 --PWLKSATASARPMQLPPPPTSSLHKPESYQKKRDGVPSSVDGKLAALKAYRRARGLCD 401
Query: 275 NCDEQFKPGHRCKAP-QL--------LLLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
C E++ GH C A QL LL + ED + LEE P + +S +A+TG+
Sbjct: 402 RCAEKWHRGHTCNATVQLHALQEVWELLSENSGEDSSIHEQTLEE-PIIMAISAEAVTGS 460
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + +MR G++ + IL+DS STH F+N S + + T F+V VA+GG++S
Sbjct: 461 SAKRSMRFLGSMLGKDILILVDSGSTHSFINQSTVQHHTIVPVAATPFRVQVANGGLLSC 520
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
H + QG +F D +LP+ D++LG +WL
Sbjct: 521 DKMIPHAVWSIQGCEFSQDLRVLPLPKFDLILGMDWL 557
>gi|242077302|ref|XP_002448587.1| hypothetical protein SORBIDRAFT_06g029685 [Sorghum bicolor]
gi|241939770|gb|EES12915.1| hypothetical protein SORBIDRAFT_06g029685 [Sorghum bicolor]
Length = 797
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 181/411 (44%), Gaps = 38/411 (9%)
Query: 74 QPRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQ 132
P+H + DF G +P + +CE Y R + + + +A HLD A W+ L+
Sbjct: 123 HPKHKKWDFPHFDGTTDPMLFLNKCEAYFRQHRTMAEERVRMASYHLDDAAQLWFIQLQD 182
Query: 133 TMGNMTWAQFKRALVTQFG-------TFEDGDAVGTQN-----------------LPESF 168
G W FK L +FG FE + T+ L E+
Sbjct: 183 DEGTPMWVNFKDLLNLRFGPPLRSAPMFELAECRRTRTVEEYANRFQALLPRAGRLDEAQ 242
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE----EYAAVSNRRIPPRPSMSRPS 224
+ F GLR + V++ P SL LAR E E+ A R PPR + +
Sbjct: 243 RVQLFTGGLRPPLSSTVRLHNPDSLAAAISLARQVELMELEHPAPVPSRAPPRGLSAPAA 302
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH 284
L P + + G RRL+ E ERR +GLCFN +E+F GH
Sbjct: 303 RAALPPPPPLLALPAPPAAAQQGHAEGNQ---RRLTPEEMAERRRQGLCFNYNEKFSRGH 359
Query: 285 RCKAPQLLLLDADIEDKDEQAEALEELPETLE-----VSLKALTGATPQNTMRLKGNLKK 339
+L L+ +E D QAE + + + SL A+ G + TM+++ +
Sbjct: 360 NRFCKRLFFLEG-MEIDDAQAEETDAAADAVAQEAPIFSLHAVVGVSVGRTMQVRVRVGS 418
Query: 340 HGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGF 399
+ L+D+ STH F+ + A + G P+ + + VA+G + G H P+
Sbjct: 419 TPLIALLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCLGVIKHAPIAIHDS 478
Query: 400 QFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
F +D F++P++G D+VLG +W+ +LG ++WDF ++ F +G TV+ G
Sbjct: 479 VFAVDLFVMPLAGHDLVLGTQWMATLGRLVWDFVDGSVTFQHQGSTVRWPG 529
>gi|449473450|ref|XP_004153884.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 564
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 15/241 (6%)
Query: 254 PPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP---QLLLL----DADIEDKDEQAE 306
PP +RLS AE R KGLCF C+E++ PGHRCK +L+L + +ED+D E
Sbjct: 142 PPVKRLSDAEFRARLDKGLCFKCNERYSPGHRCKMKDKRELMLFIMNEEESLEDEDRTEE 201
Query: 307 ALEE--------LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSS 358
EE L E E+ LKA+ G T + TM++KG +K V ILIDS +TH F+++
Sbjct: 202 TNEEVLELNQLTLEEGTEIELKAIHGLTSKGTMKIKGEIKGKEVLILIDSGATHNFIHNK 261
Query: 359 LAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLG 418
+ ++ G + T F VT+ DG G C+ + + + DF + + D++LG
Sbjct: 262 IVEEVGLELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDVILG 321
Query: 419 AEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQ 478
+WL + G + + LTM F + L G SL A + I + ++ QG +
Sbjct: 322 MQWLNTTGTMKIHWPSLTMTFRMGKKQFILKGDPSLIRAECSLKTIEKTWEEDDQGFLLE 381
Query: 479 I 479
+
Sbjct: 382 M 382
>gi|449470602|ref|XP_004153005.1| PREDICTED: uncharacterized protein LOC101220479 [Cucumis sativus]
Length = 583
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 210/502 (41%), Gaps = 88/502 (17%)
Query: 15 HQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQ-------------Q 61
Q E+VE ++ L+E++L + R ++ N + + +
Sbjct: 4 RQIEERVEGTEKEIMSLKEMMLEMKKSMDRMTDELRENHGAKKKEEAGTTDDIRLKLKGK 63
Query: 62 PEPAGRI----GGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIG 117
E AG G + + ++ +L+ + +G NP S +R E + + L E + + +A+
Sbjct: 64 LEEAGTTVESGGSSADRSKYKKLEMPLFTGVNPESWAYRAEHFFDINDLPEAEKVKVAVV 123
Query: 118 HLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDG--DAVGTQ------------- 162
+ V W+ W + +W K + F F D ++G +
Sbjct: 124 SFGQEEVDWFRWSNRRKRVESWEDLKERM---FDFFNDTGQQSLGARLIRIKQEVSYSEY 180
Query: 163 ------------NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVS 210
++ ES + FL+GL ++ V P +L + + A+ V+
Sbjct: 181 VKKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECIKEAQL------VN 234
Query: 211 NRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAK 270
+R I + +M S L S K G Q + RLS T + K
Sbjct: 235 DRNIALQLAMDELSRFELKRS----KNTGKIQVN-------------RLS---DTAKLDK 274
Query: 271 GLCFNCDEQFKPGHRCKAPQ---LLLLDADIEDKDEQ------AEALEELPETLE----- 316
GLCF C+E++ GH+CK + L+LL + E+ +E+ P LE
Sbjct: 275 GLCFRCNEKYSLGHKCKVREKRELMLLILNEEESNEKEATIEDEVEEVIEPNHLELNMDN 334
Query: 317 -VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
+ L+ +TG T + TM+LKG++ V ILIDS +T+ F++ L + + T+F V
Sbjct: 335 PIELRLITGVTSKGTMKLKGHVNGREVVILIDSGATNNFISQVLVDELQLSIDPGTRFGV 394
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
T+ +G SG C V V + DF + + D+VLG +WL S G + + L
Sbjct: 395 TIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMKVHWPSL 454
Query: 436 TMQFTWKGQTVQLTGYDSLPPA 457
TM F KG+ + L G SL +
Sbjct: 455 TMTFWMKGRRIILKGDPSLTKS 476
>gi|307136175|gb|ADN34016.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
Length = 1185
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 166/412 (40%), Gaps = 50/412 (12%)
Query: 92 SLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFG 151
SL E Q+ + ++ + L+G + W+ W E +W + K + +F
Sbjct: 83 SLSVETEAGQKRFKFRKLEMPVFNVVSLEGRGMNWFRWAENRKWFRSWKELKERMYNRFR 142
Query: 152 TFEDGDAVGT------------------------QNLPESFFISCFLSGLREDIKIGVQM 187
+ G A + E F +GL I+ V
Sbjct: 143 CRDYGTACARFLAIKQEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFA 202
Query: 188 LKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTI------------- 234
++ L E A+ EE A V+ P P + L SSP
Sbjct: 203 MRVVGLEDLMEAAQLAEEKAEVTKGGPYPYPYSKEAAKTNLGSSPKTFGSPPTKMVTLAK 262
Query: 235 -----TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
T +SQ +G P +RR ++ R+ KGLC+ CD+ F GHRCK
Sbjct: 263 KVVNQTSNSNTSQSHTVGGGGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNR 322
Query: 290 QLLL-------LDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV 342
+L L +D ++ ++D +E P +E+SL ++ G T T ++KG ++ V
Sbjct: 323 ELKLCVVADDLIDTEMSEEDNDGGMVEIGP-IVELSLSSVVGLTAPGTSKIKGKVEDREV 381
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
++ID +TH F++ L ++ T TTQ+ V + G + G C+ V V G
Sbjct: 382 VVMIDCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTGVVVGLPGLTVV 441
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
DF L + D+VLG +WL GA+ D+ L M F + V L G SL
Sbjct: 442 EDFLPLELGHLDMVLGMQWLPKQGAMTVDWRNLAMTFAVRDVKVMLRGDLSL 493
>gi|116308903|emb|CAH66035.1| H0515C11.11 [Oryza sativa Indica Group]
Length = 499
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 181/429 (42%), Gaps = 80/429 (18%)
Query: 52 NQPLQINNQQPEPAGRIGGALVQPRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETD 110
+ P +QP+ G A PR +L+F G E+P + CEQ+ R TD
Sbjct: 92 SSPPPHTTEQPD----TGSATGVPRFYKLEFPKYDGKEDPLNWFNHCEQFFRGQKTPATD 147
Query: 111 VLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGT--------- 161
+ LA HL GDA WY E G TW +FK FG + +G
Sbjct: 148 WVWLATYHLTGDAQEWYFHYEIHHGPPTWEEFKDLCHGHFGPPIHRNPLGEMKRLMQTSS 207
Query: 162 ----------------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE 205
+ L + I F +GLR+++ + V++ +P L + LAR E
Sbjct: 208 VAVYQTKFLALASRTFEALSDKQQIQLFTAGLRDELAVDVELHQPDDLQEAMSLARAYER 267
Query: 206 YAA-VSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQ 264
A+ + N PP P P N + T + S+ P FRRLS AE
Sbjct: 268 KASKLGNASRPP------PRQPFRNVAST-SALANSALPGTDAMVDATPRQFRRLSPAEL 320
Query: 265 TERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLE--VSLKAL 322
ERR +GLC+NCDE+F H+C +L ++ D E + A +T E VSL AL
Sbjct: 321 AERRRQGLCYNCDEKFVRDHKCA--RLFHIEYD-ETASDDDAAPAGDADTDEPRVSLNAL 377
Query: 323 TGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV 382
+G NTMRL C + + + +
Sbjct: 378 SGVDGANTMRLP------------------------------CARISASWWPT-----AI 402
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
+ + + + + G +FH+D F+L V DI+LG EWLRSLG ILW+F + M W+
Sbjct: 403 VWRAQAFAAICLTIDGERFHVDCFVLEVYAIDIILGTEWLRSLGPILWNFRNMRMAI-WR 461
Query: 443 GQTVQLTGY 451
G T ++T Y
Sbjct: 462 G-TREVTLY 469
>gi|208609049|dbj|BAG72147.1| hypothetical protein [Lotus japonicus]
gi|208609053|dbj|BAG72149.1| hypothetical protein [Lotus japonicus]
Length = 1520
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 228/541 (42%), Gaps = 74/541 (13%)
Query: 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQED-----RNNNQPL 55
+T +E RV+ L E EV +Q +L+ L LS + R + + R++ +
Sbjct: 3 LTRGAMESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHN 62
Query: 56 QINNQQPEPAGRIG---GALVQPRHI------------------RLDFLVLSGENPTSLI 94
++ + R G G+ R R+D + +G + +
Sbjct: 63 SVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWV 122
Query: 95 FRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF---- 150
+ E++ RL+ + E + + + + ++ A+ W+ W E+ W FK+AL +F
Sbjct: 123 TKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPAL 182
Query: 151 ---------GTFEDGD-----------AVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
+ G A +N FL+GL+E+IK ++ L P
Sbjct: 183 LQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMK-LYP 241
Query: 191 ASLLQTFE-----LARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSL 245
A + + + R Y ++ N ++ GG+
Sbjct: 242 AHGGRYYSSTGDSMGRIANSYVNFQSKGGTGNQD---------NEGKSLQNKGGTGNQDT 292
Query: 246 LGP-PPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC--KAPQLLLLDADIEDKD 302
G P +RL+ E ER KGLCF C +++ H C K QL+L++ + ++++
Sbjct: 293 EGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEE 352
Query: 303 EQAEALEELPE------TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
E+ E E L++SL + G T + ++KG + V ILID +T F++
Sbjct: 353 EEIFEEAEDWEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFIS 412
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
L + PV T+++ V V +G +SG C ++ + QG FF+L + G ++V
Sbjct: 413 QDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVV 472
Query: 417 LGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIF 476
LG +WL SLG I +F +L +Q+ +GQ + L G S+ AN I QE +G +
Sbjct: 473 LGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYY 532
Query: 477 F 477
Sbjct: 533 L 533
>gi|12322951|gb|AAG51467.1|AC069160_13 hypothetical protein, 5' partial [Arabidopsis thaliana]
Length = 368
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 151/298 (50%), Gaps = 22/298 (7%)
Query: 163 NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSR 222
NL E ++ +L GL+ D +I V+M +P S+ Q L R E+ P + S++
Sbjct: 43 NLSEESLVNAYLKGLQLDTQINVRMFQPHSIHQCLMLGRGYEKAH-------PKKNSLNN 95
Query: 223 PSPPLLNSSPTITKTGGSSQP----------SLLGPPPPGLPPFRRLSVAEQTERRAKGL 272
+ + + +K SS+P S+ P P P + LS+ ++++ K L
Sbjct: 96 CCVAKWSENNSQSKGILSSKPEHVHNTVLLTSMERPKDPTTQPHKVLSIEDRSKNNQK-L 154
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
C+ DE++K R +A + +E+ + LE+ +S+ A++G + TMR
Sbjct: 155 CYFGDEKYKET-RFEAEED---SGKMEEVHMEKVELEKTGIVAHISVNAISGVSDYRTMR 210
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
+KG +K ++ILID STH F++S +A++ C + + QV+VADG ++ + K
Sbjct: 211 VKGLYEKQVLSILIDPDSTHSFMDSKVAEKLKCVLKPASMAQVSVADGRLLGLNAKIDKF 270
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+G Q D ++ + GCD+VLGA+WL +LG I DF K MQF + V L G
Sbjct: 271 QWELRGTQLQADLMVITLRGCDMVLGAQWLETLGPITCDFKKSVMQFHIGQKKVPLQG 328
>gi|449511951|ref|XP_004164098.1| PREDICTED: uncharacterized protein LOC101232566 [Cucumis sativus]
Length = 707
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 127/538 (23%), Positives = 227/538 (42%), Gaps = 75/538 (13%)
Query: 8 ERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQ----PLQINNQQPE 63
ER Q+ +F +E +Q+ + + E I L IR +NN+ ++ N + E
Sbjct: 37 ERQNQMMIRF---MESAAQERSTMNEKITELS---IRSTPMKNNDDGEGSSIRENEPKKE 90
Query: 64 PAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDA 123
A ++ + +G++P S +FR E+Y ++ L + + +++A +G A
Sbjct: 91 EVKSNEDANGDRNKFSVEMPIFNGDDPDSWLFRAERYFQIHKLTDFEKMTVATISFEGPA 150
Query: 124 VPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGD------------------------AV 159
+ WY E+ + WA K ++ +F + +G
Sbjct: 151 LNWYRSQEERDKFVDWANLKERVLVRFRSTREGSLYERFLRIQQTTTVEEYRNLFDKLVA 210
Query: 160 GTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR-IPPRP 218
+L + F+ GL+ I+ + +P L Q +A+ V NR I
Sbjct: 211 PLSDLADKVVEETFMLGLKPWIQAEMDFCEPQGLSQMMRIAQ------KVENREDIRREA 264
Query: 219 SMSRPSPPLLNSSPTITK--TGGSSQPS------------LLGPPPPGLPPF---RRLSV 261
++ S LN+S + K T G+S S L G + +RLS
Sbjct: 265 NLPGYSGAKLNNSGSGNKNSTMGNSGESKGNWNWPMRTITLRGTADEEVRKTGLTKRLSD 324
Query: 262 AEQTERRAKGLCFNCDEQFKPGHRCKAPQ------LLLLDADIEDKDEQ----------- 304
AE R+ KGLCF C+E++ H+CK + L+++ + E + +
Sbjct: 325 AEFQSRKEKGLCFRCNEKYSHDHKCKMKEQRELRMLVVMGENEEYEIIEEEEVEQKELSV 384
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
AE ++E +E+S+ ++ G + TM++KG L + +LID +TH F+ L ++
Sbjct: 385 AEVIQEEHAVVELSINSVVGLSNPRTMKVKGKLLGRQIIVLIDCEATHNFIREGLVEELQ 444
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS 424
+TT + V + G I G C + + ++ DF L + G D +LG +WL S
Sbjct: 445 ISTKSTTNYGVILGSGTAIKGKGVCEAIEMMIGEWRVIDDFLPLELGGVDAILGMQWLYS 504
Query: 425 LGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAI 482
LG D+ L + FT G+ V + G SL A + + + + QG + A+
Sbjct: 505 LGITEVDWKNLILTFTHHGEKVVIRGDPSLTKARVSLKALMKSWGDKDQGFLVECRAL 562
>gi|242085388|ref|XP_002443119.1| hypothetical protein SORBIDRAFT_08g009520 [Sorghum bicolor]
gi|241943812|gb|EES16957.1| hypothetical protein SORBIDRAFT_08g009520 [Sorghum bicolor]
Length = 1595
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 255 PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDAD---IEDKDEQAEALE-- 309
PFRRL+ AEQ ERR +GLC+NCDE + PGH C+ +L LD D +ED +A
Sbjct: 457 PFRRLTPAEQAERRRQGLCYNCDEPYVPGHVCQ--RLFYLDVDDYVVEDAVPVGDAAAAA 514
Query: 310 ---------ELPET--LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSS 358
ELP VSL A+ G +NTM L +K + L+D+ STH FL +
Sbjct: 515 ALREEPAAPELPNANAFVVSLHAVAGIRTENTMLLPVLVKGERLLALLDTGSTHNFLRGT 574
Query: 359 LAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLG 418
++ G Q +VTVA+G + G VP++ G F + L + D++LG
Sbjct: 575 TMRRLGLSPAGGEQLRVTVANGDRLPCEGIAHDVPISIAGEVFSITCVGLDLGSFDLILG 634
Query: 419 AEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
++LR+LG ILWDF +TM F+ +G+ + G
Sbjct: 635 VDYLRTLGPILWDFGAMTMAFSRQGRRILWRG 666
>gi|242085390|ref|XP_002443120.1| hypothetical protein SORBIDRAFT_08g009530 [Sorghum bicolor]
gi|241943813|gb|EES16958.1| hypothetical protein SORBIDRAFT_08g009530 [Sorghum bicolor]
Length = 1574
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 255 PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDAD---IEDKDEQAEALE-- 309
PFRRL+ AEQ ERR +GLC+NCDE + PGH C+ +L LD D +ED +A
Sbjct: 457 PFRRLTPAEQAERRRQGLCYNCDEPYVPGHVCQ--RLFYLDVDDYVVEDAVPVGDAAAAA 514
Query: 310 ---------ELPET--LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSS 358
ELP VSL A+ G +NTM L +K + L+D+ STH FL +
Sbjct: 515 ALREEPAAPELPNANAFVVSLHAVAGIRTENTMLLPVLVKGERLLALLDTGSTHNFLRGT 574
Query: 359 LAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLG 418
++ G Q +VTVA+G + G VP++ G F + L + D++LG
Sbjct: 575 TMRRLGLSPAGGEQLRVTVANGDRLPCEGIAHDVPISIAGEVFSITCVGLDLGSFDLILG 634
Query: 419 AEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
++LR+LG ILWDF +TM F+ +G+ + G
Sbjct: 635 VDYLRTLGPILWDFGAMTMAFSRQGRRILWRG 666
>gi|218186024|gb|EEC68451.1| hypothetical protein OsI_36669 [Oryza sativa Indica Group]
Length = 554
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 184/433 (42%), Gaps = 55/433 (12%)
Query: 57 INNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
I N Q E G PR + +F G+NP + E+Y + + S
Sbjct: 122 IGNSQFETQG--------PRLPKTEFPKFDGDNPKLSKKKSEKYFDMYQVPYATWASFGT 173
Query: 117 GHLDGDAVPWYHWLEQTMGNMTW--------AQFKRALVTQF----------GTFEDGDA 158
H G+A W E+ +W +F R QF GT E+ +
Sbjct: 174 LHFVGNAALWLQTYEELHAVESWLELCVAVNGKFGRDRYQQFLEKLDNLKQEGTIEEYYS 233
Query: 159 ----------VGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAA 208
V + E+FF++ FL GL+ +IK +++ +P ++ LA+ QEE
Sbjct: 234 RFEELMHKVLVYNRGYDETFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLM 293
Query: 209 VSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGL------PPFRRLSVA 262
N + + +M N+ + G +LGPPP + P + +
Sbjct: 294 EVNLKAYHKTTMKES---FKNNFKVPSPAKG-----ILGPPPDEIKKTEERPKWEERYDS 345
Query: 263 EQTERRAKGLCFNCDEQFKPGHRC-KAPQLLLLDADIED---KDEQAEALEELP-ETLEV 317
RRA+G CF C E+F PGH+C KA QL +LD +E DE + E E L +
Sbjct: 346 LNAARRARGECFKCGEKFGPGHKCQKAVQLHVLDELLEVFQFSDEPGQVEESSSDEELLL 405
Query: 318 SLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTV 377
S AL G + T+RL+G + V ILIDS S+ F+ S L + + V +
Sbjct: 406 SENALFGTEGKRTIRLQGLIGNQQVLILIDSGSSSSFMASHLVDRLHLVPNSIPSALVMI 465
Query: 378 ADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTM 437
DGG + V QG F +F +L + G D++LG +WL + + + + T+
Sbjct: 466 VDGGKLFCDEMAEQVEWWCQGNTFSSNFKILGLGGYDLILGMDWLEAHSPMWIHWGRKTV 525
Query: 438 QFTWKGQTVQLTG 450
+FT G+ + L G
Sbjct: 526 RFTHSGKDITLQG 538
>gi|208609055|dbj|BAG72150.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 132/569 (23%), Positives = 232/569 (40%), Gaps = 92/569 (16%)
Query: 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQED-----RNNNQPL 55
+T +E RV+ L E EV +Q +L+ L LS + R + + R++ +
Sbjct: 3 LTRGAMESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHN 62
Query: 56 QINNQQPEPAGRIG---GALVQPRHI------------------RLDFLVLSGENPTSLI 94
++ + R G G+ R R+D + +G + +
Sbjct: 63 SVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWV 122
Query: 95 FRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF---- 150
+ E++ RL+ + E + + + + ++ A+ W+ W E+ W FK+AL +F
Sbjct: 123 TKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPAL 182
Query: 151 ---------GTFEDGD-----------AVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
+ G A +N FL+GL+E+IK +++
Sbjct: 183 LQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPA 242
Query: 191 ASLLQTFELA--------------------RFQEEYAAVSNRRIPPR-PSMSRPSPPLLN 229
L + + A R +E V R S R + +N
Sbjct: 243 DDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSKGRIANSYVN 302
Query: 230 ------------SSPTITKTGGSSQPSLLGP-PPPGLPPFRRLSVAEQTERRAKGLCFNC 276
++ GG+ G P +RL+ E ER KGLCF C
Sbjct: 303 FQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
Query: 277 DEQFKPGHRC--KAPQLLLLDADIEDKDEQAEALEELPE------TLEVSLKALTGATPQ 328
+++ H C K QL+L++ + ++++E+ E E L++SL + G T
Sbjct: 363 GDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSN 422
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+ ++KG + V ILID +T F++ L + PV T+++ V V +G +SG
Sbjct: 423 RSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGV 482
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
C ++ + QG FF+L + G ++VLG +WL SLG I +F +L +Q+ +GQ + L
Sbjct: 483 CKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVL 542
Query: 449 TGYDSLPPALANHGEINQLLLQEKQGIFF 477
G S+ AN I QE +G +
Sbjct: 543 QGEPSVCRVTANWKSIKITEQQEAEGYYL 571
>gi|208609051|dbj|BAG72148.1| hypothetical protein [Lotus japonicus]
gi|208609062|dbj|BAG72153.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 132/569 (23%), Positives = 232/569 (40%), Gaps = 92/569 (16%)
Query: 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQED-----RNNNQPL 55
+T +E RV+ L E EV +Q +L+ L LS + R + + R++ +
Sbjct: 3 LTRGAMESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHN 62
Query: 56 QINNQQPEPAGRIG---GALVQPRHI------------------RLDFLVLSGENPTSLI 94
++ + R G G+ R R+D + +G + +
Sbjct: 63 SVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWV 122
Query: 95 FRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF---- 150
+ E++ RL+ + E + + + + ++ A+ W+ W E+ W FK+AL +F
Sbjct: 123 TKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPAL 182
Query: 151 ---------GTFEDGD-----------AVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
+ G A +N FL+GL+E+IK +++
Sbjct: 183 LQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPA 242
Query: 191 ASLLQTFELA--------------------RFQEEYAAVSNRRIPPR-PSMSRPSPPLLN 229
L + + A R +E V R S R + +N
Sbjct: 243 DDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSKGRIANSYVN 302
Query: 230 ------------SSPTITKTGGSSQPSLLGP-PPPGLPPFRRLSVAEQTERRAKGLCFNC 276
++ GG+ G P +RL+ E ER KGLCF C
Sbjct: 303 FQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
Query: 277 DEQFKPGHRC--KAPQLLLLDADIEDKDEQAEALEELPE------TLEVSLKALTGATPQ 328
+++ H C K QL+L++ + ++++E+ E E L++SL + G T
Sbjct: 363 GDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSN 422
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+ ++KG + V ILID +T F++ L + PV T+++ V V +G +SG
Sbjct: 423 RSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGV 482
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
C ++ + QG FF+L + G ++VLG +WL SLG I +F +L +Q+ +GQ + L
Sbjct: 483 CKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVL 542
Query: 449 TGYDSLPPALANHGEINQLLLQEKQGIFF 477
G S+ AN I QE +G +
Sbjct: 543 QGEPSVCRVTANWKSIKITEQQEAEGYYL 571
>gi|208609057|dbj|BAG72151.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 132/569 (23%), Positives = 232/569 (40%), Gaps = 92/569 (16%)
Query: 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQED-----RNNNQPL 55
+T +E RV+ L E EV +Q +L+ L LS + R + + R++ +
Sbjct: 3 LTRGAMESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHN 62
Query: 56 QINNQQPEPAGRIG---GALVQPRHI------------------RLDFLVLSGENPTSLI 94
++ + R G G+ R R+D + +G + +
Sbjct: 63 SVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWV 122
Query: 95 FRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF---- 150
+ E++ RL+ + E + + + + ++ A+ W+ W E+ W FK+AL +F
Sbjct: 123 TKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPAL 182
Query: 151 ---------GTFEDGD-----------AVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
+ G A +N FL+GL+E+IK +++
Sbjct: 183 LQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPA 242
Query: 191 ASLLQTFELA--------------------RFQEEYAAVSNRRIPPR-PSMSRPSPPLLN 229
L + + A R +E V R S R + +N
Sbjct: 243 DDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSKGRIANSYVN 302
Query: 230 ------------SSPTITKTGGSSQPSLLGP-PPPGLPPFRRLSVAEQTERRAKGLCFNC 276
++ GG+ G P +RL+ E ER KGLCF C
Sbjct: 303 FQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
Query: 277 DEQFKPGHRC--KAPQLLLLDADIEDKDEQAEALEELPE------TLEVSLKALTGATPQ 328
+++ H C K QL+L++ + ++++E+ E E L++SL + G T
Sbjct: 363 GDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSN 422
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+ ++KG + V ILID +T F++ L + PV T+++ V V +G +SG
Sbjct: 423 RSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGV 482
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
C ++ + QG FF+L + G ++VLG +WL SLG I +F +L +Q+ +GQ + L
Sbjct: 483 CKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVL 542
Query: 449 TGYDSLPPALANHGEINQLLLQEKQGIFF 477
G S+ AN I QE +G +
Sbjct: 543 QGEPSVCRVTANWKSIKITEQQEAEGYYL 571
>gi|449457325|ref|XP_004146399.1| PREDICTED: uncharacterized protein LOC101219499 [Cucumis sativus]
Length = 718
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 46/349 (13%)
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEY----------AAVSNRRIPPRPSMSR 222
F++GL IK V KP L + A+ E + + PP S+ +
Sbjct: 204 FMNGLFPWIKAEVVFCKPVGLAEMMHAAQLVENREILRKEANLNGYATGKYPPPNSSIIK 263
Query: 223 PSPPLLNS-----------SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG 271
S + NS + T+ T G + P +RL AE R+ KG
Sbjct: 264 SSAAMNNSENQGNTIFPMRTVTLRTTAGEVKKE---------GPTKRLPDAEFQARKEKG 314
Query: 272 LCFNCDEQFKPGHRCKAPQLLLLDADIEDK------------DE-QAEALEELPE---TL 315
LCF C+E++ GHRC+ + L + + DE ++ +E PE +
Sbjct: 315 LCFRCNEKYFHGHRCRGREQRELRMYVVKEDEEYEIVEEAEWDETESNCVEINPEDQAIV 374
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
E+S+ ++ G T TM+++G +K V ILID +TH F++ + ++ P TT+ + V
Sbjct: 375 ELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGV 434
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
+ G + G C + + +G++ +F L + G D VLG +WL SLG D+ L
Sbjct: 435 ILGSGAAVKGKGICEGIELELEGWKVEANFLPLELGGVDGVLGMQWLYSLGVTEVDWKNL 494
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITT 484
TM F G+ V++ G SL A+ + + QG + A+ T
Sbjct: 495 TMTFLHNGKKVKIKGDPSLTKAMVGLKNMIKSWKDSDQGFLIECRAMET 543
>gi|110289541|gb|AAP54937.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1477
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 115/454 (25%), Positives = 200/454 (44%), Gaps = 72/454 (15%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW----- 139
+G+NP CE Y + + + +A + G+A W + + +TW
Sbjct: 139 FNGDNPQMWKANCEVYFNVYGIPPGQWVKVATLNFVGNAAFWLQSVRNQLIGITWFDLCE 198
Query: 140 ---AQFKR----ALVTQFGTFEDGDAVG----------------TQNLPESFFISCFLSG 176
A+F R A+V Q+ ++V Q +P +F++ F+ G
Sbjct: 199 RVCARFTRDRHEAMVRQYIHIRQTNSVSEYVERFDCLMHRLLAYDQTVPALYFVTKFVDG 258
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEE-----------------YAAVSNRRIPPRPS 219
L+++++ V M++P + LA QEE Y S++ P S
Sbjct: 259 LKDEVRRSVMMMRPQDMDVACSLALLQEEAMEGSRPTPYKRTEGSNYVKTSSKLTAPTLS 318
Query: 220 MSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQ 279
M+R P +N+ +T S++P RL+ A + RR+KGLCF C E+
Sbjct: 319 MTR-EPNQINTEER--RTADSNRPKE-----------DRLA-ALKAYRRSKGLCFTCGER 363
Query: 280 FKPGHRCK-APQLLLLDADIE----DKDEQAEALEELPE-----TLEVSLKALTGATPQN 329
+ H+C A QL ++ +E D E + E PE + +S +AL G +N
Sbjct: 364 WGRDHKCATAVQLHVVQELLEVLQGDSGEDSPT-ESSPEREDIIVMAISQQALNGTESRN 422
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
++RL+G ++ + +LIDS S+H F++ + K T +V +ADGG + S
Sbjct: 423 SIRLRGWIQGTELLMLIDSGSSHSFIDEKIGKSMSGVKLLTKPLKVQIADGGELVCSQVI 482
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
+ +QG F DF L+P+ G DI+LG +WL + + ++F ++ Q +++
Sbjct: 483 PNCSWWTQGHNFSNDFKLIPLGGYDIILGMDWLEQYSPMKIYWVNKWVEFQYQNQWLRVL 542
Query: 450 GYDSLPPALANHGEINQLLLQEKQGIFFQIMAIT 483
G S + A + QL+ K G ++ IT
Sbjct: 543 GISSSTTSYAE-ISVEQLMSLAKMGSIMYMVKIT 575
>gi|242095940|ref|XP_002438460.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor]
gi|241916683|gb|EER89827.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor]
Length = 1437
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 116/215 (53%), Gaps = 1/215 (0%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLE 316
+RLS EQ ERR GLC+NC+E + GH ++ +D +E D++A + P
Sbjct: 264 KRLSTEEQAERRRLGLCYNCNEPYSRGHNRVCRRIFFIDG-VELADDEAVPDDAEPAAPV 322
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
SL+A+TG +TM+++ + +T L+D+ STH F+ + A + G PV + T
Sbjct: 323 FSLRAVTGMPICDTMQVRVAVGDVTLTALLDTGSTHNFIAETAATRTGLPVLADPRLTAT 382
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
VA+G I+ G P+ G F +D ++LP++G D+VLG +WL +LG I WDF+ T
Sbjct: 383 VANGERIACPGVLRQAPIIIDGEGFCVDLYVLPLAGYDLVLGTQWLVTLGRIEWDFTART 442
Query: 437 MQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+ FT + + V + + PAL LL E
Sbjct: 443 LSFTRQDRRVCWSDVATPTPALTAAVTAPTTLLDE 477
>gi|449501536|ref|XP_004161395.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 740
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 115/439 (26%), Positives = 178/439 (40%), Gaps = 63/439 (14%)
Query: 98 EQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGD 157
E + ++ L E + + +A+ D V WY W +W K + F F+D
Sbjct: 52 EHFFKINNLPENEKIKVAVVSFGQDEVDWYRWTHNRKRVESWEDLKGRM---FEFFKDS- 107
Query: 158 AVGTQNLPESFFISCFLSGLREDIKIGVQMLKP-----ASLLQTFELARFQEEYAAVSNR 212
G ++L I + +K V P SLL+ L R + A
Sbjct: 108 --GQKSLVARLIIIQQDDSYSDYVKKFVTYSAPLPHMEESLLRDAFLIRLEPNLQAEVVS 165
Query: 213 RIPPRPSMSRPSPPLLNS---SPTITKTGGS-----SQPSLLGPPPPGL----------- 253
R P L+N + T+TK G +G G+
Sbjct: 166 RYPQTLEDCMREAQLVNDRNMALTMTKAEGKMIEYKKGEGSVGKAQEGMEKGVVRKTDFP 225
Query: 254 ----------------PPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ---LLLL 294
PP +RLS AE R KGLCF C+E++ GHRC+ + L+L
Sbjct: 226 MKQVTIPIKGNYQRSEPPVKRLSDAEFRSRLDKGLCFKCNEKYSSGHRCRMKEKRELMLF 285
Query: 295 DADIEDK-------DEQAEALEELP-----ETLEVSLKALTGATPQNTMRLKGNLKKHGV 342
+ E+ E EA+ EL + E+ L +TG T + TM+L+G ++ V
Sbjct: 286 IMNEEEGNEEENMIKENTEAVLELNNLDLNKKKEIELNTITGLTSKGTMKLRGEIEGREV 345
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
+LIDS +TH F++ + ++ P T F T+ DG G C + V QG
Sbjct: 346 VVLIDSGATHNFVHYKIIEEMKIPSEADTTFAATIGDGTCCKGRGLCKRLEVKLQGITVV 405
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQT-VQLTGYDSLPPALANH 461
DF L+ + D +LG +WL + G + + LTM F W G+ ++L G SL A +
Sbjct: 406 ADFLLIELGNVDAILGMQWLDTTGTMKIHWPSLTMSF-WVGRKQIELKGDPSLIRAECSL 464
Query: 462 GEINQLLLQEKQGIFFQIM 480
I + +E QG ++
Sbjct: 465 KTIEKTWEKEDQGFLLSLL 483
>gi|32492359|emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
Length = 1586
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 187/455 (41%), Gaps = 73/455 (16%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
RL+ + SGE+P + +CE++ ++ ++LAI HL G A+ WY + +T
Sbjct: 207 RLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPWQLIT 266
Query: 139 WAQFKRALVTQFGTFEDGDAVGT-QN----------------------------LPESFF 169
W Q+ + T+F + +AV QN L E +
Sbjct: 267 WPQWCAMVSTRFSAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRREHPYLQEQYL 326
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
SCF+ GLR DIK V KP LL+++ + + Y +N R LLN
Sbjct: 327 NSCFIGGLRGDIKHDVCGHKPQGLLESY---WYTKNYERAANAR-----------KNLLN 372
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
+ +Q P G R EQ E++ + C+ C E + P H+CK
Sbjct: 373 ----FNRNRFQNQAG----PIQGRNVVNRGQPREQVEKKEERKCWFCKEPWFPKHQCKVK 424
Query: 290 QLL-----------------LLDADIED----KDEQAEALEELPETLEVSLKALTGATPQ 328
+ L L + ED K+E E E + VS A+ G T
Sbjct: 425 KALNALLMEGEEGKDEGEEGELTGNQEDCKLEKEEAPPDDENQEELMFVSHNAVYGTTRP 484
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+T + + L+DS ST F++ A + CP+ +T +V VA GG + S +
Sbjct: 485 DTFSVIIQINGRRAVGLVDSGSTSTFMDQDYAVRNHCPLVSTDAKKVVVAGGGELKSEVQ 544
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
+ QG F F ++P+ G D++LGA+W+ I D K + T +TV +
Sbjct: 545 VPELVYQIQGETFSNKFNIIPLKGYDVILGADWIYKYSPITLDLKKRELGITKGEKTVVI 604
Query: 449 TGYDSLPPAL-ANHGEINQLLLQEKQGIFFQIMAI 482
+ L + +++Q+L + G FQI +
Sbjct: 605 QDFTRPGKHLWVDSKKVDQILRKGGLGCLFQITRV 639
>gi|356573714|ref|XP_003555002.1| PREDICTED: uncharacterized protein LOC100810380 [Glycine max]
Length = 1273
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 176/404 (43%), Gaps = 69/404 (17%)
Query: 108 ETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPES 167
++D + + H + D +PW+ L++ W
Sbjct: 109 DSDRVEIPAIHFEKDVIPWFQMLQRMESVNYW---------------------------- 140
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELAR-FQEEYAAVSNRR---IPPRPSM--- 220
L DI+ V +P +L++ L++ ++E+Y V++ R R S+
Sbjct: 141 ---------LNVDIRRDVIAQRPMTLIRVVSLSKLYEEKYQPVNSNRTHNYSHRYSLISA 191
Query: 221 ------SRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCF 274
S PS N++ T+T +++S AE RR KGLC+
Sbjct: 192 HTANFISTPS----NAAENTTQTSLPPLLPTPNTLLLRNNYVKKISPAEMQLRREKGLCY 247
Query: 275 NCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEAL--------EELPETL-----EVSLKA 321
CD++F H+C P L+L +ED +AE + ET+ +SL A
Sbjct: 248 FCDDKFTFNHKC--PNRLMLMLQLEDDKGEAEMSFDVVSRDNNSIAETVIDNPHHLSLNA 305
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
L G T+R ++ V +L+D+ S+ FL +AK + P+ + F+V V +G
Sbjct: 306 LKGGLGGGTIRFVAHINTLPVKVLVDNGSSDNFLQPRVAKFFKLPIEPSPLFKVMVDNGN 365
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
++ G + + +QG +F L FLLP+SG D++LGA WL++LG+ + D+ L ++F
Sbjct: 366 YMTPIGMIRELSIQAQGNRFQLPVFLLPISGADLILGAIWLKTLGSHIADYDSLQIKFLH 425
Query: 442 KGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
G+ + L G D P A+ I +++ + F + I S
Sbjct: 426 DGKFITLQGDDDGTPTQAHLHHIRRMISTDSIAEVFSMQLIEPS 469
>gi|449465222|ref|XP_004150327.1| PREDICTED: uncharacterized protein LOC101216833 [Cucumis sativus]
Length = 2712
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 185/452 (40%), Gaps = 79/452 (17%)
Query: 70 GALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHW 129
GA + + +++ V +GE+P S +FR ++Y ++ H DA
Sbjct: 1074 GANERDKFKKVEMPVFNGEDPDSWLFRADRYFQI--------------HKLSDA------ 1113
Query: 130 LEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLK 189
E+T +F R + +L + F++GL IK V K
Sbjct: 1114 -EKTTVEEYRNEFDRLMAP------------LADLQDRVVEETFMNGLFPWIKAEVVFCK 1160
Query: 190 PASLLQTFELARFQEEYAAV----------SNRRIPPRPSMSRPSPPLLNS--------- 230
P L + A+ E + + PP S+ R S + +S
Sbjct: 1161 PVGLAEMMHAAQLMENREIIRKEANLNGYAKGKYPPPNSSIIRSSAAMNHSEDKGNTIFP 1220
Query: 231 --SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKA 288
+ T+ T G + P +RL AE ++ KGLCF C+E++ GHRCK
Sbjct: 1221 IRTVTLRTTAGEVKKE---------GPTKRLPDAEFQAQKEKGLCFRCNEKYFHGHRCKG 1271
Query: 289 PQLLLLDADIED-------------KDEQAEALEELPE---TLEVSLKALTGATPQNTMR 332
+ L + + + +E PE +E+S+ ++ G T TM+
Sbjct: 1272 REQRELRMYVVKEDEEYEIVEEAEWDETELNCVEINPEDQAIVELSINSVVGLTNPKTMK 1331
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
++G +K V ILID +TH F++ + ++ P TT+ + V + G + G C +
Sbjct: 1332 VRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGI 1391
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYD 452
+ +G++ +F L + G D VL +WL SLG D+ LTM F G+ V++ G
Sbjct: 1392 ELELEGWKVEANFLPLELGGVDGVLEMQWLYSLGVTEVDWKNLTMTFLHNGKKVKIKGDP 1451
Query: 453 SLPPALANHGEINQLLLQEKQGIFFQIMAITT 484
SL A+ + + QG + A+ T
Sbjct: 1452 SLTKAMVGLKNMIKSWRDSDQGFLIECRAMET 1483
>gi|6466937|gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 174/413 (42%), Gaps = 53/413 (12%)
Query: 80 LDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW 139
+D+ G N +FR EQ LE + L A+ L G +V W+ + TW
Sbjct: 231 VDYPAYEGGNADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWWRCSKDREQIYTW 290
Query: 140 AQFKRALVTQFGTFEDGDAVG---------------------TQNLPE---SFFISCFLS 175
+F+ + +F AV T +LP S FL+
Sbjct: 291 REFQEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPHVTSDILESAFLN 350
Query: 176 GLREDIKIGVQMLKPASLLQTFELARF---QEEYAAVSNRRIPPRPSMSRPSPPLLNSSP 232
GLR ++ V +P +L E+A+ QE A R R N++P
Sbjct: 351 GLRRSLRDQVVRCRPVNLADIVEIAKLIESQERNAVSYQVRNQAR----------TNTAP 400
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQT-ERRAKGLCFNCDEQFKPGHRCKAPQL 291
+ S+ P P R + A + E R C C +++ GH+CK PQ
Sbjct: 401 FNNQVSTGSRVVDRAPTRQPFIPSRDTTRASGSGEARNSNPCRYCGDRWFQGHKCK-PQK 459
Query: 292 LLLDADIEDKDEQAEALEELPETLE--------------VSLKALTGATPQNTMRLKGNL 337
L A E+ +E++ +EEL E L ++L +L + + +M+++G +
Sbjct: 460 LKGLAITEEVEEESPLIEELNEPLTEEEGDPEPAEGFKVMTLSSLNDESQEQSMKMRGYI 519
Query: 338 KKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQ 397
V +L+DS +T F++ +L ++ G VT T F V V G +I SSGKC +P+ Q
Sbjct: 520 GNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKCVDIPLEVQ 579
Query: 398 GFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
G +F D++L + D+VLG WL LG ++ L + + V L G
Sbjct: 580 GIEFVQDYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLYG 632
>gi|147769575|emb|CAN76938.1| hypothetical protein VITISV_025425 [Vitis vinifera]
Length = 446
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 137/267 (51%), Gaps = 49/267 (18%)
Query: 56 QINNQQPEPAGRIGGALVQPRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSL 114
+ N + P + GA++ PR +LDF +G E+PTS I R EQ+ + E + + L
Sbjct: 134 RFNYRGPRDSTESYGAVI-PRVTKLDFPRFNGSEDPTSWICRVEQFFEFQKIAEEEKVPL 192
Query: 115 AIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFG--TFED--GD-----AVGTQNLP 165
A HL+G+A WY L++ G + W K L +++G F+D GD VG+
Sbjct: 193 ATYHLEGEAQLWYQILKEE-GEVAWLTLKEGLNSRYGPTEFDDFFGDLTRLKQVGSVREY 251
Query: 166 ESFF---------------ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE-EYAAV 209
+S F ++CF+ GL ED++I VQ +KP +L LAR E +Y
Sbjct: 252 QSQFEKLLSRVGKLNQSQQVACFIGGLNEDVRIDVQAMKPPTLSAAVGLARLYEVKYHKR 311
Query: 210 SNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRA 269
S+ + P+ ++S ++ T+T SS P++ RRLS E ERR
Sbjct: 312 SSFNLEPKKTVS--------TNSTVTSRPLSSTPAI-----------RRLSPTEMKERRD 352
Query: 270 KGLCFNCDEQFKPGHRCKAPQLLLLDA 296
KGLCFNCDE+F PGHRCK +L L++
Sbjct: 353 KGLCFNCDEKFAPGHRCK--KLFLIEG 377
>gi|208609065|dbj|BAG72154.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 131/569 (23%), Positives = 231/569 (40%), Gaps = 92/569 (16%)
Query: 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQED-----RNNNQPL 55
+T +E RV+ L E EV +Q +L+ L LS + R + + R++ +
Sbjct: 3 LTRGAMESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHN 62
Query: 56 QINNQQPEPAGRIG---GALVQPRHI------------------RLDFLVLSGENPTSLI 94
++ + R G G+ R R+D + +G + +
Sbjct: 63 SVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWV 122
Query: 95 FRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF---- 150
+ E++ RL+ + E + + + + ++ A+ W+ W E+ W FK+AL +F
Sbjct: 123 TKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPAL 182
Query: 151 ---------GTFEDGD-----------AVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
+ G A +N FL+GL+E+IK +++
Sbjct: 183 LQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPA 242
Query: 191 ASLLQTFELA--------------------RFQEEYAAVSNRRIPPR-PSMSRPSPPLLN 229
L + + A R +E V R S R + +N
Sbjct: 243 DDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSKGRIANSYVN 302
Query: 230 ------------SSPTITKTGGSSQPSLLGP-PPPGLPPFRRLSVAEQTERRAKGLCFNC 276
++ GG+ G P +RL+ E ER KGLCF C
Sbjct: 303 FQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
Query: 277 DEQFKPGHRC--KAPQLLLLDADIEDKDEQAEALEELPE------TLEVSLKALTGATPQ 328
+++ H C K QL+L++ + ++++E+ E E L++SL + T
Sbjct: 363 GDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKERLTSN 422
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+ ++KG + V ILID +T F++ L + PV T+++ V V +G +SG
Sbjct: 423 RSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGV 482
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
C ++ + QG FF+L + G ++VLG +WL SLG I +F +L +Q+ +GQ + L
Sbjct: 483 CKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVL 542
Query: 449 TGYDSLPPALANHGEINQLLLQEKQGIFF 477
G S+ AN I QE +G +
Sbjct: 543 QGEPSVCRVTANWKSIKITEQQEAEGYYL 571
>gi|9294238|dbj|BAB02140.1| unnamed protein product [Arabidopsis thaliana]
Length = 904
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 20/300 (6%)
Query: 163 NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSR 222
NL E + +S +L+GLR D ++ V+M +P ++ Q F LAR E+ +P +
Sbjct: 68 NLSEEYLVSVYLAGLRVDTQMLVRMFQPQTVRQCFRLARLYEKAQF-------KKPYSAH 120
Query: 223 PSP----PLLNSSPTI---TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLC-F 274
+P LN+ P ++ G + ++ PP ++LS E +E F
Sbjct: 121 WTPKTGGATLNTKPMREPESQAGHYTNKTVSKQPPNT----KKLSQQEMSESELWDFAIF 176
Query: 275 NCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETL-EVSLKALTGATPQNTMRL 333
QL +D D E +D E L E E + ++ + A++G + TMR+
Sbjct: 177 VMKSTLWSTIWFTRTQLFCMDVDDEFEDASEELLNEDEENMPQIFVNAVSGISDYTTMRV 236
Query: 334 KGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVP 393
KG + ILIDS ST F++S++AK+ GC V T +V+VADG + GK +
Sbjct: 237 KGMYDNKILFILIDSGSTFNFIDSTMAKKLGCKVEPTGLTRVSVADGRKLRVDGKITDFT 296
Query: 394 VNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
Q F D ++P+ D+VLG +WL +LG I W+F K M+F +K Q + L G S
Sbjct: 297 WKLQTTSFASDILMIPLQVIDMVLGVQWLATLGRISWEFQKFEMRFKYKNQKILLHGLQS 356
>gi|147837833|emb|CAN62821.1| hypothetical protein VITISV_013041 [Vitis vinifera]
Length = 1357
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 195/418 (46%), Gaps = 48/418 (11%)
Query: 8 ERVEQLSHQFNEKVEVLSQQSNDLQELI--LSLHDQFI---RFQEDRNNNQPLQINNQQP 62
ER ++L H+ +E+ + S DL+ LI L+L +Q + R +E R NQ
Sbjct: 22 ERKQELWHRESEEKAIKS--FADLKSLIGGLNLQNQEVMTNRGEERRWENQ--------- 70
Query: 63 EPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD 122
+G + ++DF +G + R E + ++ + LA HL+G
Sbjct: 71 -----LGHS------TKVDFPKFNGGGLDGWLLRVEYFLKVDRTPPEARVRLAALHLEGK 119
Query: 123 AVPWY-----HWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGL 177
A+ W+ H + + ++ + +L + F++ ++ ES +S FLSGL
Sbjct: 120 AIQWHSGFGQHVFDDPIADLRNLRQTGSLQSYMDEFDE--LYPRADIKESHALSFFLSGL 177
Query: 178 REDIKIGVQMLKPASLLQTFE-LARFQEEYAAVSNR--RIPPRPSMSRPSPPLLNSS-PT 233
+++++ + A+L + +++ Y+ +N + P S+S+ + L N++ P
Sbjct: 178 IDELQMPITRKAVAALQNKPKPVSKGPSLYSPTTNHYHKATPITSISQNATNLSNTTFPK 237
Query: 234 ITKTGGSSQPSLLGPPP--PGLPP--FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
T G P P PG+ R S + ERRAKGLCF CDE+F PGH+CK
Sbjct: 238 TTNAGLLPLPPSTNIPKTNPGITTRNHRNFSNRDLDERRAKGLCFWCDEKFTPGHKCKRK 297
Query: 290 QLLLLDADIEDKDE------QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVT 343
QL ++ +E E Q E L E E +++SL AL TM L GN K +
Sbjct: 298 QLYVMQIQVETDGEGPEGNLQMEGLGEEDEQIQLSLNALMSNEDSQTMTLNGNYKGRSLF 357
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
+LIDS S+H FL+S +AK+ C +VTVA+G + + CS QG +F
Sbjct: 358 VLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGHELHCTALCSDFRWRMQGQEF 415
>gi|115457202|ref|NP_001052201.1| Os04g0191000 [Oryza sativa Japonica Group]
gi|38346036|emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa Japonica Group]
gi|113563772|dbj|BAF14115.1| Os04g0191000 [Oryza sativa Japonica Group]
Length = 1463
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 177/411 (43%), Gaps = 34/411 (8%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR + DF G +P + + E Y R + + + +A HLD WY L +
Sbjct: 55 PRPKKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLED 114
Query: 134 MGNMTWAQFKRALVTQFG-------TFEDGDAVGTQN-----------------LPESFF 169
G TW +FK + +FG FE + T L ES
Sbjct: 115 EGTPTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQR 174
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELAR----FQEEYAAVSNRRIPPRPSMSRPSP 225
+ F GL + V++ P +L LAR + + A R PPR + P+P
Sbjct: 175 VQLFTGGLLPPLSHAVRIHHPETLAAAMSLARQVELMERDRPAPPPLRAPPRGLLPAPAP 234
Query: 226 PLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHR 285
L +P + + P RRL+ E ER +GLCFNC+E+F GH
Sbjct: 235 RLALPAPAQQLALPAPPAAAPQGRDAANP--RRLTPEEMAERCRQGLCFNCNEKFTRGHN 292
Query: 286 CKAPQLLLLDA-DIEDKDEQAEALEELPETLE--VSLKALTGATPQNTMRLKGNLKKHGV 342
+L +D +I+D + +A +T SL A+ G +T++L+ + +
Sbjct: 293 RFCRRLFFVDGVEIDDVAIEGDAAAAAGDTEAPVFSLHAVAGVPIADTIQLQVTVGDASL 352
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
L+D STH F+ A++ G P+ ++ + VA+G ++ G G FH
Sbjct: 353 LALLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANGERVACPGVIRDAAFTINGSTFH 412
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
D F++P++G D+VLG WL +LG I+WDF+ +M F GQ G S
Sbjct: 413 TDLFVMPLAGFDVVLGTRWLGTLGPIVWDFTSRSMAFQRDGQRFAWKGVAS 463
>gi|147786921|emb|CAN64438.1| hypothetical protein VITISV_011230 [Vitis vinifera]
Length = 361
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 234 ITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLL 293
+T T S P L P P +RLS E +RRA+GLCFNCD++ GHRCK PQLLL
Sbjct: 198 LTATTTYSHPLAL-PTTTKASPVKRLSWEEMQKRRAQGLCFNCDDKSTSGHRCKGPQLLL 256
Query: 294 LDADIEDKDE--QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSST 351
L+ +I D E EA +LP E+SL ALTG T TMR+ + H + +LIDS ST
Sbjct: 257 LEGNINDDSEGDTKEAEADLPSDPEISLHALTGWTATKTMRVTAKIGTHDIVVLIDSGST 316
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPV 394
H F++ +A PV T F V VA+G + G+ ++ +
Sbjct: 317 HNFISDKVAALLHLPVVPTAPFHVRVANGQPLKCQGRFDNIHI 359
>gi|77555174|gb|ABA97970.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1548
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 173/412 (41%), Gaps = 63/412 (15%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
++DF G + + CE Y + E +S A ++ GDA WY + G
Sbjct: 150 KMDFPRFDGTDVRVWLDNCETYFGFYQITEGFQVSAASLNMIGDAANWYQAWKLETGWHN 209
Query: 139 WAQFKRA------------------LVTQFGTFEDGDAVGTQN----------LPESFFI 170
W K A L+TQ G+ + + Q L ++F I
Sbjct: 210 WESLKTAVLNEFEVNLESVKMDELLLLTQTGSVTEYRSKFNQLVYQLRLYDPLLSDTFLI 269
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
FL GL+++++ VQ +P S+ Q + L E A +
Sbjct: 270 RHFLLGLKDELRSAVQAQQPTSVSQAY-LVALAHESAQLG-------------------- 308
Query: 231 SPTITKTGGSSQP--SLLGPPPPGLPPFRRLSVAEQTE-RRAKGLCFNCDEQFKPGHRC- 286
T TK G + ++ G L P + E RRA+GLCF C E++ PGH C
Sbjct: 309 --TGTKKGHYKKEHVAIRGTDKLKLAPGELWKAQQLKEYRRAQGLCFKCGEKYAPGHVCA 366
Query: 287 --KAPQLLLLDADIEDK---DEQAEALEEL---PETLEVSLKALTGATPQNTMRLKGNLK 338
+ QL L E + DE +A+ L +++ +SL A+ G P +T++L+ ++
Sbjct: 367 KQEGVQLKALHVQEESEVLSDEVLDAITALDVSSDSISLSLHAMAGTCPSHTVQLRALVQ 426
Query: 339 KHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQG 398
+ IL+DS STH F+++ L + + V VA+G + K QG
Sbjct: 427 NQVIIILVDSGSTHSFIDAGLCHRLQLSTESIQPTSVRVANGETLCCEAKVPQFAWWVQG 486
Query: 399 FQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+F +LP+ G D+VLG +WL + D++ +QF++ G + L G
Sbjct: 487 HEFSFPMRVLPMGGYDLVLGMDWLTQFSPMTCDWAAKQLQFSYNGSVITLKG 538
>gi|224132328|ref|XP_002321312.1| predicted protein [Populus trichocarpa]
gi|222862085|gb|EEE99627.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 163/347 (46%), Gaps = 68/347 (19%)
Query: 118 HLDGDAVPWYH-WLEQTMGNMTWAQFKRALVTQFGT----FEDGDAVGTQNLPESFF-IS 171
+L+G A W+ ++ ++ W +F A+ T+FG E+ + + + E + S
Sbjct: 105 YLEGKAEIWFEGYMCGVEYSIDWEEFLGAICTKFGNKANIVEEFNKLTQEGGIEKYIESS 164
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
F+SGL+EDIK +++LKP +L+ TF+ +++QEE +V R+ +SRP+ + +
Sbjct: 165 SFISGLKEDIKPMLKILKPVTLMTTFDQSKWQEESNSVLARK---NKFVSRPTTAVQSGR 221
Query: 232 PTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQL 291
PT G++C L
Sbjct: 222 PT-------------------------------------------------GYKCGVKGL 232
Query: 292 LLLDADIEDK--DEQAE-ALEELPETLEV-----SLKALTGATPQNTMRLKGNLKKHGVT 343
++D + E+ D +AE +E+L + ++ SL AL NT+R++GN +
Sbjct: 233 HMIDGNKEEDFLDVEAENIIEKLMKNKKIKEYSLSLNALADNYAHNTIRIRGNYHGRELV 292
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHL 403
ILIDS STH F++ +A + + + VT+A+G I + Q ++F +
Sbjct: 293 ILIDSGSTHNFIDEHIAGELQISIERSLVLTVTIANGSTILCDSYTTEFKWFMQNYEFVV 352
Query: 404 DFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
D +L + CD+VLG +WL S +L+DF K+ + F +G+ ++L G
Sbjct: 353 DLKILKLGRCDVVLGMDWLNS--QLLFDFIKIKISFRKEGRMIELRG 397
>gi|449462405|ref|XP_004148931.1| PREDICTED: uncharacterized protein LOC101213941 [Cucumis sativus]
Length = 902
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/517 (22%), Positives = 203/517 (39%), Gaps = 119/517 (23%)
Query: 16 QFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRIGGALVQ- 74
Q ++V+ ++ L+E++L + R ED N + ++ E +G G++++
Sbjct: 5 QIEDRVDGTEKEIMGLKEMLLEMKKAMERMAEDLRENH----SYKRREESGTSDGSVMKL 60
Query: 75 --------------------PRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSL 114
++ +L+ + GENP S ++R E + + L ET+ + +
Sbjct: 61 KGKAEETDVHNEGNLTMGDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKV 120
Query: 115 AIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDG--DAVGTQ---------- 162
A+ D V WY W +W K + F F+D ++G +
Sbjct: 121 AVVSFGQDEVDWYRWSHNRKKVESWEDLKERM---FDFFKDTGQQSLGARLIRIQQEGSY 177
Query: 163 ---------------NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYA 207
++ ES + FL+GL ++ V P +L A+
Sbjct: 178 SEYVKKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEDCMREAQL----- 232
Query: 208 AVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPS---------------LLGPPPPG 252
V++R + + +M + +K G ++ + L
Sbjct: 233 -VNDRNVALKLAMEELDIVEPKRNENSSKFQGKNEKTESKKTEFVMKQVTIPLKNDYQKK 291
Query: 253 LPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ----LLLLDADIEDKDEQAEAL 308
PP +RLS E R KGLCF C+E++ PGHRCK + +LL+ + ED + +A
Sbjct: 292 DPPIKRLSDTEFRARLDKGLCFKCNEKYSPGHRCKGREKRELMLLILNEEEDHKREEDAE 351
Query: 309 EELPETLE-----------VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
+E E +E + L+ +TG T + T +LKG+L
Sbjct: 352 DEASEVIELNHLELNMDNPIELRLITGVTSKRTKKLKGHL-------------------- 391
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
+ T+F VT+ +G SG C V V + DF + + D+VL
Sbjct: 392 --------SIDLGTRFGVTIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVL 443
Query: 418 GAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
G +WL S G + + LTM F KG+ + L G SL
Sbjct: 444 GMQWLDSTGTMKVHWPSLTMTFWTKGRRIILKGDPSL 480
>gi|116309424|emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]
Length = 1602
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 182/409 (44%), Gaps = 45/409 (11%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
+G+NP CEQY + + + +A + G+A W + MG ++W
Sbjct: 135 FNGDNPQMWKANCEQYFDVYGTHPVNWVKIATLNFVGNAAFWLQSVRSQMGGISWNGLCD 194
Query: 145 ALVTQFGT----------------------FEDGDAVGTQ------NLPESFFISCFLSG 176
A+ T+F E D + Q +L +F++ F+ G
Sbjct: 195 AVCTRFAKDKHQALIRQWIHIVQTGTVSEYVEKFDGLMHQMIAYDPSLIPVYFVTKFIEG 254
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPR--PSMSRPSPPLLN--SSP 232
L++++++ V + +P L +A QEE P R P S +++ S P
Sbjct: 255 LKDEVRVVVLVQRPQDLDTACAIALLQEEAMEGVKSASPKRSEPIFGIKSNRMMSNYSVP 314
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC-KAPQL 291
T TKT + G + A ++ RRAKGLCF C E++ +C A QL
Sbjct: 315 TSTKTTNVTAEDRRGTEAARARDEKL--AALKSYRRAKGLCFTCGEKWGKERKCASAIQL 372
Query: 292 LLLDADIE--------DKDEQAEALEELPE--TLEVSLKALTGATPQNTMRLKGNLKKHG 341
+++ +E + D ++E E+ L +S +A+ G T++L+G ++
Sbjct: 373 HVVEELLETLTLGYESESDPKSEDTEDSQHGTLLSISQQAVWGTESSRTIKLRGWIQDME 432
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
+ +L+DS STH F++S ++ + T V +ADGG + + + S QG QF
Sbjct: 433 LLMLVDSGSTHSFIDSEVSLRLPGVHKLQTPLTVRIADGGTMKCTHEISSCNWWMQGNQF 492
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
F +LP+ DI+LG +WL + D++ M+F ++G+ V+L G
Sbjct: 493 CNSFRVLPLGNYDIILGMDWLELFSPMQVDWANKWMEFLYQGKLVRLQG 541
>gi|38346427|emb|CAD40214.2| OSJNBa0019J05.12 [Oryza sativa Japonica Group]
Length = 1817
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 199/453 (43%), Gaps = 66/453 (14%)
Query: 87 GENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQF---- 142
G+NP CEQY + + + + +A + G+A W + +G +TW
Sbjct: 310 GDNPQMWKVNCEQYFDVFGIQQIHWVKIATLNFCGNAAFWLQSVRNQLGGITWVGLCDLV 369
Query: 143 --------KRALVTQ-FGTFEDG---------DAVGTQ------NLPESFFISCFLSGLR 178
++AL+ Q F +DG D++ Q +L +F++ F+ GLR
Sbjct: 370 CSRFSKDRQQALIRQWFHIRQDGSVAEYVEKFDSLMHQLLAYDNSLLPVYFVTKFVEGLR 429
Query: 179 EDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTG 238
DI++ V + +P + +A QEE +P S P+ NS G
Sbjct: 430 SDIRVVVLVQRPQDMDSACAVALLQEEALEGVQSTQYKKPDTS---IPIRNS-----HKG 481
Query: 239 GSSQPSLLGPPPPGLPP---FRRLS----------VAEQTERRAKGLCFNCDEQFKPGHR 285
PS L PP L P RR + A + RR+KGLCF C E++ H+
Sbjct: 482 AGVLPSTL-PPKQLLSPQSEDRRGTESARARDDKLSALKAYRRSKGLCFTCGERWSRDHK 540
Query: 286 CKAPQLL-----LLDA-----DIEDKD-EQAEALEELPETLEVSLKALTGATPQNTMRLK 334
C L LLDA +E D EQ E+ + + +S +A+ G N+ RL+
Sbjct: 541 CSTAVQLHVVQELLDALQDVKTVEVSDGEQFLHCEDTSDLMAISQQAIWGTESPNSFRLR 600
Query: 335 GNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPV 394
G ++ + +L+DS STH F+ S+ + ++ V +ADG +S S + ++
Sbjct: 601 GWVQGTELLMLVDSGSTHSFMEESIGLKLAGVKPLRSKLSVKLADGETLSCSYEVTNCRW 660
Query: 395 NSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
QG F +F LL + G DI+LG +WL + ++ M T GQ V+L G S
Sbjct: 661 WMQGHNFINNFRLLNLGGYDIILGMDWLEQFSPMQVNWVDKWMDITISGQPVRLQGIVS- 719
Query: 455 PPALANHGEIN--QLLLQEKQGIFFQIMAITTS 485
+++ I+ Q L +QG ++ +T+S
Sbjct: 720 --QVSHCSPISTEQCLGMVRQGSLMYLVQLTSS 750
>gi|18855070|gb|AAL79762.1|AC096687_26 putative polyprotein [Oryza sativa Japonica Group]
gi|108711868|gb|ABF99663.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1087
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 181/418 (43%), Gaps = 69/418 (16%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
++DF SG + + CE + + + +S A+ ++ GDA WY + G
Sbjct: 144 KMDFPKFSGSDVRVWLDNCETFFLFYQIADGYKVSAAVLNMSGDAANWYQEWKFEQGWHD 203
Query: 139 WAQFKRALV------------------TQFGTFEDGDAVGTQN----------LPESFFI 170
W K AL+ TQ G D + Q L +F I
Sbjct: 204 WPMLKAALLGEFEVHLKYVKMDELLLLTQTGFVSDYRSKFNQLVYQIRLYDPLLSPNFLI 263
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
FL GL++++++ VQ +P S+ Q F +A E + PS S
Sbjct: 264 RQFLLGLKDELRVPVQAQQPTSVTQAFLVALAYES---------------ALPSSGSKKS 308
Query: 231 SPTIT-KTGGSSQPSLLGPPPPGLPPFRRLSVAEQTE--RRAKGLCFNCDEQFKPGHRC- 286
+ G + L P L A+Q + RRA+GLCF C +++ PGH C
Sbjct: 309 VSKKNFQVGRGGEKQKLAP--------GELWKAQQLKEYRRAQGLCFKCGDKYIPGHVCS 360
Query: 287 --KAPQLLLLDADIED---KDEQAEA---LEELPETLEVSLKALTGATPQNTMRLKGNLK 338
+ PQL ++ E DE +A LE ++ +SL AL G + N ++L+
Sbjct: 361 KQETPQLKAMELQEEAIVLTDELLDAVTGLELSEDSANLSLHALAGTSHTNIVQLRALSS 420
Query: 339 KHGVTILIDSSSTHIFLNSSLAKQYGC---PVTTTTQFQVTVADGGVISSSGKCSHVPVN 395
+ +L+DS S+H F+NS+L + P+ T+ V VA+G V+ K S
Sbjct: 421 NQVLIVLVDSGSSHSFINSALCHRLHLLSEPIPPTS---VRVANGEVLVCDAKISQFDWW 477
Query: 396 SQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
QG QF +LP+ G D+VLG +WL + D++ +QF+++G ++L G S
Sbjct: 478 VQGHQFSFPVRVLPMGGYDLVLGMDWLTQYSPMTCDWAAKWLQFSYQGSLIKLQGIQS 535
>gi|170660047|gb|ACB28472.1| polyprotein [Ananas comosus]
Length = 953
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 76/122 (62%)
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
TMRL G +K + ILIDS STH FL++++A + GC VTVADG + SS
Sbjct: 10 RTMRLCGTVKNRRIHILIDSGSTHNFLDAAVAAKLGCCAENIPAVNVTVADGNKLISSST 69
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
C QG +F + LLP+ GCD+VLG +WL+ LG ILWDFSKL M+F ++GQ + L
Sbjct: 70 CRAFKWKMQGLEFKANLLLLPLRGCDMVLGVQWLKQLGPILWDFSKLRMEFQFQGQKIVL 129
Query: 449 TG 450
G
Sbjct: 130 RG 131
>gi|108864565|gb|ABA94541.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1347
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 120/444 (27%), Positives = 190/444 (42%), Gaps = 53/444 (11%)
Query: 75 PRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTM 134
PR + +F G+NP + E+Y + + S A H G+A W E+
Sbjct: 129 PRLPKTEFPKFDGDNPKLWKKKSEKYFDMYQVPYATWASFATLHFVGNAALWLQTYEELH 188
Query: 135 GNMTWAQ--------FKRALVTQF----------GTFEDGDA----------VGTQNLPE 166
+W++ F R QF GT E+ + V + E
Sbjct: 189 AVESWSELCVAVNGKFGRDRYQQFLEKLDNLKQEGTIEEYYSRFEELMHKVLVYNRGYDE 248
Query: 167 SFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPP 226
+FF++ FL GL+ +IK +++ +P ++ LA+ QEE N + + ++
Sbjct: 249 TFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKESFKN 308
Query: 227 LLNSSPTITKTGGSSQPSLLGPPPPGL------PPFRRLSVAEQTERRAKGLCFNCDEQF 280
P++ K +LGPPP + P + + RRA+G CF C E+F
Sbjct: 309 NFKV-PSLAK-------GILGPPPDEIKKTEERPKWEEQYDSLNAARRARGECFKCGEKF 360
Query: 281 KPGHRC-KAPQLLLLDADIED---KDEQAEALEELP-ETLEVSLKALTGATPQNTMRLKG 335
PGH+C KA QL +LD +E DE + E E L +S AL G + T+ L+G
Sbjct: 361 GPGHKCPKAVQLHVLDELLEVFQFSDEPGQVEESSSDEELLLSENALFGTEGKRTIWLQG 420
Query: 336 NLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVN 395
+++ V ILIDS S+ F+ S L + + V + DGG + V
Sbjct: 421 LIQQ--VLILIDSGSSSSFMASHLVDRLHLVPNSIPSALVMIIDGGKLFCDEMAEQVEWW 478
Query: 396 SQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLP 455
QG F +F +L + G D++LG +WL + + + + T KG QL S+
Sbjct: 479 CQGNTFSSNFKILGLGGYDLILGMDWLEAHSPMWIHWGRKTGMHK-KGVISQLIQLCSIQ 537
Query: 456 PALANHGEIN---QLLLQEKQGIF 476
AN I + +LQ QG+F
Sbjct: 538 EIAANQEAIPREIEAVLQHYQGLF 561
>gi|242070717|ref|XP_002450635.1| hypothetical protein SORBIDRAFT_05g008466 [Sorghum bicolor]
gi|241936478|gb|EES09623.1| hypothetical protein SORBIDRAFT_05g008466 [Sorghum bicolor]
Length = 1507
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA-DIEDKDEQAEALEELPETL 315
RRLS E ERR GLCFNC+E++ GH ++ L+ +I++ + A E E
Sbjct: 342 RRLSPEEMAERRRLGLCFNCNEKYTRGHNRFCRRIFFLEGVEIDNAPDDVAAAEPDAEAP 401
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
SL+A+ G TM+ + +L + L+DS STH F++++ A++ G P+ +
Sbjct: 402 CFSLQAVAGVPVAGTMQPRVSLGAAILVALLDSGSTHNFISAAAARRSGLPLRQRPRLTA 461
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
VA+G ++ G P+ G F D F++P++G D+VLG WL +LG I+WD S
Sbjct: 462 LVANGERVTCDGVIRDAPLLIDGVTFPADLFVMPLAGYDVVLGTRWLGALGPIVWDLSSR 521
Query: 436 TMQFTWKGQTVQLTGYDSLP--PALANHGEINQL---LLQEKQGIF 476
M F G+ V TG + P P+L+ E L LL G+F
Sbjct: 522 RMTFQHLGRPVSWTGI-ACPTVPSLSVTSEAGPLLDALLHAYGGLF 566
>gi|449456255|ref|XP_004145865.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 818
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/515 (21%), Positives = 201/515 (39%), Gaps = 110/515 (21%)
Query: 16 QFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQ-------------QP 62
Q E+V+ ++ L+E++L + R ++ N + + +
Sbjct: 8 QIEERVDGTEKEIMGLKEMMLEMKKLMDRMADELRENHSYKRREEAGTTDDIRLKLKGKL 67
Query: 63 EPAGRI----GGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGH 118
E AG GG+ + ++ +L+ + +G NP S +R E + + L E + + +A+
Sbjct: 68 EEAGTTVESGGGSADRSKYKKLEMPLFTGVNPESWAYRAEHFFGINDLPEAEKVKVAVVS 127
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRAL------------------VTQFGTFED----- 155
+ V W+ W + +W K + + Q G++ +
Sbjct: 128 FGQEEVDWFRWSNRRKRVESWEDLKERMFDFFNDTGQQSLGARLICIKQKGSYSEYVKKF 187
Query: 156 -GDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI 214
+ ++ ES + FL+GL ++ V P +L + + A+ V++R I
Sbjct: 188 VTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEAQL------VNDRNI 241
Query: 215 PPRPSMSRPSPPLLNSSPTITKTGGS-----SQPSLLGPPPPGLP--------------- 254
+P+M L + K G S+ + +P
Sbjct: 242 ALKPAMEELDIVELKRNENSNKFQGKNEKAESKKTEFVMKQVTIPLKNDYQKNDYQKKDT 301
Query: 255 PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ----LLLLDADIEDKDEQAEALEE 310
P +RLS E R KGLCF C+E++ PGHRCK + +LL+ + ED + + +E
Sbjct: 302 PIKRLSDTEFRARLDKGLCFRCNEKYAPGHRCKGREKRELMLLILNEEEDHKREEDTEDE 361
Query: 311 LPETLE-----------VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
E +E + L+ +TG T + TM+LKG+L
Sbjct: 362 ASEVIELNHLELNMDNPIELRLITGVTSKGTMKLKGHL---------------------- 399
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ T+F VT+ + SG C V V + DF + + D+VLG
Sbjct: 400 ------SIDPGTRFGVTIGNDNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGM 453
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
+WL + G + + LTM F K + + L G SL
Sbjct: 454 QWLDTTGTMKVHWPSLTMTFWAKDKQIVLRGDPSL 488
>gi|147772855|emb|CAN73669.1| hypothetical protein VITISV_003711 [Vitis vinifera]
Length = 1308
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 133/288 (46%), Gaps = 63/288 (21%)
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLL 228
+ F+ L+ ++ G++M KP S+ + LA+ +++ A R +RPS L
Sbjct: 126 LVGTFMGDLKPEVADGIRMFKPQSVKEAISLAKMRDDQLARQRR-------FARPSA-LR 177
Query: 229 NSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKA 288
S P P +G G+ R +S
Sbjct: 178 ASIPE------DETPEEMG----GVNTTREIS---------------------------- 199
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
+IE+ D E E++L ALTG TM++K + H V LIDS
Sbjct: 200 --------EIEEDDNGKEP--------EITLHALTGWIVPRTMQIKAIIGAHDVVALIDS 243
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
STH F++ + + V TT F V VA+G +S GK + VN QG +FHLDFF +
Sbjct: 244 GSTHNFISDRVVETLRLLVKPTTPFTVRVANGERLSCKGKYEKLTVNLQGNEFHLDFFSV 303
Query: 409 PVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPP 456
P++G D+VLG +WL +LG+++ D+ K TM F W+ Q +L G + +PP
Sbjct: 304 PLNGLDMVLGIQWLETLGSVVCDWKKRTMDFIWEQQPKKLQGIE-IPP 350
>gi|31432119|gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1611
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/425 (24%), Positives = 179/425 (42%), Gaps = 78/425 (18%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
RL+ + +GE+P + +CE++ + ++LA+ HL G A W+ + +T
Sbjct: 231 RLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPWQVIT 290
Query: 139 WAQFKRALVTQFGTFEDGDAVGT-QN----------------------------LPESFF 169
W Q+ + T+F T +AV QN L E +F
Sbjct: 291 WPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRRDHPYLQEPYF 350
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
SCF+SGLR DIK V KP LL+++ A+ E+ A ++R+ + +R
Sbjct: 351 TSCFISGLRGDIKHDVCGQKPQGLLESYWYAKNYEK--AANSRKAAANFNRNR------- 401
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
+TGG++ ++ P ++ +++ + C+ C E + P H+CK
Sbjct: 402 -----LQTGGNTGKNVYNKGQP----------RQEGDKKEEKKCWFCKEPWFPRHQCKVK 446
Query: 290 QLL--LL---------------------DADIEDKDEQAEALEELPETLEVSLKALTGAT 326
Q + LL + E EQ E ++E E + +S A+ G T
Sbjct: 447 QAIHALLVENEESVEVEEDSVEEEEIKGEKQGEKLPEQTENVQE--ELMSISQSAVYGLT 504
Query: 327 PQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
+T + + L+DS ST F++S A + C + T +V VA GG + S
Sbjct: 505 RPDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQCTLENTKMRKVIVAGGGELKSE 564
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+ QG F F LL + DI+LGA+W+ I D K M+ T G+ +
Sbjct: 565 LIVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFKYSPITLDLRKREMKITKGGREL 624
Query: 447 QLTGY 451
++ +
Sbjct: 625 EIQDF 629
>gi|38345562|emb|CAE03436.2| OSJNBa0032F06.19 [Oryza sativa Japonica Group]
Length = 1575
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 193/468 (41%), Gaps = 53/468 (11%)
Query: 63 EPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD 122
E +G G R +LDF +P + RCE Y + + +A + G
Sbjct: 190 EESGGSEGRGYNHRLPKLDFPQFDDSDPQNWRLRCEHYFGVYGTHPDLWVRVATIYFIGR 249
Query: 123 AVPWYHWLEQTMGNMTWAQFKRALVTQFGT----------------------FEDGDAVG 160
A W + +W F + +F +E D +
Sbjct: 250 AASWLRSSRAHLLCGSWGVFCDTVDRKFDRNRHLQLVRQIDQLKQSGSVNEYYERFDDLW 309
Query: 161 TQNL---PESFFISC---FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAV----- 209
+Q L P +SC F GLR DIK V M P L LA QEE
Sbjct: 310 SQLLVYDPTLSTVSCVHRFTEGLRSDIKNAVLMHFPQDLETALALAILQEELGEAGGSLV 369
Query: 210 --SNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTER 267
+++ + + + PL P G P + VA + R
Sbjct: 370 SKDGKKLGDHAARIKGAYPLPLPPPKFVHAGKGDDKR--AAEVPKVASSSDKLVALKAYR 427
Query: 268 RAKGLCFNCDEQFKPGHRCKAPQLL--------LLDADIEDKDEQAEALEELPETLEVSL 319
RA+GLC+ C E++ P H+C P L +L AD+ D ++ A++ L + +SL
Sbjct: 428 RAQGLCYVCAEKWSPTHKCSGPVQLHAVQELFSVLAADVSDGEQDADSTSSL---MAISL 484
Query: 320 KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
+A+ G +T+RL+G+++ V IL+DS S+ FL+S + + T QV VA+
Sbjct: 485 QAIQGTVSAHTLRLQGSIQGFDVLILVDSGSSCSFLSSVVLPHLTGVKSLLTPIQVKVAN 544
Query: 380 GGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
G V+ + + QG QF +F LLP+ D++LG +WL + ++ T+QF
Sbjct: 545 GTVLYCTSELPAAKWEVQGHQFSTNFKLLPLDNYDMILGMDWLEKYSPMDINWQAKTIQF 604
Query: 440 TWKGQTVQLTGYDSLPPAL--ANHGEINQLLLQEKQGIFFQIMAITTS 485
++V+L G + P L + I+QL L QG ++ +T S
Sbjct: 605 CLHDKSVELKG---VVPELDKCDLVSIHQLQLLHNQGAVESLVQLTAS 649
>gi|38345213|emb|CAD40196.2| OSJNBb0043H09.2 [Oryza sativa Japonica Group]
Length = 1409
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 113/448 (25%), Positives = 195/448 (43%), Gaps = 74/448 (16%)
Query: 80 LDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW 139
+ F +G+NP CE Y + + + + +A + G+A W + + TW
Sbjct: 148 MTFPQFNGDNPQMWKANCEIYFDVYGIHPRNWVKVATLNFCGNAAFWLQSVRSQLAGATW 207
Query: 140 --------AQFKR----------ALVTQFGTFEDG----DAVGTQNLPES------FFIS 171
A+F R ++Q T D D++ Q L +F++
Sbjct: 208 FELCERVCARFSRDRQQTLIRQWIRISQSSTISDYVERFDSIMHQLLAYRGANEPIYFVT 267
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEE----YAAVSNRR------IPPRPSMS 221
F+ GL+++I++ V ML+P L LA QEE RR + RP+
Sbjct: 268 KFVDGLKDNIRLAVMMLRPQDLDTACSLALLQEEALEGVVQSGVRRQDSGVYVKSRPT-- 325
Query: 222 RPSPPLLNSSPTITKTGGSS----QPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCD 277
P+P L + + K G S + LL A ++ RR+KGLCF
Sbjct: 326 -PTPVLPTRTTSEDKVGAKSVRTREDKLL---------------ALKSYRRSKGLCFKSG 369
Query: 278 EQFKPGHRCKAPQLL-----LLDADIEDKDEQAEALEELPET-----LEVSLKALTGATP 327
E++ H+C A L LL+A ++ E+ + ++PET + +S ++L G
Sbjct: 370 ERWGKDHKCAASIQLHVVEELLNA-LQFNTEEEKFSGDIPETADDALMSISYQSLNGIDS 428
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
++RL+G ++ + +L+DS STH F++ + + +V +ADGG +S S
Sbjct: 429 STSIRLRGWVQGTELLMLVDSGSTHSFVDERIGSTFIGLKHLPQPLKVQIADGGQLSCSQ 488
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
QG F DF LLP+ D +LG +WL+ + +++ ++F+ G+ V+
Sbjct: 489 VIPKCDWWIQGHNFSSDFRLLPLGSYDAILGMDWLQQFSPMQIEWNHKWLEFSHLGKVVK 548
Query: 448 LTGYDSLPPALANHGEINQLLLQEKQGI 475
L G + P + I+ LQE G+
Sbjct: 549 LQG---ITPQTSQCATISGEQLQEPTGL 573
>gi|10140673|gb|AAG13508.1|AC068924_13 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1608
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 175/416 (42%), Gaps = 60/416 (14%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQF-- 142
+G+NP CE Y + + + + +A + G+A W + + TW +
Sbjct: 153 FNGDNPQLWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGATWFELCD 212
Query: 143 ----------KRALVTQFGTFEDGDAV-----------------GTQNLPESFFISCFLS 175
K+AL+ Q+ +V G N P ++F++ F+
Sbjct: 213 RVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDP-AYFVTKFVD 271
Query: 176 GLREDIKIGVQMLKPASLLQTFELARFQEE----YAAVSNRR------IPPRPSMSRPSP 225
GL++ I++ V + +P L +A QEE +VSN++ + +PS + SP
Sbjct: 272 GLKDHIRVVVMVQRPQDLDSACTVALLQEEALEGVQSVSNKKNETTTFLKTKPSHNLTSP 331
Query: 226 PLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHR 285
S T + R + RR+KGLCF C E++ H+
Sbjct: 332 TFQARSIPFTNIEDKRGVEFSKGRDDKVSALR-------SYRRSKGLCFVCGEKWGRDHK 384
Query: 286 CKAPQLL-----LLDADIEDKDEQAEALEELPETLE-----VSLKALTGATPQNTMRLKG 335
C L L++A D +E + E PE+ E +S +AL G ++RL+G
Sbjct: 385 CATTVQLHVVEELINALKTDPEENCNS-EGAPESEEDSLMAISFQALNGTDSSKSIRLRG 443
Query: 336 NLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ-FQVTVADGGVISSSGKCSHVPV 394
++ + +L+DS STH F+++ L Q C + Q +V VADG + +
Sbjct: 444 WVQNTELLMLVDSGSTHSFIDAKLGAQL-CGLQKLNQAIKVQVADGSQLFCDSFLPNCSW 502
Query: 395 NSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
SQG F DF LLP+ D +LG +WL + D+ + F GQ VQL G
Sbjct: 503 WSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWVHKWIAFQHHGQAVQLQG 558
>gi|18425247|gb|AAL69425.1|AC098565_7 Putative polyprotein [Oryza sativa]
gi|31430198|gb|AAP52144.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 848
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 157/343 (45%), Gaps = 40/343 (11%)
Query: 121 GDAVPWYHWLEQTMGNMTWAQFKRA-----LVT--QFGTFED------GDAVGTQNLPES 167
GD +PW + E + +R L T + GT +D A L E+
Sbjct: 132 GDPLPWLNRCETFFRGQKTPESRRVCPLGELTTLWRTGTVDDYINSFLALACRDAKLSEN 191
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAV-SNRRIPPRPSMS-RPSP 225
+ F +GL +K V + +P+SL T LAR E+ + + +P R + RPS
Sbjct: 192 QQVQLFTAGLVNPLKTDVALCRPSSLDDTIMLARAYEQRVQLGTTDPVPARSGRTPRPSL 251
Query: 226 PLLNSSPTITKTGGSSQPSLLGPPPPGLP-----PFRRLSVAEQTERRAKGLCFNCDEQF 280
P L + + ++ + P P +RLS AE +RR++GLC+NCDE+
Sbjct: 252 PALPAPVSAASAASTAPDAASSASTSKQPLVSALPRKRLSPAEMAQRRSEGLCYNCDEKS 311
Query: 281 KPGHRC--KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA-TPQ-NTMRLKGN 336
R + P A L+E +SL AL G TP NT++++
Sbjct: 312 SASQRKLRRTPT------------AHALTLDEP----SISLHALAGVRTPTFNTIKVQAR 355
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNS 396
+ + L+DS STH F++ A++ P+ V VA+G I+S G V
Sbjct: 356 IGATDLVALLDSGSTHNFISDVAARRARVPLEPRHGLSVAVANGDRITSPGCFPSQRVTI 415
Query: 397 QGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
F +DF+ LP+ G D+VLGA+WL SLG LWDF+K ++ F
Sbjct: 416 GDHTFVIDFYALPLGGYDVVLGAQWLGSLGPTLWDFAKQSLAF 458
>gi|57834110|emb|CAE04775.3| OSJNBa0079C19.16 [Oryza sativa Japonica Group]
Length = 1002
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 113/448 (25%), Positives = 195/448 (43%), Gaps = 74/448 (16%)
Query: 80 LDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW 139
+ F +G+NP CE Y + + + + +A + G+A W + + TW
Sbjct: 463 MTFPQFNGDNPQMWKANCEIYFDVYGIHPRNWVKVATLNFCGNAAFWLQSVRSQLAGATW 522
Query: 140 --------AQFKR----------ALVTQFGTFEDG----DAVGTQNLPES------FFIS 171
A+F R ++Q T D D++ Q L +F++
Sbjct: 523 FELCERVCARFSRDRQQTLIRQWIRISQSSTISDYVERFDSIMHQLLAYRGANEPIYFVT 582
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEE----YAAVSNRR------IPPRPSMS 221
F+ GL+++I++ V ML+P L LA QEE RR + RP+
Sbjct: 583 KFVDGLKDNIRLAVMMLRPQDLDTACSLALLQEEALEGVVQSGVRRQDSGVYVKSRPT-- 640
Query: 222 RPSPPLLNSSPTITKTGGSS----QPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCD 277
P+P L + + K G S + LL A ++ RR+KGLCF
Sbjct: 641 -PTPVLPTRTTSEDKVGAKSVRTREDKLL---------------ALKSYRRSKGLCFKSG 684
Query: 278 EQFKPGHRCKAPQLL-----LLDADIEDKDEQAEALEELPET-----LEVSLKALTGATP 327
E++ H+C A L LL+A ++ E+ + ++PET + +S ++L G
Sbjct: 685 ERWGKDHKCAASIQLHVVEELLNA-LQFNTEEEKFSGDIPETADDALMSISYQSLNGIDS 743
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
++RL+G ++ + +L+DS STH F++ + + +V +ADGG +S S
Sbjct: 744 STSIRLRGWVQGTELLMLVDSGSTHSFVDERIGSTFIGLKHLPQPLKVQIADGGQLSCSQ 803
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
QG F DF LLP+ D +LG +WL+ + +++ ++F+ G+ V+
Sbjct: 804 VIPKCDWWIQGHNFSSDFRLLPLGSYDAILGMDWLQQFSPMQIEWNHKWLEFSHLGKVVK 863
Query: 448 LTGYDSLPPALANHGEINQLLLQEKQGI 475
L G + P + I+ LQE G+
Sbjct: 864 LQG---ITPQTSQCATISGEQLQEPTGL 888
>gi|110289660|gb|AAP55181.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1459
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 106/442 (23%), Positives = 188/442 (42%), Gaps = 75/442 (16%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQF-- 142
+G+NP CEQY + +L + +A + G+A W+ + M ++W
Sbjct: 361 FTGDNPQMWKSNCEQYFDVYGILPVHWVKIATLNFSGNAAFWFQSVRNQMSGISWVSLCD 420
Query: 143 ----------KRALVTQFGTFEDGDAVG----------------TQNLPESFFISCFLSG 176
++AL+ Q+ + +V +L +F++ F+ G
Sbjct: 421 LVCSRFFKDRQQALIRQWFHIKQEGSVSEYVEKFDSLMHQLLAYYNSLLPVYFVTKFIEG 480
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEE---------YAAVSN----RRIPPRPSMSRP 223
LR DI++ V + +P L T +A QEE Y +N R P P + +
Sbjct: 481 LRSDIRMVVLVQRPQDLDSTCSVALLQEEAMEGVKFQGYKRPNNSVMIRNNSPAPIVGQA 540
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
S P SP IT+ ++ + RLS A ++ RR+KGLCF C E+++
Sbjct: 541 STPQKIFSPQITEDRRGTEAARARDD--------RLS-ALKSYRRSKGLCFTCGEKWE-- 589
Query: 284 HRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVT 343
+ ++E+ + + +S +A+ G ++RL G ++ +
Sbjct: 590 ----------------------QEIDEVGDLMSISQQAVWGTESSRSIRLIGWVQGTELL 627
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHL 403
+LIDS STH F++ ++ + V +ADGG + S + ++ QG F
Sbjct: 628 MLIDSGSTHSFMDETVGSKMVGVSPLRKPLSVQLADGGSLLCSHEIANCKWWMQGHSFSS 687
Query: 404 DFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGE 463
+F LL + G DI+LG +WL + D+S+ M+ Q V+L G S + N
Sbjct: 688 NFRLLNLGGYDIILGMDWLEQFSPMQVDWSQKWMEIQVNNQPVRLQGITSQTNS-CNAIS 746
Query: 464 INQLLLQEKQGIFFQIMAITTS 485
Q L ++G ++ +T+S
Sbjct: 747 AEQCLGMARKGSILYLVQLTSS 768
>gi|253761750|ref|XP_002489250.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
gi|241947110|gb|EES20255.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
Length = 1445
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 177/418 (42%), Gaps = 60/418 (14%)
Query: 74 QPRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQ 132
Q + +L+F G +P + + +C+Q+ R+ ++ LA HL G A Y+ LEQ
Sbjct: 531 QVKFYKLEFPTYDGTVDPLNWLNQCDQFFRVQRTPASNRTWLASYHLRGGAQTLYYALEQ 590
Query: 133 TMGNMTWAQFKRALVTQFGTFEDGD----------AVGTQNLPESF-FISC--------- 172
G W +F+ +FG G A Q + F ++C
Sbjct: 591 DEGMPPWERFRDLCRLRFGPPLHGSRLAELGRLPFATSVQEFADRFQALACHAPDVSTRQ 650
Query: 173 ----FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLL 228
F+ GL E I++ V+M P L Y A + P P PP
Sbjct: 651 RAELFVGGLPEYIRVDVEMHHPQDLQAAI--------YYAPTGGCDP----SGAPCPPDQ 698
Query: 229 NSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKA 288
S + Q L P + A+Q ERR +GLC+NCDE + GH C+
Sbjct: 699 RSGRAFQQHVRQEQGRLPFP---QQQVQAPQAGAQQQERRRQGLCYNCDELYTSGHVCQ- 754
Query: 289 PQLLLLDADIEDKDEQA----------------EALEELPETLEVSLKALTGATPQNTMR 332
+LL L AD D E+A EE+ L VSL A G NTM
Sbjct: 755 -RLLYLAAD--DYIEEAVQPQGDVAAPALQEAAAPEEEVANVLAVSLHAFAGIRTTNTML 811
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
L +K V L+D+ STH FL+ ++ ++ G Q +VTVA+G + +G +V
Sbjct: 812 LPVLIKGECVLALLDTGSTHNFLSGAIMERLGLVPDGGDQLRVTVANGDKLRCAGIARNV 871
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
P++ +G F + + + D +LG ++LR+LG I WD TM F G +Q G
Sbjct: 872 PISIEGETFAITCADIDLGCFDFILGYDFLRTLGPITWDLEAKTMAFWRGGCGIQWKG 929
>gi|32489310|emb|CAE03706.1| OSJNBa0060B20.14 [Oryza sativa Japonica Group]
Length = 3200
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 103/432 (23%), Positives = 182/432 (42%), Gaps = 79/432 (18%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
G+NP CE Y L + + + +A + G+A W + + +TW +
Sbjct: 1549 FDGDNPIMWKVNCESYFDLYGIHPINWVKVATLNFTGNAAFWLQAVRSQLEGVTWEELCD 1608
Query: 145 ALVTQF------------------GTFEDG----DAVGTQNLPES------FFISCFLSG 176
+ T+F GT D D++ Q + +F++ F+ G
Sbjct: 1609 RVCTRFNKDRQQALIRQWFKICQTGTVADYVEKFDSIMHQLMAYDPTFKPVYFVTKFVEG 1668
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEY------------AAVSNRRIPPRPSMSRPS 224
L+ +I+ + + +P L LA QEE + + R ++ P+
Sbjct: 1669 LKHEIRSAILLQRPGDLDAACTLAFLQEEALEGDKGIDIKKGEGSGSAKHSVRVALPLPT 1728
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTE-------------RRAKG 271
PP T GGS P RR+S +++ RR+KG
Sbjct: 1729 PP--------TVKGGS----------PSFAEERRISDNGRSQNREMDRLATLKAYRRSKG 1770
Query: 272 LCFNCDEQFKPGHRCKAP------QLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
LCF C E++ H+C + Q LL D + ++ + +S++A+ G
Sbjct: 1771 LCFTCGEKWGREHKCASSIQLHVVQELLAVLQGPDISSEEFIVQSDDSLMAISIQAINGT 1830
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+++RL+G L+ V +L+DS STH F++ L + + + +V VADGG ++
Sbjct: 1831 ESNHSIRLRGWLQGIEVLMLVDSGSTHSFVDHQLGLKLTGVKSMASPARVKVADGGHLNC 1890
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQT 445
S ++ +QG F +F LL + D++LG +WL + D+ + ++F ++G T
Sbjct: 1891 SLYVNNCDWLTQGIHFKSNFRLLSLGTYDVILGMDWLEQFSPMKVDWVQKWLEFQFQGST 1950
Query: 446 VQLTGYDSLPPA 457
V+L DSL P
Sbjct: 1951 VRLQ--DSLLPG 1960
>gi|77551679|gb|ABA94476.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 940
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 180/432 (41%), Gaps = 68/432 (15%)
Query: 63 EPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD 122
E + R G + R+D G NP + +C+ Y R++ + +A G
Sbjct: 118 ECSSRGHGNWFHGGNARVDCPQFDGGNPKAWKMKCKTYFRVSGTSPEVWVGVAALQFSGG 177
Query: 123 AVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNL------------------ 164
A+ W + M+W +F A+ +FG E V N
Sbjct: 178 ALVWLQTTNAHIEMMSWEEFVDAVCAKFGREEFQGVVRQFNKLRQTGSVTSYAKRFNDLM 237
Query: 165 -----------PESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR 213
PE FF++ FL GL+ +I+ V + +P+ + +L+ Q+E A + RR
Sbjct: 238 HQLHVHHPSWNPE-FFVTQFLEGLKPEIRAAVLLHRPSDMDTAVDLSCLQDEVAKIV-RR 295
Query: 214 IPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLC 273
P R P + G + LP R++ A + R+AKGL
Sbjct: 296 EPRRVEF-----------PANNRVSGEDR---------NLPMEDRVA-ALRAYRKAKGLY 334
Query: 274 FNCDEQFKPGHRCKAPQLL-----LLDADIEDKDE----------QAEALEELPETLEVS 318
C E++ H+C L LLD +E+ DE ++E E E ++S
Sbjct: 335 HTCGERWSHEHKCGPTVQLHVVEELLDL-LENFDENQTATVSDEIESEETEVNGEVCQIS 393
Query: 319 LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVA 378
+A+ T+RL+G ++ H + +L+DS STH F++++L + G +V +A
Sbjct: 394 KEAMLETETSGTLRLQGLMQHHQIMLLVDSGSTHSFVSAALDDKLGGKQRAVPAIKVRIA 453
Query: 379 DGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
DGG++ + + QG F +LP+ D++LG +WL + D+ T+Q
Sbjct: 454 DGGILHCNKEIVDCLWLVQGESFLTSLKVLPLGNYDVILGMDWLEQHSPMKVDWRAKTLQ 513
Query: 439 FTWKGQTVQLTG 450
F + + + L G
Sbjct: 514 FHYNQKEICLKG 525
>gi|28209489|gb|AAO37507.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1155
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/432 (25%), Positives = 185/432 (42%), Gaps = 55/432 (12%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
++DF G + + CE Y + + + +S A+ H+ G+A WYH + +
Sbjct: 121 KMDFPRFDGSDVRIWLDMCETYFDMYQITQNFKVSAAVLHMSGNAAQWYHSYKLVNEVNS 180
Query: 139 WAQFKRALVTQF------------------GTFEDG----DAVGTQ------NLPESFFI 170
W QF+ A+ T+F GT + D++ Q ++ +
Sbjct: 181 WDQFRMAVATEFECVVEREKMSALDTLTQTGTMTEYKQQFDSLVYQIRVFDPSMGGKMLV 240
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
+ F++GL E+I+ V + P ++ Q +A QE A SR + L
Sbjct: 241 THFMNGLTEEIRAAVVIQLPDTVQQASAIALMQESVLA------------SRATKALKGK 288
Query: 231 SPTI--TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC-- 286
+ K+ SS +L L ++L + RRA+GLCF C +++ P HRC
Sbjct: 289 FVKLPQYKSDVSSDTTLGRVDKGDLWKAKQL----KDYRRAQGLCFKCGDKYTPEHRCAV 344
Query: 287 ----KAPQLL-LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHG 341
KA +L +L DI D AE ++ E +SL A TGA + L+ +
Sbjct: 345 GGQIKAMKLEEVLTDDILDAVIAAEQSDD-EEDCHISLNAFTGAHLPTAIHLRALVHSKV 403
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
+ +L+DS S+H F++ + A G P+ V VA+G + QG F
Sbjct: 404 LLLLVDSGSSHSFIDYNFAHMLGLPLKPIPSTLVKVANGDCLPCQYVVPSFSWWIQGHTF 463
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGY-DSLPPALAN 460
D ++ + G D +LG +WL G + ++ T++F ++G + L G D+ P+
Sbjct: 464 TYDMRVVTLEGHDAILGMDWLEQWGEMSCHWANKTLKFQYQGSWISLQGVQDAAVPSEIA 523
Query: 461 HGEINQLLLQEK 472
+ QLL K
Sbjct: 524 AVTLPQLLKWHK 535
>gi|242033109|ref|XP_002463949.1| hypothetical protein SORBIDRAFT_01g009436 [Sorghum bicolor]
gi|241917803|gb|EER90947.1| hypothetical protein SORBIDRAFT_01g009436 [Sorghum bicolor]
Length = 1450
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 4/198 (2%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA-DIEDKDEQAEALEELPETL 315
RRL+ E ERR +GLCFNC+E+F GH +L LD +I+D
Sbjct: 332 RRLTPEEMAERRRQGLCFNCNEKFSRGHNRFCKRLFFLDGVEIDDAPADETEAAADAVAQ 391
Query: 316 E---VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
E SL + G + TMR++ + + L+D+ STH F+ + A + G P+ + +
Sbjct: 392 EAPIFSLHVVAGVSVGRTMRVRVRVGSTPLIALLDTGSTHNFIAETAAARSGLPIQSQPR 451
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDF 432
VA+G + G + P+ F +D F++P++G D+VLG +W+ +LG ++WDF
Sbjct: 452 LTAMVANGEKVPCPGVIKNAPLAIHDSVFAVDLFVMPLAGHDLVLGTQWMATLGRLVWDF 511
Query: 433 SKLTMQFTWKGQTVQLTG 450
++ F +G TV G
Sbjct: 512 VDGSVSFQHQGSTVCWPG 529
>gi|255583783|ref|XP_002532644.1| conserved hypothetical protein [Ricinus communis]
gi|223527635|gb|EEF29747.1| conserved hypothetical protein [Ricinus communis]
Length = 462
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 164/367 (44%), Gaps = 64/367 (17%)
Query: 75 PRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTM 134
PR ++L V GENP IFR E+Y + + D L A L+GDA+ W+ W E
Sbjct: 105 PRKLKLP--VFEGENPDGWIFRAERYFDINNIPVVDRLKAASVCLEGDALAWFQWEEGRR 162
Query: 135 GNMTWAQFKRALVTQFGTFEDGD------------------------AVGTQNLPESFFI 170
+W FK +L+ F + ++G A + L E
Sbjct: 163 PFRSWVDFKESLIVCFRSTQEGTLHDQLLALKQTTTVKEFRRQFEIIAAPLKGLAEDVLE 222
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELA-RFQEEYAAVS--NRRIPPRPSMSRPSP-- 225
+ F++GLR D++ ++ P L + ++A + +E+ A+ N+ R + S PS
Sbjct: 223 AAFVNGLRPDMQAELRQWSPFGLDKKMQVAQKIEEKLKALGQYNQTTQNRWANSTPSGTH 282
Query: 226 -----PLLNSSPTIT-----KTGGSSQPSLLGPPPPGL----------PPFRRLSVAEQT 265
++++P+I K+ SS S + P + PPF+++S E
Sbjct: 283 FTNKVTQVSTTPSIKPNHFPKSFTSSSNSTVAKPSGSVSTSTGSNNTRPPFKQMSHGEME 342
Query: 266 ERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
R KGL + CD ++ PGHRC L +L + + + E + ++ ++ E+
Sbjct: 343 ACRLKGLYYRCDGRYDPGHRCPNKSLKIL--CVINGSSEEEEMTKVEQSKEIP------- 393
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
T ++G +K + +LIDS ++ F++ +L ++ G T F+V + +G I S
Sbjct: 394 ----TEEVRGKIKSRDIIMLIDSGASRNFISEALLEKIGLTRLPTKSFKVQMGNGDEIDS 449
Query: 386 SGKCSHV 392
+G C V
Sbjct: 450 TGVCKSV 456
>gi|53981172|gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1475
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 173/420 (41%), Gaps = 80/420 (19%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWY----------- 127
RL+ + SGE+P + +CE++ + ++LA+ HL+G A+ W+
Sbjct: 97 RLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQVIA 156
Query: 128 --HWLEQTMGNMTWAQFKRAL-----VTQFGT--------FEDGDAVGTQNLP---ESFF 169
W + A A+ V QFGT FED + ++ P E +
Sbjct: 157 WPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKRDHPYLQEQYL 216
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
SCF+ GLR DIK V KP LL+T Y A + R++ + +R PL
Sbjct: 217 TSCFIGGLRADIKYDVCGQKPQGLLET---------YWAANARKMVGNFNRNRNQNPL-- 265
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
GG+ G R + +RR + C+ C E + P H+CK
Sbjct: 266 --------GGNQ----------GRNANHRGQNRGEGDRREEKKCWFCKEPWFPRHQCKIK 307
Query: 290 QLL--LLDADIEDKDEQ-----------------AEALEELP--ETLEVSLKALTGATPQ 328
Q + LL+ D +D++ A + E P E + +S A+ G +
Sbjct: 308 QAIHALLEEDDGQEDKETSNTGGDEEEKKETEESATSENESPTEELMYISQTAVQGTSRP 367
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+T + + L+DS ST F++ A + P+ T +V VA GG + +
Sbjct: 368 DTFSVLIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVM 427
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
+ QG F F LLP+ G DI+LGA+W+ + I D + + T KG V L
Sbjct: 428 VPDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISLDLKQRILGIT-KGNKVIL 486
>gi|297604112|ref|NP_001055003.2| Os05g0241900 [Oryza sativa Japonica Group]
gi|255676164|dbj|BAF16917.2| Os05g0241900 [Oryza sativa Japonica Group]
Length = 578
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 174/420 (41%), Gaps = 80/420 (19%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
RL+ + SGE+P + +CE++ + ++LA+ HL+G A+ W+ + +
Sbjct: 97 RLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQVIA 156
Query: 139 WAQFKRALVT------------------QFGT--------FEDGDAVGTQNLP---ESFF 169
W Q+ + T QFGT FED + ++ P E +
Sbjct: 157 WPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKRDHPYLQEQYL 216
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
SCF+ GLR DIK V KP LL+T Y A + R++ + +R PL
Sbjct: 217 TSCFIGGLRADIKYDVCGQKPQGLLET---------YWAANARKMVGNFNRNRNQNPL-- 265
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
GG+ G R + +RR + C+ C E + P H+CK
Sbjct: 266 --------GGNQ----------GRNANHRGQNRGEGDRREEKKCWFCKEPWFPRHQCKIK 307
Query: 290 QLL--LLDADIEDKDEQ-----------------AEALEELP--ETLEVSLKALTGATPQ 328
Q + LL+ D +D++ A + E P E + +S A+ G +
Sbjct: 308 QAIHALLEEDDGQEDKETSNTGGDEEEKKETEESATSENESPTEELMYISQTAVQGTSRP 367
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+T + + L+DS ST F++ A + P+ T +V VA GG + +
Sbjct: 368 DTFSVLIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVM 427
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
+ QG F F LLP+ G DI+LGA+W+ + I D + + T KG V L
Sbjct: 428 VPDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISLDLKQRILGIT-KGNKVIL 486
>gi|440577416|emb|CCI55439.1| PH01B031C15.22 [Phyllostachys edulis]
Length = 267
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 104/198 (52%), Gaps = 10/198 (5%)
Query: 266 ERRAKGLCFNCDEQFKPGHR--CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALT 323
ERR++GLC+N +E+F PGH+ CK + +E E E ++ T +SL ALT
Sbjct: 3 ERRSQGLCYNYNEKFHPGHQKLCKH----IFSLQVEPDSEDEEEEPKVAAT--ISLLALT 56
Query: 324 GATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI 383
G TM+L + + L+DS STH F+ + L + G +T T V VA+G +
Sbjct: 57 GIRKTQTMQLAVIINGVHLLALVDSGSTHNFVAAELVARVGLSLTPRTGLSVAVANGDHV 116
Query: 384 SSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKG 443
+S G C ++ F LDF +P+ G D+VLG +WL SLG I WDF M+F +G
Sbjct: 117 TSGGICRATLISIDKEDFILDFLTIPLDGFDVVLGVQWLGSLGPITWDFHHRMMRFQRQG 176
Query: 444 QTVQLTGYDSLPPALANH 461
+ + G + PP H
Sbjct: 177 REIVWHGAN--PPGAGPH 192
>gi|10122034|gb|AAG13423.1|AC051634_4 putative plant disease resistance polyprotein [Oryza sativa
Japonica Group]
Length = 894
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 106/425 (24%), Positives = 175/425 (41%), Gaps = 57/425 (13%)
Query: 66 GRIGGALVQPRHI---RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD 122
GR G + RH ++DF G + + CE Y + + + +S + H+ G+
Sbjct: 105 GRGFGDGIYRRHQPLPKMDFPRFDGSDVRIWLNMCETYFDMYQITQNFKVSAVVLHMSGN 164
Query: 123 AVPWYHWLEQTMGNMTWAQFKRALVTQF-GTFEDGDAVGTQNLPES-------------- 167
A WYH + +W QF+ A+ T+F G E L ++
Sbjct: 165 AAQWYHSYKLVNEVNSWDQFRMAVATEFEGVVEREKMSALDTLTQTGTVTEYKQQFDYLV 224
Query: 168 -------------FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI 214
++ F++GL E+I+ V + P ++ Q+ +A QE A +
Sbjct: 225 YQIRVFDPSVGGKMLVTRFMNGLTEEIRAAVVVQLPDTVQQSSAIALMQESVLASRATKA 284
Query: 215 PPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTE--RRAKGL 272
+ P SS T PG L A+Q + RRA+GL
Sbjct: 285 LKGKFVKLPQYKSDVSSDTT----------------PGQVDKGDLWKAKQLKDYRRAQGL 328
Query: 273 CFNCDEQFKPGHRC------KAPQLL-LLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
CF C +++ P HRC KA QL +L DI D AE ++ E +SL ALTGA
Sbjct: 329 CFKCGDKYTPEHRCAVGGQIKAMQLEEVLTDDILDAVIAAEQSDD-EEDCHISLNALTGA 387
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ L+ + + +L+D S+H F++ + A+ G P+ V VA+G +
Sbjct: 388 HLPTAILLRALVHSKVLLLLVDYGSSHSFIDYNFAQMLGLPLKPIPSTLVKVANGDCLPC 447
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQT 445
QG F D ++ + D +LG +WL G + ++ T++F ++G
Sbjct: 448 QYVVPGFSWWIQGHTFTYDMRVVTLGVHDAILGMDWLEQWGEMSCHWANKTLKFQYQGSW 507
Query: 446 VQLTG 450
+ L G
Sbjct: 508 ISLQG 512
>gi|62733754|gb|AAX95863.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1126
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 112/435 (25%), Positives = 182/435 (41%), Gaps = 54/435 (12%)
Query: 36 LSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIF 95
L+ D+ + + R N P+ + + + PR + DF G NP L
Sbjct: 162 LAAQDRSLVKGKSRFPNSPITFDIGESSVQNQSSNRFQGPRLPKSDFPKFDGNNP-KLWK 220
Query: 96 RCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFED 155
++Y + + + A H G+A W E TW + A+ ++FG +
Sbjct: 221 NSKKYFEMYQVSYENWAKFATLHFVGNAALWLQTYEALHSVETWPELCIAVHSKFGKDK- 279
Query: 156 GDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELA----------RFQEE 205
++L E L GLR+ + K L+ EL ++E
Sbjct: 280 ----YQEHLEE-------LEGLRQIASVEEYYTKFEELMHREELVLELKKGTQKLGYKES 328
Query: 206 Y--AAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAE 263
Y AAV N + +L +P G ++ P F L +
Sbjct: 329 YKLAAVKN---------NYQGKGILGHAPD---DAGKTEEK-----PKWEDRFESLKAS- 370
Query: 264 QTERRAKGLCFNCDEQFKPGHRC-KAPQLLLLDA-----DIEDKDEQAEALEE--LPETL 315
RRAKG CF C E++ P H+C K+ QL +L+ I++ E + E E L
Sbjct: 371 ---RRAKGECFKCGEKWGPNHKCPKSVQLHVLEELLEVLQIQENQEAGQDCESEGSDEEL 427
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
VS A++G + T+RL+G ++ V ILIDS S+ F+ L V T QV
Sbjct: 428 VVSECAVSGTMGKRTVRLQGLIQNQEVLILIDSGSSSSFVAQHLVDSLSLAVLETAPAQV 487
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
+ADGGV+ + + V QG F D +L + G D++LG +WL + ++ +
Sbjct: 488 VIADGGVLQCNKVATKVDWWCQGHSFTSDLKVLQLGGYDVILGMDWLEHFSPMWINWQRK 547
Query: 436 TMQFTWKGQTVQLTG 450
++FT++G+ + LTG
Sbjct: 548 KLRFTYQGKRITLTG 562
>gi|449479937|ref|XP_004155752.1| PREDICTED: uncharacterized protein LOC101232675 [Cucumis sativus]
Length = 436
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 17/196 (8%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEE------ 310
+RLS E R KGLCF+C+E++ GHRCK + L + E+ + +EE
Sbjct: 79 KRLSDTEFRARLDKGLCFSCNEKYSLGHRCKMREKRELILNEEESGGEEVKMEETEEVIE 138
Query: 311 -----LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
+ ET E+ LK LTG T + TM+LKG++K V ILIDS +T+ F++ ++A + G
Sbjct: 139 LNQLVVAETTEIELKTLTGLTSKGTMKLKGHVKGREVVILIDSGATNNFIHEAVAMEGGL 198
Query: 366 PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSL 425
+ TQF VTV DG G C V + DF ++ + D+VLG +WL +
Sbjct: 199 SIELGTQFGVTVGDGTRCKGKGICRKVEPRLKEMTVITDFLVVELGNIDVVLGMQWLDTT 258
Query: 426 GAILWDFSKLTMQFTW 441
G + T++ TW
Sbjct: 259 GTM------KTLEKTW 268
>gi|108862706|gb|ABA98602.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2202
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/438 (25%), Positives = 185/438 (42%), Gaps = 72/438 (16%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P + RCE Y + + +A + G A W + +
Sbjct: 459 KLDFPQFDGVDPQNWRMRCEHYFGVYGTHPILWVRVATIYFTGRAASWLRSSKAHLRFSE 518
Query: 139 WAQFKRAL------------------VTQFGT----FEDGDAVGTQNLP------ESFFI 170
W+ F A+ + Q GT +E D V Q L + +
Sbjct: 519 WSNFCLAVDRKFDRDRHQMLIRQIEQIKQTGTVEEFYERFDDVTNQLLAFDPMYNQLTIV 578
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYA---------AVSNRRIPPRPSMS 221
F GLR DI+ V M +P L +A QEE+ + + + + +
Sbjct: 579 HRFTEGLRFDIRHAVMMQRPRDLETALAIACLQEEWTETQKPKEFRKLGDHVLRIKGAYP 638
Query: 222 RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAE-----QTERRAKGLCFNC 276
P PP S + SS+P + ++A+ + RRA+GLC+ C
Sbjct: 639 LPLPPSKVSESSAGAGKSSSEP------------VKTTAIADRMRALKAHRRAQGLCYLC 686
Query: 277 DEQFKPGHRCKAP-QL--------LLLDADIEDKDEQAEALEELPETL-EVSLKALTGAT 326
E++ H+C + QL LL D + D E E P +L +S+ A+ G T
Sbjct: 687 AEKWSLSHKCSSSVQLNAVQEVFALLQQNDSDSGDSSGEDTE--PHSLFSLSVHAIQGTT 744
Query: 327 P----QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV 382
+ TMRL+G ++ + + IL+DS S+ F++ S+ Q + FQV VA+G +
Sbjct: 745 TAQTMRQTMRLQGIIQGYDILILVDSGSSCSFISLSVMPQLSNLIQLPVSFQVKVANGQM 804
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
+S + ++V + QG F +LP+ D++LG +WL + D+ + T++FT
Sbjct: 805 LSCETELANVSWSVQGHHFCSALKVLPLQSYDMILGMDWLERYSPMDIDWQQKTIRFTLD 864
Query: 443 GQTVQLTGYDSLPPALAN 460
GQ + L G +P AN
Sbjct: 865 GQLITLCGV--VPSVSAN 880
>gi|218199564|gb|EEC81991.1| hypothetical protein OsI_25921 [Oryza sativa Indica Group]
Length = 426
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 23/223 (10%)
Query: 267 RRAKGLCFNCDEQFKPGHRC-KAPQLLLLDADIE---------DKDEQAEALEELPETLE 316
RRA+G CF C E++ PGH+C K+ QL +L+ +E +E+ E + E L
Sbjct: 159 RRARGECFKCGEKYGPGHKCPKSVQLHVLEELLEVFLAQEGNSHNEEETEGTSD--EELV 216
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
+S A+ G T + T+RL+G L+ + +L+DS S FL+ L + P T+ QVT
Sbjct: 217 LSECAMLGTTGKRTIRLQGLLQNQEILVLVDSGSFSNFLSEQLVSKLQLPTQTSAPSQVT 276
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
+ADGG I + +++ QG F D +L + D++LG EWL + D+ +
Sbjct: 277 IADGGKILCNQVVANLEWWCQGHTFSTDLKVLSLGSYDMILGMEWLEDFSPMWIDWKRKK 336
Query: 437 MQFTWKGQTVQLTGY----DSLPP-------ALANHGEINQLL 468
M FT+ G + L G D P LA G I QL+
Sbjct: 337 MTFTYAGNRITLVGVKEQLDQCKPVTAKQLKGLAKSGAIAQLV 379
>gi|297608672|ref|NP_001061948.2| Os08g0451600 [Oryza sativa Japonica Group]
gi|215768264|dbj|BAH00493.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255678494|dbj|BAF23862.2| Os08g0451600 [Oryza sativa Japonica Group]
Length = 707
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 25/291 (8%)
Query: 176 GLREDIKIGVQMLKPASLLQTFELARFQE----EYAAVSNRRIPPRPSMSRPSPPLLNSS 231
GL+EDI+ V + P ++ Q +A QE E + ++R+ +P ++ P
Sbjct: 3 GLKEDIRAAVMVQLPTTVQQAAAVALMQESVLLELSTKQSKRLMYKPLPTKGELP----- 57
Query: 232 PTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC----- 286
GG+ P++ P L R+L + RRA GLCF C +++ P H+C
Sbjct: 58 -----QGGTDTPAI-KPERAELWKARQL----RDYRRANGLCFKCGDKYSPEHQCALGGQ 107
Query: 287 -KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTIL 345
KA Q+ + D AE + E +SL +L+GA+ NT+RL+ ++ + +L
Sbjct: 108 IKAMQVTEVIPDDLLNAVTAEEDSDQDENCHISLNSLSGASHVNTIRLRALVQNKVLLLL 167
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
+DS S+H FL+ + A+ G + V VA+G I QG F D
Sbjct: 168 VDSGSSHSFLDYNFAQLLGLQLQPIAPSLVKVANGDCIHCQFMVPQFTWWFQGRTFTYDM 227
Query: 406 FLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPP 456
++P+ G D +LG +WL G + +++ T++F ++G V+L G PP
Sbjct: 228 RVVPLGGHDAILGMDWLAQWGDMSCNWANKTLKFMYQGTWVELQGVPDSPP 278
>gi|307136196|gb|ADN34034.1| gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]
Length = 473
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 153/386 (39%), Gaps = 39/386 (10%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+L+ V +GE+P I++ E Y ++ L E + L +AI ++G + W+ W E +
Sbjct: 98 KLEMPVFNGEDPDGWIYKAEYYFQMHLLNEQEKLKIAIVSMEGKGLCWFRWAENRKRFRS 157
Query: 139 WAQFKRALVTQFGTFEDG------------DAVGTQ------------NLPESFFISCFL 174
W + K + +F E G +VG + E + F
Sbjct: 158 WKELKERMYNRFCNREYGTGCARFLAIKHEGSVGEYLQRFEELSTPLPEMAEDVLVGTFT 217
Query: 175 SGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTI 234
GL I+ V ++ L ++AR EE ++ P ++ P +P
Sbjct: 218 KGLDPVIRTEVFAMRVVGLEDMVDVARLAEEKLEIARASHSP---YAKDGKPAQKHAPKN 274
Query: 235 TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLL 294
++ + +L P L + S + G NC K L
Sbjct: 275 SEIPSTKIVTLAERIPTSL---NQASNPQNGATGMGGRILNCKHDVKRDE--------LE 323
Query: 295 DADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
D ++ D + E +E P +E+SL + G T T ++KG ++ + I++D +TH F
Sbjct: 324 DVEMVDSTHEGEMVEVSP-MVELSLNFVVGLTAPGTFKIKGRVEDREIVIMVDCGATHNF 382
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ L + P+ T + V + + C + V DF L + D
Sbjct: 383 ISLKLVESLNLPMAAITNYGVIMGSEKAVQGREMCKGITVGLPVITIVEDFLPLELGNLD 442
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFT 440
+VLG +WL+ GA+ D+ LTM F
Sbjct: 443 MVLGMQWLQKQGAMTVDWKALTMNFV 468
>gi|50582700|gb|AAT78770.1| putative retrotransposon gag protein [Oryza sativa Japonica Group]
gi|108709720|gb|ABF97515.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 748
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 173/425 (40%), Gaps = 62/425 (14%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R +LDF + G +P +CE Y + + +A + G A W H +
Sbjct: 205 RMPKLDFPIFDGSDPQDWRMKCEHYFDVCDTSPNPWVRIATIYFRGRAASWLHSSRAHVC 264
Query: 136 NMTWAQFKRAL------------------VTQFGT----FEDGDAVGTQNL------PES 167
+ WA+F A+ + Q GT +E D + Q L +
Sbjct: 265 YLGWAEFCGAVACKFDINLHDWVLGQLDTIKQLGTVQEYYEKFDELANQLLVYDLAANDR 324
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVS-------NRRIPPRPSM 220
+F F +GLR++I+ V + +P L F LA QEE A S + P R +
Sbjct: 325 YFTHKFTNGLRKEIRGAVILHRPRDLETAFVLASLQEEEMAKSPTDFKRYDGGAPTRAQV 384
Query: 221 SRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
R P L S P P + R R+A+GLC+ C +++
Sbjct: 385 KRAYPLPLPPPRPSGSIEAKSDGVKAVPSPDKMATLR-------AYRKAQGLCYICAKKW 437
Query: 281 KPGHRC------KAPQLLL---------LDADIEDKDEQAEALEELPETLEVSLKALTGA 325
H+C A Q + + ADI D + A + E + VSL AL G
Sbjct: 438 SHNHKCANSVQLHAVQEVFAHLQDPQDSVSADILDVESPARS-----ELMVVSLLALQGV 492
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
TMR+ G ++ V IL+DS S+ F++S LA + T +V VA GGV+
Sbjct: 493 ESVGTMRILGYVQGFEVLILVDSGSSVSFISSKLATGLSGLHSLPTPLKVQVASGGVLHC 552
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQT 445
+ +QG+ F D +LP++ D++LG +WL + + D+ + + Q+
Sbjct: 553 DSIVTQCEWFTQGYTFRTDLRVLPLTSFDMILGIDWLATHSPMTVDWCNRVLTISAHRQS 612
Query: 446 VQLTG 450
+ L G
Sbjct: 613 ITLCG 617
>gi|449530792|ref|XP_004172376.1| PREDICTED: uncharacterized protein LOC101223371 [Cucumis sativus]
Length = 943
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/468 (20%), Positives = 186/468 (39%), Gaps = 90/468 (19%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+++ + +G++P S +F E+Y ++ L + + +++A +G + WY E+ +
Sbjct: 112 KVEMPIFNGDDPDSWLFCVERYFQIHKLTDFEKMTVATISFEGPVLNWYRSQEERDKFID 171
Query: 139 WAQFKRALVTQFGTFEDGDAVGT------------------------QNLPESFFISCFL 174
WA K ++ +F + +G G +LPE F+
Sbjct: 172 WANLKERVLVRFRSTREGSLYGRFLRIQQTTTVEEYRNLFDKLVAPLSDLPEKVVEETFM 231
Query: 175 SGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTI 234
SGL+ I+ + +P L Q +A ++ R + R + S +
Sbjct: 232 SGLKPWIQTEMDFCEPKGLSQMMRIAH-----------KVENREDIRREANHPGYSGEKL 280
Query: 235 TKTGGSSQPSLLGPPPPG-----------------------LPPFRRLSVAEQTERRAKG 271
+ TG ++ S +G P +RLS AE R+ KG
Sbjct: 281 SNTGSGNKDSTIGNSGDNKGNWNWPMRTVTLRGTSGEEVRKAGPTKRLSDAEFQSRKEKG 340
Query: 272 LCFNCDEQFKPGHRCKAPQ------LLLLDADIEDKD-----------EQAEALEELPET 314
LCF C+E++ H+CK + L+++ + E + E ++E
Sbjct: 341 LCFRCNEKYSHDHKCKTKEQRELHMLVVMGENEEYEIIEEEDIEQKELNAVEVVQEEQTV 400
Query: 315 LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
+E+S+ ++ G + TM++ + + F++ SL ++ +TT +
Sbjct: 401 VELSINSVVGLSNPGTMKI---------------AEPYNFISESLVEELHINTKSTTNYG 445
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
V + G I C + + ++ DF L + G D +LG +WL SLG D+
Sbjct: 446 VILGSGTAIKGKRVCEAIEMVLGKWRVVDDFLPLELGGVDAILGMQWLYSLGITEVDWKN 505
Query: 435 LTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAI 482
L + FT + V + G SL A + + + ++ QG + A+
Sbjct: 506 LILTFTHDEEKVVMRGDPSLTKARVSLKTLMKSWGEDDQGFLVECRAL 553
>gi|108862641|gb|ABG22014.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1422
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/455 (23%), Positives = 187/455 (41%), Gaps = 72/455 (15%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
RL+ + +G++P + +CE++ L +++++ H G A W+ + ++
Sbjct: 139 RLEIPLFNGDDPIDWLKQCEKFFELTGTPMDQWVNMSLAHFQGRAAKWFRGVGLPWQIIS 198
Query: 139 WAQFKRALVTQFGTFEDGDAVGT-QN----------------------------LPESFF 169
W Q+ + T+F +AV QN L E +
Sbjct: 199 WPQWCAMISTRFSAANVHEAVELFQNVKQYGMTVEQYIDKFEEYVDLVRRDHPYLQEQYI 258
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
SCF+ GLR DIK V KP LL+++ A+ E+ A R S S +N
Sbjct: 259 TSCFIGGLRSDIKHDVCGQKPQGLLESYWYAKTYEKAANAK------RNSFS------IN 306
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
+ G+ G G P R ++ + C+ C E + P H+CK
Sbjct: 307 RNRNQNFNMGNQ-----GRNQAGKAPQRNEGEKKEEK-----KCWFCKEPWFPRHQCKVK 356
Query: 290 QLLLL-----------------DADI-EDKDEQAEALEELPET--LEVSLKALTGATPQN 329
Q L + D+ E+ D+ A+ E+ E + VSL AL G + +
Sbjct: 357 QALHALLLEDEEVEENTEEKNGEVDLTEENDDMADTEEKGKEEELMFVSLNALQGTSRPD 416
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
T + + LIDS ST F++ A + CP+ + +V VA GG + S +
Sbjct: 417 TFLVIILINGRKAVGLIDSGSTSTFMDQEFAIKSQCPLKNSEVKKVVVARGGELRSEVQV 476
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
+ QG QF F L+P+ G DI+LGA+W+ AI K ++ T G+ + L
Sbjct: 477 PEIQYVIQGEQFSNPFNLIPLKGYDIILGADWIFQYSAITLYLKKRILEITTGGKKLILQ 536
Query: 450 GYDS-LPPALANHGEINQLLLQEKQGIFFQIMAIT 483
+ ++ ++ +++ + G FQ+ +T
Sbjct: 537 DFTKPGKHVFISNKKMERVVKKGAVGCVFQVCEVT 571
>gi|449466919|ref|XP_004151173.1| PREDICTED: uncharacterized protein LOC101214111 [Cucumis sativus]
Length = 503
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 152/391 (38%), Gaps = 65/391 (16%)
Query: 84 VLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFK 143
+ +G NP S F E LLE + + +A+ V WY W +W K
Sbjct: 3 IFTGVNPESWAFWVEHLFETNNLLEAEKVKVAVVSFGQKEVDWYQWSHYRKKVESWENLK 62
Query: 144 RALVTQFGTFEDG--DAVG------TQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQ 195
+ F F D ++G TQ+ S ++ F++ + MLK L
Sbjct: 63 GRM---FEFFNDTGHQSLGARLIRITQDGSYSNYVKKFVTYSTPLPNMVESMLKDTFLTA 119
Query: 196 TFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPP 255
E R + + + + + + TI S+ PP
Sbjct: 120 KAEWGRVEHKGGESAGKNQGSKEKNAPRKIEFAMKQITI---------SIKESYQKNEPP 170
Query: 256 FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKA-----PQLLLLDADIEDKDEQA----- 305
+RLS + R GLCF C+E++ PGHRCK P L +L+ + + D+ +
Sbjct: 171 VKRLSDTKFRARLDNGLCFKCNEKYSPGHRCKVREKREPMLFILNEEESNGDDSSSEGVA 230
Query: 306 -EALE----ELPETLEVSLKALTGATPQNTMRLKGNLK-KHGVTILIDSSSTHIFLNSSL 359
E +E +L ET E+ L+ +T T + TM+LKG +K K G
Sbjct: 231 EEVIELNQLDLAETTEIELRTITNFTSKGTMKLKGKVKGKRG------------------ 272
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
TQF VT+ D G C V + Q DF + + D+VLG
Sbjct: 273 -----------TQFVVTIGDDTRCKGRGVCKRVELRLQELTIIADFLAVELGNVDLVLGM 321
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+WL ++G + + LTM F K + + L G
Sbjct: 322 QWLDTIGTMKVHWPSLTMTFLAKDKKIVLKG 352
>gi|225016150|gb|ACN78974.1| retrotransposon protein [Glycine max]
gi|225016158|gb|ACN78981.1| retrotransposon protein [Glycine max]
Length = 1261
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 118/248 (47%), Gaps = 47/248 (18%)
Query: 217 RPSMSRPSPPLLNSSPTITKTGGSSQP--SLLGPPP--PGLP--PFRRLSVAEQTERRAK 270
R S R SP L S P+ ++P SLL P P P PF+ LS E RR K
Sbjct: 319 RRSSVRTSPSLSYSFPSRLSPPVVTKPVESLLTPSPTKPATTTIPFKCLSPEELAIRREK 378
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDAD---IEDKDEQAEALEELPETLE-----VSLKAL 322
GLCFN DE++ GH+C L + D ++D D + L + E +SL AL
Sbjct: 379 GLCFNYDEKYSRGHKCTPSLFLFVTEDEECLQDSDSNPSSPTALVASQETSPAQISLHAL 438
Query: 323 TGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV 382
+G HG + FL P TT+T +VTV +G
Sbjct: 439 SG---------------HG--------APETFLQ---------PQTTST-LRVTVGNGEE 465
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
+ + C V V+ Q F +DF +LP+ G D+VLG +WL+SLG +L D++ LTM+F +
Sbjct: 466 LQCNQVCPEVAVHIQAHTFLVDFHILPICGADVVLGVQWLKSLGPVLTDYATLTMKFIYN 525
Query: 443 GQTVQLTG 450
+ ++L G
Sbjct: 526 DKLIELKG 533
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 44 RFQEDRNNNQPLQINNQQPE-PAGRIGGALVQPRH-IRLDFLVLSGENPTSLIFRCEQYQ 101
+F E + L+ + P P+ G P + ++L+ +G +P IF+ Q+
Sbjct: 25 KFDELLHRMTQLETEHASPRVPSPSPGATTTNPTYRMKLEVSRFNGSDPEGWIFKITQFF 84
Query: 102 RLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF--GTFEDG--- 156
A + + L++A +++G A+ W+ W+ + +W+ F A+ +F T+ED
Sbjct: 85 EYHATPDHERLTIASFYMEGLALAWFQWMHRNGQLSSWSTFLHAIHARFLSSTYEDPTGL 144
Query: 157 -----------------DAVGTQ--NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTF 197
+A+ + L F +SCF+SGL I+ VQ+++P SL+Q
Sbjct: 145 LCKLTQRSIVSAYLSEFEALANRIIGLLAPFVLSCFVSGLNPVIQREVQVMQPHSLVQAI 204
Query: 198 ELARFQEEYAAVSNRR 213
AR EE + R
Sbjct: 205 SFARLHEERMLIRKMR 220
>gi|227438239|gb|ACP30609.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2726
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 107/517 (20%), Positives = 202/517 (39%), Gaps = 77/517 (14%)
Query: 4 KELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQED-RNNNQPLQINNQQP 62
KE + R E+L+ + +++L + +N + R D R++N + +N +
Sbjct: 1204 KEADARFEELNQRLGSILQILEKSNNRNDD----------RPHHDPRSSNPQVYHSNWER 1253
Query: 63 EPAGRIGGALVQPRHI--------RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSL 114
P R+ G ++ +++ + SG+ P I E++ + +T+ L L
Sbjct: 1254 NPEERVLGYRSGDMNLANRESMLRKIEMPLFSGKQPYVWITEVERWFSIGKYDDTERLEL 1313
Query: 115 AIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGT---------------------- 152
L+G W+ W + G W +FK LV +F
Sbjct: 1314 VGLSLEGKVKKWFGWELKRRGFRDWREFKEKLVLRFAESIEEEPEIRLFSIKQTGSVSDY 1373
Query: 153 ---FEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYA-- 207
FE+ + + L ++ I F +GL +++K +++ +P L E A
Sbjct: 1374 ISEFEELSGL-VKGLDDNLLIKIFYTGLNQEMKEVIRIKEPVGLENHIAAVLRMESSAFC 1432
Query: 208 -----AVSNRRIPPRPSMSRP---------SPPLLNSSPTITKTGGSS-----QPSLLGP 248
A + +I + P ++S T+ GGSS Q
Sbjct: 1433 KVVSEATKHDKIEHKQHQHNPLRSSSHYNSHRRYVDSENKFTRAGGSSSTTAQQKKESEN 1492
Query: 249 PPPGLPPFRRLSVAEQTERRAKGLCFNCDEQ-FKPGHRCKAPQLLLLDA-------DIED 300
++ + E R + +CF C + + H+C + ++ +ED
Sbjct: 1493 SSSNESKVKKYTNEELDRMRKEFICFKCGAKGWTRAHKCPNKDVRVMTTLNGLQMEVVED 1552
Query: 301 KDEQAEAL---EELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
+++ E ++ E +SL + G T +L G ++K V +++DS ++H F+
Sbjct: 1553 QEDDGEEFFFEAQMQELCTLSLNSYLGVGSPKTTKLYGKIQKTDVIVMLDSGASHNFITP 1612
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
S+ + V T F + + +G ++S G C V F DF L + D++L
Sbjct: 1613 SIVTKLKLKVCAETSFDILLGNGASVNSLGVCREVSFQLADATFTSDFIALELGMVDVIL 1672
Query: 418 GAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
G +WL +LG D+ + + F G V L G SL
Sbjct: 1673 GIQWLETLGRCEVDWKEQELSFIHGGVKVTLFGDPSL 1709
>gi|77552523|gb|ABA95320.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 584
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 162/395 (41%), Gaps = 79/395 (20%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
RL+ + +GE+P + +CE++ + ++LAI HL G A+ W+ + +
Sbjct: 216 RLEIPLFTGEDPIDWLKQCEKFYEITGTPYDQWVNLAIAHLQGRAMKWFRGVGIPWQLIP 275
Query: 139 WAQFKRALVTQFGTFEDGDAVGT-QN----------------------------LPESFF 169
W Q+ + T+F + +AV QN L E +
Sbjct: 276 WPQWCHMVSTRFSAANEHEAVELFQNVKQYGSTVEQYIDKFEEYVDLVRRDHPYLQEQYL 335
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLN 229
SCF+ GLREDIK V KP LL+++ A+ E+ A + R++ LN
Sbjct: 336 NSCFIGGLREDIKHDVCGQKPQGLLESYWYAKNYEK--AANARKVA------------LN 381
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
S + + + LG P + E+ E R C+ C E + P H+CK
Sbjct: 382 FSRNRNQN---TNFNNLGRNANNRP---QRGDGEKKEDRK---CWFCKEPWFPRHQCKVK 432
Query: 290 QLL------------------------LLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
Q + L D + +Q A EEL + VS A +G
Sbjct: 433 QAINALLVENEPCTEEEEDESKEKEQEELATDQIEAPKQEGAHEEL---MSVSFSAASGT 489
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
T +T + + LIDS ST F+ A + CP+ T+T +V VA GG + S
Sbjct: 490 TRPDTFSVLIMINGKQAVGLIDSGSTGTFMTHEFAVKCKCPIATSTIKKVIVAGGGELKS 549
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+ V QG +F F L+ + G D++LGA+
Sbjct: 550 NLVVPEVAYKIQGVKFVNAFSLITLKGYDVILGAD 584
>gi|147822176|emb|CAN68077.1| hypothetical protein VITISV_042019 [Vitis vinifera]
Length = 480
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 99/191 (51%), Gaps = 4/191 (2%)
Query: 261 VAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPET-LEVSL 319
+ E+ R K F CDE+++ H+CK Q LLD + + EA ++ E L VS+
Sbjct: 159 LKERCTRDGKN-GFVCDEKYELVHKCK--QNFLLDGHESEWEAICEAENDIKEDDLMVSI 215
Query: 320 KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
A+ G TMR+ GN+KK V I ID ST FL+ + K+ C + T + V D
Sbjct: 216 NAIFGLASHQTMRIHGNIKKKVVIIXIDLRSTXNFLDLVVXKRTRCLIQITNPMKAAVVD 275
Query: 380 GGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
G I+S N QG +F +D L+P+ G D+VLG +WL LG ILWDF L +F
Sbjct: 276 GTRITSDATYRQSTWNMQGKEFQVDLRLIPLGGYDMVLGIQWLAELGPILWDFKNLRXKF 335
Query: 440 TWKGQTVQLTG 450
G+ L G
Sbjct: 336 IVDGRKFMLRG 346
>gi|124360394|gb|ABN08407.1| Peptidase aspartic, active site [Medicago truncatula]
Length = 435
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 17/211 (8%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRC--KAPQLLLLDADIEDKDE----QAEALEE 310
R LS E +RR KGLCF C + P H+C K +++L+ D ED++E E ++
Sbjct: 48 RSLSSQEIADRRQKGLCFKCGGPYHPRHQCPDKNLSVMVLEDDSEDENEVRVLNDEDVDT 107
Query: 311 LPETLEVSLKALTGATPQN-----------TMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
E L++++ A + +R +G +++ V +L+DS + F++ L
Sbjct: 108 GAEELQLNVLTFENALTFDRQTEYYQDRFQCIRFQGKVREIPVLMLVDSGANKNFMSRRL 167
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
A G +T T ++ + DG V+ + G+C V ++ QG ++ +D L + G D+VLG
Sbjct: 168 ALALGLRITETPVRRIRLGDGHVVPTLGECHGVIISVQGVEWEIDVMLFELRGYDLVLGM 227
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
WL +G D+ + M+F ++G+ +++ G
Sbjct: 228 AWLTQIGCTCIDWVEKKMRFDYQGEWIEIRG 258
>gi|124360392|gb|ABN08405.1| Peptidase aspartic, active site [Medicago truncatula]
Length = 435
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 110/211 (52%), Gaps = 17/211 (8%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRC--KAPQLLLLDADIEDKDE----QAEALEE 310
R LS E +RR KGLCF C + P H+C K +++L+ D ED++E E ++
Sbjct: 48 RSLSSQEIADRRQKGLCFKCGGPYHPRHQCPDKNLSVMVLEDDSEDENEVRVLNDEDVDT 107
Query: 311 LPETLEVSLKALTGATPQN-----------TMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
E L++++ A + +R +G +++ V +L+DS + F++ L
Sbjct: 108 GAEELQLNVLTFENALTFDRQTEYYQDRFQCIRFQGKVREIPVLMLVDSGANKNFMSRRL 167
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
A G +T T ++ + DG V+ + G+C V ++ QG ++ +D L + G D+VLG
Sbjct: 168 ALALGLRITETPVRRIRLGDGHVVPTLGECHGVIISVQGVEWEIDVMLFELRGYDLVLGM 227
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
WL +G D+ + M+F ++G+ +++ G
Sbjct: 228 AWLTQIGCTCIDWVEKKMRFDYQGEWIEIRG 258
>gi|38568032|emb|CAD40406.3| OSJNBa0065J03.2 [Oryza sativa Japonica Group]
Length = 1629
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 168/404 (41%), Gaps = 44/404 (10%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW----- 139
GENP CEQY + + + +A + G+A W + + +TW
Sbjct: 213 FDGENPQMWKSNCEQYFDIYGINPMHWVKVATLNFSGNAAFWLQSIRSQIMGITWQTLCD 272
Query: 140 ---AQFKRAL--------------------VTQFGTFEDGDAVGTQNLPESFFISCFLSG 176
A+F R + V QF + L +F++ F+ G
Sbjct: 273 LICARFTRDIQEALIRKWFHAQQNSTVTEYVEQFDSIMHQLMAYDSALTPVYFVTKFIEG 332
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMS----RPSPPLLNSSP 232
LR+D++ V + +P L +A QEE SN+ R S + RP P L N P
Sbjct: 333 LRDDVRGAVMLQRPQDLDSACSIALLQEEILE-SNKSTTHRRSDNHIAFRPVPKLNNYVP 391
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLS---VAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
G S G+ + + ++ RRAKGLCF C E++ H+C
Sbjct: 392 V--PPGQRSVAVSAHDDKKGVESAKSREDKFASLKSYRRAKGLCFVCGERWGRDHKCATS 449
Query: 290 -QLLLLDADIEDKDEQAEALEELPETLEV-SLKALTG---ATPQNTMRLKGNLKKHGVTI 344
QL ++ +E + + + L + S++A+ G A Q + L+G ++ + +
Sbjct: 450 VQLHVVQELLEAMRSECNSDDILTAKDPIESVEAIDGGLMAISQQAL-LRGWVQGTEILM 508
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD 404
LIDS STH F++ S+ + + + V +ADGG + + + +QG F D
Sbjct: 509 LIDSGSTHSFIDESIGSKLVGLIPLSRSVTVKIADGGTMKCTQQILGCRWWTQGHYFKSD 568
Query: 405 FFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
F LL + D +LG +WL + D+ ++ GQ V+L
Sbjct: 569 FKLLNLGSYDAILGMDWLEQFSPMQVDWVNKWLEVVIDGQPVRL 612
>gi|147828709|emb|CAN66228.1| hypothetical protein VITISV_012977 [Vitis vinifera]
Length = 1258
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 47/327 (14%)
Query: 84 VLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLE--QTMGNMTWAQ 141
V +GENP IFR +Y L E + L +A +LDGDA+ WY W + + G++ +
Sbjct: 180 VFTGENPDGWIFRANRYFATYRLTEEEKLVVATMNLDGDALSWYQWTDSREAFGSLG-ME 238
Query: 142 FKRALVTQFGTFEDGD--------------AVGTQNLPESFFISCFLSGLREDIKIGVQM 187
+ A V +++ + A + + E S F++GL +I+ +
Sbjct: 239 LEEATVASLSSWQCDNGGQMAAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAKL-- 296
Query: 188 LKPASLLQTFELARFQEEYAAVSNR----RIPPRPSMSRPSPPLLNSSPTITKTGGSSQP 243
LLQ + L E V +R R+ P + + L ++ K G + Q
Sbjct: 297 -----LLQPYGLGHLMEMAQRVKDRNLTMRVAREPKDPKSTKMLSSAIRGDWKIGKNFQT 351
Query: 244 SLLGPPPPGLP-----PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP-QLLLLDAD 297
+ + P +RL+ +E R KGLCF CDE+F PGH K ++LL+ D
Sbjct: 352 RAVAVSEKTISQRREIPIKRLAESELQALREKGLCFKCDEKFSPGHHYKKELRVLLVHED 411
Query: 298 IEDKDEQAE-------ALEELPETLEVSLKALTGATPQNTMRLKGNL-KKHGVTIL---- 345
E++D Q + +L EL + +E+SL ++ G T TM++KG + K G+T +
Sbjct: 412 EEEEDNQFDGGTTEEPSLIELKDVVELSLNSVVGLTTSGTMKIKGTIGSKEGLTXVEXFL 471
Query: 346 -IDSSSTHIFLNSSLAKQYGCPVTTTT 371
++ +T + L G T+TT
Sbjct: 472 PLELGNTDVILGMPWLGTLGDVKTSTT 498
>gi|124359710|gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
finger, CCHC-type; Peptidase aspartic, active site;
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 1297
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 256 FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL---------------LLDADIED 300
F LS E ER+ KGLCF C F P H+C QL LL +++D
Sbjct: 96 FTHLSYNELMERKQKGLCFKCGGPFHPMHQCPDKQLRVLVLEEDEEGEPEGKLLAVEVDD 155
Query: 301 KDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA 360
++E E + L + PQ +++L G +K+ V +L+DS +TH F++ L
Sbjct: 156 EEEGD------GEMCMMEFFHLGHSRPQ-SIKLMGVIKEVPVVVLVDSGATHNFISQQLV 208
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+ V T + + DG + G C + V+ +D L + G D+VLG E
Sbjct: 209 HKMNWAVVDTPCMSIKLGDGSYSKTKGTCEGLEVDVGDVHLEIDAQLFDLGGVDMVLGIE 268
Query: 421 WLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
WLR+LG ++ +++K TM F + V + G D+ A+A
Sbjct: 269 WLRTLGDMIVNWNKQTMSFWHNKKWVTVKGMDTQGGAIAT 308
>gi|108864659|gb|ABA95357.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2811
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 16/235 (6%)
Query: 261 VAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL--------LLDADIEDKDEQAEALEELP 312
VA + RRA+GLC+ C E++ P H+C L +L AD+ + ++ A++ L
Sbjct: 1735 VALKAYRRAQGLCYVCAEKWSPTHKCSGSVQLHAVQELFSVLAADVSEGEQDADSTSSL- 1793
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ +SL+A+ G +T+RL+G+++ V IL+DS S+ FL+S + + T
Sbjct: 1794 --MAISLQAIQGTVSAHTLRLQGSIQGFDVLILVDSGSSCSFLSSVVLPHLTGVKSLLTP 1851
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDF 432
QV VA+G V+S + + QG QF DF LLP+ D++LG +WL + ++
Sbjct: 1852 VQVKVANGAVLSCTSELPAAKWEVQGHQFSTDFKLLPLDNYDMILGMDWLEKYSPMDINW 1911
Query: 433 SKLTMQFTWKGQTVQLTGYDSLPPAL--ANHGEINQLLLQEKQGIFFQIMAITTS 485
T+QF ++V+L G + P L + I+QL L QG ++ +T S
Sbjct: 1912 QAKTIQFGLHDKSVELKG---VVPELDKCDLVSIHQLQLLHNQGAVESLVQLTAS 1963
>gi|15042811|gb|AAK82434.1|AC091247_1 putative polyprotein, 5'-partial [Oryza sativa Japonica Group]
Length = 799
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 15/199 (7%)
Query: 267 RRAKGLCFNCDEQFKPGHRC---KAPQLLLLDADIED---KDEQAEA---LEELPETLEV 317
RRA+GLCF C +++ PGH C + PQL ++ E DE +A LE ++ +
Sbjct: 52 RRAQGLCFKCGDKYIPGHVCSKQETPQLKAMELQEEAIVLTDELLDAVTGLELSEDSANL 111
Query: 318 SLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC---PVTTTTQFQ 374
SL AL G + N ++L+ + +L+DS S+H F+NS+L + P+ T+
Sbjct: 112 SLHALAGTSHTNIVQLRALSSNQVLIVLVDSGSSHSFINSALCHRLHLLSEPIPPTS--- 168
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
V VA+G V+ K S QG QF +LP+ G D+VLG +WL + D++
Sbjct: 169 VRVANGEVLVCDAKISQFDWWVQGHQFSFPVRVLPMGGYDLVLGMDWLTQYSPMTCDWAA 228
Query: 435 LTMQFTWKGQTVQLTGYDS 453
+QF+++G ++L G S
Sbjct: 229 KWLQFSYQGSLIKLQGIQS 247
>gi|77555928|gb|ABA98724.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1269
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 142/346 (41%), Gaps = 53/346 (15%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
GENP + +CE Y R++ + + +A G A+ W + M W F
Sbjct: 131 FEGENPRAWKMKCETYFRVSGISPDVWVGVAALQFSGSALVWLQSTNTHVELMGWNDFSE 190
Query: 145 ALVTQFGT---------FEDGDAVGT-------------------QNLPESFFISCFLSG 176
A+ +FG F+ GT + FFI+ FL G
Sbjct: 191 AVCAKFGREEFQSLIRQFKRLRQEGTILSYVEKFNELMHQLYAHHPSWNSVFFITEFLDG 250
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR---RIPPRPSMSRPSPPLLNSSPT 233
L+ ++ V + +P L +LA QEE R RI S P+ N + T
Sbjct: 251 LKPEVSSAVILHRPNDLDTAVDLACLQEEVLEAGRRDSHRIDGGFSHRTGQRPVGNVAFT 310
Query: 234 ITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK-APQLL 292
+ GG P A + R+AKGLC C E++ H+C QL
Sbjct: 311 PGRAGGRVDDRT--------QPLEDRVAALRAYRKAKGLCHTCGEKWSREHKCGPTVQLH 362
Query: 293 LL------------DADIEDKDEQAE-ALEELPETLEVSLKALTGATPQNTMRLKGNLKK 339
++ +A DE E A E + E ++S +A+ G T+RL+G +++
Sbjct: 363 VVEELLDLLEEPDGEAKSAGTDELTEKASETVSEVCQISKEAMLGTESSGTLRLQGLIQQ 422
Query: 340 HGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + +L+DS STH F++ +A + T F+V VADGG++ S
Sbjct: 423 YEIMMLVDSGSTHSFISEEMASKIRGNQKTVQAFRVRVADGGILQS 468
>gi|449523988|ref|XP_004169005.1| PREDICTED: uncharacterized protein LOC101225033 [Cucumis sativus]
Length = 307
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 255 PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ-----LLLLDADIED-------KD 302
P RRLS AE RR KGLCF C+E++ H+CKA + ++L+ + E+ +
Sbjct: 85 PTRRLSDAEFQSRREKGLCFLCNEKYSHDHKCKAKEQRELRMILVTKEGEEFNIEEGGGN 144
Query: 303 EQAE-----ALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
EQ+E +EE +E+S+ ++ G + TM++ G L+ V IL+D +TH ++
Sbjct: 145 EQSELNTIEVVEESHAVVELSINSVVGLSNPRTMKVNGWLQGKEVIILVDRGATHNLISE 204
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
L K+ T+ + V + G I G C V + ++ +F L + G D++L
Sbjct: 205 KLVKELQLNTKDTSNYAVILGSGTTIKGKGVCEAVELMIGDWRVIDEFLPLELGGVDVIL 264
Query: 418 GAEWLRSLG 426
G +WL SLG
Sbjct: 265 GMQWLYSLG 273
>gi|147799941|emb|CAN70500.1| hypothetical protein VITISV_020483 [Vitis vinifera]
Length = 672
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 276 CDEQFKPGHRCKAP-QLLLLDADIEDK--DEQAEALEELPETLEVSLKALTGATPQNTMR 332
CD++F PGHRCK ++L + + ED D A L EL + +E+SL + G T TM+
Sbjct: 87 CDKEFSPGHRCKKELRVLPVHENEEDNQFDSGATPLTELKDAVELSLNXMVGLTTSRTMK 146
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK--CS 390
+KG + + IL+D TH FL L ++ P+TTTT + V + G IS GK C
Sbjct: 147 IKGTIGSNEXIILVDYGVTHDFLFLDLVQRLALPLTTTTSYGVVMGIG--ISMKGKSICK 204
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
V ++ QG DF L + D++LG WL +LG + +++ LT++
Sbjct: 205 GVCISMQGLIVVEDFVPLELGSTDVILGMPWLGTLGDVEVNWNMLTIKI 253
>gi|21671877|gb|AAM74239.1|AC074355_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1065
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 185/464 (39%), Gaps = 62/464 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P RCE Y + + +A + A W + +
Sbjct: 172 KLDFPKFDGTDPEDWKMRCEHYFDVNNTFPGLWVRIATIYFLDRAASWLRSSKAHVRFPV 231
Query: 139 WAQFKRAL------------------VTQFGT----FEDGDAVGTQNLPES------FFI 170
W F A+ + Q GT +E D + Q L +
Sbjct: 232 WENFCIAVSHKFDRDQHETLIRQMDSIKQTGTVWEYYERFDELMNQLLTYDPVLNMRYLT 291
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
F GLR++I+ V + +P L +A QEE +S P++ + L
Sbjct: 292 HRFTEGLRQEIRNAVLLQRPKDLENALAVAMLQEE--VISETMTVSVPNLKKSDGGNLQI 349
Query: 231 SPTITKTGG------------------SSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGL 272
P + G S L G + ++ Q RRA+GL
Sbjct: 350 RPNVAFKGALPLPLPPNLGSGSGVLNRSEDRKFLDNTKTGTSNDKISTLKAQ--RRAQGL 407
Query: 273 CFNCDEQFKPGHRC------KAPQLLL--LDADI---EDKDEQAEALEELPETLEVSLKA 321
C+ C E++ P H+C A Q LL L +D+ + ++++ L+ P + +S++A
Sbjct: 408 CYICAEKWSPIHKCANTIQLHAVQELLTVLQSDLLSDQGISDESDGLDS-PGLMSISVQA 466
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+ G MR+ G ++ V IL+DS ST F++S +A+ VT QV VA+G
Sbjct: 467 INGFETVGCMRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQGVVTLEPPVQVKVANGS 526
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
+++ +QG+ F+ D +L + D++LG +WL + + D+ + +W
Sbjct: 527 ILTCLTSVPRCEWMTQGWVFYTDLKVLNLGSYDMILGMDWLMAHSPMQVDWVNKLLTVSW 586
Query: 442 KGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
+ +++ L G S + L L+++Q I I T S
Sbjct: 587 RKESITLQGILSETEQCSQLSSQQFLELKDRQAISHLIQLCTLS 630
>gi|147775005|emb|CAN70471.1| hypothetical protein VITISV_013478 [Vitis vinifera]
Length = 1122
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 81/140 (57%)
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
MR+ + +H V +LIDS STH F++ +A V T F V VA+G + G+
Sbjct: 1 MRITAKIGQHEVVVLIDSGSTHNFISEKVADMLHLSVVPTKPFTVKVANGTPLKCQGRFE 60
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
HV V QG F L + LP++G D+VLG +WL LG ++ ++ KLTM+F W+ QT +L G
Sbjct: 61 HVHVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTVVCNWKKLTMEFQWENQTHKLQG 120
Query: 451 YDSLPPALANHGEINQLLLQ 470
++ +A+ +++ L Q
Sbjct: 121 TNTQTIQVASLKAVSKELRQ 140
>gi|77551190|gb|ABA93987.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1485
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 170/422 (40%), Gaps = 82/422 (19%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P + RCE Y + + +A + G A W + +
Sbjct: 181 KLDFPHFDGVDPQNWRMRCEHYFGVYGTHLILWVRVATIYFTGRAASWLRSSKAHLRFSE 240
Query: 139 WAQFKRALVTQFGT----------------------FEDGDAVGTQNLP------ESFFI 170
W+ F A+ +F +E D V Q L + +
Sbjct: 241 WSDFCLAVDRKFDRDRHQMLIRQIEQIKQTGKVEEFYEHFDDVMNQLLAYDPMYNQLMIV 300
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
F GLR DI+ V M +P L +A QEE+ +
Sbjct: 301 HRFTEGLRFDIRHAVMMQRPRDLETALAIACLQEEW--------------------METQ 340
Query: 231 SPTITKTGGSSQPSLLGPPPPGLPP-----------------FRRLSVAE-----QTERR 268
P + G P + G P LPP + ++A+ + RR
Sbjct: 341 KPKEFRKLGDHVPRIKGAYPLPLPPTKVSESSAGASKSSSEPVKTTAIADRMRALKAHRR 400
Query: 269 AKGLCFNCDEQFKPGHRCKAP-QL--------LLLDADIEDKDEQAEALEELPETL-EVS 318
A+GLC+ C E++ P H+C QL LL D + + E E P +L +S
Sbjct: 401 AQGLCYLCAEKWSPSHKCSGSVQLNAVQEVFALLQQNDSDSGNSSGEDAE--PHSLFSLS 458
Query: 319 LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVA 378
+ A+ G T TM L+G ++ + + IL+DS S+ F++SS+ Q + FQV VA
Sbjct: 459 VHAIQGTTTAQTMCLQGIIQGYDILILVDSGSSCSFISSSVMPQLSNLIQLPVSFQVKVA 518
Query: 379 DGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
+G ++S + ++V + QG F +LP+ D++LG +WL + D+ + T++
Sbjct: 519 NGQMLSCETELANVSWSVQGHHFCSALKVLPLQSYDMILGMDWLERYSPMDIDWQQKTIR 578
Query: 439 FT 440
FT
Sbjct: 579 FT 580
>gi|449470397|ref|XP_004152903.1| PREDICTED: uncharacterized protein LOC101208187 [Cucumis sativus]
Length = 1969
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 142/380 (37%), Gaps = 68/380 (17%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+L+ V SGE+P +R E Y ++ L + + L + + L G + W+ W E +
Sbjct: 706 KLEMSVFSGEDPDGWFYRAEHYFQMHLLNKREKLKIVVVSLKGKGLSWFRWAENQKRFRS 765
Query: 139 WAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFE 198
W + + +F + E GTQ + F++ G +D
Sbjct: 766 WKELNERMYNRFRSREQ----GTQCVR---FLAIKQEGKVKDY----------------- 801
Query: 199 LARFQEEYA-AVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFR 257
L RF+E A V + + P++ + + G + PPFR
Sbjct: 802 LQRFEELSAPLVEIAEDVLEGTFTNGLDPMIRTEVLSMRAVGLKD---MMEAAQREPPFR 858
Query: 258 RLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLL-------DADIEDKDEQAEALEE 310
R + +E RR K LC+ CDE F GHRCK +L L D +ED + + +E
Sbjct: 859 RWTDSELQARRDKDLCYRCDEPFSEGHRCKNKELRLYLVADDLEDTVMEDIENKGTKVEV 918
Query: 311 LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
P +E+S+ ++ G ++ P T
Sbjct: 919 SP-VVELSVNSVVGLMA--------------------------------PEELNIPTAET 945
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILW 430
T + + + G + G C V DF L + D+VLG WLR GA+
Sbjct: 946 TSYGIIMGSGKAVQGKGMCKGATVGLPVLTIVEDFLPLELGNLDMVLGMMWLRKQGAMTV 1005
Query: 431 DFSKLTMQFTWKGQTVQLTG 450
D+ +L M F + L G
Sbjct: 1006 DWKELAMTFVVGDSKIVLKG 1025
>gi|147790727|emb|CAN70128.1| hypothetical protein VITISV_002403 [Vitis vinifera]
Length = 770
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 146/355 (41%), Gaps = 100/355 (28%)
Query: 112 LSLAIGHLDGDAVPWYHWLEQTMGN----MTWAQFKRALVTQFGTFEDGDAVGTQNLPES 167
+SL HL+G+A W+ WL + +TW F+ L +F E D
Sbjct: 104 VSLTSFHLEGEANLWWKWLRRAYWEEGRLVTWESFEEELWARFDPIESED---------- 153
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPL 227
F L ++ I + +K L + ++R PP P+ +
Sbjct: 154 -----FDEALSKE-AISLAHMKDEQLQRQIRISR-------------PPLPTRT------ 188
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK 287
L++ PT TK P +RL+ E RRA+ LCFNC+++F GHRC+
Sbjct: 189 LSALPTPTKAS----------------PVKRLTWDEMQRRRAQRLCFNCNDKFTVGHRCQ 232
Query: 288 APQLLLLDADIEDKDEQAE------ALEELPETL---EVSLKALTGATPQNTMRLKGNLK 338
PQLLLL+ + + E ++E L ++SL LTG + TMR+K +
Sbjct: 233 GPQLLLLEGHTKTNEIMCEEVVDENSIENQHADLIEPKISLHVLTGWSIPRTMRIKAQIG 292
Query: 339 KHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQG 398
H + +LID STH FL++ + + Q V + D
Sbjct: 293 HHEIKVLIDRRSTHNFLSAKMVE--------ILQLSVILTD------------------- 325
Query: 399 FQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
+ ++ ++ +S E L + G F K+TM+F W+ Q +L G +S
Sbjct: 326 -RLSFEWLMVAISSV-----REGLNTYGL---SFRKMTMKFQWEDQERKLQGSNS 371
>gi|19881623|gb|AAM01024.1|AC090488_24 Putative retroelement [Oryza sativa Japonica Group]
Length = 954
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 185/464 (39%), Gaps = 62/464 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P RCE Y + + +A + A W + +
Sbjct: 108 KLDFPKFDGTDPEDWKMRCEHYFDVNNTFPGLWVRIATIYFLDRAASWLRSSKAHVRFPV 167
Query: 139 WAQFKRAL------------------VTQFGT----FEDGDAVGTQNLPES------FFI 170
W F A+ + Q GT +E D + Q L +
Sbjct: 168 WENFCIAVSHKFDRDQHETLIRQMDSIKQTGTVWEYYERFDELMNQLLTYDPVLNMRYLT 227
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
F GLR++I+ V + +P L +A QEE +S P++ + L
Sbjct: 228 HRFTEGLRQEIRNAVLLQRPKDLENALAVAMLQEE--VISETMTVSVPNLKKSDGGNLQI 285
Query: 231 SPTITKTGG------------------SSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGL 272
P + G S L G + ++ Q RRA+GL
Sbjct: 286 RPNVAFKGALPLPLPPNLGSGSGVLNRSEDRKFLDNTKTGTSNDKISTLKAQ--RRAQGL 343
Query: 273 CFNCDEQFKPGHRC------KAPQLLL--LDADI---EDKDEQAEALEELPETLEVSLKA 321
C+ C E++ P H+C A Q LL L +D+ + ++++ L+ P + +S++A
Sbjct: 344 CYICAEKWSPIHKCANTIQLHAVQELLTVLQSDLLSDQGISDESDGLDS-PGLMSISVQA 402
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+ G MR+ G ++ V IL+DS ST F++S +A+ VT QV VA+G
Sbjct: 403 INGFETVGCMRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQGVVTLEPPVQVKVANGS 462
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
+++ +QG+ F+ D +L + D++LG +WL + + D+ + +W
Sbjct: 463 ILTCLTSVPRCEWMTQGWVFYTDLKVLNLGSYDMILGMDWLMAHSPMQVDWVNKLLTVSW 522
Query: 442 KGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
+ +++ L G S + L L+++Q I I T S
Sbjct: 523 RKESITLQGILSETEQCSQLSSQQFLELKDRQAISHLIQLCTLS 566
>gi|14626274|gb|AAK71542.1|AC087852_2 putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108711059|gb|ABF98854.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 258
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 4/176 (2%)
Query: 310 ELPETLE---VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCP 366
E P+ LE SL A+ G +TM+++ + +T L+DS STH F+ A + G P
Sbjct: 11 EEPQDLESPVFSLHAIAGVPVADTMQVQVTVGATTLTALLDSGSTHSFIAEEAACRTGLP 70
Query: 367 VTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLG 426
V + TVA+G ++ G ++ G F +D F++P++G D+VLG +W+ SLG
Sbjct: 71 VQPRPRMTATVANGEKVACPGVIRQAVLSIDGSLFTVDLFVIPLAGYDMVLGTQWMASLG 130
Query: 427 AILWDFSKLTMQFTWKGQTVQLTGYDSLP-PALANHGEINQLLLQEKQGIFFQIMA 481
I+WDF++ TM F + G+T+ G S P P + ++ LL E F + A
Sbjct: 131 PIVWDFTERTMSFQYHGRTICWAGVPSSPAPRIRVTTAASESLLDELLADFGDVFA 186
>gi|440577319|emb|CCI55326.1| PH01B001I13.22 [Phyllostachys edulis]
Length = 1426
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
+SL ALTG TM+ + + L+DS STH F+ + L + G + T V
Sbjct: 1259 ISLLALTGIRKAQTMQPPVLINGIQLMALVDSGSTHNFIAAELIDKVGLKLAPRTGLSVA 1318
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
VA+G I+ G C P++ F LD +P+ G DIVLG +WLRSLG I WDFS LT
Sbjct: 1319 VANGNKITCGGVCYTTPISIDHEHFVLDLLTIPLGGFDIVLGVQWLRSLGPITWDFSNLT 1378
Query: 437 MQFTWKGQTVQLTGYDSLPPALANH-----GEINQLLLQEKQGIF 476
M+ + +TV G + PA H GE+ + LL E +F
Sbjct: 1379 MRLHRQDRTVTWHGVAPVQPARHLHAAAAVGELMEELLAEFPSVF 1423
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 75 PRHIRLDFLVLS-GENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVP--WYHWLE 131
PR ++L+FL E+P I RCE + R D + L H+ G +V WY +E
Sbjct: 1144 PRCVKLNFLTFDYKEDPLPWINRCEPFFRAQKTPMDDRVWLVTYHMSGGSVAHLWYMRVE 1203
Query: 132 QTMGNMTWAQFKRALVTQFG 151
+ G W F + +FG
Sbjct: 1204 RMDGMPNWRHFTDLVPRRFG 1223
>gi|242095932|ref|XP_002438456.1| hypothetical protein SORBIDRAFT_10g020014 [Sorghum bicolor]
gi|241916679|gb|EER89823.1| hypothetical protein SORBIDRAFT_10g020014 [Sorghum bicolor]
Length = 1414
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 171/451 (37%), Gaps = 94/451 (20%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
P+H R DF G +P + +C+ Y R L + + +A HLD A W+ L++
Sbjct: 50 PKHKRWDFPRFDGTTDPLLFLNKCDAYFRQHRTLAEERVWMASYHLDDVAQLWFTQLQED 109
Query: 134 MGNMTWAQFKRALVTQF------------------GTFEDGDAVGTQNLP------ESFF 169
G +W +FK L +F GT E+ LP ES
Sbjct: 110 EGTPSWGRFKDLLDLRFGPPLRSAPLFELAECRRTGTVEEYSNRFQALLPRAGRLEESQR 169
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELAR----FQEEYAAVSNRRIPPRPSMSRPSP 225
+ + GL + V++ P +L LAR + E V+ R R P+P
Sbjct: 170 VQLYTGGLLPPLSHAVRIHNPETLPAAMSLARQIELMELERVPVAAARPATRALPPPPAP 229
Query: 226 PLLNSSPTIT---------------KTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAK 270
++ GG++ P RRLS EQ ERR
Sbjct: 230 RQAPAAALALPAPPAAAVLALPAPPNRGGAANPP------------RRLSTEEQAERRRL 277
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G+C+NC+E + GH ++ ++ + DE A A EE P SL A+ G NT
Sbjct: 278 GICYNCNEPYSRGHNRVCRRIFYIEG--VELDEGAAA-EEAP---VFSLHAVAGVPGTNT 331
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
++L+ + LID+ STH F+ A++ G + TVA+
Sbjct: 332 IQLRVTVGAAEFIALIDTGSTHSFIGEDAARRTGLTIEPRPGLTATVAN----------- 380
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
G D+VLG W+ LG I W+ + TM F G+++ G
Sbjct: 381 ---------------------GYDVVLGTNWMAPLGDITWNLTAGTMAFQHAGRSICWRG 419
Query: 451 YDSLPPALANHGEINQLLLQEKQGIFFQIMA 481
PA + E ++ LL F + A
Sbjct: 420 TAPTAPARLHAAEASEPLLDALLADFQDVFA 450
>gi|449524806|ref|XP_004169412.1| PREDICTED: uncharacterized protein LOC101228221 [Cucumis sativus]
Length = 703
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/431 (20%), Positives = 173/431 (40%), Gaps = 78/431 (18%)
Query: 108 ETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGD---------- 157
E + + + L+G+A+ WY W + +W +F++ L +F GD
Sbjct: 58 EIPLFDMRLRKLEGEALDWYKWKDDRTKINSWEEFRQLLWARFKPSGQGDKHARLMKLQQ 117
Query: 158 --------------AVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQ 203
+ +++ ++ S F+ GLRE+I+ ++ L P L +A+
Sbjct: 118 ETTVREYRRRVEQFSASLKDMSDAALESKFVCGLREEIQSEIRKLNPVGLEAKMLMAQVI 177
Query: 204 EEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSL------------------ 245
E+ V +RI + +P LLN + G +Q
Sbjct: 178 EDDQVVQLKRIHGVGA----NPSLLNKTSGNGPNGSGNQTGSKVMDRVATSRTITINPSR 233
Query: 246 --------------LGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQL 291
P+RR++ +E ++ KGL + +
Sbjct: 234 NSSSSSTTITSPHDFNAKNSMAQPYRRMTDSEMRMKKEKGLWEDLSGEIDK--------- 284
Query: 292 LLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSST 351
+ + ED++EQ E +SL +L G + T+++KG ++ V +L+D +
Sbjct: 285 --VAEETEDENEQINT-----EIANLSLHSLVGFSSPKTIKIKGEIRNCEVVVLVDGGAI 337
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + K+ PV T + V + GGV+ ++G C V + DF LP+
Sbjct: 338 HNFISEEVVKELKIPVETLDAYGVVLGTGGVVRATGMCKSVNLTIVNLSITHDFLPLPLG 397
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D+ LG WL +LG +++++ M+F+ V L G SL + + + + +E
Sbjct: 398 SADVNLGVTWLETLGKVIFNYKLSEMEFSLGEFLVILQGNKSLVKSQVSLKSM--IFKKE 455
Query: 472 KQGIFFQIMAI 482
QG+ ++ +
Sbjct: 456 DQGVLIELSTV 466
>gi|357143961|ref|XP_003573116.1| PREDICTED: uncharacterized protein LOC100827899 [Brachypodium
distachyon]
Length = 1665
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/418 (23%), Positives = 170/418 (40%), Gaps = 54/418 (12%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R + DF G+NP E+Y + + A H G+A W E
Sbjct: 332 RMPKTDFPKFDGDNPKWWKAVAEKYFSMYHVPRDTWARFATMHFLGNAALWLQTYEAEHE 391
Query: 136 NMTWAQFKRALVTQFGT-------------------------FED---GDAVGTQNLPES 167
+W + + +FG FE+ V ++ E+
Sbjct: 392 VDSWEELVVVVHAKFGKDKHHRYLEALERCKQTESVNNYFHKFEELRHKVLVHNRHYDEA 451
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEY------AAVSNRRIPPRPSMS 221
FF++ F++GL+ +I+ +++ KP ++ LA QEE + S + +PS
Sbjct: 452 FFVTKFVAGLKREIQKAIRLHKPRTVDAALSLAETQEEMLEEARLYSSSKLKHDYKPSYQ 511
Query: 222 RPS-PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
P + + P K G S+P + A + +RRA+G CF C +++
Sbjct: 512 FPGIGKGILTVPAEDKKKGDSKPV-----------WSEKMAALRAQRRARGECFKCGDKY 560
Query: 281 KPGHRCKAPQ--------LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
+PGH+C A L +L E EQ + + +S+ A +G + + +MR
Sbjct: 561 QPGHKCAASVPLHMVEELLEVLQVSTESDTEQENEDSDSDSLMHLSICATSGTSNKKSMR 620
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
L+G ++ V ILIDS S F++ + V VTVA+GG +S +
Sbjct: 621 LQGVMEGKQVLILIDSGSNGSFISQAAVAAIKLQVQPVPAVVVTVANGGKVSCDSAVPNA 680
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
QG F+ + + D++LG +WL + G + D+ K ++F G + L G
Sbjct: 681 TWTCQGHTFNSTLRVFNLPHYDMILGMDWLEACGKMWIDWPKKVLRFWHNGVRITLRG 738
>gi|147816473|emb|CAN64046.1| hypothetical protein VITISV_040537 [Vitis vinifera]
Length = 1259
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 128/298 (42%), Gaps = 53/298 (17%)
Query: 72 LVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLE 131
+ Q + +L+F + +PT + + +Q+ T + A HL+ +A W+ +
Sbjct: 77 MFQSKFAKLEFPRFAAGDPTMWLTKVKQFFDYQETPGTQKVQYAAYHLEDEANEWWQATK 136
Query: 132 QTMGN----MTWAQFKRALVTQFG--TFEDGDAV----------------------GTQN 163
+ +TW F+ L +FG ED D Q
Sbjct: 137 RAYAEEEAEITWEVFEEELWARFGPTECEDFDEALSKIKQAGXFRDYQREFERLVNKVQG 196
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRP 223
+ + F+ GL I G++M +P SL + LAR ++E R P P + R
Sbjct: 197 WTQKALVGTFMGGLHPAIADGIRMFRPKSLKEAISLARMKDEQLQRQRRTQPNTPQIQR- 255
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
++Q + GP +RLS E ++R+ GLCF+CDE++ PG
Sbjct: 256 ----------------NTQQNSKGPLTT-----KRLSWEEIRKKRSLGLCFSCDERYTPG 294
Query: 284 HRCKAPQLLLLDADIEDKDEQAEALEELPETL-EVSLKALTGATPQNTMRLKGNLKKH 340
H+C+ PQLLL++ E E +E E L E E+SL AL G + TMR+ + +H
Sbjct: 295 HKCRQPQLLLMEG--ESGWESSEMEEPLVEQEPEISLYALAGWSESRTMRIYXQIGQH 350
>gi|108862596|gb|ABA97714.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1287
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 17/213 (7%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLE 316
+RLS A+Q ERR GLC+N DE++ GH ++ +D +E
Sbjct: 245 KRLSQADQAERRRLGLCYNFDERYTRGHNRVCRRVFFIDG-----------VELADADDA 293
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
+ P + L + +DS STH F++ + A++ G P+ T +
Sbjct: 294 QAAADQDAEAP-----VAVALGPASLVAFLDSGSTHNFISEAAARRSGMPLHTRPRLTAM 348
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
VA+G ++ +G P+ G F D F++P+ G D+VLG WL +LG I+WD +
Sbjct: 349 VANGERVTCAGVLKAAPLTIDGALFPADLFVMPLVGFDVVLGTCWLGTLGPIVWDLASHR 408
Query: 437 MQFTWKGQTVQLTGYDSL-PPALANHGEINQLL 468
M F +G+TV +G + PALA + LL
Sbjct: 409 MSFQRQGRTVCWSGVPTPGAPALAATTDGEPLL 441
>gi|77554308|gb|ABA97104.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1412
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 160/372 (43%), Gaps = 63/372 (16%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
+G+ P CE+Y + + + + +A + G+A W + + +TW +F
Sbjct: 122 FNGDRPQLWKSNCEEYFEVYGVHPKNWVRVAGLNFTGNAAFWLQSVRSKLVGVTWQEFSD 181
Query: 145 ALVTQF----------------------GTFEDGDAVGTQ------NLPESFFISCFLSG 176
+ +F E D + Q +L ++F++ F+ G
Sbjct: 182 QVCLRFTKDRQEVLIRQWFHIVQDSSVSDYVEKFDGIMHQLLAYDSSLSLNYFVTKFVEG 241
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITK 236
LR+DI+ GV M KP L LA QEE S+ P++ R P+L S
Sbjct: 242 LRKDIRSGVLMQKPQDLDTACSLAFLQEEILEGSH------PAVYRKPEPILLSK----- 290
Query: 237 TGGSSQPSLLGP----PPPGLPPFRRLSVAEQTE----------RRAKGLCFNCDEQFKP 282
+ QP+ + P P + R+ S Q+ +RAKGLCF C E +
Sbjct: 291 -NFARQPAPVSPMSNHPQGSVLEDRKQSEFSQSRSDKFSALKSYKRAKGLCFTCGECWSR 349
Query: 283 GHRC-KAPQLLLLD---ADIEDKDEQAEALEELPETLE-----VSLKALTGATPQNTMRL 333
H+C + QL ++ A ++D E+++ + E E +S +A+TG + RL
Sbjct: 350 EHKCGSSVQLHVVQELLAALQDDQLNHESVDTVSEPAEPVLMAISYQAVTGTESLTSFRL 409
Query: 334 KGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVP 393
G ++ + + +L+DS S+H F++ ++A++ V VADGGVIS S
Sbjct: 410 NGWVQGYELLMLVDSGSSHSFIDITVAQKLQGIQCLQHAASVKVADGGVISCSQYIPGCD 469
Query: 394 VNSQGFQFHLDF 405
+QG F DF
Sbjct: 470 WWTQGQIFKTDF 481
>gi|357130317|ref|XP_003566796.1| PREDICTED: retrotransposon-derived protein PEG10-like [Brachypodium
distachyon]
Length = 717
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 168/381 (44%), Gaps = 52/381 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
++DF G + + I +C + + + ++ +L G A WY ++T +
Sbjct: 151 KMDFPRFDGTDASIWIDQCNTFFTMYQIPPGFRVAATTMYLRGSAAHWYQAFKRTEFDTN 210
Query: 139 WAQFK-RALVT------------QFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGV 185
Q K R L+ QF + +++ +S F+ GL++++K V
Sbjct: 211 TQQDKIRELLLLRQTGSVAEYRHQFDLLVYQICLYDESMGGLMLVSQFILGLKDELKPAV 270
Query: 186 QMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSL 245
++ P + + A QE ++R S +P + G ++
Sbjct: 271 EVQLPTIVAEAALYASVQEGV-------------LARLSALQSARAPRVEGYGRTT---- 313
Query: 246 LGPPPPGLPPFRR--LSVAEQTE--RRAKGLCFNCDEQFKPGHRCK---APQLL------ 292
+GP F + + A+Q + RRA GLC+ C E+F PGH+C APQ+
Sbjct: 314 IGPK------FDKGEMWKAKQLKDFRRANGLCYKCGEKFIPGHQCAIVPAPQIKAVQVVE 367
Query: 293 LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTH 352
LL ++ D Q E +++ + + +SL A++GA +T+RL+ + + +LIDS S+H
Sbjct: 368 LLSDEVLDAIAQGEDMDDETD-MHLSLNAVSGADHPDTIRLRCLVGNKVLIMLIDSGSSH 426
Query: 353 IFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSG 412
F++S L V V VA+G V+ K S + Q F DF ++ +
Sbjct: 427 SFIDSHLLTSLNYSVVPIPLTAVKVANGAVLQCDSKVSGLTWWVQHHTFQYDFRVVQLGE 486
Query: 413 CDIVLGAEWLRSLGAIL--WD 431
D +LG +WL+ GA+ WD
Sbjct: 487 YDAILGMDWLKQWGAMACHWD 507
>gi|24414261|gb|AAN59764.1| Putative retroelement [Oryza sativa Japonica Group]
gi|108706657|gb|ABF94452.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1021
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 165/411 (40%), Gaps = 56/411 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P RCE Y + + +A + G A W + +
Sbjct: 232 KLDFPKFDGTDPEDWRMRCEHYFDVNNTFPGLWVRIATIYFSGRAASWLRSTKAHVRFPI 291
Query: 139 WAQFKRAL------------------VTQFGT----FEDGDAVGTQNLPES------FFI 170
W F A+ + Q G+ +E D + Q L +
Sbjct: 292 WENFCVAMSNKFDRDQHEVLIRQMDSIKQIGSVWEYYEKFDELMNQLLVYDPLLNIRYLT 351
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
F +GLR +I+ V + +P L +A QEE S ++ S
Sbjct: 352 HRFTAGLRREIRNAVLLQRPKDLETALAIASLQEEVMLES----------------VIGS 395
Query: 231 SPTITKTGGSSQP--SLLGPPPPGLPPFRRLSV------AEQTERRAKGLCFNCDE-QFK 281
+P T G +P + P LPP R + V A+ + N D+
Sbjct: 396 NPKRTDNGLQVRPNPAFKSALPLPLPPTRGMQVGMVSRTADHKGNDNSKMVNNADKISVL 455
Query: 282 PGHRCKAPQLLLLDADIEDKDEQAEALEEL--PETLEVSLKALTGATPQNTMRLKGNLKK 339
H + L DI D+ EQ E LEE P+ + +S++A+ G+ MR+ G ++
Sbjct: 456 KLHAVQELINTLGCDDIPDQ-EQLEQLEEYDNPDLIAISVQAIHGSETVGCMRMLGYIQG 514
Query: 340 HGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGF 399
V IL+DS ST FL+S +A++ +V VA+G +++ + +QG+
Sbjct: 515 KEVLILVDSGSTTSFLSSQIAQKLTGVTPLVAATRVKVANGTILNCVASVPNCDWMTQGW 574
Query: 400 QFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
F F +L + D++LG +WL + D+ + T+ TW+ Q+V L G
Sbjct: 575 VFCTTFKVLDLGSYDMILGMDWLMDHSPMQVDWIQKTLTITWRQQSVTLQG 625
>gi|147811718|emb|CAN77256.1| hypothetical protein VITISV_008352 [Vitis vinifera]
Length = 1365
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 132/317 (41%), Gaps = 67/317 (21%)
Query: 79 RLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNM 137
+LDF G E+PT I R EQ+ + D + LA HL+ DA W
Sbjct: 408 KLDFPRYDGSEDPTLWICRAEQFFEFQGISLEDQVKLAAYHLEKDAQLW----------- 456
Query: 138 TWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTF 197
L+ + T D CF+S L++ ++
Sbjct: 457 --------LLARANTLTDKQEA-----------ECFISRLKDGLR--------------- 482
Query: 198 ELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFR 257
R P P+ S N T T +G P + P R
Sbjct: 483 -----------ADEVRRPTNPTFSSSVCNSNNQWNTSTXSGAKD------TNPERILPIR 525
Query: 258 RLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
+LS E RR + LC+NCDE++ GH+CK L ++E+++E++ E + ET +
Sbjct: 526 KLSPTELQRRRQQRLCYNCDEKYTMGHKCKK----LFFIELEEENEESIEEEYVEETPTI 581
Query: 318 SLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTV 377
SL AL G TM++ + K +TILIDS STH FL+ AK G + F V V
Sbjct: 582 SLHALAGVQSPQTMQIHSQIGKTPLTILIDSGSTHNFLHHKFAKIIGLKSERSCLFSVVV 641
Query: 378 ADGGVISSSGKCSHVPV 394
A+G +SS G+C+ V +
Sbjct: 642 ANGERLSSLGRCNGVKL 658
>gi|255576772|ref|XP_002529273.1| conserved hypothetical protein [Ricinus communis]
gi|223531262|gb|EEF33105.1| conserved hypothetical protein [Ricinus communis]
Length = 278
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 41/277 (14%)
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE-------YAAVSNRRIPPRP 218
E++F S F+SGL ++++ +++ K +L Q F+ ++ QE+ + ++ R +P
Sbjct: 4 ETYFFSSFISGLNDELRPVIKIFKFNNLYQAFKQSKLQEQPIDALMKWHITTSTRYTIKP 63
Query: 219 SMSRPSPPL---LNSSPTITKTGGSSQPSLLGPPPPGLPPFRR---LSVAE-----QTER 267
S S NS ++ G Q P G+ + S+ E Q ER
Sbjct: 64 QNSCSSSTFQKTFNSQSFGNRSLG--QTISTQGPAYGITKVMKPIGTSIGENGKAPQVER 121
Query: 268 RAKGLCFNCDEQFKPGHRCKAPQLLLLDAD------------IEDKDEQAEALEELPETL 315
R C+ C ++ P H+CK LL + + IEDK + E+
Sbjct: 122 RCNNTCYRCGNKYYPRHQCKNKALLYMGGEEEECAEDEYTSFIEDK-----GVGEV---- 172
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
E+S+ A +G+ NT+++K ++ + IL+DS STH FL+ +AK G + +
Sbjct: 173 ELSMHATSGSASSNTLKIKSSIGGKTIMILVDSRSTHSFLDVKVAKDVGSHIVKAPPLNI 232
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSG 412
TVA+ + S G+C + + QG F + +L + G
Sbjct: 233 TVANSLCMWSRGRCEKLTWDMQGHHFCFNIRVLELGG 269
>gi|449526327|ref|XP_004170165.1| PREDICTED: uncharacterized protein LOC101232744 [Cucumis sativus]
Length = 426
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 12/186 (6%)
Query: 281 KPGHRCKAPQL------LLLDADIE-DKDEQAE--ALE---ELPETLEVSLKALTGATPQ 328
K GH+CKA +L ++ DIE D+ EQ+E A+E E+ +E+ + ++ G T
Sbjct: 92 KEGHKCKAKELRELWMFVVKTDDIEEDEYEQSELKAMELQGEIGGVVELCINSMVGLTNL 151
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
TM+++G ++ V +L+D +TH F++ L P T+ + + G I G
Sbjct: 152 GTMKIRGVIEGKEVIVLVDCGATHNFISDKLVMTLHIPTKDTSNYGEILGSGTTIKGKGV 211
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQL 448
C V ++ G+ DF L + G D++LG +WL SLG D+ L M F + V +
Sbjct: 212 CEQVKLSLNGWTVTADFLPLELGGVDMILGMQWLYSLGVTEVDWKNLVMSFVHNNKKVVI 271
Query: 449 TGYDSL 454
G SL
Sbjct: 272 IGDPSL 277
>gi|147863509|emb|CAN79783.1| hypothetical protein VITISV_002632 [Vitis vinifera]
Length = 166
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 259 LSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPE---TL 315
++ E E R KGLCF +++F GH CK ++ + D DE+ E + E+ +
Sbjct: 1 MTTKELNEMRRKGLCFRYNDKFGLGHVCKRLFMIRATCNDSDDDEKMEIVSEVHQEDVKP 60
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
E+SL A+ G NTMRL G+L H + +LIDS STH F++ + ++ G + + +V
Sbjct: 61 EISLHAIAGLKAPNTMRLAGSLFFHPMEVLIDSWSTHNFISVLVVERVGLNLKQDRKMEV 120
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV 410
VA G + S G+CS+V + Q ++FF+LP+
Sbjct: 121 MVASGEKLVSPGRCSNVQLKLQKVPIAVEFFILPL 155
>gi|224158034|ref|XP_002337925.1| predicted protein [Populus trichocarpa]
gi|222870020|gb|EEF07151.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 150/333 (45%), Gaps = 54/333 (16%)
Query: 4 KELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPE 63
K+LEERV+ L +F E + QQ+ ++ L + I R++ + + + P
Sbjct: 15 KKLEERVQILQQEFQESL--ADQQTKWQEQFDLGSTSKGILQTPTRDSLEGMLSREKGPA 72
Query: 64 PAGRIGGALVQPRHI------RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIG 117
+ G Q R + R+D G+NP + RC ++ +L + LA
Sbjct: 73 KGDQTYGQ-EQQRMVHNVVLPRMDLTTFWGDNPRGWLRRCNKFFKLNTTPFQRWVELASL 131
Query: 118 HLDGDAVPWYH-WLEQTMGNMTWAQFKRALVTQFGT-----------FEDGDA------- 158
+L+G A W+ ++ G + +F RA+ ++FG ++GD
Sbjct: 132 YLEGKAEIWFEGYMCGVEGVVDEEEFSRAICSRFGNRTDIVEEFNKLMQEGDVDEYVKRF 191
Query: 159 ------VGTQN--LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVS 210
+ + N LPES++IS F+SGL+EDIK +++LKP +L+ F+ A++QEE V
Sbjct: 192 EELKSLMHSLNSLLPESYYISSFISGLKEDIKPMLKILKPVTLMIAFDQAKWQEESNNVL 251
Query: 211 NR--RIPPRP-SMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTER 267
R + PRP ++ + P+ N Q ++ +R
Sbjct: 252 ARDNKFMPRPAAVVQMGIPIGNRQTNYVNDNQQKQ---------------KVPKTMHEQR 296
Query: 268 RAKGLCFNCDEQFKPGHRCKAPQLLLLDADIED 300
R G CF C ++F PGH+C +L +++ + E+
Sbjct: 297 RRLGQCFKCGDKFMPGHKCNVKELHMIEGNEEE 329
>gi|77557165|gb|ABA99961.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1619
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 171/428 (39%), Gaps = 56/428 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G + +CE Y + + +A + G A W +
Sbjct: 168 KLDFPKFDGSDSQEWRMKCEHYFDVNNTFPGLWVRIATIYFLGRAASWLRSSRAHLRFPM 227
Query: 139 WAQFKRALVTQF------------------GT----FEDGDAVGTQ------NLPESFFI 170
W F A+ +F GT +E D + Q L +
Sbjct: 228 WEDFCAAVSAKFDRDQHENLIRQMDSIKQNGTVWEFYERFDELMNQLLVYDPTLSSKYLT 287
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYA---------------AVSNRRIP 215
F GLR +I+ V + +P L +A QEE S+ +I
Sbjct: 288 HRFTKGLRREIRNAVLLQRPKDLESALAVALLQEEVMENSPPTTVREFKKSDGSSSLKIN 347
Query: 216 PRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFN 275
+ + P PP ++ + S P L ++S A ++ RRA+GLC+
Sbjct: 348 GKGAWPLPLPPGKGGGVPVSNRADERRSSDTVRSPTSLT--EKVS-ALKSYRRAQGLCYV 404
Query: 276 CDEQFKPGHRCKAP-QL--------LLLDADIEDKDEQAEALEELP-ETLEVSLKALTGA 325
C E++ P H+C + QL L L+ D + E A L E + +SL+A+ G
Sbjct: 405 CAEKWSPNHKCASSVQLNVVQELLCLFLEEDSHVESENAGQNGSLTRELMAISLQAVQGT 464
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
P TMR+ G L+ + +L+DS S+ F++S +A+ + + V VA+G +
Sbjct: 465 EPDGTMRMLGQLQGKELLVLVDSGSSVSFISSQIAEGLTGIQPLSRRLSVRVANGETLCC 524
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQT 445
+ QG +F +LP++ D++LG +WL + D+S T+ + +G T
Sbjct: 525 GAIIPNCEWQVQGHKFQTTLRVLPITSYDMILGMDWLMKHSPMSVDWSLKTITLSLQGTT 584
Query: 446 VQLTGYDS 453
V L G S
Sbjct: 585 VTLQGVHS 592
>gi|449504808|ref|XP_004162300.1| PREDICTED: uncharacterized protein LOC101229007 [Cucumis sativus]
Length = 746
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 44/283 (15%)
Query: 162 QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR-IPPRPSM 220
++LPE F+SGL+ I+ + +P L Q +A+ V NR I ++
Sbjct: 131 KDLPEKVVEETFMSGLKPWIQAEMDFCEPKGLSQMMRIAQ------KVENREDIRREANL 184
Query: 221 SRPSPPLLNSSPTITKT-----GGSSQPSL------------LGPPPPGLPPFRRLSVAE 263
S LNSS TK G+++ S+ P +RLS AE
Sbjct: 185 PGYSGGKLNSSENSTKVNTTVNAGNNKGSMNWSMRTITLRETSNEEARKERPMKRLSDAE 244
Query: 264 QTERRAKGLCFNCDEQFKPGHRCKAPQ------LLLLDAD-----IEDKDEQAEALEELP 312
RR KGLCF C+E++ H+CKA + L+++ + IE+ + + E L +
Sbjct: 245 FQSRREKGLCFRCNEKYSHDHKCKAKEYRELRMLVVMGENVEYEIIEEDNTEQEELNTIE 304
Query: 313 ET------LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCP 366
T +E+S+ ++ G + TM++KG ++ V +LID +TH F++ L ++
Sbjct: 305 VTGDEQTVVELSINSVVGLSNPGTMKVKGKIQGREVIVLIDCGATHNFISEGLVEELQIN 364
Query: 367 VTTTTQFQVTVADGGVISSSGKCSHVPV--NSQGF-QFHLDFF 406
T+ + V + G I G C + + N G +F DF+
Sbjct: 365 TKITSNYGVILGSGTAIKGKGICEAIEIWCNRSGLEEFDSDFY 407
>gi|449474333|ref|XP_004154142.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 566
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 43/216 (19%)
Query: 254 PPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ----LLLLDADIEDKDEQAEALE 309
PP +RLS E R KGLCF C+E++ PGHRCK + +LL+ + ED + +A +
Sbjct: 100 PPIKRLSDTEFRARLDKGLCFKCNEKYSPGHRCKGREKRELMLLILNEEEDHKREEDAED 159
Query: 310 ELPETLE-----------VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSS 358
E E +E + L+ +TG T + T +LKG+L
Sbjct: 160 EASEVIELNHLELNMDNPIELRLITGVTSKRTKKLKGHL--------------------- 198
Query: 359 LAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLG 418
+ T+F VT+ +G SG C V V + DF + + D+VLG
Sbjct: 199 -------SIDLGTRFGVTIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLG 251
Query: 419 AEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
+WL S G + + LTM F KG+ + L G SL
Sbjct: 252 MQWLDSTGTMKVHWPSLTMTFWTKGRRIILKGDPSL 287
>gi|356551381|ref|XP_003544054.1| PREDICTED: uncharacterized protein LOC100808652 [Glycine max]
Length = 463
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 161/390 (41%), Gaps = 91/390 (23%)
Query: 84 VLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFK 143
+ G++ + I R E Y + + + LA ++G + W++ L +T ++W + K
Sbjct: 61 LFEGDDLVAWITRVEIYFDVQNTTDKMRVKLARLSMEGSTIHWFNLLMETEDELSWEKLK 120
Query: 144 RALVTQFGT------FEDGDAVGTQN------------------LPESFFISCFLSGLRE 179
RAL+ ++G FE+ + + LPE ++ F+SGL+
Sbjct: 121 RALIARYGGRRLENPFEELSTIRQKGSVEEFVEAFELLSSQVGRLPEEQYLGYFMSGLKP 180
Query: 180 DIKIGVQMLKPASLLQTFELAR----------------------------------FQEE 205
I+ V+ L P + +Q +A+ FQ+
Sbjct: 181 QIRRRVRTLNPLNRMQMMRIAKDVEEELKEEDEDGERSDSKKGVQDRMGRNNWAGSFQKS 240
Query: 206 YAAVSNRRIPPRPSMSRPSPPLLNSSPT-ITKTGGSSQPSLLGPPPPG------------ 252
+ + N R P R SP L S+PT T + GS+ S L G
Sbjct: 241 RSGL-NPRDPIR------SPNLGWSNPTQKTGSSGSNTISTLSLASTGRKGETDTRTGVS 293
Query: 253 --LPPFRRLSVAEQTERRAKGLCFNCDEQFKPG-HRC--KAPQLLLLDADIEDKDE-QAE 306
R + E ERRAKGLCF C ++ P H+C +A ++L+L DE +
Sbjct: 294 EKWKGVRSIRNNEMAERRAKGLCFKCGGKYHPTLHKCPERALRVLILGEGEALNDEGEIM 353
Query: 307 ALEEL----PETLEV---SLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
A+E + E +EV S+ L TM+++G ++ V +LIDS ++H F++ +
Sbjct: 354 AMEAVQPDSEEEIEVECKSMGVLGSMGEHRTMKIEGKIENVDVLVLIDSGASHNFISPQV 413
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
G +T + + + DG + S G C
Sbjct: 414 TTALGLTITASVAKHIKLGDGHKVVSEGVC 443
>gi|449464816|ref|XP_004150125.1| PREDICTED: uncharacterized protein LOC101220785 [Cucumis sativus]
Length = 2047
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 122/293 (41%), Gaps = 21/293 (7%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPP-----RP 218
+ E + F +GL I++ V ++ L R EE ++ P +P
Sbjct: 577 MAEGVLVGTFTNGLDPIIRMEVFAIRAVGLEDMMYATRLAEEKLEMAWASQGPYAKDGKP 636
Query: 219 SMSRPSPPLLNSSPTI----------TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERR 268
+ + L NS+ I + T +SQ G FRR + E R
Sbjct: 637 AQKQEEKLLENSTTKIVTLADRVHAHSSTPITSQVVASGSGVRHENNFRRWTDFELQARC 696
Query: 269 AKGLCFNCDEQFKPGHRCKAPQL--LLLDADIEDKD----EQAEALEELPETLEVSLKAL 322
KGLC+ CDE F G RCK +L L+ D+ED E A+ E+ +E+SL ++
Sbjct: 697 DKGLCYRCDEPFSKGQRCKNKELRLYLVANDLEDTKMEDVENENAMVEVSPVVELSLNSV 756
Query: 323 TGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV 382
G T +T ++KG ++ + I++D +TH F++ ++ P+ TT + V +
Sbjct: 757 VGLTAPSTFKVKGTVEDREIIIMVDCGATHNFISLMRVEKLKLPMAETTNYDVIMGSRKA 816
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
+ G C + V DF L + D+VL W L DF +
Sbjct: 817 VQGRGMCKGITVGLPVLTIIEDFLPLELGNLDMVLVKTWQLDDQGFLVDFRAM 869
>gi|284434698|gb|ADB85398.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1348
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 33/277 (11%)
Query: 165 PESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPS 224
PE+FF+ CF++GLR+DIK ++ LKP L + + +A+ E+ A RR
Sbjct: 67 PEAFFVKCFINGLRQDIKHYLKPLKPQVLCEAYWMAKDMEKGAGAVARR----------- 115
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTER-RAKGLCFNCDEQFKPG 283
++SS T+ GG + +L + F++ V + G+C C +++ G
Sbjct: 116 --GMSSSVVNTQKGGYN-ANLAKNRVQSVQNFQKKEVGNKPNTPFIPGICRYCGDKWFLG 172
Query: 284 HRCKAPQL--LLLDADIEDKDEQAEALEELPET----------------LEVSLKALTGA 325
HRCK Q L++ E E ++ P+T ++VS +A+ G
Sbjct: 173 HRCKQYQQVNLMVSETEETAHPNVETEDDPPDTNECTVEETDPPEQLMHMQVSSQAVQGY 232
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ T ++ + L+DS STH F++ A + C + +VTVA GG I +
Sbjct: 233 SRFTTYTVEVKIGGRRGIALLDSGSTHTFMDLRFATKTTCRIMCNNLMKVTVAGGGSILT 292
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + G F F +L + D+VLG +W+
Sbjct: 293 GSHVPEVKYSINGQVFCNSFKILKLKNYDMVLGCDWM 329
>gi|90399077|emb|CAJ86299.1| H0124B04.16 [Oryza sativa Indica Group]
Length = 1265
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 189/461 (40%), Gaps = 72/461 (15%)
Query: 63 EPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD 122
E +G G R +LDF G +P + RCE Y + + +A + G
Sbjct: 172 EESGGSEGRGYNHRLPKLDFPQFDGSDPQNWRLRCEHYFGVYGTHPDLWVRVATIYFIGR 231
Query: 123 AVPWY-----HWLEQTMG---NMTWAQFKR----ALVTQFG----------TFEDGDAVG 160
A W H L + G +M +F R LV Q +E D +
Sbjct: 232 AASWLRSSRAHLLCGSWGVFCDMVDRKFDRNRHLQLVRQIDQLKQSGSVNEYYERFDDLW 291
Query: 161 TQNL---PESFFISC---FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI 214
+Q L P +SC F GLR DIK V M P L LA QEE +
Sbjct: 292 SQLLVYDPTLSTMSCVHRFTEGLRSDIKNAVLMHFPQDLETALALAILQEELGEAGGSLV 351
Query: 215 PPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCF 274
S+ L G + G P LPP + + + ++RA +
Sbjct: 352 ------SKDGKKL-----------GDHVARIKGAYPLPLPPPKFVHAGKGDDKRAAEVP- 393
Query: 275 NCDEQFKPGHRCKAPQLL--------LLDADIEDKDEQAEALEELPETLEVSLKALTGAT 326
+C P L +L AD+ D ++ A++ L + +SL+A+ G
Sbjct: 394 ----------KCSGPVQLHAVQELFSVLAADVSDGEQDADSTSSL---MAISLQAIQGTV 440
Query: 327 PQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
+T+RL+G+++ V IL+DS S+ FL+S + + T QV VA+G V+ +
Sbjct: 441 SAHTLRLQGSIQGFDVLILVDSGSSCSFLSSVVLPHLTGVKSLLTPIQVKVANGTVLYCT 500
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+ QG QF +F LLP+ D++LG +WL + ++ T+QF ++V
Sbjct: 501 SELPAAKWEVQGHQFSTNFKLLPLDNYDMILGMDWLEKYSPMDINWQAKTIQFCLHDKSV 560
Query: 447 QLTGYDSLPPAL--ANHGEINQLLLQEKQGIFFQIMAITTS 485
+L G + P L + I+QL L QG ++ +T S
Sbjct: 561 ELKG---VVPELDKCDLVSIHQLQLLHNQGAVESLVQLTAS 598
>gi|3810596|gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 945
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 157/379 (41%), Gaps = 53/379 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G + T + + +QY + HLDG A W+
Sbjct: 105 KLDFPRFHGGDLTKWLSKAKQYFEYHEGPVEQAVRFTTFHLDGVANGWWQ---------- 154
Query: 139 WAQFKR-ALVTQFGTFED--GDAVGTQN----LPESFFISCFLSGLREDIKIGVQMLKPA 191
A +R A + Q G+ + + QN + + F++GL I G++M +P
Sbjct: 155 -ATLRRSATIGQTGSLSEYQHEFEWLQNKVYGWTQEVLVGAFMNGLYYSISNGIRMFQPR 213
Query: 192 SLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPP 251
SL + L + + S R R + L++ ++T + + S
Sbjct: 214 SLREVINL---RVGWKGKSKDRRRKRATHH------LHAVLSLTVWWCAKRQS------- 257
Query: 252 GLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEEL 311
+R SV + ER+ G ++ + D E +E++ E
Sbjct: 258 --NRRQRDSVRKNYERK--------------GVWAYVSAVMKGENDDEAVEEESTEAEGK 301
Query: 312 PETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT 371
PE ++L AL G +T+R++ + ++ + LI+S STH F+ + TTT
Sbjct: 302 PE---ITLYALEGVDTTSTIRVRATIHRNRLIALINSGSTHNFIGEKAVRGMNLKATTTK 358
Query: 372 QFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWD 431
F V V +G + + +PV G F + + LP+ G D+ +G +WL +LG L +
Sbjct: 359 PFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLYALPLMGLDLAMGVQWLSTLGPTLCN 418
Query: 432 FSKLTMQFTWKGQTVQLTG 450
+ + T+QF W G V+L G
Sbjct: 419 WKEQTLQFHWAGDEVRLMG 437
>gi|21397270|gb|AAM51834.1|AC105730_8 Putative plant disease resistance polyprotein [Oryza sativa
Japonica Group]
gi|108706267|gb|ABF94062.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 624
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 17/218 (7%)
Query: 267 RRAKGLCFNCDEQFKPGHRC------KAPQLL-LLDADIEDKDEQAEALEELPETLEVSL 319
RRA+GLCF C +++ P HRC KA QL +L DI D AE ++ E +SL
Sbjct: 129 RRAQGLCFKCGDKYTPEHRCAVGGQIKAMQLEEVLTDDILDVVIAAEQSDD-EEDCHISL 187
Query: 320 KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
ALTGA +RL+ + + +L+DS S+H F++ + A+ G P+ V VA+
Sbjct: 188 NALTGAYLLTAIRLRALVHSKVLLLLVDSGSSHNFIDYNFAQMLGLPLKPIPSTLVKVAN 247
Query: 380 GGVISSSGKCSHVPVN----SQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
G + C +V QG F D ++ + G D +LG +WL G + ++
Sbjct: 248 GDCLP----CQYVVPGFFWWIQGHTFTYDMRVVTLGGHDAILGMDWLEQWGEMSCHWANK 303
Query: 436 TMQFTWKGQTVQLTGY-DSLPPALANHGEINQLLLQEK 472
T++F ++G + L G D+ P+ + QLL K
Sbjct: 304 TLKFQYQGSWISLQGVQDAAVPSEIAAVTLPQLLKWHK 341
>gi|242065034|ref|XP_002453806.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
gi|241933637|gb|EES06782.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
Length = 1414
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+ G +TM+++ ++ L+DS STH F+ A++ G V + VA+G
Sbjct: 287 VAGVPLADTMQVRVSVGTATFVALLDSGSTHNFIAEEAARRTGLRVQPRARMTAMVANGE 346
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
I G H PV F +D F++P++G DIVLG +W+ +LG I+WDF+ ++ FT+
Sbjct: 347 KIPCPGVIRHAPVTIDNTTFAIDLFVMPLAGYDIVLGTQWMATLGPIVWDFAARSLSFTY 406
Query: 442 KGQT-----VQLTGYDSLPPALANHGEINQLLLQEKQGIF 476
+G+ V TG SL A A+ + LL IF
Sbjct: 407 QGRAFCWAGVPSTGAPSLRAATASSASLLDGLLAAYDDIF 446
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +DF +G+ +P + +C+ Y R ++E + + L +L+ DA W+ ++
Sbjct: 23 PRFASMDFPKFAGKSDPVGFVNQCDSYFRRERIMEEEKVWLVSRNLEDDARVWFLQVQHA 82
Query: 134 MGNMTWAQFKRALVTQF 150
G W +F L +F
Sbjct: 83 EGTPAWRRFTELLHLRF 99
>gi|110289425|gb|AAP54660.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 768
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 151/360 (41%), Gaps = 61/360 (16%)
Query: 66 GRIGGALVQPRHI---RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD 122
GR G + RH ++DF G + + CE Y + + + +S + H+ G+
Sbjct: 105 GRGFGDGIYRRHQPLPKMDFPRFDGSDVRIWLNMCETYFDMYQITQNFKVSAVVLHMSGN 164
Query: 123 AVPWYHWLEQTMGNMTWAQFKRALVTQF-GTFEDGDAVGTQNLPES-------------- 167
A WYH + +W QF+ A+ T+F G E L ++
Sbjct: 165 AAQWYHSYKLVNEVNSWDQFRMAVATEFEGVVEREKMSALDTLTQTGTVTEYKQQFDYLV 224
Query: 168 -------------FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI 214
++ F++GL E+I+ V + P ++ Q+ +A QE A
Sbjct: 225 YQIRVFDPSVGGKMLVTRFMNGLTEEIRAAVVVQLPDTVQQSSAIALMQESVLA------ 278
Query: 215 PPRPSMSRPSPPLLNSSPTI--TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTE--RRAK 270
SR + L + K+ SS + PG L A+Q + RRA+
Sbjct: 279 ------SRATKALKGKFVKLPQYKSDVSSDTT------PGQVDKGDLWKAKQLKDYRRAQ 326
Query: 271 GLCFNCDEQFKPGHRC------KAPQLL-LLDADIEDKDEQAEALEELPETLEVSLKALT 323
GLCF C +++ P HRC KA QL +L DI D AE ++ E +SL ALT
Sbjct: 327 GLCFKCGDKYTPEHRCAVGGQIKAMQLEEVLTDDILDAVIAAEQSDD-EEDCHISLNALT 385
Query: 324 GATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI 383
GA + L+ + + +L+D S+H F++ + A+ G P+ V VA+G +
Sbjct: 386 GAHLPTAILLRALVHSKVLLLLVDYGSSHSFIDYNFAQMLGLPLKPIPSTLVKVANGDCL 445
>gi|115487072|ref|NP_001066023.1| Os12g0121200 [Oryza sativa Japonica Group]
gi|113648530|dbj|BAF29042.1| Os12g0121200, partial [Oryza sativa Japonica Group]
Length = 461
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%)
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
T+++ L + L+DS STH F+N ++A Q G P+ V VA+G + S G+C
Sbjct: 1 TIKVWARLGSQELVALLDSGSTHNFINDAIAHQAGVPLQRRPGLSVAVANGDRVPSPGRC 60
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
V+ +F +DF+ LP+ G DIVLGA+WL +LG LWDFS+ ++ F V T
Sbjct: 61 PPQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLGPTLWDFSRQSLAFGPAHDRVTWT 120
Query: 450 GYD 452
D
Sbjct: 121 SID 123
>gi|449455495|ref|XP_004145488.1| PREDICTED: uncharacterized protein LOC101209704 [Cucumis sativus]
Length = 1503
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/498 (19%), Positives = 179/498 (35%), Gaps = 115/498 (23%)
Query: 16 QFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQ--------------PLQINNQQ 61
Q E+VE ++ L+E++L + R ++ N L++ +
Sbjct: 313 QIEERVEGTEKEIMSLKEMMLEMKKSMDRMTDELRENHGAKKKEEAGTTDDIRLKLKGKL 372
Query: 62 PEPAGRI---GGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGH 118
E + G + + ++ +L+ + +G NP S +R E + + L E + + +A+
Sbjct: 373 EEAGTTVESGGSSADRSKYKKLEMPLFTGVNPESWAYRAEHFFDINDLPEAEKVKVAVVS 432
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDG--DAVGTQ-------------- 162
+ V W+ W + +W K + F F D ++G +
Sbjct: 433 FGQEEVDWFRWSNRRKRVESWEDLKERM---FDFFNDTGQQSLGARLIRIKQEVSYSEYV 489
Query: 163 -----------NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSN 211
++ ES + FL+GL ++ V P +L + + A+ ++
Sbjct: 490 KKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEAQL------AND 543
Query: 212 RRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPS---------------LLGPPPPGLPPF 256
R I + +M + +K G ++ + L P
Sbjct: 544 RNIALKLAMEELDIVEPKRNENSSKFQGKNEKTESKKTEFVMKQVTIPLKNDYQKKDLPI 603
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLE 316
+RLS E R KGLCF C+E++ PGHRC
Sbjct: 604 KRLSDTEFRARLDKGLCFRCNEKYAPGHRC------------------------------ 633
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
KG K+ + ++++ H + + + T+F VT
Sbjct: 634 -----------------KGREKRELMLLILNEEEDHKREEDTEDEASELSIDPGTRFGVT 676
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
+ +G SG C V V + DF + + D+VLG +WL S G + + LT
Sbjct: 677 IGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMKVHWPSLT 736
Query: 437 MQFTWKGQTVQLTGYDSL 454
M F KG+ + L G SL
Sbjct: 737 MTFWMKGRRIILKGDPSL 754
>gi|77551464|gb|ABA94261.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1369
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 262 AEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKA 321
A + +RRA+GLC+ C E++ P H+C Q A++EL + +S+ A
Sbjct: 309 ALKAQRRAQGLCYLCAEKWSPTHKCA-------------NTVQLHAVQELFTIMAISVHA 355
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+ G+ + +MR+ G ++ + IL+DS ST F++ LA T+ QV VADG
Sbjct: 356 MRGSEHRGSMRMLGQIQGKEILILVDSGSTASFISKKLAAGLVGVQGLPTKVQVKVADGA 415
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTM 437
V+ + SQG F DF +L + D++LG +WL + D+S T+
Sbjct: 416 VLHCQSVIQNCEWVSQGHMFCTDFKVLALGNYDVILGMDWLMQHSPMTVDWSTRTL 471
>gi|224154118|ref|XP_002337435.1| predicted protein [Populus trichocarpa]
gi|222839253|gb|EEE77604.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 61/251 (24%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYH-WLEQTMGNM 137
R+D G+NP + RC+++ +L + LA +L+G A W+ ++ G +
Sbjct: 54 RMDLTTFWGDNPRGWLRRCKKFFKLNTTPFQRWVELASLYLEGKAEIWFEGYMCGVEGVV 113
Query: 138 TWAQFKRALVTQFGT-----------FEDGDA-------------VGTQN--LPESFFIS 171
W +F A+ +FG ++GD + + N LPES++IS
Sbjct: 114 DWEKFSGAICNRFGNRTAIVEEFNKLMQEGDVDEYVERFEELKSLMHSLNSLLPESYYIS 173
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAV--SNRRIPPRPSMSRPSPPLLN 229
F+SGL+EDIK +++LKP +L+ F+ A++QEE V N + PRP+ L+
Sbjct: 174 SFISGLKEDIKPMLKILKPVTLMIAFDQAKWQEESNNVLARNNKFMPRPAAVVQMGILIE 233
Query: 230 SSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
+ +RR G CF C ++F PGH+C
Sbjct: 234 TM--------------------------------HEQRRRLGQCFKCGDKFMPGHKCNVK 261
Query: 290 QLLLLDADIED 300
+L +++ + E+
Sbjct: 262 ELHMIEGNEEE 272
>gi|215707240|dbj|BAG93700.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 535
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 131/308 (42%), Gaps = 49/308 (15%)
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPL 227
+ F+ GLR +I+ V + +P +L +A QEE S+ S P+
Sbjct: 216 YLTHRFIDGLRREIRNAVLLQRPKNLESALAVASLQEEVLESSD------------STPV 263
Query: 228 LNS----SPTITKTGGSSQPSLLGPPPPGL---------------PPFRRLSVAEQ---- 264
S KTGG+ + + P PPG +RLS + +
Sbjct: 264 KEGKKFESSGQHKTGGNFKGAFPLPLPPGRHLGVIQSARVDEKKEGEIKRLSASSEKVSA 323
Query: 265 --TERRAKGLCFNCDEQFKPGHRCKAPQLL-----LLDADIEDKDE-----QAEALEELP 312
+RRA+GLC+ C E++ P H+C L L E DE + L +
Sbjct: 324 LKAQRRAQGLCYICAEKWSPTHKCANTVQLHAVQELFSVLHEACDEAVCNPENSVLSDSQ 383
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ +S+ A+ G+ MR+ G ++ V IL+DS ST F+++ +A+ T
Sbjct: 384 VLMAISVHAVQGSEASGCMRMLGQIQGKDVFILVDSGSTASFISARVAEGLSELSQIATN 443
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL--RSLGAILW 430
QV VADG + + ++QG +F +LP+ D++LG +WL S + W
Sbjct: 444 LQVKVADGATLHCQSEIPACEWSTQGQKFCTTLKILPLGNYDMILGMDWLMQHSPMTVNW 503
Query: 431 DFSKLTMQ 438
LT++
Sbjct: 504 VTKSLTIE 511
>gi|449502909|ref|XP_004161777.1| PREDICTED: uncharacterized protein LOC101232599 [Cucumis sativus]
Length = 446
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 147/364 (40%), Gaps = 60/364 (16%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+++ V G++P S +F E+Y ++ L +++ L+
Sbjct: 113 KVEMPVFDGDDPDSWLFCAERYFQIHKLTDSEKLT------------------------- 147
Query: 139 WAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFE 198
+ V ++ D ++PE F+ L IK+ ++ P L +
Sbjct: 148 -----ESSVEEYRNLFDKWVAPLSDIPEKIVEETFMGVLLPWIKVEMEFCNPVGLAEMMR 202
Query: 199 LARFQEEYAAVSNRRIPPRPS-MSRPSPPLLNS-SPTITKTGGSSQPS--------LLGP 248
A+ E + PR S + P+ L + + ++ K G+ + + L G
Sbjct: 203 YAQMVEHREILRREANLPRYSGVKVPNDTYLTAKTNSVLKEQGNKENTVFPIRTITLRGS 262
Query: 249 PPPGLP---PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKD--- 302
P + P ++LS AE +R KGLCF CDE++ GH+CKA ++ L + D
Sbjct: 263 PTKEIKKEGPSKQLSDAEFQAKREKGLCFKCDEKYYSGHKCKAKEIRELRMFVVRADDVE 322
Query: 303 --------------EQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
+ E +L E +E+ + ++ G T TM+++G ++ V +L+D
Sbjct: 323 EEIIEEDEYDLKGLKTMELQNDLGEVVELCINSVVGLTNPGTMKIRGTIQSKEVVVLVDC 382
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
+TH F++ L P T+ + V + G I C V ++ G+ +F L
Sbjct: 383 GATHNFISDRLVMTLKLPSKDTSNYGVILGSGTTIKGKRVCEKVELDLNGWTVMENFLPL 442
Query: 409 PVSG 412
G
Sbjct: 443 DWEG 446
>gi|147779107|emb|CAN73467.1| hypothetical protein VITISV_043900 [Vitis vinifera]
Length = 1593
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 128/304 (42%), Gaps = 62/304 (20%)
Query: 49 RNNNQPLQINNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLE 108
R+N+ + N P + Q + +L+F + +PT + + +Q+
Sbjct: 63 RDNHHSGRAENSTP---------MFQSKFAKLEFPRFAAGDPTMWLTKVKQFFDYQETPG 113
Query: 109 TDVLSLAIGHLDGDAVPWYHWLEQTMGN----MTWAQFKRALVTQFGTFEDGD------- 157
T + A HL+ +A W+ ++ +TW F+ L +FG+ E D
Sbjct: 114 TQKVQYAAYHLEDEANEWWQATKRAYAEEEAEITWEVFEEELWARFGSTECEDFDEALSK 173
Query: 158 --AVGT---------------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELA 200
GT Q + + F+ GL I G++M +P SL + LA
Sbjct: 174 IKQAGTFRDYQREFERLVNKVQGWTQKALVGTFMGGLHPSIADGIRMFRPKSLKEAISLA 233
Query: 201 RFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLS 260
R ++E R P P + R + NS ++T +RLS
Sbjct: 234 RMKDEQLQRQRRTQPNTPQIQRNTQQ--NSKGSLTT--------------------KRLS 271
Query: 261 VAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETL-EVSL 319
E ++R+ GLCF+CDE++ PGH+C+ PQLLL++ E E +E E L E E+SL
Sbjct: 272 WEEIRKKRSLGLCFSCDERYTPGHKCRQPQLLLMEG--ESGWEASEMEEPLVEQEPEISL 329
Query: 320 KALT 323
AL
Sbjct: 330 YALA 333
>gi|108708778|gb|ABF96573.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1481
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 147/342 (42%), Gaps = 54/342 (15%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
++DF G + + CE Y + + + +S A+ H+ G+A WYH + +
Sbjct: 575 KMDFPRFDGSDVRIWLDMCETYFDMYQITQNFKVSAAVLHMSGNAAQWYHSYKLVNEVNS 634
Query: 139 WAQFKRALVTQF------------------GTFEDG----DAVGTQ------NLPESFFI 170
W QF+ A+ T+F GT + D++ Q ++ +
Sbjct: 635 WDQFRMAVATEFECVVEREKMSALDTLTQTGTMTEYKQQFDSLVYQIRVFDPSMGGKMLV 694
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
+ F++GL E+I+ V + P ++ Q +A QE A SR + L
Sbjct: 695 THFMNGLTEEIRAAVVIQLPDTVQQASAIALMQESVLA------------SRATKALKGK 742
Query: 231 SPTI--TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC-- 286
+ K+ SS +L L ++L + RRA+GLCF C +++ P HRC
Sbjct: 743 FVKLPQYKSDVSSDTTLGRVDKGDLWKAKQL----KDYRRAQGLCFKCGDKYTPEHRCAV 798
Query: 287 ----KAPQLL-LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHG 341
KA +L +L DI D AE ++ E +SL A TGA + L+ +
Sbjct: 799 GGQIKAMKLEEVLTDDILDAVIAAEQSDD-EEDCHISLNAFTGAHLPTAIHLRALVHSKV 857
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI 383
+ +L+DS S+H F++ + A G P+ V VA+G +
Sbjct: 858 LLLLVDSGSSHSFIDYNFAHMLGLPLKPIPSTLVKVANGDCL 899
>gi|38344156|emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa Japonica Group]
Length = 1373
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A ED +E+ + +++S A+ G NT L +K V L+DS ST+ F+
Sbjct: 463 AKKEDDNEE--------QLMQISTHAIQGTYGINTFSLITYVKGRKVVALVDSGSTNTFM 514
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDI 415
N A + GC + +V VA GG+++S+ K + QG+ F F L+P+ G DI
Sbjct: 515 NYEFALRSGCEIIEFDHNRVMVAGGGILNSTAKTEVIQYKVQGYLFGKAFQLIPLKGYDI 574
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
VLGA+W+ I D + T+ T+KGQ +
Sbjct: 575 VLGADWIYEHSPINLDLKQRTLTVTYKGQNI 605
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R RL+ + +GE+ + +CE++ + ++LA GHL G A W+ L
Sbjct: 286 RSQRLELTIFNGEDAIGWLQQCEKFFEMTGTPVEQWVNLATGHLVGRAGKWFRNLGIPWH 345
Query: 136 NMTWAQFKRALVTQF-------------------------GTFEDGDAVGTQNLP---ES 167
+ W QF + +F FED A+ ++ P E
Sbjct: 346 YINWPQFYLMISDRFTEANAHEAVEQLQNVRQTGSVMHYIDKFEDSVALVKRDHPYLIEY 405
Query: 168 FFISCFLSGLREDIK 182
+ +SCF+ GLR DIK
Sbjct: 406 YILSCFIGGLRADIK 420
>gi|38346992|emb|CAD40278.2| OSJNBb0062H02.17 [Oryza sativa Japonica Group]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa Japonica Group]
Length = 1629
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 168/448 (37%), Gaps = 81/448 (18%)
Query: 73 VQPRHI-----RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWY 127
V+ RH +LDF G +P +CE Y + + +AI + G A W
Sbjct: 167 VEERHYSHRVPKLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAASWL 226
Query: 128 HWLEQTMGNMTWAQFKRALVTQF------------------GT----FEDGDAVGTQNLP 165
+ + W F AL +F GT +E D + + L
Sbjct: 227 RSTKAHVRFPNWEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNKLLV 286
Query: 166 ES------FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPS 219
+ F GL I+ V + +P L +A QEE ++
Sbjct: 287 YDPVVNMHYLTHRFTEGLYRKIRNVVLLQRPRDLESALAVALLQEEVLETADEVTGKEVK 346
Query: 220 MSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFR---------------------- 257
S + + G S +L G P PP R
Sbjct: 347 KSEGN------------SLGRSVANLRGAYPLPTPPMRSGGINMGIKSEEKKESEVRRSS 394
Query: 258 ----RLSVAEQTERRAKGLCFNCDEQFKPGHRCK------APQLL--LLDADIEDKDEQA 305
RLS + + +RRA+GLC+ C E++ P H+C A Q L +L +ED
Sbjct: 395 GTNERLS-SLKAQRRAQGLCYICAEKWSPTHKCSNTVQLHAVQELFTVLHESVEDGLSTT 453
Query: 306 EALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
+ + E + VSL+A+ G MR+ G ++ + IL+DS S+ F++ +A
Sbjct: 454 DHVVE-QTLMAVSLQAVQGTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVASSLMG 512
Query: 366 PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSL 425
+ QV VA G + + + QG F + +L ++ D++LG +WL
Sbjct: 513 VLEQPVHVQVMVAGGAKLHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQH 572
Query: 426 GAILWDFSKLTMQFTWKGQTVQLTGYDS 453
+ D++ ++ + G +QL G S
Sbjct: 573 SPMTVDWTTKSLIIAYAGTQIQLYGVRS 600
>gi|57863925|gb|AAS55774.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 2108
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/421 (23%), Positives = 161/421 (38%), Gaps = 59/421 (14%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P S RCE Y + + +A + G A W +
Sbjct: 883 KLDFPQFDGSDPQSWRMRCEHYFGVYGTHPNLWVRIATIYFMGRAASWLRSSRAHEVFVD 942
Query: 139 WAQFKRALVTQFGT----------------------FEDGDAVGTQNLPES------FFI 170
W +F A+ +F +E D + Q L +
Sbjct: 943 WGRFYEAMNRKFDRNQHRQLIRQLDQIKQTGSVSEFYERFDDLMNQLLTYDPMYNTLNLV 1002
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRP----------SM 220
F+ GLR DI+ V + P L LA QEE +S R R +
Sbjct: 1003 HRFIEGLRFDIREAVLLHCPEDLESALVLALLQEE---LSERNQEQRKFVDGSQKFKNAY 1059
Query: 221 SRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
P PP K G ++ + L L FRR A+GLC+ C E++
Sbjct: 1060 PLPLPPTKVLKTEEKKGGELNRGTNLSDKVSALRSFRR----------AQGLCYLCAEKW 1109
Query: 281 KPGHRCKAP-------QLLLLDADIEDKDEQAEALEELPETL-EVSLKALTGATPQNTMR 332
P H+C +L L D ++D+ + + E+ +L +S+ A+ G Q+T+R
Sbjct: 1110 SPTHKCSGTVQLHAVQELFALFPDNANEDQASISSEDSDSSLLAMSVHAVQGTDSQSTIR 1169
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
L+G ++ + +L+DS S F++ LA + V VA+G V+ +
Sbjct: 1170 LQGKIQGLNILMLVDSGSLASFISDQLADRLTGVQFLAHPLSVKVANGQVLHCQKEMPSA 1229
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYD 452
G +F F ++ + G D +LG +WL + D+ ++ T G V L G
Sbjct: 1230 EWFVSGQKFLTTFKVVALGGYDAILGMDWLTKYSPMQIDWQLKSIHLTVMGHEVLLRGVQ 1289
Query: 453 S 453
S
Sbjct: 1290 S 1290
>gi|14165316|gb|AAK55448.1|AC069300_3 putative polyprotein [Oryza sativa Japonica Group]
gi|31433481|gb|AAP54986.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1409
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 144/364 (39%), Gaps = 77/364 (21%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
RL+ + GE P + +CE++ + ++LA+ HL G A+ WY + ++
Sbjct: 241 RLEIPLFGGEEPVDWLKQCEKFFEITGTPVDQWVNLALAHLQGRAIKWYRGIGIPWQLIS 300
Query: 139 WAQFKRALVTQFGTFEDGDAVGT-QN----------------------------LPESFF 169
W Q+ + T+F + +AV QN L E +
Sbjct: 301 WPQWCAMVCTRFSAADVHEAVELFQNVKQHGQTVDQYIDKFEEYMDLVKRDHPYLQEQYL 360
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSR-PSPPLL 228
SCF+ GLR DIK V KP LL+T+ A+ E+ A + RR+ + +R P+ ++
Sbjct: 361 NSCFIGGLRNDIKHDVSGHKPQGLLETYWYAKNYEK--AANARRMTMGLNRNRLPNQNVI 418
Query: 229 NSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKA 288
N +PP + C+ C E + PGH+CK
Sbjct: 419 NQGRNFANK---------------VPP----------KTNGDKKCWFCKEVWFPGHQCKV 453
Query: 289 PQLL--------------LLDADIEDKDEQAEALEELP------ETLEVSLKALTGATPQ 328
+ L + +++ ++ E E P E + VS A+ G T
Sbjct: 454 KKALNALMLEDEELEEKGEEEKEVKTREMTQENGETSPDESGTEELMYVSQNAMQGTTRP 513
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+T + + L+DS ST F++ A + CP +T +V VA GG + S +
Sbjct: 514 DTFSMIIQIHGKRAIGLVDSGSTSTFMDEEFALRNNCPTISTEVKRVEVAGGGELKSGVQ 573
Query: 389 CSHV 392
+ V
Sbjct: 574 ITQV 577
>gi|116310275|emb|CAH67280.1| OSIGBa0111L12.7 [Oryza sativa Indica Group]
Length = 940
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 22/243 (9%)
Query: 216 PRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFN 275
P P ++ PP++++ T+ S+ + RLS A ++ RR+KGLCF
Sbjct: 194 PLPPTTKGGPPIISNDRIGTELNNHSRE------------YDRLS-ALKSYRRSKGLCFV 240
Query: 276 CDEQFKPGHRCKAPQLL-----LLDADIEDKDEQAEALEELPET---LEVSLKALTGATP 327
C E++ H+C + L LLD ++ + +A+ E PE+ + +S +A+
Sbjct: 241 CGEKWGRDHKCASSIQLHVVQELLDV-LQGSSQSEQAVSEPPESDTLMAISQQAINVTDS 299
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
+++RL+G ++ + +LIDS STH F+ + + +V VADGG ++ S
Sbjct: 300 NHSIRLRGWVQGIEILMLIDSGSTHSFVYQQIGLKLSGVKAMPVPARVKVADGGFLTCSL 359
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
+QG F +F LLP+ +++L +WL + D+ ++F V+
Sbjct: 360 HIIECDWLTQGIHFKSNFRLLPLGAYNVILEMDWLERFSPMRVDWVHKWLEFQLNDSMVR 419
Query: 448 LTG 450
L G
Sbjct: 420 LQG 422
>gi|108706173|gb|ABF93968.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2453
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 154/379 (40%), Gaps = 44/379 (11%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW----- 139
G+NP CE Y + + +A + G+A W + + +TW
Sbjct: 2079 FDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGVTWVELCE 2138
Query: 140 ---AQFKR----ALVTQFGTFEDGDAVG----------------TQNLPESFFISCFLSG 176
A+F R L+ Q+ +V L +F++ F+ G
Sbjct: 2139 KVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFDSLMHQLIAYDSELKPVYFVTKFVEG 2198
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITK 236
L++ I + + +P L LA QEE A + RR+ S P ++ ++
Sbjct: 2199 LKDAIHTVIMVQRPQDLDTACSLALLQEE-AMLGTRRL----EFSTPVKSNFRNTAQVSL 2253
Query: 237 TGGSSQPSL----LGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL 292
T +P + P + P + + R++KGLCF C E++ H+C + L
Sbjct: 2254 TPLPVRPVVNEDKKTPEAAKITPRDDRLSSLKAYRKSKGLCFTCGERWGRDHKCASTVQL 2313
Query: 293 -----LLDADIEDKDEQAEALEELPET--LEVSLKALTGATPQNTMRLKGNLKKHGVTIL 345
LL+A ED D + + E + VS +A+ G ++R++G ++ + +L
Sbjct: 2314 HVMEELLEALQEDDDPVGDDIVAEAEGTLMAVSSQAIAGVESSKSIRVRGWVQGLELLML 2373
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
+DS STH F++ +A++ T + Q+ +ADGG + + QG F +F
Sbjct: 2374 VDSGSTHSFIDEQVARKLAGIQTLSHPVQIKIADGGTMQCDRSIPNCNWWIQGCSFRTEF 2433
Query: 406 FLLPVSGCDIVLGAEWLRS 424
+L + WLRS
Sbjct: 2434 RVLLSRALIPRVAGPWLRS 2452
>gi|15451606|gb|AAK98730.1|AC090485_9 Putative mutator-like transposase [Oryza sativa Japonica Group]
Length = 2421
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 154/379 (40%), Gaps = 44/379 (11%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW----- 139
G+NP CE Y + + +A + G+A W + + +TW
Sbjct: 2047 FDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGVTWVELCE 2106
Query: 140 ---AQFKR----ALVTQFGTFEDGDAVG----------------TQNLPESFFISCFLSG 176
A+F R L+ Q+ +V L +F++ F+ G
Sbjct: 2107 KVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVDKFDSLMHQLIAYDSELKPVYFVTKFVEG 2166
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITK 236
L++ I + + +P L LA QEE A + RR+ S P ++ ++
Sbjct: 2167 LKDAIHTVIMVQRPQDLDTACSLALLQEE-AMLGTRRL----EFSTPVKSNFRNTAQVSL 2221
Query: 237 TGGSSQPSL----LGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL 292
T +P + P + P + + R++KGLCF C E++ H+C + L
Sbjct: 2222 TPLPVRPVVNEDKKTPEAAKITPRDDRLSSLKAYRKSKGLCFTCGERWGRDHKCASTVQL 2281
Query: 293 -----LLDADIEDKDEQAEALEELPET--LEVSLKALTGATPQNTMRLKGNLKKHGVTIL 345
LL+A ED D + + E + VS +A+ G ++R++G ++ + +L
Sbjct: 2282 HVMEELLEALQEDDDPVGDDIVAEAEGTLMAVSSQAIAGVESSKSIRVRGWVQGLELLML 2341
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
+DS STH F++ +A++ T + Q+ +ADGG + + QG F +F
Sbjct: 2342 VDSGSTHSFIDEQVARKLAGIQTLSHPVQIKIADGGTMQCDRSIPNCNWWIQGCSFRTEF 2401
Query: 406 FLLPVSGCDIVLGAEWLRS 424
+L + WLRS
Sbjct: 2402 RVLLSRALIPRVAGPWLRS 2420
>gi|116309666|emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group]
Length = 1434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 147/380 (38%), Gaps = 96/380 (25%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R RL+ + +GE+ + +CE++ + ++LA GHL G A W+ L
Sbjct: 224 RSQRLELTIFNGEDAIGWLQQCEKFFEMTGTPVEQWVNLATGHLVGRARKWFRNLGIPWH 283
Query: 136 NMTWAQFKRAL------------------VTQFGT-------FEDGDAVGTQNLP---ES 167
+ W QF + V Q G+ FED A+ ++ P E
Sbjct: 284 YINWPQFYLMISDIFVEANAHEAVEQLQNVRQTGSVMHYIDKFEDSVALVKRDHPYLIEY 343
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQT------FELARFQEEYAAVSNRRIPPRPSMS 221
+ +SCF+ GLR DIK V KP SLL F ++ Q + +N +
Sbjct: 344 YILSCFIGGLRADIKHDVCGQKPQSLLAGGNAQGGFNKSKPQFQSGGFNNNK-------- 395
Query: 222 RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFK 281
N TGG R K C+ C E +
Sbjct: 396 -------NVGQKGANTGGE---------------------------REKKTCWYCKEPWS 421
Query: 282 PGHRCKAPQLLLLDADIEDKDEQAEALEELPE--------------------TLEVSLKA 321
H+C+ +++ + ++ED+ E++ + EE E +++S A
Sbjct: 422 YQHKCRTRKVIHMMEEVEDEKEESGSPEENQEGEYQTAPGSPAKKEDDNEEQLMQISTHA 481
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+ G NT L +K L+DS ST+ F+N A + GC + +V VA GG
Sbjct: 482 IQGTYGINTFSLITYVKGRKAVALVDSGSTNTFMNYEFALRSGCEIIEFDHNRVMVAGGG 541
Query: 382 VISSSGKCSHVPVNSQGFQF 401
+++S+ K + QG+ F
Sbjct: 542 ILNSTAKTEVIQYKVQGYLF 561
>gi|108864085|gb|ABA91843.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1411
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 21/242 (8%)
Query: 263 EQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADI-----------EDKDEQAEALEEL 311
+QT+ + C+ C E + PGH+CK + L +K Q + LEE
Sbjct: 249 DQTKGMERKKCWFCKEAWFPGHQCKVKKALNALLLEEEEYEGTEEVGREKKAQEKVLEET 308
Query: 312 ---PETLE------VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQ 362
PE ++ VS A+ GAT +T + + L+DS S F++ A +
Sbjct: 309 EHAPEEIDQEELMYVSQNAMQGATRPDTFSVIIQINGRRAVGLVDSGSPSTFMDQEYAIR 368
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
CP+ +T +V VA GG + S + + QG F F L+P+ G DI+LGA+W+
Sbjct: 369 NDCPLVSTDSKKVVVAGGGELKSEVQVPDILYQIQGETFSNKFNLIPLKGYDIILGADWI 428
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGY-DSLPPALANHGEINQLLLQEKQGIFFQIMA 481
I D K + T + + L + ++ L + ++++++ + G FQI
Sbjct: 429 YKYSPITLDLKKRELGITKGEKVITLQDFTNTGKHLLVDSSKVDKIIRKGGLGYLFQITQ 488
Query: 482 IT 483
+
Sbjct: 489 VA 490
>gi|255563126|ref|XP_002522567.1| conserved hypothetical protein [Ricinus communis]
gi|223538258|gb|EEF39867.1| conserved hypothetical protein [Ricinus communis]
Length = 174
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 18/135 (13%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRP 223
LPE F + CF++GLR++I++ V++ +P +L + R EE + + P
Sbjct: 49 LPEGFLVGCFIAGLRDEIRLDVKIKQPKTLADAIGVTRLVEERNRLQKKS---------P 99
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPP--PGLP-------PFRRLSVAEQTERRAKGLCF 274
P + T +K +S +LGP P G P FRR++ E ER+ KGLC+
Sbjct: 100 DPSRFQPATTASKINSTSASGVLGPRPVQRGNPNANANPTTFRRITNQEVRERQEKGLCY 159
Query: 275 NCDEQFKPGHRCKAP 289
CDE+F PGHRC+ P
Sbjct: 160 YCDEKFTPGHRCQRP 174
>gi|18652523|gb|AAL77156.1|AC091732_7 Putative polyprotein [Oryza sativa Japonica Group]
gi|21672107|gb|AAM74469.1|AC124213_27 Putative retroelement [Oryza sativa Japonica Group]
gi|31431768|gb|AAP53494.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 999
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 121/289 (41%), Gaps = 56/289 (19%)
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSP 225
+++F++ F+ GL+ +IK +++ KP S+ LA+ QEE N++ +
Sbjct: 184 DTYFVTKFMGGLKTEIKAAIKLHKPRSVDAALSLAKTQEELLGELNKKPYQKHHFKELYK 243
Query: 226 PLLNSSPTITKTGGSSQP---SLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKP 282
P +N P K + P + P F L A RRA+G CF C E++ P
Sbjct: 244 P-VNKLPYQGKGILGAAPEENKKVDEKPKWEEQFDSLKAA----RRARGECFKCGEKYGP 298
Query: 283 GHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQN-TMRLKGNLKKHG 341
GH+C K Q +EE+ + ++ TG + MR +L+
Sbjct: 299 GHKCP-------------KSVQLHVVEEIWDIFQLHGGIETGEEMKRVVMRNWYSLR--- 342
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
SSS FL L + G KC V +QG F
Sbjct: 343 ------SSSN--FLAEHLVDKLGL----------------------KCKEVQ-TTQGQTF 371
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
DF +L + G D++LG EW + IL D+ K T+ FT++ Q V LTG
Sbjct: 372 VTDFKILALGGYDMILGMEWPEAFSPILVDWQKKTLNFTYQQQRVTLTG 420
>gi|440577377|emb|CCI55401.1| PH01B015M02.2 [Phyllostachys edulis]
Length = 1655
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 144/344 (41%), Gaps = 43/344 (12%)
Query: 69 GGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYH 128
G P +LDF GENP + RCE Y R+ A Y
Sbjct: 151 GNHHYNPAPPKLDFPQFDGENPNAWRLRCEVYFRVYATRP------------------YL 192
Query: 129 WLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQML 188
W G + ALV + + + +N ++ S LSG+ + +L
Sbjct: 193 W---CYGYIQLKLILSALVGKNLLRQSVCILAKRNFNKNSTNSTALSGMEQ----SQSLL 245
Query: 189 KPASLLQTFELARFQEEYAAVSNR-RIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLG 247
K + E + + + +SN R PPR ++ P+PP SP T + +
Sbjct: 246 KACLQEEVLETMQRENRRSELSNGGRPPPRMTLPLPAPP--GRSPGGTGNRDDDRRGVDS 303
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQL----------LLLDAD 297
G P ++S A + RRAK LC CDE++ HRC P + L+ D +
Sbjct: 304 ARVNG--PDDKIS-ALKAYRRAKDLCHICDEKWNREHRC-GPTVQLHLVQEMWELVQDPN 359
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
+E + + E L +S+ A+ G T+RLKG ++ V ILIDS STH F+
Sbjct: 360 LEPTPSEG-GTSQGNEVLAISVAAVKGGESPKTVRLKGIVQGMEVLILIDSGSTHSFVGE 418
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
+LA + + + VT+ADGG ++S+ + QG +F
Sbjct: 419 ALANKLKGKHESFRRVNVTIADGGTLTSTKEFPDCYWQVQGVKF 462
>gi|108706366|gb|ABF94161.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1217
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/420 (22%), Positives = 162/420 (38%), Gaps = 87/420 (20%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
GENP CE Y + + + + +A+ + G+A W + + ++W +
Sbjct: 317 FDGENPQMWRDNCEIYFDVYGVHVANWVKVALLNFTGNASFWLQPVRNQLVGISWMELCD 376
Query: 145 ALVTQFGT----------FEDGDAVGTQNLPESF------------------FISCFLSG 176
+ +F F G E F F++ F+ G
Sbjct: 377 KVCRKFTRDRQEHLIRQWFHVGQTGSVAEYVERFDGLMHQLLSYDNALTPLYFLTKFVDG 436
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR------------RIPPRPSMSRPS 224
L+E+I+ V + KP L T +A EE S + R+ RP+++
Sbjct: 437 LKEEIREAVMLQKPIDLDATCSVALLHEEILEGSKKTNYKKGEGTGLHRVFSRPTLNTAF 496
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSV-AEQTERRAKGLCFNCDEQFKPG 283
P +SP K G S + FR V A ++ RR KGLCF C E++
Sbjct: 497 PKSPVTSPVEDKKGVDSVRT----------NFRDDKVSALKSYRRVKGLCFTCGERWGKD 546
Query: 284 HRC-KAPQLLLLDADIE--DKDEQAEALEELPE-------TLEVSLKALTGATPQNTMRL 333
H+C + QL +++ +E DE + PE + +SL A G ++R+
Sbjct: 547 HKCAQTVQLQVVEELLEAFQIDETDNTMVTSPEPVLENNQLMAISLNAYNGTDSTRSLRI 606
Query: 334 KGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVP 393
+L+ V +VT+ADGG++ +
Sbjct: 607 VHHLQGV--------------------------VKLPVPVKVTIADGGLLQCEKQLPDCA 640
Query: 394 VNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
QG + +F LLP+SG D +LG +WL LG + D+ + +++ G V++ G S
Sbjct: 641 WWLQGRCYKSNFKLLPLSGYDAILGMDWLVGLGVMKIDWEQKWLEYLDNGFPVKIQGVQS 700
>gi|297613085|ref|NP_001066669.2| Os12g0428300 [Oryza sativa Japonica Group]
gi|255670262|dbj|BAF29688.2| Os12g0428300 [Oryza sativa Japonica Group]
Length = 545
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
++DF G + + CE Y + E +S A ++ GDA WY + G
Sbjct: 150 KMDFPRFDGTDVRVWLDNCETYFGFYQITEGFQVSAASLNMIGDAANWYQAWKLETGWHN 209
Query: 139 WAQFKRA------------------LVTQFGTFEDGDAVGTQN----------LPESFFI 170
W K A L+TQ G+ + + Q L ++F I
Sbjct: 210 WESLKTAVLNEFEVNLESVKMDELLLLTQTGSVTEYRSKFNQLVYQLRLYDPLLSDTFLI 269
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
FL GL+++++ VQ +P S+ Q + L E A +
Sbjct: 270 RHFLLGLKDELRSAVQAQQPTSVSQAY-LVALAHESAQLG-------------------- 308
Query: 231 SPTITKTGGSSQP--SLLGPPPPGLPPFRRLSVAEQTE-RRAKGLCFNCDEQFKPGHRC- 286
T TK G + ++ G L P + E RRA+GLCF C E++ PGH C
Sbjct: 309 --TGTKKGHYKKEHVAIRGTDKLKLAPGELWKAQQLKEYRRAQGLCFKCGEKYAPGHVCA 366
Query: 287 --KAPQLLLLDADIEDK---DEQAEALEEL---PETLEVSLKALTGATPQNTMRLKGNLK 338
+ QL L E + DE +A+ L +++ +SL A+ G P +T++L+ ++
Sbjct: 367 KQEGVQLKALHVQEESEVLSDEVLDAITALDVSSDSISLSLHAMAGTCPSHTVQLRALVQ 426
Query: 339 KHGVTILIDSSSTHIFLNSSL 359
+ IL+DS STH F+++ L
Sbjct: 427 NQVIIILVDSGSTHSFIDAGL 447
>gi|449531517|ref|XP_004172732.1| PREDICTED: uncharacterized protein LOC101232451 [Cucumis sativus]
Length = 392
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 2/179 (1%)
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A+ EDK +E L +E+S+ ++ G + TM++KG ++ V +LID +TH F+
Sbjct: 21 AETEDKTVAIGNVENL--NIELSINSVVGLSNSGTMKVKGKIQGTEVVVLIDCGATHSFI 78
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDI 415
+L P+T T+ V + G + G C V V ++ F L + G D+
Sbjct: 79 VDNLVTSLKLPLTETSNCGVILGSGAAVKGKGICGQVEVMVGEWKIVDSFLPLELEGVDV 138
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQG 474
+L +WL SLG +++ KL M F +G+ V + G SL + + + + E QG
Sbjct: 139 ILDMQWLHSLGVTEFNWRKLVMTFQHEGKKVVIRGDPSLTKMMVSLKSMMKSWNVEDQG 197
>gi|147807720|emb|CAN66553.1| hypothetical protein VITISV_018166 [Vitis vinifera]
Length = 1448
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%)
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
M++KG + V IL+DS +TH FL+ L +Q P+TTTT ++V + G + G C
Sbjct: 1 MKIKGMIGSKEVIILVDSGATHNFLSLELVQQLALPLTTTTSYEVMMGTGISVKGKGICR 60
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
V ++ QG DF L + D++LG WL +LG + ++ LTM+ + L G
Sbjct: 61 GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKG 120
Query: 451 YDSLPPALANHGEINQLLLQEKQGIFFQIMAITTS 485
SL + + + L QG++ + +T+
Sbjct: 121 DPSLSRIEVSLKAMTRALQHHSQGVWVEXYQTSTT 155
>gi|147802351|emb|CAN77123.1| hypothetical protein VITISV_013625 [Vitis vinifera]
Length = 439
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%)
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
T+R+ G LK +T+LID ++TH F++ + ++G V + QV VA+ I G+
Sbjct: 274 TLRVLGRLKNKYLTVLIDDNNTHNFIDQIVVSRFGLLVVREKKIQVVVANQEWIECMGQF 333
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
+ + Q D+++LP++ C +VLG +WL +LG+I D+ LTM F G
Sbjct: 334 LGLTLIIQEIPVTADYYILPMAACQVVLGVQWLETLGSIESDYKALTMSFKLGGARHTFH 393
Query: 450 GYDSLPPALANHGEINQLLLQEKQGI 475
G D N+ +N + +++K I
Sbjct: 394 GVDGSWRFCVNYRALNSITIKDKYPI 419
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 96 RCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQF-KRALVTQFGTFE 154
RCE +ET V A H +G A+ W+ WL + G ++W F K L+ Q
Sbjct: 132 RCESSFDQKIAVETQV-XFASFHFEGIALQWHCWLMKFRGPLSWNDFTKTILLRQLQWLH 190
Query: 155 DGDAVGTQNLPESFFISC-----FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAV 209
+ + + ++S F++ L +DI + V++ +P +L+ +AR EE +
Sbjct: 191 TRRHLRDSPIRSTDYLSHFSSIDFIARLCDDICLDVKIKQPRTLVAAIGVARLIEERNLL 250
Query: 210 SNR-----RIPPRPSMSR-PSPPLL 228
+ RIP ++ P+PP L
Sbjct: 251 QKKTTTPSRIPMTTTLQNGPNPPTL 275
>gi|39546224|emb|CAE04473.3| OSJNBa0029L02.14 [Oryza sativa Japonica Group]
Length = 602
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 26/238 (10%)
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPL 227
FF++ F+ GLR +I+ V M +P L +LAR QEE + RR RP S S
Sbjct: 16 FFVTQFVEGLRAEIRAAVIMHRPEDLGTAVDLARLQEEVLE-AIRRESRRPETSSSSRTT 74
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTER------RAKGLCFNCDEQFK 281
S T+ G QP + G +R+S E +AKGLC+ C E++
Sbjct: 75 NFCSATVFPVG---QPRTI--LAAGTRSDKRMSRVEDKVAALHAILKAKGLCYTCGERWS 129
Query: 282 PGHRCK-APQLLLLDADIEDKD---------EQAEAL----EELPETLEVSLKALTGATP 327
H+ QL +++ +E +D E+ A+ E E ++S +A+ G
Sbjct: 130 RDHKYGPTVQLHVVEELLEFRDSSSKERGDEEKDSAVIPNSEYEGEVCQISKEAMQGTET 189
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
T+RL+G ++ + + +L++S S+H F++ LA ++ + +V VADGG +S
Sbjct: 190 SGTLRLQGLIQHNEILMLVNSGSSHSFISEGLADKWTQQRHVLSPIKVKVADGGFTTS 247
>gi|222618930|gb|EEE55062.1| hypothetical protein OsJ_02776 [Oryza sativa Japonica Group]
Length = 692
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 47/286 (16%)
Query: 79 RLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNM 137
+L+F G+ +P + RCE + R ET + A HL GDA WY+ +E G
Sbjct: 226 KLEFPTYDGKGDPLPWLNRCETF-RGQKTPETRKVWYASLHLIGDAQLWYYRIELNSGEP 284
Query: 138 TWAQFKRALVTQFGTFEDGDAVG----------TQNLPESFF-ISC-------------F 173
+W +F + + T+FG +G +N SF ++C F
Sbjct: 285 SWRRFVQLVHTRFGPPMTDSPLGELTALRRTGTVENYVNSFLALACRDVELSESQQVQLF 344
Query: 174 LSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAV--SNRRIPPRPSMSRPSPPLLNSS 231
+GL +K V + +P SL LAR E+ A + ++ P + RPS P +++
Sbjct: 345 TAGLVNPLKTDVALCRPRSLDDAIMLARAYEQRATLGPTDPSAPRTGRVPRPSLPASSAA 404
Query: 232 ---------PTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKP 282
T QP + P +RLS AE +RR++GLC+NCDE++
Sbjct: 405 SASASTTSADVAASTAAGKQPLV------SALPRKRLSPAEMAQRRSEGLCYNCDEKYVA 458
Query: 283 GHRCKAPQLLLLDADIEDK-DEQAEALEELPETLE---VSLKALTG 324
GHRCK ++ + + ED DE+ E TL+ + L AL G
Sbjct: 459 GHRCKKSFVIEVISFPEDTGDEEDSTPEAHAITLDEPSIFLHALAG 504
>gi|307136368|gb|ADN34181.1| retrotransposon protein [Cucumis melo subsp. melo]
Length = 295
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 55/260 (21%)
Query: 70 GALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHW 129
G+ + ++ +L+ V +GENP + I+R E Y + L++ + + +A+ D V W+ W
Sbjct: 48 GSSDRSKYKKLEIPVFNGENPETWIYRAEHYFDINELVDEEKVKVAVVSFGPDEVNWFRW 107
Query: 130 LEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQ-------------------------NL 164
TW KR + F + +G ++G + +
Sbjct: 108 SNNRKKVKTWEDLKRRMFEHFKSPGEG-SLGARLIRIKQDGCYSDYLKKFLEYSAPLPEM 166
Query: 165 PESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPS 224
ES I F++GL +++ V+ P +L + ++ + A+ +P + + +
Sbjct: 167 AESVLIDAFVTGLETNLQAEVKSRHPVTLEECSGKPKWAD--FAMKQLTLPIKGNFVKKE 224
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH 284
P PP +RLS +E R KGLCF C++++ PGH
Sbjct: 225 PQ---------------------------PPVKRLSDSEFRARLDKGLCFRCNDKYSPGH 257
Query: 285 RCKAPQLLLLDADIEDKDEQ 304
RCKA L I ++DE+
Sbjct: 258 RCKAKTNRELMFFITNEDEE 277
>gi|52353389|gb|AAU43957.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1263
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 159/430 (36%), Gaps = 77/430 (17%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P RCE Y + + +A + G A W +
Sbjct: 183 KLDFPQFDGSDPQGWRLRCEHYFGVYGTHPNLWVWVATIYFMGRAASWLRSSRAHEVFVD 242
Query: 139 WAQFKRALVTQFGT----------------------FEDGDAVGTQNLPES------FFI 170
W +F A+ +F +E D + Q L +
Sbjct: 243 WGRFCEAVNRKFDRNQHRQLIRQLDQIKQTGSVSEFYEWFDDLMNQLLTYDPMYNTLNLV 302
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
F+ GLR DI+ V + P L LA QEE +S R R
Sbjct: 303 HQFIEGLRFDIRKAVLLHCPKDLESALVLALLQEE---LSERNQEQR------------- 346
Query: 231 SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQ-------------------TERRAKG 271
K G SQ P P LPP + L E+ + RRA+G
Sbjct: 347 -----KFGDGSQKFKNAYPLP-LPPTKALKSEEKKGGELNRGTNLSDKVSALRSFRRAQG 400
Query: 272 LCFNCDEQFKPGHRCKAP-------QLLLLDADIEDKDEQA-EALEELPETLEVSLKALT 323
LC+ C E++ P H+C +L L D ++D+ + + L +S+ A+
Sbjct: 401 LCYLCAEKWSPTHKCSGTVQLHAVQELFALFPDNVNEDQAGISSEDSDSSLLAMSVHAVQ 460
Query: 324 GATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI 383
G Q+T+RL+G ++ + +L+DS S+ F++ LA + V VA+G V+
Sbjct: 461 GTDSQSTIRLQGKIQGLNILMLVDSGSSASFVSDQLADRLTGVQFLAHPLSVKVANGQVL 520
Query: 384 SSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKG 443
+ G +F F ++ + G D +LG +WL + D+ ++ G
Sbjct: 521 HCQKEMPSAEWFVSGQKFLTTFKVVALGGYDAILGMDWLTKYSPMHIDWQLKSIHLIVMG 580
Query: 444 QTVQLTGYDS 453
V L G S
Sbjct: 581 HEVLLRGVQS 590
>gi|449504804|ref|XP_004162299.1| PREDICTED: uncharacterized protein LOC101228789 [Cucumis sativus]
Length = 250
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%)
Query: 306 EALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
E ++ +E+ +K++ G T TM+++G ++ V +L+D +TH F++ L
Sbjct: 2 EVQNDIEGVVELCIKSVVGLTNVGTMKIRGEIQGKEVIVLVDCGATHNFISDKLVATLQL 61
Query: 366 PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSL 425
P T+ + V + G I G C V +N G+ DF L + G D++LG +WL SL
Sbjct: 62 PTKDTSNYGVILGSGTAIKGKGVCEQVKLNLNGWMITTDFLPLELGGVDVILGMQWLYSL 121
Query: 426 GAILWDFSK 434
G D+ K
Sbjct: 122 GVTEVDWKK 130
>gi|449479800|ref|XP_004155711.1| PREDICTED: uncharacterized protein LOC101230021 [Cucumis sativus]
Length = 1480
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%)
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
AE ++E +E+S+ ++ G + TM++KG L + +LID +TH F++ SL ++
Sbjct: 1194 AEVIQEEHAVVELSINSVVGLSNPGTMKVKGKLLGREIIVLIDCGATHNFISESLVEELQ 1253
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS 424
+TT + V + G I G C + + ++ DF LL + G D +LG +WL S
Sbjct: 1254 ISTKSTTNYGVILGSGTAIKGKGVCEAIEMMIGEWRVIDDFLLLELGGVDAILGMQWLYS 1313
Query: 425 LGAILWDFSKLTMQF 439
LG D+ L + F
Sbjct: 1314 LGITEVDWKNLILTF 1328
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+++ LV +G++P S +F E+Y ++ L + + +A +G A+ WY E+ +
Sbjct: 1001 KVEMLVFNGDDPDSWLFCTERYFQIHKLTDFVKMIVATISFEGPALNWYRSQEERDKFVD 1060
Query: 139 WAQFKRALVTQFGTFEDGDAVG 160
WA K ++ +F + +G G
Sbjct: 1061 WANLKERVLVRFRSTREGSLYG 1082
>gi|449475049|ref|XP_004154359.1| PREDICTED: uncharacterized protein LOC101211870, partial [Cucumis
sativus]
Length = 674
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 255 PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP-----QLLLLDAD-------IEDKD 302
P +RLS E +R KGLCF CDE++ GH+CKA Q+ ++ AD ED
Sbjct: 67 PSKRLSDVEFQAKREKGLCFKCDEKYYSGHKCKAKEIRELQMFVIRADNVEEEIIEEDVY 126
Query: 303 EQAEAL-----EELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
EQ E E+ +E+ + ++ G T M+++G ++ V +LID +TH F++
Sbjct: 127 EQRELCTMELKSEIEGVVELCINSVVGLTNPGAMKVRGKIQGREVIVLIDCGATHNFISD 186
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQG 398
L T+ + V G I G C V V+ G
Sbjct: 187 KLVLMLKLNTKDTSNYGVIFGSGTAIKGRGICEKVEVDLDG 227
>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1280
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 131/345 (37%), Gaps = 64/345 (18%)
Query: 84 VLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFK 143
+ G++P + I R E Y + + + L+ ++G + W++ L +T +++ + K
Sbjct: 751 LFEGDDPVAWITRAEIYFDVQNTPDDMRVKLSRLSMEGPTIHWFNLLMETEDDLSREKLK 810
Query: 144 RALVT------------------QFGTFED--------GDAVGTQNLPESFFISCFLSGL 177
+AL+ Q G+ E+ VG LPE ++ F+SGL
Sbjct: 811 KALIARYDGRRLENPFEELSTLRQIGSVEEFVEAFELLSSQVG--RLPEEQYLGYFMSGL 868
Query: 178 REDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKT 237
+ I+ V+ L P + +Q RI P K
Sbjct: 869 KAHIRRRVRTLNPTTRMQMM---------------RIAKDVEDELNEEDDDGGRPYGKKH 913
Query: 238 GGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG-HRCKAPQLLLLDA 296
GG G R + E ERRAKGLCF C ++ P H+C L +L
Sbjct: 914 GGDRVERWKG--------VRSIQNGEMAERRAKGLCFKCGGKYHPTLHKCPEKSLRVLIL 965
Query: 297 DIEDKDEQAEALEELPETLEVS------------LKALTGATPQNTMRLKGNLKKHGVTI 344
+ + + L + + L NTM++ G L+ V +
Sbjct: 966 GEGEGVNEEGEIVSLETQEVLEEEEEEIESECKVIGVLGSMGEYNTMKIGGKLENIDVVV 1025
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
L+DS +TH F+++ L G +T ++ + DG + S G C
Sbjct: 1026 LVDSGATHNFISAKLTSALGLTITPMAARKIKLGDGHEVLSQGVC 1070
>gi|449526146|ref|XP_004170075.1| PREDICTED: uncharacterized protein LOC101232562, partial [Cucumis
sativus]
Length = 497
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%)
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
AE ++E +E+S+ ++ + TM++KG L + +L+D +TH F++ SL ++
Sbjct: 35 AEVIQEEQTVVELSINSVVRLSNPGTMKVKGKLLGKEIIVLVDCGATHNFISESLVEELQ 94
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS 424
+TT F V + G I G C + + ++ DF L + D +LG +WL S
Sbjct: 95 ISTKSTTNFGVILGSGTAIKGKGVCEAIEMIIGEWRVIDDFLPLELGSVDAILGMQWLYS 154
Query: 425 LGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAI 482
LG D+ L + FT G+ + + G SL A + + + + QG + A+
Sbjct: 155 LGITEVDWKNLILTFTHHGEKIVIRGDPSLTKARVSLKTLMKSWGDKDQGFLVECRAL 212
>gi|8778789|gb|AAF79797.1|AC020646_20 T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 99/451 (21%), Positives = 165/451 (36%), Gaps = 120/451 (26%)
Query: 44 RFQEDRNNNQPLQINNQQPEPAGRIGGALVQPRHIRLDFL------VLSGENPTSLIFRC 97
R Q+ RN Q+ Q EP +++PR IR + L + G I R
Sbjct: 98 RSQDHRN-----QVRVSQLEPCR----GVIRPR-IRENLLKNVEMPMFDGSGIYGWIARV 147
Query: 98 EQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGT----- 152
E++ R E + L+L + G+A+ WY+W ++W + K L+ +FG
Sbjct: 148 ERFFRSGGYNEAEQLALVSVSVSGEALSWYNWAISRGDFVSWLKLKSGLMLRFGNLKLRG 207
Query: 153 --------------------FED-GDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPA 191
FED VG L + FL+GL +++ V M KP
Sbjct: 208 PSQSLFCIKQTGSVAEYVQRFEDLSSQVG--GLDDQKLEGIFLNGLTGEMQELVHMHKPQ 265
Query: 192 SLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPP 251
+L + +AR E +V R +
Sbjct: 266 NLPEMVAVARSME--TSVMRRVVQ------------------------------------ 287
Query: 252 GLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDAD-------IEDKDEQ 304
+ L + + E+R KG+CF CD + H+C +L +L +E +
Sbjct: 288 -----KELQLVKLDEKRRKGICFRCDGPWSKEHKCPNKELRVLTVINGFEMEVLESNSVE 342
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
E + + + E+S + G T+++KG++ K Q+
Sbjct: 343 EEFHDSVAQFAELSFSSYMGLPSYTTIKMKGSICK----------------GEWCHTQFY 386
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHV----PVN-SQGFQFHLDFFLLPVSGCDIVLGA 419
P F + + G + G C V PV Q + F L + D++LG
Sbjct: 387 FP-----NFHIRLGTGITVQGLGLCDKVTMTLPVGCGQELELTTHFITLDLGPVDVILGI 441
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
WLR+LG ++ + + F + G+TV L G
Sbjct: 442 AWLRTLGDCKVNWERHELSFLYHGRTVTLRG 472
>gi|62733109|gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1513
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 277 DEQFKPGHRCKAPQLLLLDADI-----------EDKDEQAEALEEL---PETLE------ 316
DE + PGH+CK + L +K Q + LEE PE ++
Sbjct: 365 DEAWFPGHQCKVKKALNALLLEEEEYEGTEEVGREKKAQEKVLEETEHAPEEIDQEELMY 424
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
VS A+ GAT +T + + L+DS S F++ A + CP+ +T +V
Sbjct: 425 VSQNAMQGATRPDTFSVIIQINGRRAVGLVDSGSPSTFMDQEYAIRNDCPLVSTDSKKVV 484
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
VA GG + S + + QG F F L+P+ G DI+LGA+W+ I D K
Sbjct: 485 VAGGGELKSEVQVPDILYQIQGETFSNKFNLIPLKGYDIILGADWIYKYSPITLDLKKRE 544
Query: 437 MQFTWKGQTVQLTGY-DSLPPALANHGEINQLLLQEKQGIFFQIMAIT 483
+ T + + L + ++ L + ++++++ + G FQI +
Sbjct: 545 LGITKGEKVITLQDFTNTGKHLLVDSSKVDKIIRKGGLGYLFQITQVA 592
>gi|218200076|gb|EEC82503.1| hypothetical protein OsI_26980 [Oryza sativa Indica Group]
Length = 471
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%)
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
AE + E +SL AL+GA NT+RL+ ++ + +L+DS S+H FL+ + A+ G
Sbjct: 17 AEEDSDQDENCHISLNALSGANHVNTIRLRALVQNKVLLLLVDSGSSHSFLDYNFAQLLG 76
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS 424
+ F V VA+G I QG F D ++P+ G D +LG +WL
Sbjct: 77 LQLQPIAPFLVKVANGDCIPCQFVVPQFTWWFQGRTFTYDMRVVPLGGHDAILGMDWLAQ 136
Query: 425 LGAILWDFSKLTMQFTWKGQTVQLTGYDSLP 455
G + +++K T++F ++G V+L G P
Sbjct: 137 WGDMSCNWAKKTLKFMYQGTWVELQGVPDSP 167
>gi|147806355|emb|CAN67624.1| hypothetical protein VITISV_037284 [Vitis vinifera]
Length = 921
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 347 DSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFF 406
D STH F++ ++ +G P+ +FQV VA+ I G C V ++ QG D++
Sbjct: 209 DGGSTHNFIDQAIVTXHGLPIIPAKKFQVMVANXEKIXCVGLCPTVTISIQGKSITADYY 268
Query: 407 LLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
+LPVS C +VLG +WL +LG I D+ KLTM +
Sbjct: 269 VLPVSXCQLVLGVQWLETLGPIEMDYKKLTMTY 301
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRP 223
LPE+F + CF++GLR+ I++ ++ +P L +AR EE + + P SRP
Sbjct: 90 LPEAFLVGCFITGLRDXIRLDXKIKQPKVLAYAIGVARLIEEGNQLQRKLNYP----SRP 145
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPP-------PGLPP--FRRLSVAEQTERRAKGLCF 274
P + + ++ G +S +L PPP + P FR ++ E ERR K LC+
Sbjct: 146 QPVI-----STSRAGPNSTSGVLSPPPNQRGSQSANVNPNTFRXITNQEARERREKRLCY 200
Query: 275 NCDEQFKP 282
CD++F P
Sbjct: 201 YCDDKFVP 208
>gi|38344579|emb|CAE05537.2| OSJNBa0053B21.11 [Oryza sativa Japonica Group]
Length = 1251
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 264 QTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALT 323
Q + K C+ C E + H+CK +++ + E E +
Sbjct: 268 QGVEKEKKTCWYCKEPWNYQHKCKVGKVVHM------------MEEVEEEEEPQETQEEN 315
Query: 324 GATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI 383
G T T + L+DS ST+ F+N A + GC + ++ VA GG+I
Sbjct: 316 GETGYQTA------PRRRAVALVDSGSTNSFMNYDFAIKSGCEILEAGNRRILVAGGGMI 369
Query: 384 SSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKG 443
SSS K + QG F F L+P+ G D++LGA+W+ I D + + T KG
Sbjct: 370 SSSTKTEQLSYTVQGHPFERVFQLIPLKGFDVILGADWIYDHSPISLDLKQRVLWVTCKG 429
Query: 444 QTVQLTGYDSLPPA--LANHGEINQLLLQEKQGIFFQIMAIT 483
Q V+ + +LP + G+ ++L + G F ++++ T
Sbjct: 430 QQVKFVDH-TLPQGKIMIKAGKFGKMLDKGIMGFFIEVLSKT 470
>gi|449450213|ref|XP_004142858.1| PREDICTED: uncharacterized protein LOC101220049 [Cucumis sativus]
Length = 250
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 65/129 (50%)
Query: 306 EALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
E ++ +E+ +K++ G T TM+++G ++ V +L+D +T F++ L
Sbjct: 2 EVQNDIEGVVELCIKSVVGLTNVGTMKIRGEIQGKEVIVLVDCGATQNFISDKLVATLQL 61
Query: 366 PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSL 425
P T+ + V + G I G C V +N G+ DF L + G D++LG +WL SL
Sbjct: 62 PTKDTSNYGVILGSGTAIKGKGVCEQVKLNLNGWMITTDFLPLELGGVDVILGMQWLYSL 121
Query: 426 GAILWDFSK 434
G D+ K
Sbjct: 122 GVTEVDWKK 130
>gi|449463685|ref|XP_004149562.1| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like
[Cucumis sativus]
Length = 787
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 128/304 (42%), Gaps = 36/304 (11%)
Query: 112 LSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFIS 171
+++AI +G A+ WY E+ + W K ++ +F + +G G F
Sbjct: 110 MTVAIISFEGTALNWYRSHEERDKFVDWVNLKERVLVRFRSTREGSLYG------RFLRI 163
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
+ + E + +++ P S L +E+ +N +P + N +
Sbjct: 164 QHTTTVEEYRNLFDKLVAPLSDLADKVKVENREDIRREAN--LPGYSGAKLSNSGSGNKT 221
Query: 232 PTITKTGGS-----------SQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
T +G S + G P +RLS A+ R+ KGLCF C+E++
Sbjct: 222 STFGNSGESKGNWNWPMRTITLRGTAGEEVRETGPTKRLSDAKFQSRKEKGLCFRCNEKY 281
Query: 281 KPGHRCKAPQ-----LLLLDADIEDKDEQ------------AEALEELPETLEVSLKALT 323
H+CK + +L++ D E+ + AE ++E +E+S+ ++
Sbjct: 282 SHDHKCKMKEQRELRMLVVMGDNEEYEIIEEEEVEQKELNVAEVIQEEQAVVELSINSVV 341
Query: 324 GATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI 383
G + TM++KG L + +LID +TH F++ SL ++ +TT + V + G I
Sbjct: 342 GLSNPGTMKVKGKLLGKEIIVLIDCGATHNFISESLVEELQISTKSTTNYGVILGSGTAI 401
Query: 384 SSSG 387
G
Sbjct: 402 KGKG 405
>gi|224152695|ref|XP_002337260.1| predicted protein [Populus trichocarpa]
gi|222838644|gb|EEE77009.1| predicted protein [Populus trichocarpa]
Length = 339
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 126/270 (46%), Gaps = 57/270 (21%)
Query: 4 KELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRF-------QEDRNNNQ--- 53
K+LEER++ + +F E+ S++++ + I +L QF F +E +N++
Sbjct: 10 KKLEERIQIMQQEFQEQ----SKKTDQISVQIETLSSQFQAFLAHHVTEKEMGSNSKGIL 65
Query: 54 -------PLQINNQQPEPAGRIGGALVQPRHI-------RLDFLVLSGENPTSLIFRCEQ 99
P +N++ PA +P+ R+D G+NP + RC +
Sbjct: 66 QTPTRGNPEGMNSRGKGPARGDANYGQEPQRAMFNTGFPRMDLTTFRGDNPRGWLRRCNK 125
Query: 100 YQRLAALLETDVLSLAIGHLDGDAVPWYH-WLEQTMGNMTWAQFKRALVTQFGTFED--- 155
+ +L A + +A +L+G A W+ ++ ++ W +F +A+ ++FG+ +D
Sbjct: 126 FFKLNATPWQQWVEIASLYLEGKAEIWFEGYMCGLDVSLEWEEFSKAICSRFGSRDDIVE 185
Query: 156 -----GDAVGTQN------------------LPESFFISCFLSGLREDIKIGVQMLKPAS 192
G + LPES++IS F+SGL+EDIK +++LKP +
Sbjct: 186 EFNKLTQEGGMEEYVERFEELKSLMHSLNPLLPESYYISSFISGLKEDIKPMLKILKPGT 245
Query: 193 LLQTFELARFQEEYAAVSNR--RIPPRPSM 220
L+ F+ A++QEE + R R +P M
Sbjct: 246 LMTAFDQAKWQEESNNILARKSRFTTKPVM 275
>gi|255555239|ref|XP_002518656.1| conserved hypothetical protein [Ricinus communis]
gi|223542037|gb|EEF43581.1| conserved hypothetical protein [Ricinus communis]
Length = 177
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%)
Query: 309 EELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVT 368
EE E + VS AL NT+ +KG ++ V L++S STH FL++ + ++ C +
Sbjct: 30 EEDDEFINVSYHALGAHKSLNTVVVKGLVENQHVLNLLNSGSTHSFLHNRVVEKLNCNLV 89
Query: 369 TTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAI 428
T F V+ G + S+ KC + F +F LL + D+VLGA+W+RS +
Sbjct: 90 QATPFCVSTGGGNKLISNQKCLNFEWKMNNLSFSFNFRLLNIDEYDLVLGADWMRSFNHV 149
Query: 429 LWDFSKLTMQF 439
+DF K + F
Sbjct: 150 YFDFCKNKLPF 160
>gi|77551695|gb|ABA94492.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 306
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ-FQ 374
VSL AL+ NTMRL + V LIDS STH F+++ LA + +
Sbjct: 169 RVSLSALSVVGGDNTMRLPVMIDGLRVVSLIDSGSTHNFIHTELAHHLRLRLEPVRDGLR 228
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEW--LRSLGAILWDF 432
V VA+G I S G+C ++P+ G F +D F L + DI+LG EW L++LG +LWDF
Sbjct: 229 VVVANGDRIVSPGRCHNLPLLIDGEIFRVDCFALDLCAVDIILGTEWLQLQTLGPVLWDF 288
Query: 433 SKL 435
+
Sbjct: 289 KNI 291
>gi|449460756|ref|XP_004148111.1| PREDICTED: uncharacterized protein LOC101204313 [Cucumis sativus]
Length = 501
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 63/328 (19%)
Query: 16 QFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRI------- 68
Q E+++ ++ L+E+IL R ++ N + ++ G +
Sbjct: 5 QIEERIDGTEKEIMGLKEMILETKKSMDRLADEMKENSSYKRRDESGTSDGSVMKLKGKA 64
Query: 69 -------GGALV---QPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGH 118
G L + ++ +L+ + GENP S ++R E + + L ET+ + +A+
Sbjct: 65 EETDVHNEGNLTMGDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVS 124
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRAL------------------VTQFGTFED----- 155
D V WY W +W K + + Q G++ D
Sbjct: 125 FGQDEVDWYRWSHNRRKVESWEDLKERMFDFFKDTGQKSLVARLIRIEQDGSYNDYVKKF 184
Query: 156 -GDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI 214
+ ++ ES FL+GL +++ V P +L + A+ V++R +
Sbjct: 185 VNYSAPLPHMTESVLRDAFLTGLEPNLQAEVVSRNPLTLEECMREAQL------VNDRNL 238
Query: 215 PPRPSMS-------RPSPPLLNSSPTITKTGGSSQPS---------LLGPPPPGLPPFRR 258
+ S + + N P + G + + + G PP +R
Sbjct: 239 ALQWSKAEGGGRNYKKGEGSTNKGPEGGEKGITRKTEFPLKQVTIPIKGNYQKSEPPVKR 298
Query: 259 LSVAEQTERRAKGLCFNCDEQFKPGHRC 286
LS AE R KGLCF C+E++ PGHRC
Sbjct: 299 LSDAEFRARLDKGLCFKCNERYSPGHRC 326
>gi|77551120|gb|ABA93917.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1091
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 147/371 (39%), Gaps = 70/371 (18%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P RCE Y + + +A + G A W +
Sbjct: 29 KLDFPRFDGTDPQDRQMRCEHYFDVNNTYPGLWVRIATIYFSGRAASWLRSSRAHVRFPG 88
Query: 139 WAQFKRALVTQF------------------GT----FEDGDAVGTQ------NLPESFFI 170
W +F A+ T+F GT +E D + Q + +
Sbjct: 89 WGEFCHAVSTKFDMDQHELLIRQMDAIKQVGTVWEYYEKFDELMNQLLVYDPGVSMKYLT 148
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEY-------------AAVSNRRIPPR 217
F GL +I+ V + +P L +A QEE + SN +
Sbjct: 149 HRFTEGLHREIRNVVILQRPRDLESALVVASLQEEVLDSNTISGTKEFKKSDSNFQFKSN 208
Query: 218 PSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFR------RLSVAEQTERRAKG 271
P++ P L P +GG + L G R ++SV + +RRA+G
Sbjct: 209 PTLKGALP--LPFPPGRVMSGGGKE--LKNDDRKGTENSRIMAGNDKMSVL-KAQRRAQG 263
Query: 272 LCFNCDEQFKPGHRC-------KAPQLLLL----DADIEDKDEQAEALEELPETLEVSLK 320
LC+ C E++ P H+C +L L ++++ +EQ E +L + +SL+
Sbjct: 264 LCYICAEKWSPTHKCANSVQLHSVQELFALFQHQESELLAPEEQHEQESQL---MAISLQ 320
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG 380
A+ TMRL G+L+ V IL+DS S+ F++S +A Q + V VA+G
Sbjct: 321 AIQRIESAGTMRLLGSLQGKEVLILVDSGSSANFMSSKMADQQTGLQQLQSTVSVQVANG 380
Query: 381 GVISSSGKCSH 391
GV+S C H
Sbjct: 381 GVLS----CRH 387
>gi|449445212|ref|XP_004140367.1| PREDICTED: uncharacterized protein LOC101210426 [Cucumis sativus]
Length = 497
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 132/338 (39%), Gaps = 58/338 (17%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPR------ 217
+ ES I F++GL ++K+ V P +L A+ VS+R + +
Sbjct: 1 MAESVLIDSFVTGLETNLKVEVLSRHPVTLEDCMREAQM------VSDRDLAIKLALNEC 54
Query: 218 ----PSMSRPSPPLLNSSPTIT---KTGGSSQPSL--LGPPPPG-----LPPFRRLSVAE 263
P S + TI K G S+ + + P G +RLS +E
Sbjct: 55 GSNGPRASEAQTQMEKKKMTINAEKKEGKGSEYVMKQVSIPIKGNYSREETSVKRLSDSE 114
Query: 264 QTERRAKGLCFNCDEQFKPGHRCKAP---QLLLLDADIEDKDEQAEALEELPETLEVSLK 320
R KGLCF C+E++ PG CK +L+ A+ E+ +E E ET+E+
Sbjct: 115 FRARLDKGLCFRCNEKYSPGQWCKGKTNCELMFFIANEEELEEVNGKEEGELETVEL--- 171
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG 380
T+ ++G T I L + L G T+F VT+ DG
Sbjct: 172 --------ETLEIEGK--------------TEIALRTIL----GLHQKEKTKFGVTIGDG 205
Query: 381 GVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
+ G C V V + DF + + D+VLG +WL + G + + +TM F
Sbjct: 206 TALEGKGVCKRVEVKLPELKIVADFLAIKLGRIDVVLGMQWLSTTGFMGVHWPTMTMTFM 265
Query: 441 WKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQ 478
V L G S+ + I++ E QG +
Sbjct: 266 AGTTQVILKGDPSITKTECSLKTISKTWEIEDQGFLME 303
>gi|449479939|ref|XP_004155753.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 426
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 21/225 (9%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP---QLLLLDADIEDKDEQAEALEELPE 313
+RLS +E R KGLCF C+E++ PG CK +L+ A+ E+ +E E E
Sbjct: 20 KRLSDSEFRARLDKGLCFRCNEKYSPGQWCKGKTNCELMFFIANEEELEEVNGKEEGELE 79
Query: 314 TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQF 373
T+E+ + G T + G F + + + V T+F
Sbjct: 80 TVELETLEIEGKTEIALRTILG------------------FTSKGVINELNLLVEEKTKF 121
Query: 374 QVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFS 433
VT+ DG + G C V V + DF + + D+VLG +WL + G + +
Sbjct: 122 GVTIGDGTALEGKGVCKRVEVKLPELKIVADFLAIKLGRIDVVLGMQWLCTTGFMGVHWP 181
Query: 434 KLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQ 478
+TM F V L G S+ + I++ E QG +
Sbjct: 182 TMTMTFMAGTTQVILKGDPSITKTECSLKTISKTWEIEDQGFLME 226
>gi|147815400|emb|CAN65491.1| hypothetical protein VITISV_003157 [Vitis vinifera]
Length = 1242
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 9/102 (8%)
Query: 255 PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP-QLLLLDADIEDKDEQAE------- 306
P +RL+ +E RR KG+CF CDE+F GHRCK ++LL+ D ++D Q +
Sbjct: 177 PIKRLTESELQARREKGICFKCDEKFSLGHRCKKELRVLLVHEDEREEDNQFDERATMEP 236
Query: 307 ALEELPETLEVSLKALTGATPQNTMRLKGNL-KKHGVTILID 347
+L EL + +E+SL ++ G T TM++KG + K G+T++ D
Sbjct: 237 SLIELKDAMELSLNSVVGLTTPGTMKIKGTIGSKEGLTVVED 278
>gi|41469119|gb|AAS07070.1| putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 987
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/415 (20%), Positives = 158/415 (38%), Gaps = 112/415 (26%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWY-----HWLEQT 133
RL+ + GE+P + +CE++ + ++LA+ HL G A+ + H +
Sbjct: 191 RLEIPLFGGEDPIDWLKQCEKFYEITGTPMDQWVNLALAHLQGRALKLFSAADVHEAVEL 250
Query: 134 MGNMTWAQFKRALVTQFGTFEDGDAVGTQNLP---ESFFISCFLSGLREDIKIGVQMLKP 190
N+ Q+ +++ FE+ + ++ P E + SCF+ LR DIK V KP
Sbjct: 251 FQNVK--QYNQSVEQYIDKFEEYVDLVRRDHPCLQELYLNSCFIGELRGDIKHDVCGYKP 308
Query: 191 ASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGS-SQPSLLGPP 249
LL+++ A+ E+ A + R++ + ++P + TGG+ S+ ++ P
Sbjct: 309 QGLLESYWYAKNYEK--AANARKVALNWNKNKP----------LIHTGGNQSRANMTKAP 356
Query: 250 PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALE 309
P G E++ C+ C E + GH+CK
Sbjct: 357 PRG-----------NGEKK----CWFCKEAWFSGHQCK---------------------- 379
Query: 310 ELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTT 369
G T ++T + + L+DS ST F++ A + CP+
Sbjct: 380 --------------GTTRRDTFSVIILINGKRAVGLVDSGSTSTFMDQEYAIRNQCPLVN 425
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
T + G D++LGA+W+ + I
Sbjct: 426 TESKK-------------------------------------GYDVILGADWIYNYSPIT 448
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSL-PPALANHGEINQLLLQEKQGIFFQIMAIT 483
D K + T +T+ + + L L + ++++L + G FQI +T
Sbjct: 449 LDLKKRELGITKGEKTIMIQDFTKLGKHMLVDSKRVDKILKKGGLGYLFQISQVT 503
>gi|108708832|gb|ABF96627.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 999
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/415 (20%), Positives = 158/415 (38%), Gaps = 112/415 (26%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWY-----HWLEQT 133
RL+ + GE+P + +CE++ + ++LA+ HL G A+ + H +
Sbjct: 191 RLEIPLFGGEDPIDWLKQCEKFYEITGTPMDQWVNLALAHLQGRALKLFSAADVHEAVEL 250
Query: 134 MGNMTWAQFKRALVTQFGTFEDGDAVGTQNLP---ESFFISCFLSGLREDIKIGVQMLKP 190
N+ Q+ +++ FE+ + ++ P E + SCF+ LR DIK V KP
Sbjct: 251 FQNVK--QYNQSVEQYIDKFEEYVDLVRRDHPCLQELYLNSCFIGELRGDIKHDVCGYKP 308
Query: 191 ASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGS-SQPSLLGPP 249
LL+++ A+ E+ A + R++ + ++P + TGG+ S+ ++ P
Sbjct: 309 QGLLESYWYAKNYEK--AANARKVALNWNKNKP----------LIHTGGNQSRANMTKAP 356
Query: 250 PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALE 309
P G E++ C+ C E + GH+CK
Sbjct: 357 PRG-----------NGEKK----CWFCKEAWFSGHQCK---------------------- 379
Query: 310 ELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTT 369
G T ++T + + L+DS ST F++ A + CP+
Sbjct: 380 --------------GTTRRDTFSVIILINGKRAVGLVDSGSTSTFMDQEYAIRNQCPLVN 425
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
T + G D++LGA+W+ + I
Sbjct: 426 TESKK-------------------------------------GYDVILGADWIYNYSPIT 448
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSL-PPALANHGEINQLLLQEKQGIFFQIMAIT 483
D K + T +T+ + + L L + ++++L + G FQI +T
Sbjct: 449 LDLKKRELGITKGEKTIMIQDFTKLGKHMLVDSKRVDKILKKGGLGYLFQISQVT 503
>gi|77554116|gb|ABA96912.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 382
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPS-------- 219
+F++ F+ GL+++I+ V + KP L +A QEE N++I R +
Sbjct: 140 YFLTKFVDGLKDEIRGVVMIQKPVDLDAACSVAMLQEEILD-GNKKISFRKAEGTSFTKA 198
Query: 220 MSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQ 279
+RP + + G + P +L ++ RR+KGLCF E+
Sbjct: 199 FTRPVQGTVCQKSPVATPGEEKRILESARTTPKDDKVSQL----RSYRRSKGLCFTHGER 254
Query: 280 FKPGHRC-KAPQLLLLDADIEDKDEQAEALEELPET-------LEVSLKALTGATPQNTM 331
+ H+C + QL +++ + +E+ ++LE + E+ + +S+ A G +++
Sbjct: 255 WSKDHKCAQTVQLHVVELEAFQLEEETDSLETILESNPEENNLMTISVHAWNGTDSAHSL 314
Query: 332 RLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
R+KG ++ + +LI+S STH F++ + + V+TT +V VAD
Sbjct: 315 RVKGLIQGTELLMLINSGSTHSFVDEQMIHHFPGVVSTTPPVKVRVAD 362
>gi|297724521|ref|NP_001174624.1| Os06g0170800 [Oryza sativa Japonica Group]
gi|215766712|dbj|BAG98940.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676759|dbj|BAH93352.1| Os06g0170800 [Oryza sativa Japonica Group]
Length = 263
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 5/173 (2%)
Query: 315 LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
+ +SL+A+ G +T+RL+G+++ V IL+DS S+ FL+S + + T Q
Sbjct: 1 MAISLQAIQGTVSAHTLRLQGSIQGFDVLILVDSGSSCSFLSSVVLPHLTGVKSLLTPVQ 60
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
V VA+G V+S + + QG QF DF LLP+ D++LG +WL + ++
Sbjct: 61 VKVANGAVLSCTSELPAAKWEVQGHQFSTDFKLLPLDNYDMILGMDWLEKYSPMDINWQA 120
Query: 435 LTMQFTWKGQTVQLTGYDSLPPAL--ANHGEINQLLLQEKQGIFFQIMAITTS 485
T+QF ++V+L G + P L + I+QL L QG ++ +T S
Sbjct: 121 KTIQFGLLDKSVELKG---VVPELDKCDLVSIHQLQLLHNQGAVESLVQLTAS 170
>gi|255574763|ref|XP_002528289.1| hypothetical protein RCOM_0456620 [Ricinus communis]
gi|223532289|gb|EEF34091.1| hypothetical protein RCOM_0456620 [Ricinus communis]
Length = 247
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQL-LLLDADIED--KDEQAEALE---- 309
+ ++ E+RAK L F DE+F GH+CK QL +++ DI + K+ E +
Sbjct: 101 KEMNEKRAXEKRAKNLYFWYDERFVLGHQCKKKQLYMVIVQDIMENGKEPLGEQIHWDNF 160
Query: 310 ELPETL-EVSLKALTGAT--PQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCP 366
+L ET +SL A+ G T++L GN ++ + ILI S +TH FL+ L K C
Sbjct: 161 DLEETAPTISLYAMRGVEDLAYQTIKLIGNCRRKAIHILIGSVNTHKFLDRGLIKGLSCS 220
Query: 367 VTTTTQFQVTVADGGVISSSGKCSHVP 393
+ Q+T+A+G +S + C P
Sbjct: 221 LKLIDPVQITIANGQEVSCTHMCEQFP 247
>gi|296090255|emb|CBI40074.3| unnamed protein product [Vitis vinifera]
Length = 206
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRP 223
L E FF+ CF+SGL E IK V M + +L QT LA QE + +
Sbjct: 17 LLEEFFVQCFISGLNEAIKNQVTMFRSNTLAQTMGLALLQEGTMEAILKEVKASNE---- 72
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
+ T+ G + LPP +R+S + +R K LC+ CDE+++P
Sbjct: 73 -----SEESTVNSMG------IRMNQNTQLPPIKRISATKIQDRWDKSLCYYCDERYEPS 121
Query: 284 HRCKAPQLLLLDADIEDKDEQAEALEELPE--TLEVSLKALTGATPQ 328
H+ K Q+ LLD E K E L+ + L++ LK A Q
Sbjct: 122 HKYKRKQIFLLDGH-ESKVEAIVKLKIISRRMILKIKLKRNNKAVVQ 167
>gi|222628386|gb|EEE60518.1| hypothetical protein OsJ_13847 [Oryza sativa Japonica Group]
Length = 218
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 256 FRRLSVAEQTERRAKGLCFNCDEQFKPGHR--CKAPQLLLLDADIEDKDEQAEALEELPE 313
RRL+ +E ERR K LC NCDE + GH CK LL L D +++DE PE
Sbjct: 91 VRRLTPSEIDERRRKVLCINCDETYSRGHNKVCKCLFLLDLAYDDDEEDEGDTTPAADPE 150
Query: 314 TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQF 373
TL + L A+T P N M L L + L+D STH FL+ A + P+
Sbjct: 151 TLRIFLHAVTCVRPSNAMHLSIRLGDATLHALVDMGSTHNFLSQESAARVRLPLIQRAGL 210
Query: 374 QVTVADG 380
VTVA+G
Sbjct: 211 HVTVANG 217
>gi|449490958|ref|XP_004158759.1| PREDICTED: uncharacterized protein LOC101229900 [Cucumis sativus]
Length = 1408
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 104/264 (39%), Gaps = 55/264 (20%)
Query: 70 GALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHW 129
GA + + +++ V +GE+P S +FR ++Y ++ L + + + +A +G A+ WY
Sbjct: 1094 GANERDKFKKVEMPVFNGEDPDSWLFRADRYFQIHKLSDAEKVLVATISFEGPALNWYRA 1153
Query: 130 LEQTMGNMTWAQFKRALVTQFGTFEDGDAVGT------------------------QNLP 165
E W K L+ +F + +G G +L
Sbjct: 1154 QEHNKFT-GWPNLKERLLVRFRSSREGSICGQFLRIKQQTTVEEYRNEFDRLMAPLADLQ 1212
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAV----------SNRRIP 215
+ F++GL IK V KP L + A+ E + + + P
Sbjct: 1213 DRVVEETFMNGLFPWIKAEVVFCKPVGLAEMMHAAQLVENREIIRKEANLNGYATGKYPP 1272
Query: 216 PRPSMSRPSPPLLNS-----------SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQ 264
P S+ + S + NS + T+ T G + P +RL AE
Sbjct: 1273 PNSSIIKSSAAMNNSENQGNTIFPMRTVTLRTTAGEFKKE---------GPTKRLPDAEF 1323
Query: 265 TERRAKGLCFNCDEQFKPGHRCKA 288
R+ KGLCF C+E++ GHRC+
Sbjct: 1324 QARKEKGLCFRCNEKYFHGHRCRG 1347
>gi|108862432|gb|ABA97314.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1219
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/435 (21%), Positives = 151/435 (34%), Gaps = 62/435 (14%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+LDF G +P RCE + + + +A + G A W + +
Sbjct: 152 KLDFPKFDGTDPEDWKMRCEHHFDVNNTFPGLWIRIATIYFSGRAASWLRSSKAHVRFPV 211
Query: 139 WAQFKRALVTQFG----------------------TFEDGDAVGTQNLPES------FFI 170
W F A+ +F +E D + Q L +
Sbjct: 212 WENFCIAVSHKFDRDQHETLIRQMDSIKQTGIVWEYYERFDELMNQLLTYDPLLNMRYLT 271
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
F GL +I+ V + +P L +A QEE +S P++ + L
Sbjct: 272 HRFTEGLCREIRNTVLLQRPKDLENALAVAMLQEE--VISEATTGSVPNLKKSDGGNLQI 329
Query: 231 SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ 290
P + G PS PP R + N E K H +
Sbjct: 330 RPNVAFKGALPLPS-----PPN--------------RGSGSGVLNRSEDRKFLHNTET-- 368
Query: 291 LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
+ DK + L K G MR+ G ++ V IL+DS S
Sbjct: 369 -----GNSNDK------ISTLKAQRRAQFKLYKGFETVGCMRMLGYVQGKEVLILVDSGS 417
Query: 351 THIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV 410
T F+ S +A+ VT QV VA+G +++ +QG+ F+ D +L +
Sbjct: 418 TTSFITSKIAQTLQGVVTLEPPVQVKVANGSILTCLSSVLRCEWMTQGWVFYTDLKVLNL 477
Query: 411 SGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQ 470
DI+LG +WL + + D+ + +W+ ++ L G S + L L+
Sbjct: 478 GSYDIILGMDWLMAHSPMQVDWVNKLLTASWRKESNTLQGILSETEQCSQLSSQQFLELK 537
Query: 471 EKQGIFFQIMAITTS 485
++Q I I T S
Sbjct: 538 DRQAISHLIQLCTLS 552
>gi|38347369|emb|CAE04959.2| OSJNBa0070D17.10 [Oryza sativa Japonica Group]
Length = 730
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 110/298 (36%), Gaps = 68/298 (22%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPW------YHWLEQ 132
RL+ + GE+P + +CE++ + ++LA+ HL G A+ W Y +E
Sbjct: 191 RLEIPLFGGEDPIDWLKQCEKFYEITGTPMDQWVNLALAHLQGRALKWFSAADVYEAVEL 250
Query: 133 TMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPAS 192
+ Q + +F + D L E SCF+ GLR DIK V KP
Sbjct: 251 FQNVKQYNQSVEQYIDKFEEYVDLVRRDHPYLQEQSLNSCFIGGLRGDIKHDVCGHKPQG 310
Query: 193 LLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPG 252
LL+++ A+ Y +N R + + + P I G S+ ++ PP G
Sbjct: 311 LLESYWYAK---NYKKAANAR--------KVALNWNKNKPLIHTGGNQSRANMTKAPPRG 359
Query: 253 LPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELP 312
+ C+ C E + P H+CK P
Sbjct: 360 ---------------NGEKKCWFCKEAWFPRHQCKG--------------------TTRP 384
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+T V + N R G L+DS ST IF++ A + CP+ T
Sbjct: 385 DTFSVIILI-------NGKRDVG---------LVDSGSTSIFMDQEYAIRNQCPLVNT 426
>gi|255573324|ref|XP_002527589.1| conserved hypothetical protein [Ricinus communis]
gi|223533028|gb|EEF34791.1| conserved hypothetical protein [Ricinus communis]
Length = 322
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 60/268 (22%)
Query: 11 EQLSHQFNEKVEVLSQQSN----DLQELILSLHDQ----------------FIRFQEDRN 50
E ++ N++ E++ QQ N +L+ L+LS H FI +
Sbjct: 36 EMVTEMINKQSELMGQQQNTIVNELKALLLSSHPAPTFPTPINPTVLPNPPFINLSSSQT 95
Query: 51 NNQ----PLQINNQQP--EPAGRIG-GALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRL 103
P I+ QP IG G + R +++ +GE+ +F+CE++ ++
Sbjct: 96 IPTAIPTPTYIDLSQPTIHTQAAIGNGYQMATRFTKIESPTFNGEDLEGWLFKCERFFQI 155
Query: 104 AALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFG--TFEDGDA--- 158
L + LA H++G A+ +G W ++ AL +FG +ED A
Sbjct: 156 DYTLLMARMKLASIHMEGRAL-------NKLGEPPWEEYVLALKGRFGEKAYEDPMADLK 208
Query: 159 ----VGT--------------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELA 200
GT L E + +SCFLSGL+E+I+I ++ML P SL Q + LA
Sbjct: 209 GLIQTGTLQEYMESFEVLSHKVTLSEDYSLSCFLSGLKEEIRIPLRMLGPKSLQQAYALA 268
Query: 201 RFQEEYAAVSNRRIPPRPSMSRPSPPLL 228
R Q+ Y + + +P + P P++
Sbjct: 269 RMQDSYLSATKTI---KPIIINPKQPVI 293
>gi|326497069|dbj|BAK02119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Query: 312 PETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT 371
PE +S AL+G +T+RL+ + + LIDS STH F++ + A + P+ T
Sbjct: 30 PECCSLSPHALSGEEAPSTIRLRAQVGDQVMLFLIDSGSTHSFVSKAFATRLSVPMVTLP 89
Query: 372 QFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWD 431
V +A+ + + G FH D +L + D VLG +WL +
Sbjct: 90 AVSVHMANSQRLRCDSMVQQLTWQVPGHTFHTDLRVLELGAYDGVLGMDWLSRHSPMNCH 149
Query: 432 FSKLTMQFTWKGQTVQLTGYDS--LPP 456
+ + T+ F +G+ VQL G S LPP
Sbjct: 150 WLEKTISFQTEGKVVQLQGIRSSDLPP 176
>gi|77554606|gb|ABA97402.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 692
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/412 (23%), Positives = 154/412 (37%), Gaps = 126/412 (30%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R +DF G+ S I + E+Y L E D + LA H+ G A W L
Sbjct: 186 RSRNVDFPTFEGDYLESWIRKAEKYFSLYQTPEEDKVLLAEVHISGRADQWIESLAIATA 245
Query: 136 NMTWAQFKRALVTQFGT-------------------------FEDGDAVGTQNLP---ES 167
+++W +FK L +F FED + ++ P +
Sbjct: 246 SLSWPEFKTMLCQRFAAKSKIEITETFRNLKQYGSVDSYIDKFEDTMTLVKRSNPTLTKD 305
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPL 227
+F+ F+SGL+++IK ++ L SL+ +E AR N + PR + +
Sbjct: 306 YFLDYFISGLKDNIKRPLKSLSIYSLVTAYEHAR---------NYDVIPRSANT------ 350
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQ---TERRAKGLCFNCDEQFKPGH 284
+S P+ KT P +PP + + +Q T + G F C+E + PGH
Sbjct: 351 -SSVPSNRKT-------------PKIPPKQPIKDNKQSAVTHTKFSGKYFRCNEPWVPGH 396
Query: 285 --RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV 342
CKA + + L +ED ++E L++ + T +PQ T
Sbjct: 397 GRVCKATKQVYL-VTMED---ESEILDDAAYS--------TPDSPQKT------------ 432
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
D TH+ L+S + P TT V
Sbjct: 433 ----DQQDTHLLLHS---LEGTTPAATTFTLYVL-------------------------- 459
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSL 454
LDF LL + G DI+ G +W ++ S +T+ + T+ G S+
Sbjct: 460 LDFRLLDLKGFDIIFGCDW-------IYQHSPITIDLKTRAFTIHHNGMQSI 504
>gi|449443978|ref|XP_004139752.1| PREDICTED: uncharacterized protein LOC101213746 [Cucumis sativus]
Length = 431
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 294 LDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHI 353
D + E + + E +E + +E+S+ ++ G + TM+LKG +K+ V I+IDS +TH
Sbjct: 13 FDVETEAQTIEIEKVENM--NIELSINSIVGLSNPGTMKLKGKIKERKVVIIIDSGATHS 70
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F+ + P+T T+ + V + G + G S+V V
Sbjct: 71 FIAKNFVTTLSLPMTETSNYGVILGSGVAVKGKGIRSNVEVTG----------------- 113
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
WL LG +D L M F G+ +++ G
Sbjct: 114 -------WLHKLGMTEFDMKNLVMTFRHGGRKIEIKG 143
>gi|284434534|gb|ADB85289.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 397
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 295 DADIEDKDEQAEALEELPET-----------------LEVSLKALTGATP-QNTMRLKGN 336
D D E+++E +A EL +T L++S+ A+ G + NT L
Sbjct: 130 DQDSENEEEGRDASGELEDTQYKTPPSSPEHQKKETVLQISMHAVQGTSSVSNTFTLTLK 189
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNS 396
+ VT L+DS S+ F+N L + C + T +V +AD ++ S C
Sbjct: 190 IGGVKVTALVDSGSSATFVNPKLVTKIPCEIVNHTAIRVMIADRRLMGSDTLCQGCKYEI 249
Query: 397 QGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPP 456
QG +F D +LP+ G ++ GA+W+ + I + T G Q+T D P
Sbjct: 250 QGEKFSSDMRVLPLRGYHVIFGADWICTHNPIGLNLRAREFSITKHG-VKQITFKDETQP 308
Query: 457 ALANHGEINQLLLQEKQGIFFQIMAITTS 485
+ +NQL K+G+ ++ T+
Sbjct: 309 DQNSIISLNQLPKLMKKGVVGAVIYAHTN 337
>gi|449443680|ref|XP_004139605.1| PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis sativus]
Length = 880
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 134/341 (39%), Gaps = 64/341 (18%)
Query: 2 TIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSL---HDQFIRFQEDRNNNQPLQIN 58
++ E+E+RVE + E++ + + +I L H + + ++ L++
Sbjct: 510 SLTEIEDRVEGTEKEIMSLKEMMLEMKKSMDRMIGELRENHGAKKKEEAGTTDDIRLKLK 569
Query: 59 NQQPEPAGRI---GGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLA 115
+ E + G + + ++ +L+ + +G N S +R E + + L E + + +A
Sbjct: 570 GKLEEAGTTVESGGSSADRSKYKKLEMPLFTGVNTESWAYRAEHFFDINDLPEAEKVKVA 629
Query: 116 IGHLDGDAVPWYHWLEQTMGNMTWAQFKRAL------------------VTQFGTF-EDG 156
+ + V WY W +W K + + Q G++ E
Sbjct: 630 VVSFGQEEVDWYRWTHNRKKVESWEDLKGRMFDFFKDSGQTSLVARLIRIQQDGSYSEYV 689
Query: 157 DAVGTQNLP-----ESFFISCFLSGLREDIKIGV---------QMLKPASLLQTFELA-- 200
T + P ES FL+GL +++ V ++ A L+ +A
Sbjct: 690 KKFVTYSAPLPHMEESVLRDAFLTGLEPNLQAEVVSRFPRTLEDCMREAQLVNDRNVAMK 749
Query: 201 -----------RFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPP 249
+ +EEYA + + M R P+ + I GS Q S
Sbjct: 750 LTKNEGRTVEPKKKEEYAG-KIQDGTDKGYMRRTDFPIKQVTIPIK---GSYQKSE---- 801
Query: 250 PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQ 290
PP +RLS AE R KGLCF C+E++ PGHRC+ +
Sbjct: 802 ----PPIKRLSDAEYRSRLDKGLCFKCNEKYTPGHRCRVKE 838
>gi|18921319|gb|AAL82524.1|AC084766_10 putative polyprotein [Oryza sativa Japonica Group]
gi|108708440|gb|ABF96235.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 896
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 68/282 (24%)
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSP 232
F+ GL+E+I+ + + P ++ Q +A QE S ++ + + + S P
Sbjct: 244 FILGLKEEIRSVLLVQLPDTVQQAAAIALVQESVLLDSGQKPLKKLTYKGVGTKVDTSVP 303
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL 292
S+PS + P L ++L + RRA G+CF C +++ P H+C +
Sbjct: 304 I-------SEPSAIKPERAELWKAKQL----KEYRRANGICFKCGDKYSPDHQCVITVVA 352
Query: 293 LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTH 352
D+D E E +SL AL+GA+ N +RL+ +
Sbjct: 353 EEDSDAE-------------EQYHISLNALSGASRHNAIRLRALV--------------- 384
Query: 353 IFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVN----SQGFQFHLDFFLL 408
Q VA+G +S C +V N QG F D ++
Sbjct: 385 ---------------------QNKVANGDFLS----CQYVVPNFTWWIQGQTFSYDLKVV 419
Query: 409 PVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+ G D +LG +WL G + +++ T++F ++ Q + L G
Sbjct: 420 QLGGHDAILGMDWLAQWGDMSCNWATKTLKFFYQDQWIALQG 461
>gi|356551468|ref|XP_003544097.1| PREDICTED: uncharacterized protein LOC100808479 [Glycine max]
Length = 600
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
V +G + C++V ++ QG F +DF ++ ++G D+VLG +WL+SLG IL ++S LT
Sbjct: 2 VRNGNELDCLHLCNNVSIHVQGHVFIVDFHVMSLTGADLVLGVQWLKSLGLILKNYSDLT 61
Query: 437 MQFTWKGQTVQLTG 450
MQF G+ +QL G
Sbjct: 62 MQFFHTGRVIQLQG 75
>gi|222630741|gb|EEE62873.1| hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]
Length = 463
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 70/312 (22%)
Query: 60 QQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHL 119
P R A R +DF G+ S I + E+Y L E D + LA H+
Sbjct: 170 HHPHYEHRPHYADPAKRSRNVDFPTFEGDYLESWIRKAEKYFSLYQTPEEDKVLLAEVHI 229
Query: 120 DGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGT-------------------------FE 154
G A W L +++W +FK L +F FE
Sbjct: 230 SGRADQWIESLAIATASLSWPEFKTMLCQRFAAKSKIEITETFRNLKQYGSVDSYIDKFE 289
Query: 155 DGDAVGTQNLP---ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSN 211
D + ++ P + +F+ F+SGL+++IK ++ L SL+ +E AR N
Sbjct: 290 DTMTLVKRSNPTLTKDYFLDYFISGLKDNIKRPLKSLSIYSLVTAYEHAR---------N 340
Query: 212 RRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQ---TERR 268
+ PR + + +S P+ KT P +PP + + +Q T +
Sbjct: 341 YDVIPRSANT-------SSVPSNRKT-------------PKIPPKQPIKDNKQSAVTHTK 380
Query: 269 AKGLCFNCDEQFKPGH--RCKAPQ---LLLLDADIEDKDEQAEALEELPETLE-----VS 318
G F C+E + PGH CKA + L+ ++ + E D+ A + + P+ + +
Sbjct: 381 FSGKYFRCNEPWVPGHGRVCKATKQVYLVTMEDESEILDDAAYSTPDSPQKTDQQDTHLL 440
Query: 319 LKALTGATPQNT 330
L +L G TP T
Sbjct: 441 LHSLEGTTPAAT 452
>gi|108862189|gb|ABA96448.2| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|215767578|dbj|BAG99806.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 649
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%)
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHL 403
+L+DS STH F++ + + V +ADGG +S + + ++ QG+QF
Sbjct: 5 MLVDSGSTHSFIDKEVGLKLSGIQKLKQPLIVRIADGGTMSCTHEITNCKWWMQGYQFCN 64
Query: 404 DFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLP 455
+F +LP+ DI+LG +WL S+ + D++ M+F +G ++++ G S P
Sbjct: 65 NFRMLPLGNYDIILGMDWLESISPMQVDWANKWMEFNHQGASIRVQGLLSTP 116
>gi|62734016|gb|AAX96125.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550700|gb|ABA93497.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1448
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 37/260 (14%)
Query: 241 SQPSLLGPPP---PGLPPFRRLSV------AEQTERRAKGLCFNCDEQFKPGHRC-KAPQ 290
S P +L PPP P R + A ++ RR+KGLCF C +++ H+C ++ Q
Sbjct: 280 SFPRVLQPPPGEERKFPESVRTNTRDDKISALKSYRRSKGLCFTCGKRWSKDHKCAQSVQ 339
Query: 291 LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILID--- 347
L +++ +E + E +P + ++P+ T + +L TI +
Sbjct: 340 LHVVEELLEAFQSEEEENFVIP---------VPDSSPEETTLMTISLHACNGTISLHACN 390
Query: 348 -SSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFF 406
+ S H L + PV +V V DGG++ + QG + +F
Sbjct: 391 RTDSNHSLRVKGLLSK---PV------KVRVVDGGLLQCDKQLPDCSWWLQGRYYKSNFK 441
Query: 407 LLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEIN- 465
LLP++G D +LG +WL LG + D+ +++ KGQ +++ G S +AN I+
Sbjct: 442 LLPLNGYDAILGMDWLAGLGVMKIDWMHKWLEYQDKGQLIRIQGVHS---DVANCRLISG 498
Query: 466 -QLLLQEKQGIFFQIMAITT 484
QL K G + ITT
Sbjct: 499 AQLRGLYKVGALMHMFQITT 518
>gi|116310095|emb|CAH67115.1| H0502G05.6 [Oryza sativa Indica Group]
Length = 898
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/360 (20%), Positives = 144/360 (40%), Gaps = 75/360 (20%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
SG+NP CEQY + + + +A + G+A W + + ++W
Sbjct: 152 FSGDNPQMWKANCEQYFDVYGIQSVYWVKIATLNFCGNAAFWLQSVRNQICGISWTGLCE 211
Query: 145 ALVTQFGT----------------------FEDGDAVGTQ------NLPESFFISCFLSG 176
+ T+F E D++ Q +L +F++ F+ G
Sbjct: 212 LVCTRFSKDRQQALIRQWIHIRQEGFVSEYVEKFDSLMHQLLAYDNSLLPVYFVTKFVEG 271
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEY-------------AAVSNRRIPPRPSMSRP 223
LR DI++ V + +P L +A QEE +++ R P+++
Sbjct: 272 LRSDIRVVVLVQRPQDLDSACAVALLQEEALEGIKFNQYRKPDSSIPVRSFQKTPALAHT 331
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
+ P +P T+ ++ + +L+ A ++ RR+KGLCF C E++
Sbjct: 332 ATPQKQFTPQHTEDKRGTESARARE--------EKLA-ALKSYRRSKGLCFTCGERWSRD 382
Query: 284 HRCKAPQLLLLDADIED--KDEQAEALEELP-----ETLEVSLKALTGATPQNTMRLKGN 336
H+C + L + ++ D +DE + E P + + +S +AL G ++RL+G
Sbjct: 383 HKCGSAVQLHVVQELLDALQDETPDGDPETPSDSNSDLMAISQQALWGTESSKSIRLRGL 442
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCP------VTTTTQFQVTVADGGVISSSGKCS 390
++ + +L+ LA GC ++ + ++ + G++ + CS
Sbjct: 443 VQGSELLMLL------------LAVDGGCKDLISSVISDCSIWEAMILSLGIVPQTTHCS 490
>gi|147791940|emb|CAN72445.1| hypothetical protein VITISV_026551 [Vitis vinifera]
Length = 721
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 24/221 (10%)
Query: 72 LVQPRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWL 130
LV P+ +LDF G ++PT IFR EQ+ D + LA HL+ DA Y
Sbjct: 65 LVVPKLAKLDFPRYDGSKDPTLWIFRXEQFFEFQGTSLEDQVKLAAYHLEKDAQLXYERR 124
Query: 131 EQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
+ +T K L+ + D L + C +S L++ ++ V++ P
Sbjct: 125 KNQGHLVTXDGMKAGLLERLLARAD-------TLIDKQEAECLISRLKDGLRXDVRVQNP 177
Query: 191 ASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKT-GGSSQPSLLGPP 249
+L LAR E A + RP+ P +SS + +S PS G
Sbjct: 178 QNLSVAIGLARTYELKAQ----------EVRRPTNPTFSSSVHNSNNQWNTSTPS--GAK 225
Query: 250 PPGLP---PFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK 287
L P +LS + RR +GLC+NCDE++ GH+ K
Sbjct: 226 DTNLERILPIHKLSPTKLQRRRQQGLCYNCDEKYXMGHKXK 266
>gi|78707944|gb|ABB46919.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1778
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/431 (23%), Positives = 163/431 (37%), Gaps = 90/431 (20%)
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN---MTWAQFKRALVT----------- 148
L E + +S A L G A W+ Q +TW +F A
Sbjct: 403 LIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPSGVVALK 462
Query: 149 --QFGTFEDGDAVGTQNLPESFFISC---------------FLSGLREDIKIGVQMLKPA 191
+F G T+ L + ++C FL GL +++ +
Sbjct: 463 KREFRALNQGSRSVTKYLHDFNRLACYAPEDVCTDEERQEKFLEGLNDELSYALMSTDFR 522
Query: 192 SLLQTFELARFQEEYAA--------------VSNRRIPPRP-----SMSRPSPPLLNSSP 232
Q + A QE+ AA V+ ++P P S+ RP N++
Sbjct: 523 DFQQLVDKAIRQEDKAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVVRPQRQFYNNN- 581
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---R 285
T G+ +++ P V Q RR +G +CFNC + PGH +
Sbjct: 582 --TGNRGNDNRNVVARPAA-------TPVQNQPVRREQGSKPVICFNCGD---PGHYADK 629
Query: 286 CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLK-GNLKKHGV-- 342
C P+ + K+ A +P + + + A QN + G + +
Sbjct: 630 CPKPRRV--------KNAPAPNNFNVPAP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPA 680
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
T+L DS +TH FL+ S A ++G V + + + G S+ C V + + F
Sbjct: 681 TVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFP 740
Query: 403 LDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANH 461
LL D++LG +WL R G I K+T+ + G+TV + S P +H
Sbjct: 741 SSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NGETVSF--FASSP---KSH 794
Query: 462 GEI-NQLLLQE 471
GE+ NQ+ LQE
Sbjct: 795 GEVLNQVALQE 805
>gi|255585537|ref|XP_002533459.1| conserved hypothetical protein [Ricinus communis]
gi|223526692|gb|EEF28928.1| conserved hypothetical protein [Ricinus communis]
Length = 259
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 29/156 (18%)
Query: 78 IRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTM-- 134
++L+F SG + P + R Q+ + ++ LE + LA +L+G+A W WL+++
Sbjct: 94 VKLEFPRFSGTQEPAEWLDRVAQFFKYSSTLEGQRVPLASFYLEGEANQWLQWLQRSYKQ 153
Query: 135 --GNMTWAQFKRALVTQF--GTFED-GDAVG---------------------TQNLPESF 168
G +TW FK+ LV++F G D G+A+ ++ P
Sbjct: 154 DGGEITWDIFKKELVSRFDPGIETDFGEALSRVKQTGSLKDYRKEFERLSNRVEDCPTKE 213
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
I F+ GL+E I V+M P +LL+T E+AR +E
Sbjct: 214 LIGTFMGGLKEAIAEEVRMSNPNTLLKTVEMARTRE 249
>gi|218198468|gb|EEC80895.1| hypothetical protein OsI_23541 [Oryza sativa Indica Group]
Length = 351
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 75 PRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +L+F G ++P + + CEQ+ R + D + LA HL G A WY EQ
Sbjct: 142 PRFYKLEFAKFDGSDDPLNWLNHCEQFFRAQRSPDGDRVWLATYHLTGAAQEWYFHYEQH 201
Query: 134 MGNMTWAQFKRALVTQFGTFEDGDAVG-------------------------TQNLPESF 168
G W FK TQ+G + +G T L E
Sbjct: 202 KGPPDWDTFKELCYTQYGPPIRNNPLGELKRLSQSTTVATYQQRFLALSSRVTDLLTERQ 261
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR 213
+ F +GLR+DI I V++ +P L + LAR E A S R
Sbjct: 262 QVQLFTAGLRDDICIDVELHQPEDLQEAMGLARAYERKANFSPSR 306
>gi|357510711|ref|XP_003625644.1| Serine carboxypeptidase [Medicago truncatula]
gi|355500659|gb|AES81862.1| Serine carboxypeptidase [Medicago truncatula]
Length = 712
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 138/350 (39%), Gaps = 42/350 (12%)
Query: 130 LEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISC--FLSGLREDIK--IGV 185
LE G+M+ ++ V + TF + T F C F +GLR DIK IG
Sbjct: 217 LELKQGDMSVTEYAAKFV-ELATFYPHYSAETAE-----FSKCIKFENGLRADIKRAIGY 270
Query: 186 QMLKPASLLQTFELARFQEE-----YAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGS 240
Q +K S L R EE Y +S RR + +RP P + K G
Sbjct: 271 QQIKVFSEL--VNRCRIYEEDTKAHYKIMSERR--GKGQQNRPKPYSAPADKGKQKMGDD 326
Query: 241 SQPSLLGPPPPGL-----PPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLD 295
+P P + + +V + +R+ CF C ++ CK ++ +
Sbjct: 327 RRPKRRDAPVEIVCYKCGEKGHKSNVCGRDDRK----CFRCGQKGHSLAECKRGDIVCYN 382
Query: 296 ADIEDKDEQAEALEELPETLEVSLK----ALTGA-TPQNTMRLKGN--LKKHGVTILIDS 348
+ E + PE + + ALTG TP ++G + +ID+
Sbjct: 383 CNGE-----GHISSQCPEPKKTRIGGKVFALTGTQTPNEDRLIRGTCFFNSTPLIAIIDT 437
Query: 349 SSTHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFL 407
+TH F+ A + G ++ + V G +++S C P++ G F +D
Sbjct: 438 GATHCFIAIECAYKLGLDISDMKGEMVVETPAKGSVTTSLVCLRCPISMFGRDFVIDLVC 497
Query: 408 LPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPA 457
LP++G D++ G WL + FSK T+ F+ ++S+ P
Sbjct: 498 LPLTGMDVIFGMNWLEYNRVHINCFSK-TVHFSSADNICSPWTFNSVIPG 546
>gi|255561186|ref|XP_002521605.1| conserved hypothetical protein [Ricinus communis]
gi|223539283|gb|EEF40876.1| conserved hypothetical protein [Ricinus communis]
Length = 177
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 36/177 (20%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE-------YAAVSNRRIPP 216
L ES+FIS F +GL E+++ V+ML+P +L Q F+ AR QE+ +N+
Sbjct: 8 LTESYFISSFTNGLNEELQPVVKMLRPFTLNQDFDQARLQEQSIKALFKKQGTNNQSCSF 67
Query: 217 RPSMSRPS-------PPLLNSSPTITKTGG--SSQPSLLGPPPPGLPPFRRLSVAEQTER 267
SM S P N IT+ S P+ L R
Sbjct: 68 SKSMKFYSFIEHFHPPDSNNKRGKITRAANAVSKGPNTLDT------------------R 109
Query: 268 RAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETL--EVSLKAL 322
R C++ EQF GH+C LL+++ D ++ E+ ++E+ ET+ E+S+ A+
Sbjct: 110 RYNNPCYHYGEQFFFGHQCNNKPLLMMEGDDLEECEEYSGIDEVKETMNVEISMYAI 166
>gi|224133300|ref|XP_002321533.1| predicted protein [Populus trichocarpa]
gi|222868529|gb|EEF05660.1| predicted protein [Populus trichocarpa]
Length = 224
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%)
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG 380
+ G MR++ + + LID STH F+ S + K+ G ++ +V V D
Sbjct: 116 VMIGNPNLRIMRVRAKVGNLTIIPLIDIGSTHYFVPSKMTKRMGIEISAQRFMRVKVVDD 175
Query: 381 GVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
I+S G+ + Q F +LP+ G D+VLG +WL+ LG+IL
Sbjct: 176 TEINSEGEYADFKFKIQRNHFVSQAIVLPLGGYDVVLGIQWLQELGSIL 224
>gi|255585541|ref|XP_002533461.1| conserved hypothetical protein [Ricinus communis]
gi|223526694|gb|EEF28930.1| conserved hypothetical protein [Ricinus communis]
Length = 288
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 56 QINNQQPEPAGRIGGALVQ-PRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSL 114
+I+ Q + A I ++ PR IR+ + P + R QY A+++E + L
Sbjct: 107 RISGFQTDYAKEISKVKLEFPRFIRI-------QEPAEWLHRIAQYFEYASIVEDQKVPL 159
Query: 115 AIGHLDGDAVPWYHWLEQTMG----NMTWAQFKRALVTQFGTFED-GDAVG--------- 160
A +L+ +A W WL+++ +TW FK+ LV++FG ED G+A+
Sbjct: 160 ASFYLEEEANQWLQWLQRSYKQDEEEITWEIFKKELVSRFGPSEDSGEALSRVKQTGSLR 219
Query: 161 ------------TQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
+N P I F+ GL+E+ V+M P +L + ++AR+ E
Sbjct: 220 DYIKEFERLSTRVENCPTKDLIQKFIGGLQEETAEYVRMYNPKTLHEMVQIARYAE 275
>gi|78708482|gb|ABB47457.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1461
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 44/298 (14%)
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR-------RIP------PRPS 219
FLSGL +++ + + + A QEE++ NR R P PR +
Sbjct: 212 FLSGLDDELTNQLISRDYEDFEKLVDKAIRQEEHSNKINRKRKAAQFRTPQGKSQKPRFT 271
Query: 220 MS-RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLP-PFR--RLSVAEQTERRAKG--LC 273
M RP P + + + +S+ L P P L P + +L++ EQ +R + LC
Sbjct: 272 MGHRPYHPGSFNKNHHSGSHNNSEQHSLNPTPSSLKIPAQSVQLALPEQPKRLGEKPELC 331
Query: 274 FNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
FNC+ KPGH +C+ P+ K QA + + + + + G P N+
Sbjct: 332 FNCN---KPGHTVGKCQKPR------RAGPKFVQARVNHASAKEAQSAPEVILGTFPVNS 382
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
IL DS +TH F++ A +G + GG ++++ C
Sbjct: 383 T---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCP 433
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 434 SVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIELTNAKGEVV 489
>gi|224116104|ref|XP_002331998.1| predicted protein [Populus trichocarpa]
gi|222874766|gb|EEF11897.1| predicted protein [Populus trichocarpa]
Length = 304
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 49/173 (28%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYH-WLEQTMGNM 137
R+D G+NP V I +L+G A W+ ++ N+
Sbjct: 120 RMDLTTFRGDNPK-------------------VGRTCIFYLEGKAEIWFEGYMCGVEINL 160
Query: 138 TWAQFKRALVTQFG------------TFEDGDAVGTQN--------------LPESFFIS 171
W +F RA+ ++FG T E G + L ES++IS
Sbjct: 161 EWEEFSRAICSRFGNRADIVEEFNKLTHEGGIEEYVERFEELKSLMHSLNSLLLESYYIS 220
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPS 224
F+SGL+EDIK +++LKP +L++ F+ A++QEE V R+ M+RP+
Sbjct: 221 SFISGLKEDIKPMLKILKPETLMKNFDQAKWQEESNNVLARK---NKFMARPA 270
>gi|13129427|gb|AAK13085.1|AC078839_1 Similar to Sorghum bicolor 22 kDakafirinclusterpolyprotein [Oryza
sativa Japonica Group]
Length = 1484
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 44/298 (14%)
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR-------RIP------PRPS 219
FLSGL +++ + + + A QEE++ NR R P PR +
Sbjct: 212 FLSGLDDELTNQLISRDYEDFEKLVDKAIRQEEHSNKINRKRKAAQFRTPQGKSQKPRFT 271
Query: 220 MS-RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLP-PFR--RLSVAEQTERRAKG--LC 273
M RP P + + + +S+ L P P L P + +L++ EQ +R + LC
Sbjct: 272 MGHRPYHPGSFNKNHHSGSHNNSEQHSLNPTPSSLKIPAQSVQLALPEQPKRLGEKPELC 331
Query: 274 FNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
FNC+ KPGH +C+ P+ K QA + + + + + G P N+
Sbjct: 332 FNCN---KPGHTVGKCQKPR------RAGPKFVQARVNHASAKEAQSAPEVILGTFPVNS 382
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
IL DS +TH F++ A +G + GG ++++ C
Sbjct: 383 T---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCP 433
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 434 SVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIELTNAKGEVV 489
>gi|147809918|emb|CAN71623.1| hypothetical protein VITISV_025787 [Vitis vinifera]
Length = 569
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 120/288 (41%), Gaps = 74/288 (25%)
Query: 59 NQQPEPAGRIGGA-----LVQPRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVL 112
N+ P G+ GGA LV P+ +LDF G E+ T I R EQ+ D +
Sbjct: 14 NRNXGPHGQ-GGAGYTSGLVIPKLAKLDFPRYDGSEDLTLWICRAEQFFEFQGTSLEDQV 72
Query: 113 SLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDG-DAVGTQNLPESFFIS 171
LA HL+ DA WY + +TW DG DA
Sbjct: 73 KLAAYHLEKDAQLWYQRRKNQGHLVTW---------------DGMDA------------- 104
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
GL E L +T+EL + QE + RP+ P +S
Sbjct: 105 ----GLLE------------RLARTYEL-KAQE---------------VRRPTNPTFSSL 132
Query: 232 PTITKT-GGSSQPS-LLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP 289
+ +S PS G P + P +LS E RR +GLC+NCDE++ GH+CK
Sbjct: 133 VCNSNNQWNTSXPSGTKGTDPKRILPIXKLSPTELQRRRQQGLCYNCDEKYTMGHKCKK- 191
Query: 290 QLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNL 337
L ++E+++E+A E + ETL +SL AL G TMR+ +
Sbjct: 192 ---LFFIELEEENEEAIEEEYVEETLAISLHALAGVQSPQTMRIHSQI 236
>gi|358349311|ref|XP_003638682.1| Microtubule organization protein [Medicago truncatula]
gi|355504617|gb|AES85820.1| Microtubule organization protein [Medicago truncatula]
Length = 227
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 226 PLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHR 285
P SP KTG P+LL P P F ++S AE TERR KGLCFNCDE+F GH
Sbjct: 105 PWTPPSPRQNKTGIRPTPALLSTPATE-PRFWQISKAELTERREKGLCFNCDERFSQGHH 163
Query: 286 CKAPQL 291
C QL
Sbjct: 164 CIQTQL 169
>gi|77551042|gb|ABA93839.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 852
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 44/282 (15%)
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLL 228
+ F GL DI+ V M +P L LA QEE L+
Sbjct: 202 LVHRFTEGLHADIRHSVLMHRPVDLESALVLALLQEE---------------------LV 240
Query: 229 NSSPTI-TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK 287
+++ T ++ G G LPP + + + +G+ +++ G R
Sbjct: 241 DAAKTTESRKFGDHGAKFKGAYSLPLPPSKTIVFPD------RGVYKADEKKIVDGQRSV 294
Query: 288 APQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILID 347
+ D ++QA L +S+ A+ G +T RL G ++ V IL+D
Sbjct: 295 QTSADDHSSCSSDDNDQAT-------LLALSIHAIQGIVSSSTKRLHGKIQGRDVLILVD 347
Query: 348 SSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFL 407
S S+ FL+ + A Q V VA+G ++ + + ++QGF F F +
Sbjct: 348 SGSSTSFLSVAFADQLEGVQPLRRPLSVKVANGEMLRCLTELPNTVWSAQGFGFCTTFKV 407
Query: 408 LPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
+ + G D +LG +WL M W+ +T++LT
Sbjct: 408 ITMGGYDAILGMDWLTQHSP---------MDIDWQAKTIRLT 440
>gi|77554563|gb|ABA97359.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 795
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 239 GSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGHRCKAPQLLLL 294
S Q SL P P + P + + A+Q + + G LCFNC+E C P+ L
Sbjct: 34 NSEQHSLNPTPSPLMIPAQSVQSAQQEQPKKFGEKPELCFNCNEPRHMVRMCPKPRRARL 93
Query: 295 DADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
K QA E + + + + G P N+ IL DS +TH F
Sbjct: 94 ------KFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSF 138
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ A +G + GG ++++ C + V QG F + LL D
Sbjct: 139 ISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSMTVEIQGLIFPANLILLESKDLD 198
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
++LG +WL ++ D + T++ T KG+ V
Sbjct: 199 VILGMDWLTRYRGVI-DCASRTIKLTNAKGEVV 230
>gi|224117380|ref|XP_002317559.1| predicted protein [Populus trichocarpa]
gi|222860624|gb|EEE98171.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 57/228 (25%)
Query: 112 LSLAIGHLDGDAVPWYHWLEQTMGNMT-WAQFKRALVTQFGTFED--------GDAVGTQ 162
+ +A +L+G + W+ + ++T W + +AL +FG+ D GT
Sbjct: 11 VEVASMYLEGKSEIWFEGILLGNNDLTNWKELAKALCMRFGSHSDVVEEFNKLEQEKGTD 70
Query: 163 N---------------LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE-Y 206
LPES+++S F+SGL+E IK +++LKP +L+Q F+ A++ E+
Sbjct: 71 EYIERLKSLMKTLNPMLPESYYVSSFISGLKEKIK--LKILKPTTLIQAFDQAKWHEKSI 128
Query: 207 AAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQT- 265
AV R I +P I+ + + + + + P PF + V EQ+
Sbjct: 129 VAVVRRNII---------------APRISSSFNNERSAGITP----YKPFNQHGVDEQSS 169
Query: 266 ----------ERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDE 303
+RR GLCF D++F PGH+C + L++ ++K++
Sbjct: 170 PKQSTNTLYEQRRKLGLCFKYDDKFVPGHKCSVKGIHLIEGREDEKEK 217
>gi|34015139|gb|AAQ56336.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 674
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 45/200 (22%)
Query: 262 AEQTERRAKGLCFNCDEQFKPGHRCKA-------PQLLLLDADIEDKDEQAEALEELPET 314
A ++ RRA+GLC+ C E++ P H+C +L + + + + E +E+ E +T
Sbjct: 318 ALKSYRRAQGLCYLCAEKWSPTHKCSGIVQLQAVQELFAMFSADQPEQELSESDGEGSQT 377
Query: 315 L-EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQF 373
L +SL+A+ G G+ L
Sbjct: 378 LMAISLQAIQGTVA-------------GIQPL------------------------RVPL 400
Query: 374 QVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFS 433
QV VA+G ++ + + QG FH F +LP++ D++LG +WL + D+
Sbjct: 401 QVRVANGSILQCESELPNAKWEVQGNTFHTTFKVLPLNNYDVILGMDWLEQHSPMDIDWQ 460
Query: 434 KLTMQFTWKGQTVQLTGYDS 453
K T+ G VQL G S
Sbjct: 461 KKTLSLQGNGGLVQLLGVSS 480
>gi|55733831|gb|AAV59338.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1238
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 89/216 (41%), Gaps = 41/216 (18%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH--------RCKAPQLL 292
PS L P + P ++ EQ +R + LCFNC+ KPGH RC P+ +
Sbjct: 44 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPRCAGPKFV 96
Query: 293 LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTH 352
QA E + + + + G P N+ IL DS +TH
Sbjct: 97 -----------QARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATH 136
Query: 353 IFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSG 412
F++ A +G + GG ++++ C V V QG F + LL
Sbjct: 137 SFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKD 196
Query: 413 CDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
D++LG +WL R G I D + T++ T KG+ V
Sbjct: 197 LDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 230
>gi|108710432|gb|ABF98227.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1160
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 63 EPAGRIGGALVQP------RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
EP + G + P R RL+ + +GE+ + +CE++ + ++LA
Sbjct: 191 EPPRYLHGVIPNPYTEMSLRSQRLELTLFNGEDAVGWLQQCEKFFEMTGTPVDQWVNLAS 250
Query: 117 GHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF-------------------------G 151
GHL G A W+ L + W QF ++ +F
Sbjct: 251 GHLVGRAGKWFRNLAIPWYCLNWQQFYLMVLDRFTEANAHEAVELLQNAKQTGSVMQYID 310
Query: 152 TFEDGDAVGTQNLP---ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAA 208
FED ++ ++ P ES+ +SCF+ GLR DIK V KP +LL + A+ E+ A+
Sbjct: 311 KFEDCVSLVKRDHPYLTESYILSCFIGGLRADIKHDVCGQKPQNLLAGYWYAKVYEK-AS 369
Query: 209 VSNR 212
++ R
Sbjct: 370 IAKR 373
>gi|255585189|ref|XP_002533298.1| conserved hypothetical protein [Ricinus communis]
gi|223526882|gb|EEF29092.1| conserved hypothetical protein [Ricinus communis]
Length = 188
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPL 227
+ ISCFL GL+ +I I ++M P +L + + LAR QE Y + R S +
Sbjct: 81 YHISCFLCGLKGEICIPLRMFGPKTLQKAYTLARLQESYLTAT------RTKKSYYNKTF 134
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
L SS T +Q P +P RRL AE +RAK LCF CD++F
Sbjct: 135 LPSSS----TQAINQTKPALPLLLPIPRTRRLKDAEINNKRAKNLCFWCDDKF 183
>gi|31712084|gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1246
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 63 EPAGRIGGALVQP------RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
EP + G + P R RL+ + +GE+ + +CE++ + ++LA
Sbjct: 277 EPPRYLHGVIPNPYTEMSLRSQRLELTLFNGEDAVGWLQQCEKFFEMTGTPVDQWVNLAS 336
Query: 117 GHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF-------------------------G 151
GHL G A W+ L + W QF ++ +F
Sbjct: 337 GHLVGRAGKWFRNLAIPWYCLNWQQFYLMVLDRFTEANAHEAVELLQNAKQTGSVMQYID 396
Query: 152 TFEDGDAVGTQNLP---ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAA 208
FED ++ ++ P ES+ +SCF+ GLR DIK V KP +LL + A+ E+ A+
Sbjct: 397 KFEDCVSLVKRDHPYLTESYILSCFIGGLRADIKHDVCGQKPQNLLAGYWYAKVYEK-AS 455
Query: 209 VSNR 212
++ R
Sbjct: 456 IAKR 459
>gi|38347240|emb|CAE05433.2| OSJNBa0059H15.4 [Oryza sativa Japonica Group]
Length = 407
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 21/136 (15%)
Query: 315 LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
+ +SL+A++G + R+KG ++ V +LIDS S+H FL++ +A + FQ
Sbjct: 69 MALSLQAISGTESATSFRIKGCIQGTEVLMLIDSGSSHSFLDTQVAHK----------FQ 118
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
V+S +G FH DF LL + D++LG +WL +LG + D++
Sbjct: 119 GVQPLQKVLSV-----------KGVGFHTDFKLLSLGVYDVILGMDWLVTLGTMNIDWAA 167
Query: 435 LTMQFTWKGQTVQLTG 450
M++ +T+++ G
Sbjct: 168 KWMEYQLGNKTIRIQG 183
>gi|77551099|gb|ABA93896.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 897
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 262 AEQTERRAKGLCFNCDEQFKPGHRCKAPQLL-------------LLDADIEDKDEQAEAL 308
A + RRAKGLC C E++ H+C L ++D++IE + E E +
Sbjct: 15 ALRAYRRAKGLCPACGERWSRDHKCGPTVQLHVLEELWEMLDDHIMDSNIEPEAELFEPV 74
Query: 309 EEL-PETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQ 362
+ E ++S + + G T+RL+G L++H V +L+DS STH F++ +A Q
Sbjct: 75 QSADSEICQISREVVLGLETTGTLRLQGWLQQHEVLMLVDSGSTHSFISEVMAAQ 129
>gi|224143665|ref|XP_002336067.1| predicted protein [Populus trichocarpa]
gi|222869875|gb|EEF07006.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 26/168 (15%)
Query: 76 RHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTM 134
+ +++D G E+P+ +QY L + L A HL G + +Y +L+
Sbjct: 80 KGLKIDLFKYDGTEDPSGWTLLADQYFLLHQIPPAQRLLYASFHLKGATLQYYKYLQHAG 139
Query: 135 GNMTWAQFKRALVTQFGTFEDGDAVG------------------------TQNLPESFFI 170
W F +AL +FG E D G L + F
Sbjct: 140 ELNDWVSFIQALEKRFGPTEYEDPEGELSKLRQTSTVAAYQSQFENLAQRIDGLLDRFLT 199
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRP 218
F+SGL++DIK V +P SL LAR QE+ ++ +RR PRP
Sbjct: 200 RTFISGLKDDIKTNVNSFRPTSLKDAIGLARLQEK-SSSGDRRNFPRP 246
>gi|39546203|emb|CAE04628.3| OSJNBa0028I23.10 [Oryza sativa Japonica Group]
Length = 1462
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 100/240 (41%), Gaps = 40/240 (16%)
Query: 222 RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLP-PFR--RLSVAEQTERRAKG--LCFNC 276
RP P + + + +S+ L P P L P + +L++ EQ +R + LCFNC
Sbjct: 302 RPYHPGSFNENHHSGSHNNSEQHSLNPTPSSLKIPAQSVQLALPEQPKRLGEKPELCFNC 361
Query: 277 DEQFKPGH--------RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+ KPGH RC P+ + + AE + PE + G P
Sbjct: 362 N---KPGHTVGKCPKPRCAGPKFVQACVN----HASAEEAQSAPEVI-------LGTFPV 407
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 408 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 458
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 459 CPSVTVEIQGLIFPTNLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|54633397|gb|AAV35799.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|108709586|gb|ABF97381.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1238
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 237 TGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAK-----GLCFNCDEQFKPGH---RCKA 288
+ +S+ L P P L + ++ Q E+ K LCFNC+E PGH +C
Sbjct: 299 SHNNSEQHSLNPTPSSLMNVAQSALPAQPEQPKKFGEKPDLCFNCNE---PGHMVGKCPK 355
Query: 289 PQ---LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTIL 345
P+ L + A + AE + PE + G P N+ TIL
Sbjct: 356 PRRAGLKFVQAHVNHAS--AEEAQSAPEVI-------LGTFPVNST---------PATIL 397
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
DSS+TH F++ A +G + GG ++++ C V V QG F +
Sbjct: 398 FDSSATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANL 457
Query: 406 FLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
LL D++L +WL R G I D + T++ T
Sbjct: 458 ILLESKDLDVILRMDWLTRHRGVI--DCTSHTIKLT 491
>gi|62734517|gb|AAX96626.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550171|gb|ABA92968.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1045
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 28/210 (13%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE----QAEALEELPETLEVSLKALT 323
G+CFNC + PGH +C P+ + A +++ +A + + +
Sbjct: 203 GVCFNCGD---PGHYANKCPKPRRVK-TAPVQNNSNAPAPKARVNHVTAAEAQNAPDVVL 258
Query: 324 GATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI 383
G P NT+ T+L DS +TH FL+ S A +G V + + + G +
Sbjct: 259 GTFPVNTI---------PTTVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTSGNQV 309
Query: 384 SSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWK 442
SS+ C + + + F LL D++LG +WL R G I K+T+ +
Sbjct: 310 SSTQYCPSITIEIEEIPFPSTLILLESKDLDVILGMDWLIRHRGVIDGANRKVTLTSS-N 368
Query: 443 GQTVQLTGYDSLPPALANHG-EINQLLLQE 471
GQTV + +HG +NQ+ LQE
Sbjct: 369 GQTVSFFVFSP-----RSHGLTLNQVALQE 393
>gi|37991871|gb|AAR06317.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1233
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 237 TGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAK-----GLCFNCDEQFKPGH---RCKA 288
+ +S+ L P P L + ++ Q E+ K LCFNC+E PGH +C
Sbjct: 299 SHNNSEQHSLNPTPSSLMNVAQSALPAQPEQPKKFGEKPDLCFNCNE---PGHMVGKCPK 355
Query: 289 PQ---LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTIL 345
P+ L + A + AE + PE + G P N+ TIL
Sbjct: 356 PRRAGLKFVQAHVNHAS--AEEAQSAPEVI-------LGTFPVNST---------PATIL 397
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
DSS+TH F++ A +G + GG ++++ C V V QG F +
Sbjct: 398 FDSSATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANL 457
Query: 406 FLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
LL D++L +WL R G I D + T++ T
Sbjct: 458 ILLESKDLDVILRMDWLTRHRGVI--DCTSHTIKLT 491
>gi|8778575|gb|AAF79583.1|AC007945_3 F28C11.8 [Arabidopsis thaliana]
Length = 368
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N M KG + H V I++DS ++ F+ S L+ + P+ T +F+ +ADG + S GK
Sbjct: 153 NIMEFKGTVDGHEVVIIVDSGASKNFVASWLSDKLDRPIEPTPRFRALLADGRIESFQGK 212
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
S++P+ ++D FL + G DI+ G +
Sbjct: 213 YSNLPITIGSETLYVDCFLFTLGGGDIIFGGQ 244
>gi|224076098|ref|XP_002335830.1| predicted protein [Populus trichocarpa]
gi|222835793|gb|EEE74228.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 33/153 (21%)
Query: 80 LDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYH----WLEQTMG 135
+D G+NP + RC+++ +L + + + +L+G W+ W+E ++
Sbjct: 1 MDLTTFQGDNPRGWLRRCKKFFKLNSTPLQQWVEIGSLYLEGKVKIWFEGYMCWVEVSL- 59
Query: 136 NMTWAQFKRALVTQFGTFED--------GDAVGTQN------------------LPESFF 169
W +F + ++FG+ ED G + LPE ++
Sbjct: 60 --EWEEFSSVICSRFGSREDIVEEFNKLTQERGIEEYVERFDELKSLMHSLNSLLPELYY 117
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARF 202
IS F+SGL+EDIK +++LKP +L+ F+ A++
Sbjct: 118 ISSFISGLKEDIKPMLKILKPGALMVAFDQAKW 150
>gi|38347241|emb|CAD39354.2| OSJNBa0059H15.5 [Oryza sativa Japonica Group]
Length = 1466
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 245 LLGPPPPGLP--PFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIE 299
L+ P P LP P + E+ E LCFNC+E PGH RC P+
Sbjct: 371 LMIPAQPALPAQPEQPKKFGEKPE-----LCFNCNE---PGHTVGRCPKPR------RAG 416
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
K QA E + + + + G P ++ K IL DS +TH F++
Sbjct: 417 PKFVQARVNHASAEEAQSAPEVILGTFPVDSTPAK---------ILFDSGATHSFISKRF 467
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
A +G + GG ++++ C V V QG F + LL D++LG
Sbjct: 468 AGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGMIFPANLILLESKDLDVILGM 527
Query: 420 EWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
+WL R G I D + T++ T KG+ V
Sbjct: 528 DWLTRHRGVI--DCASRTIKLTNAKGEVV 554
>gi|38346257|emb|CAE02079.2| OSJNBa0074B10.7 [Oryza sativa Japonica Group]
Length = 1287
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 100/258 (38%), Gaps = 24/258 (9%)
Query: 220 MSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG---LCFNC 276
M R + + PT T S++ PP P + P Q R +G LCFNC
Sbjct: 192 MLRAPTSIRGARPTAAATAESARDPCACPPAPVVQP-------SQGRRDIQGQQRLCFNC 244
Query: 277 DEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRL 333
F+PGH +C P+ A + + + + T +T +
Sbjct: 245 ---FEPGHFADKCPKPRRKQGQAPPRPNNGGKDVIRGRANHVTTEDVLTTPDVIVDTFLI 301
Query: 334 KGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVP 393
L TIL DS ++H F++ + V + GGV+++ VP
Sbjct: 302 HSIL----ATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAMYYSPAVP 357
Query: 394 VNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
+ QG F D LL D++LG WL ++ D +K T+ ++G + +
Sbjct: 358 IEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCAKCTVTL-YRGPEQPVVFF-- 413
Query: 454 LPPALANHGEINQLLLQE 471
PP E++Q+ L E
Sbjct: 414 APPTSVGSSELHQIGLSE 431
>gi|18092337|gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
Length = 1470
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 56/108 (51%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
++L DS ++H F+ +S +++ P + + GG + ++ C HV + QG F
Sbjct: 375 ASVLFDSGASHSFITASFVEKHNIPKYPLKRILHISSPGGDMKATHSCPHVNIKIQGIDF 434
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
+D +L +G D++LG WL+S ++ + M + +G+ +Q+
Sbjct: 435 TVDPVVLGSNGIDVILGCNWLKSCDGVIRCANGTIMLTSPQGERIQVN 482
>gi|116309024|emb|CAH66139.1| H0616A11.3 [Oryza sativa Indica Group]
Length = 1451
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A +P + + + A Q
Sbjct: 319 ICFNCGD---PGHYADKCPKPRRV--------KNASAPNNSNVPAP-KARVNHVAAAEAQ 366
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A ++G V + + + G + S
Sbjct: 367 NAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFS 426
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C V + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 427 TRYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS-NGE 485
Query: 445 TVQLTGYDSLPPALANHGEINQLLLQE 471
TV + S P +L G +NQ+ LQE
Sbjct: 486 TVSF--FASSPKSLG--GVLNQVALQE 508
>gi|357450709|ref|XP_003595631.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355484679|gb|AES65882.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 338
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 267 RRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGAT 326
+R +CFNC+E+ G +CK P+ P T V AL G
Sbjct: 52 KRNDIVCFNCNEEGHIGSQCKQPK-------------------RAPTTGRVF--ALAGTQ 90
Query: 327 PQNT---MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGV 382
+N +R + + +ID+S+TH G V+ + V G
Sbjct: 91 TENEDHLIRGTCYINNTPLVAIIDTSATHCIFAFHCVSALGLDVSDMNGEMVVDTPAKGS 150
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
+++S CS P++ G F +D LP+SG D++LG WL + FSK
Sbjct: 151 VTTSLVCSRCPLSMDGRDFVMDLVCLPLSGMDVILGMNWLEYNHVHINCFSK 202
>gi|77556355|gb|ABA99151.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 836
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
GLCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 228 GLCFNCN---KPGHTVGKCPKPRR------AGPKFVQAHVNHASAEEAQSAPEVILGTFP 278
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 279 VNST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTH 329
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQT 445
C V + QG F + LL D++LG +WL R G I D + T++ T KG+
Sbjct: 330 YCPSVTIEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCTSRTIKLTNAKGEV 387
Query: 446 V 446
V
Sbjct: 388 V 388
>gi|224110488|ref|XP_002315534.1| predicted protein [Populus trichocarpa]
gi|222864574|gb|EEF01705.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 51/236 (21%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
R++F GENP S I C +Y +L + + + +L+G W+ L + G M
Sbjct: 46 RMEFTTFQGENPRSWIRICRKYFKLHLIPVNQWVEITSMYLEGRVEVWFEGLMASNGEMV 105
Query: 139 -WAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTF 197
W +F + + +FG ++D+ + Q K +L+QT
Sbjct: 106 IWEEFTKGIYLRFGA-------------------------KKDVPLKRQNDK-KNLMQTM 139
Query: 198 ELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGP--PPPGLPP 255
+ RI +P+ + T GS+ PS + L
Sbjct: 140 -----------LRRSRIAGKPTFT-----------TGISKWGSNLPSKINNQMKNDALKE 177
Query: 256 FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEEL 311
++ + + +RR G C+ C EQ+K GH+C L L+D ED +E + +E+
Sbjct: 178 TKQPAKSLYEKRRRFGQCYKCGEQYKQGHQCHNKGLHLIDGMDEDDEEFKKLKKEI 233
>gi|38344617|emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa Japonica Group]
gi|38347085|emb|CAE05109.2| OSJNBa0001M07.5 [Oryza sativa Japonica Group]
Length = 1471
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 147/384 (38%), Gaps = 70/384 (18%)
Query: 108 ETDVLSLAIGHLDGDAVPW---YHWLEQTMGNMTWAQFKRA---------LVTQ----FG 151
E + ++ A L G A W Y T +TW +F+ + +V Q F
Sbjct: 105 EQEKVAFATHQLQGPASVWWDNYMVTRPTGAEVTWTEFRHSFNKAQVPEGIVAQKKREFR 164
Query: 152 TFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFE-------LARFQE 204
+ + G + L E ++ + ED++ + K L + ++R E
Sbjct: 165 SLQQGTRTVIEYLHEFNRLARYAP---EDVRTDAE--KQEKFLSGLDDELTNQLISRDYE 219
Query: 205 EYAAVSNRRIP---------PRPSMSRPSPPLLNSSPTITKTGGS---SQPSLLGPPPPG 252
++ + + P P + RP P S GS S+ L P P
Sbjct: 220 DFEKLGKSQKPRFTMGHHGGPSTMVIRPHRPYHPGSFNKNHHSGSHNNSEQHSLNPTPSS 279
Query: 253 LP-PFR--RLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
L P + R ++ EQ +R + LCFNC+ KPGH +C P+ K Q
Sbjct: 280 LKIPAQSVRPALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------RTGPKFVQ 330
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
A E + + + G P N+ IL DS +TH F++ A +G
Sbjct: 331 ARVNHASAEEARSAPEVILGTFPVNST---------PAVILFDSGATHSFISKRFAGAHG 381
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-R 423
+ GG ++++ C V V QG F + LL D++LG +WL R
Sbjct: 382 LSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTR 441
Query: 424 SLGAILWDFSKLTMQFT-WKGQTV 446
G I D + T++ T KG+ V
Sbjct: 442 HRGVI--DCASRTIKLTNAKGEVV 463
>gi|293331925|ref|NP_001168083.1| uncharacterized protein LOC100381817 [Zea mays]
gi|223945897|gb|ACN27032.1| unknown [Zea mays]
Length = 117
Score = 59.3 bits (142), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 51/106 (48%)
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT 376
VS+ A++ T L G + V I++DS S+H FL + LA Q V + V
Sbjct: 3 VSVAAVSRMPGPRTFCLGGIIHHQAVRIMVDSDSSHSFLKTKLATQLQGIVPLSVPIVVQ 62
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
VA+G + S C + Q F F DF +L V D +LG +WL
Sbjct: 63 VANGARLQCSAHCPATAWSVQEFTFSTDFKILDVFSYDAILGIDWL 108
>gi|50080333|gb|AAT69667.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALTEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 488 GMDWLARHRGVI--DCASRTIKLTNAKGEVV 516
>gi|77556354|gb|ABA99150.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1082
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
GLCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 122 GLCFNCN---KPGHTVGKCPKPR------RAGPKFVQAHVNHASAEEAQSAPEVILGTFP 172
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 173 VNST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTH 223
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQT 445
C V + QG F + LL D++LG +WL R G I D + T++ T KG+
Sbjct: 224 YCPSVTIEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCTSRTIKLTNAKGEV 281
Query: 446 V 446
V
Sbjct: 282 V 282
>gi|358343690|ref|XP_003635931.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355501866|gb|AES83069.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 558
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 132/350 (37%), Gaps = 67/350 (19%)
Query: 130 LEQTMGNMTWAQFKRALVT-------------QFGTFEDGDAVGTQNLPE---------- 166
LEQ +TWA F+R + +F + GD T+ + +
Sbjct: 143 LEQDGVAVTWAVFRREFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYVAKFVELAKFYPH 202
Query: 167 --SFFISC--FLSGLREDIKIGVQMLKPASLLQTFELARFQEE-----YAAVSNRRIPPR 217
+ F C F +GLR DIK + K + R EE Y +S RR +
Sbjct: 203 YTAEFSKCIKFKNGLRADIKRAIGYQKIRNFYDLVSSCRIYEEDTKAHYKVMSERR--GK 260
Query: 218 PSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFR------RLSVAEQTERRAKG 271
SRP P ++ + +P P + F+ + +V ++ E++
Sbjct: 261 GQQSRPKPYSAPANKVKQRLNDERRPRRRDAPTE-IVCFKCGEKGHKSNVCDRDEKK--- 316
Query: 272 LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTM 331
CF C ++ CK ++ + D E ++ + T
Sbjct: 317 -CFRCGKKGHTLADCKRGDVVCYNCDEEGH--------------------ISSQCRKPTY 355
Query: 332 RLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSGKCS 390
+ L + +ID+ +TH F+ A + G ++ + V G +++S C
Sbjct: 356 QRYLFLYSTPLIAIIDTGATHCFIAVDCAYKLGLVISDMNGEMVVETPAKGSLTTSLVCL 415
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
P++ G F +D LP++G D++ G WL + + FSK T+ F+
Sbjct: 416 SCPLSMFGRDFEVDLVCLPLTGMDVIFGMNWLENNRVHINCFSK-TIHFS 464
>gi|77554980|gb|ABA97776.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1406
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 35/238 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 380 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 426
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 427 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 477
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 478 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 537
Query: 418 GAEWL-RSLGAILWDFSKLTMQFTW-KGQTVQLTGYDSLPPALANHGEINQLLLQEKQ 473
G +WL R G I D + T++ T KG+ V P ++ +NQ +E++
Sbjct: 538 GMDWLTRHRGVI--DCASRTIKLTHAKGEVVTFQSLVPRKPGIS----LNQAAGEEQE 589
>gi|222635821|gb|EEE65953.1| hypothetical protein OsJ_21835 [Oryza sativa Japonica Group]
Length = 347
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 66/165 (40%), Gaps = 26/165 (15%)
Query: 75 PRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +L+F G ++P + + CEQ+ R + D + LA HL G A WY EQ
Sbjct: 149 PRFYKLEFPKFDGSDDPLNWLNHCEQFFRAQRSPDGDRVWLATYHLTGAAQEWYFHYEQH 208
Query: 134 MGNMTWAQFKRALVTQFGTFEDGDAVG-------------------------TQNLPESF 168
G W FK Q+G + +G T L E
Sbjct: 209 KGPPDWDTFKELCYAQYGPPIRNNPLGELKRLSQSTTVATYQQRFLALSSRVTDLLTERQ 268
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR 213
+ F GLR+DI I V++ +P L + LAR E A S R
Sbjct: 269 QVQLFTVGLRDDICIDVELHQPEDLQEAMGLARAYERKANFSPSR 313
>gi|62733353|gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|108864030|gb|ABA91610.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1441
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 29/207 (14%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 358 LCFNCN---KPGHTVGKCPKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPV 408
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 409 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 459
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 460 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 517
Query: 447 QLTGYDSLPPALANHGEINQLLLQEKQ 473
P ++ +NQ+ +E++
Sbjct: 518 TFQSLVPRKPGIS----LNQVAGEEQE 540
>gi|110288739|gb|AAP52510.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1416
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 305 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 351
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 352 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 402
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 403 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 462
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 463 GMDWLARHRGVI--DCASRTIKLTNAKGEVV 491
>gi|38346279|emb|CAE03982.2| OSJNBa0033H08.10 [Oryza sativa Japonica Group]
Length = 637
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGAT--PQ 328
GLCFNCDE+F PGHRCK +L L A D +E E + +SL A+ G
Sbjct: 427 GLCFNCDEKFTPGHRCK--RLFWLYAPSADDNETNPPNAEDGDP-GISLYAMAGVRLPGS 483
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA 360
TM+L + + L+DS STH F+N+ +A
Sbjct: 484 ETMQLHITINGKRLVALLDSGSTHNFINADVA 515
>gi|338808432|gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQY 363
+AEA++E P+ + G P ++ H +L D+ +TH F+ +S + +
Sbjct: 484 EAEAVQETPDMI-------VGTFPVDS---------HIAEVLFDTGATHSFITASWVEAH 527
Query: 364 GCPVTT-TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
P+TT +T Q+ A GG I + C +V V +G F + ++ G D++LG WL
Sbjct: 528 NLPITTMSTPIQIDSA-GGRIRADSICLNVSVEIRGIAFPANLIVMGTQGIDVILGMNWL 586
Query: 423 RSLGAIL 429
A++
Sbjct: 587 DKYQAVI 593
>gi|50080316|gb|AAT69650.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1458
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 92/224 (41%), Gaps = 31/224 (13%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTVQLTGYDSLPPALA 459
G +WL R G I D + T++ T KG+ V P ++
Sbjct: 488 GMDWLTRHRGVI--DCASRTIKLTNAKGEVVTFQSLVPRKPGIS 529
>gi|77553383|gb|ABA96179.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 770
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 12/184 (6%)
Query: 306 EALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
E L+ L E E L A T ++ + + + + VT +S ST NS + +Q G
Sbjct: 137 ELLDILQEDTEEILSAETATQKEDLIVMAISQQAANVT---ESGST----NSFIDEQVGM 189
Query: 366 PVTTTTQFQ----VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEW 421
+ +FQ V +ADGG + S QG F DF L+P+ DI+LG +W
Sbjct: 190 KMIGVEEFQHSLKVQIADGGQLICSKILPGCNWCMQGHSFKNDFKLIPLGSYDIILGMDW 249
Query: 422 LRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMA 481
L+ + D+ + ++F ++ Q ++L G AN I QL+ K G ++
Sbjct: 250 LQQHSPMQIDWIQKWVEFQYQNQLIRLHGIKKQSSTYANIS-IEQLVGMAKSGAIMYLVK 308
Query: 482 ITTS 485
I +
Sbjct: 309 IAET 312
>gi|22725995|gb|AAN04995.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1413
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 302 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 348
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 349 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 399
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 400 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 459
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 460 GMDWLARHRGVI--DCASRTIKLTNAKGEVV 488
>gi|28273360|gb|AAO38446.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|62733520|gb|AAX95637.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|108710593|gb|ABF98388.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1229
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 35 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 81
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 82 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 132
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 133 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 192
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 193 GMDWLARHRGVI--DCASRTIKLTNAKGEVV 221
>gi|62734156|gb|AAX96265.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550571|gb|ABA93368.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 41/209 (19%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQL---LLLDADIE 299
P P LP EQ +R + LCFNC+ KPGH +C P+ + + A +
Sbjct: 314 PAQPALP--------EQPKRLGEKPELCFNCN---KPGHTVGKCPKPRHAGPMFVQARVN 362
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
AE + PE + G P N+ K IL DS +TH F++
Sbjct: 363 HAS--AEEAQSAPEVI-------LGTFPVNSTPAK---------ILFDSGATHSFISKRF 404
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
A +G + GG ++++ C + V QG F + LL D++LG
Sbjct: 405 AGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSMTVEIQGLIFPANLILLESKDLDVILGM 464
Query: 420 EWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
+WL R G I D + T++ T KG+ V
Sbjct: 465 DWLTRHRGVI--DCASRTIKLTNVKGEVV 491
>gi|224119716|ref|XP_002331143.1| predicted protein [Populus trichocarpa]
gi|222873226|gb|EEF10357.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGT----------------- 161
++G + W+ LE + +W F ++L+T+FG D + T
Sbjct: 1 MEGKTLTWFQDLEASSSITSWDGFTQSLLTRFGPSILDDLMETLTRLHQTTTVEVYKSQF 60
Query: 162 -------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRI 214
+ L ES+ +SCFLSGLREDI V+ML P +L F + + QEE R
Sbjct: 61 EILSNQLKGLAESYKLSCFLSGLREDICFMVRMLNPFNLTVAFGMVKMQEENIVAFRRSS 120
Query: 215 PPRPSMSRPSPPLLNSSPTITK 236
+ RP P +SPT K
Sbjct: 121 RLGSTSPRPFP----NSPTSDK 138
>gi|15128451|dbj|BAB62635.1| putative polyprotein [Oryza sativa Japonica Group]
gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353682|gb|AAU44248.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 488 GMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|195613064|gb|ACG28362.1| hypothetical protein [Zea mays]
Length = 428
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 321 ALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYG---CPVTTTTQFQV 375
A+TG P + + G L H T+L D +TH F+++ A +YG CP+ + + +
Sbjct: 283 AVTGTIPYDDAVIFGTLVIHTTIATVLYDPRTTHSFISAQFATKYGIFKCPLRS--RKTI 340
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
+ +G ++ + C V V G F D ++ G D++LG WL+ A++ K
Sbjct: 341 STPEGKMLVNY-ICPKVSVKINGIDFSADLLVIESMGKDVILGKNWLQRTKAVIQHTEKT 399
Query: 436 TMQFTWKGQTVQLTGYDSLPPA 457
T G+T+ + D+ PPA
Sbjct: 400 MCLETPSGETIVVE--DNRPPA 419
>gi|242117542|dbj|BAH80025.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1727
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 32/225 (14%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S Q+ R+ +G +CFNC + PGH +C P+ + +A + + + +
Sbjct: 549 STQNQSVRKDQGSKPVICFNCGD---PGHYADKCPKPRRVK-NAPVPNNSNASAPKARVN 604
Query: 313 ETLEVSLK----ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVT 368
+ + G P N++ T+L DS +TH FL+ S A ++G V
Sbjct: 605 HVAAAEAQNAPDVVLGTFPVNSI---------PATVLFDSGATHSFLSKSFATKHGMEVV 655
Query: 369 TTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGA 427
+ + + G +SS+ C V + + F LL D++LG +WL R G
Sbjct: 656 SLGRPLLVNTPGNQVSSTRYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGV 715
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
I K+T+ + G+TV + S P +HG + NQ+ LQE
Sbjct: 716 IDCANRKVTLTNS-NGETVSF--FASSP---KSHGVVLNQVALQE 754
>gi|38345904|emb|CAE03548.2| OSJNBa0060D06.14 [Oryza sativa Japonica Group]
Length = 1458
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 488 GMDWLARHRGVI--DCASRTIKLTNAKGEVV 516
>gi|77550924|gb|ABA93721.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 435
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
E L +S +A+ G +RL+G +++H V +L+DS S+H F++ L + ++ T
Sbjct: 336 ELLAISKEAVLGTESSRIVRLQGLIERHEVLMLVDSGSSHSFISEQLVHRLQGVCSSVTP 395
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV 410
+V +ADGG++ S + S+ Q F D +LPV
Sbjct: 396 LKVKIADGGILQCSQEFSNCQWWIQAESFCTDLKVLPV 433
>gi|77555411|gb|ABA98207.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1562
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 368 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 414
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 415 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 465
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 466 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 525
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 526 GMDWLTRHRGVI--DCASRTIKLTNAKGEVV 554
>gi|116309548|emb|CAH66611.1| H0211A12.14 [Oryza sativa Indica Group]
Length = 486
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGAT--PQ 328
GLCFNCDE+F PGHRCK +L L A D +E E + +SL A+ G
Sbjct: 276 GLCFNCDEKFTPGHRCK--RLFWLYAPSADDNETNPPNAEDGDP-GISLYAMAGVRLPGS 332
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA 360
TM+L + + L+DS STH F+N+ +A
Sbjct: 333 ETMQLHITINGKRLVALLDSGSTHNFINADVA 364
>gi|110288688|gb|ABB46921.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1068
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ +P
Sbjct: 530 VQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRHV--------KNVPVPNNSNVPA 578
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 579 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSL 637
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + +G F LL D++LG +WL R G I
Sbjct: 638 GRPLLVNTPGNQVFSTRYCPSVTIEIEGVPFPSSLILLESKDLDVILGMDWLSRHRGVID 697
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P +HG + NQ+ LQE
Sbjct: 698 CANRKVTLTNS-NGETVSF--FASSP---KSHGVVLNQVALQE 734
>gi|16905208|gb|AAL31078.1|AC091749_7 putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 488 GMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|57834136|emb|CAE05577.3| OSJNBa0032N05.5 [Oryza sativa Japonica Group]
Length = 1790
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 606 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 647
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 648 GQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSF 704
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 705 ISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 764
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP A E++Q+ L E
Sbjct: 765 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSARSSELHQIELSE 817
>gi|110288888|gb|AAP53008.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1595
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 401 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 447
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 448 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 498
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 499 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 558
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 559 GMDWLTRHRGVI--DCASRTIKLTNAKGEVV 587
>gi|77555464|gb|ABA98260.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1360
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 361 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 407
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 408 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 458
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 459 RFAGAHGLSLVKLKIPMRVNTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 518
Query: 418 GAEWL-RSLGAILWDFSKLTMQFTW-KGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 519 GMDWLTRHRGVI--DCASRTIKLTHAKGEVV 547
>gi|336369588|gb|EGN97929.1| hypothetical protein SERLA73DRAFT_55870 [Serpula lacrymans var.
lacrymans S7.3]
Length = 231
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 46/200 (23%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRC----KAPQLLLLDADIED------------ 300
RRL+ E+ RR +G CF C+E+ G C K P+ + + ED
Sbjct: 44 RRLTKDEEESRRKEGRCFICNEKGHIGRNCRNKGKTPKRKVRQTETEDDTKTVVEEDRVQ 103
Query: 301 ----------KDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKH--GVTILIDS 348
+D++ EA++E + E ++ A N++R+ +LK+ G LIDS
Sbjct: 104 NIMRMWRELGEDQRTEAMKESED--EATINA-------NSLRIDCSLKQKTIGTKALIDS 154
Query: 349 SSTHIFLNSSLAKQYGCPV------TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
+T F+++ A ++ P+ T T G I+ C++ +++ G
Sbjct: 155 GATDDFMDTKFAIRHRLPLQKLPTPITCKNVDRTTNKNGKITH---CTYQRIDAGGQNRF 211
Query: 403 LDFFLLPVSGCDIVLGAEWL 422
F L + G D++LG WL
Sbjct: 212 TKFLLTGLDGEDVLLGFPWL 231
>gi|38567989|emb|CAE04032.2| OSJNBb0068N06.8 [Oryza sativa Japonica Group]
Length = 947
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 33/222 (14%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET--L 315
Q R A+G LCFNC FKPGH +C P + +Q +A P
Sbjct: 181 QGRRDAQGQQCLCFNC---FKPGHFADKCPKP-----------RRQQGQAPPR-PNNGGK 225
Query: 316 EVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+V+ + T ++ +R + G H + TIL DS ++H F++ + V
Sbjct: 226 DVTRGRVNHVTAEDVLRTPDIIVGTFLIHSIPATILFDSGASHSFISVPFMGRNQLGVER 285
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ GGV+++ VP+ QG F D LL D++LG WL ++
Sbjct: 286 LRNPLLITTPGGVMTAKYYSPAVPIEIQGIAFPSDLILLDTKNLDVILGMNWLAQFQGVV 345
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D ++ T+ ++G + + PP A ++QL L E
Sbjct: 346 -DCARRTVT-VYRGPDQPVVFF--APPTSAGSSVLHQLGLPE 383
>gi|77555397|gb|ABA98193.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1759
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 607 PPTPAVQP-------AQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 656
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++ S
Sbjct: 657 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVSF 710
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 711 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 770
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 771 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 818
>gi|62733821|gb|AAX95930.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550638|gb|ABA93435.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1169
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 30/204 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 396 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 442
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 443 AGPKFVQARVNHASAEEAQSATEVILGTFPVNST---------PAVILFDSGATHSFISK 493
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 494 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 553
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT 440
G +WL R G I D + T++ T
Sbjct: 554 GMDWLTRHRGVI--DCASRTIKLT 575
>gi|224164086|ref|XP_002338641.1| predicted protein [Populus trichocarpa]
gi|222873062|gb|EEF10193.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGT----------------- 161
++G + W+ LE + +W F ++L+T+FG D + T
Sbjct: 1 MEGKTLTWFQDLEASSSITSWDGFTQSLLTRFGPSILDDLMETLTRLHQTTTVEVYKSQF 60
Query: 162 -------QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR-- 212
+ L ES+ +SCFLSGLREDI V+ML P +L F + + QEE R
Sbjct: 61 EILSNQLKGLAESYKLSCFLSGLREDICFMVRMLNPFNLTVAFGMEKMQEENVVAFRRSS 120
Query: 213 ---RIPPRPSMSRPS 224
PRP + P+
Sbjct: 121 RLGSTSPRPFPNSPT 135
>gi|218198466|gb|EEC80893.1| hypothetical protein OsI_23536 [Oryza sativa Indica Group]
Length = 288
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 66/165 (40%), Gaps = 26/165 (15%)
Query: 75 PRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +L+F G ++P + + CEQ+ R + D + LA HL G A WY EQ
Sbjct: 90 PRFYKLEFPKFDGSDDPLNWLNHCEQFFRAQRSPDGDRVWLATYHLTGAAQEWYFHYEQH 149
Query: 134 MGNMTWAQFKRALVTQFGTFEDGDAVG-------------------------TQNLPESF 168
G W FK Q+G + +G T L E
Sbjct: 150 KGPPDWDTFKELCYAQYGPPIRNNPLGELKRLSQSTTVATYQQRFLALSSRVTDLLTERQ 209
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR 213
+ F GLR+DI I V++ +P L + LAR E A S R
Sbjct: 210 QVQLFTVGLRDDICIDVELHQPEDLQEAMGLARAYERKANFSPSR 254
>gi|19881536|gb|AAM00937.1|AC021892_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1052
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 619 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 671
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ S +
Sbjct: 672 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVSFVGR 725
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 726 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 785
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 786 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 830
>gi|116309189|emb|CAH66284.1| OSIGBa0161P06.1 [Oryza sativa Indica Group]
Length = 1665
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K A +P
Sbjct: 488 VQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KSASAPNNSSVPA 536
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 537 S-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSL 595
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 596 GRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVID 655
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P +HG + NQ+ LQE
Sbjct: 656 CANRKVTLTSS-SGETVSF--FASSP---KSHGVVLNQVALQE 692
>gi|54287641|gb|AAV31385.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1493
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 331 PSSLKIPAQSVQP----ALPEQPKRLGEKPKLCFNCN---KPGHTVGKCPKPR------R 377
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 378 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTL---------AVILFDSGATHSFISK 428
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 429 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 488
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 489 GMDWLTRHRGVI--DCASRTIKLTNAKGEEV 517
>gi|147767540|emb|CAN66709.1| hypothetical protein VITISV_006396 [Vitis vinifera]
Length = 1133
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 290 QLLLLDADIED--KDEQAEALEELPE---TLEVSLKALTGATPQNTMRLKGNLKKHGVTI 344
+L +++A +D DE + + E+ + E+SL A G NT + G+ + +
Sbjct: 1002 RLFMIEATCDDSENDEDMKIVSEVQQEDVKPEISLHATAGLKAPNTTTMTGSFLFQPMEV 1061
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD 404
LIDS STH F++ +A+ G + + +V VA G + S G CS+V + Q +
Sbjct: 1062 LIDSGSTHNFISVLVAECVGFNLKQDRKMEVMVASGEKLVSLGSCSNVQLKLQKVTIVVK 1121
Query: 405 FFLLPVSGCDIV 416
F +LP+ D+V
Sbjct: 1122 FLVLPLEDFDVV 1133
>gi|110289611|gb|AAP55099.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1565
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 398 LCFNCN---KPGHTVGKCPKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPV 448
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 449 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 499
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 500 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 557
>gi|62733354|gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|108864031|gb|ABG22378.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1441
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 358 LCFNCN---KPGHTVGKCPKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPV 408
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 409 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 459
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 460 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 517
>gi|116317875|emb|CAH65904.1| H0207B04.5 [Oryza sativa Indica Group]
Length = 1481
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A +P + + + A Q
Sbjct: 319 ICFNCGD---PGHYADKCPKPRRV--------KNAPASTNSNVPAP-KARVNHVAAAEAQ 366
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A ++G V + + + G + S
Sbjct: 367 NAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFS 426
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C V + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 427 TQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS-NGE 485
Query: 445 TVQLTGYDSLPPALANHGEI-NQLLLQE 471
TV + S P +HG I NQ+ LQE
Sbjct: 486 TVSF--FASSP---KSHGVILNQVALQE 508
>gi|222615969|gb|EEE52101.1| hypothetical protein OsJ_33892 [Oryza sativa Japonica Group]
Length = 271
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
E L +S +A+ G +RL+G +++H V +L+DS S+H F++ L + ++ T
Sbjct: 172 ELLAISKEAVLGTESSRIVRLQGLIERHEVLMLVDSGSSHSFISEQLVHRLQGVCSSVTP 231
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV 410
+V +ADGG++ S + S+ Q F D +LPV
Sbjct: 232 LKVKIADGGILQCSQEFSNCQWWIQAESFCTDLKVLPV 269
>gi|50878352|gb|AAT85127.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALPEQPKRLGEKPKLCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGSIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 488 GMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|147767990|emb|CAN67159.1| hypothetical protein VITISV_039497 [Vitis vinifera]
Length = 711
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 20/106 (18%)
Query: 348 SSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFL 407
S STH F++ +A PV T F V VA+G + G+ HV V
Sbjct: 212 SGSTHNFISEKVADMLHLPVVPTKPFTVKVANGTPLKCQGRFEHVHV------------- 258
Query: 408 LPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
I+ G +WL LG ++ ++ KLTM F W+ QT +L G ++
Sbjct: 259 -------ILQGVQWLEQLGIVVCNWKKLTMVFQWENQTHKLQGTNT 297
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 137 MTWAQFKRALVTQFG--TFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLL 194
+ WA F+ L +FG ED D ++ L + F+ L+ +I + M KP SL
Sbjct: 103 VAWADFEEELWARFGPTECEDFDEALSRAL-----VGTFMGSLKSEIADDIWMFKPKSLK 157
Query: 195 QTFELARFQEEYAAVSNRRIPP-RPSMSRPS-PPLLNSSPTIT 235
+ LAR +++ R P +P+ +P + S PT+T
Sbjct: 158 EAISLARMRDDQLTRQRRFTRPLQPNCPQPDFSSQMKSKPTLT 200
>gi|108862521|gb|ABA97778.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1557
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 30/204 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 401 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 447
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 448 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 498
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 499 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVIL 558
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT 440
G +WL R G I D + T++ T
Sbjct: 559 GMDWLTRHRGVI--DCASRTIKLT 580
>gi|108864417|gb|ABA93974.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1343
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALPEQPKRLGEKPELCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGSIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 488 GMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|22725933|gb|AAN04943.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431094|gb|AAP52925.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 619 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 671
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ S +
Sbjct: 672 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVSFVGR 725
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 726 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 785
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 786 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 830
>gi|62732706|gb|AAX94825.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550391|gb|ABA93188.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 574
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+E PGH C P+ L K QA E + + + G P
Sbjct: 322 LCFNCNE---PGHMVRTCPKPRRAGL------KFVQARVNHVYTEEAQSAPDVILGTFPV 372
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 373 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 423
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW-KGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 424 CPLVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCTSRTIKLTSEKGEVV 481
>gi|54287629|gb|AAV31373.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2408
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 26/209 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + K+ A P + + + A
Sbjct: 318 GVCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNAPAP-KARVNHVAAAEA 365
Query: 328 QNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
QN + G + + ++L DS +TH FL+ S A YG V + + + G +
Sbjct: 366 QNAPDVVLGTFPVNSIPASVLFDSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGNQVF 425
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKG 443
S+ C + + F LL D++LG +WL R G I K+T+ + G
Sbjct: 426 STQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANCKVTLTSS-NG 484
Query: 444 QTVQLTGYDSLPPALANHGEI-NQLLLQE 471
+TV + S P HG I NQ+ LQE
Sbjct: 485 ETVSF--FVSSP---KYHGVILNQVALQE 508
>gi|19225016|gb|AAL86492.1|AC077693_31 putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 357 LCFNCN---KPGHTVGKCPKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPV 407
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 408 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 458
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 459 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|51038165|gb|AAT93968.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51038205|gb|AAT94008.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1500
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 333 LCFNCN---KPGHTVGKCPKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPV 383
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 384 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 434
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 435 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 492
>gi|62734481|gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550403|gb|ABA93200.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1640
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAE--------ALEELPETLEVSL 319
G+CFNC + PGH +C P+ + +A +++ A+ E +V L
Sbjct: 631 GVCFNCGD---PGHYADKCPKPRCVK-NAPVQNNSNAPAPKARVNHVAVAEAQNAPDVVL 686
Query: 320 KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
G P N++ +L DS +TH FL+ S A +G V + + +
Sbjct: 687 ----GTFPVNSI---------PAFVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTP 733
Query: 380 GGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQ 438
G +SS+ C V + + F LL D++LG +WL R G I K+T+
Sbjct: 734 GNQVSSTQYCPSVTIEIEEIPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLT 793
Query: 439 FTWKGQTVQLTGYDSLPPALANHG-EINQLLLQE 471
+ G+TV + S P +HG +NQ+ LQE
Sbjct: 794 SS-NGETVSF--FVSSP---KSHGLTLNQVALQE 821
>gi|224123142|ref|XP_002330349.1| predicted protein [Populus trichocarpa]
gi|222871553|gb|EEF08684.1| predicted protein [Populus trichocarpa]
Length = 171
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR--RIPPRP-SM 220
LPES++IS F+SGL+EDIK ++LKP +L+ TF+ A++Q+E V R + PRP ++
Sbjct: 85 LPESYYISSFISGLKEDIKPMSKILKPVTLMTTFDQAKWQKESNNVLARKNKFMPRPAAV 144
Query: 221 SRP 223
RP
Sbjct: 145 GRP 147
>gi|255571683|ref|XP_002526785.1| conserved hypothetical protein [Ricinus communis]
gi|223533861|gb|EEF35591.1| conserved hypothetical protein [Ricinus communis]
Length = 102
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 266 ERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
E RAKGLCFNCDE+F+ HRCK +L L+ AE E E +SL A+
Sbjct: 3 EIRAKGLCFNCDEKFEIRHRCK--KLFWLEV-------LAEEDEPDDEEPAISLHAIFDI 53
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQ 362
TM+++G + + +LIDS ST F+N +L Q
Sbjct: 54 QTTQTMQVEGIINGFPLLVLIDSGSTPRFVNEALIHQ 90
>gi|48843822|gb|AAT47081.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH---RCKAPQLLLLDAD 297
PS L P + P ++ EQ +R + LCFNC+ KPGH +C P+
Sbjct: 330 PSSLKIPAQSVQP----ALPEQPKRLVEKPELCFNCN---KPGHTVGKCPKPR------R 376
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
K QA E + + + + G P N+ IL DS +TH F++
Sbjct: 377 AGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PAVILFDSGATHSFISK 427
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
A +G + GG ++++ C V V QG F + LL D++L
Sbjct: 428 RFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGSIFPANLILLESKDLDVIL 487
Query: 418 GAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
G +WL R G I D + T++ T KG+ V
Sbjct: 488 GMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|116311093|emb|CAH68022.1| H0807C06-H0308C08.9 [Oryza sativa Indica Group]
Length = 1804
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 648 PPTPAVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 697
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 698 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 751
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 752 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 811
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP A E++Q+ L E
Sbjct: 812 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSARSSELHQIELSE 859
>gi|19881768|gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1449
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ +P
Sbjct: 272 VQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRHV--------KNVPVPNNSNVPA 320
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 321 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSL 379
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + +G F LL D++LG +WL R G I
Sbjct: 380 GRPLLVNTPGNQVFSTRYCPSVTIEIEGVPFPSSLILLESKDLDVILGMDWLSRHRGVID 439
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P +HG + NQ+ LQE
Sbjct: 440 CANRKVTLTNS-NGETVSF--FASSP---KSHGVVLNQVALQE 476
>gi|108708773|gb|ABF96568.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1548
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 395 LCFNCN---KPGHTVGKCSKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPV 445
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 446 NST---------PAVILFDSGATHSFISKLFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 496
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 497 CPAVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 554
>gi|77553962|gb|ABA96758.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 602 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 640
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 641 RQQGQAP---PRSSNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 697
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ S VP+ QG F D LL
Sbjct: 698 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSSAVPIEIQGIPFPSDLILLDTK 757
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 758 NLDVILGMNWLAQFQGVM-DCARRTVTL-YRGPEQPVVFF--APPTSVKSSELHQIGLSE 813
>gi|28209485|gb|AAO37503.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1079
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 357 LCFNCN---KPGHTVGKCSKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPV 407
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 408 NST---------PAVILFDSGATHSFISKLFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 458
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 459 CPAVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 516
>gi|15230067|ref|NP_189618.1| aspartyl protease-like protein [Arabidopsis thaliana]
gi|332644083|gb|AEE77604.1| aspartyl protease-like protein [Arabidopsis thaliana]
Length = 421
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 306 EALEELPETLEVSLKALTGATPQNT-MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
E LE+ TL ++ L +N MR G + H V + IDS +T F+ LA
Sbjct: 98 EELEQDSYTLRQGMEQLVIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFSLK 157
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV--SGCDIVLGAEWL 422
P + T Q V + I S G C + + Q + +F LL + + D++LG EWL
Sbjct: 158 LPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYEWL 217
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQL 467
LG + ++ F+ Q + L A H E+ Q+
Sbjct: 218 SKLGETMVNWQNQDFSFSHNQQWITLC---------AEHEELEQV 253
>gi|222636869|gb|EEE67001.1| hypothetical protein OsJ_23913 [Oryza sativa Japonica Group]
Length = 877
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDF 432
+ +A+G + S G C ++ +N G F +D F L + DI+LG +WL++LG ILWDF
Sbjct: 665 LRFVMANGDRLVSPGLCRNLALNIDGEAFSVDCFALDLCAVDIILGMQWLQTLGPILWDF 724
Query: 433 SKLTMQFTWK 442
+ M W+
Sbjct: 725 KNMRMAI-WR 733
>gi|87162498|gb|ABD28293.1| RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger,
CCHC-type; Peptidase aspartic, active site;
Retrotransposon gag protein [Medicago truncatula]
Length = 912
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 123/335 (36%), Gaps = 56/335 (16%)
Query: 129 WLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISC--FLSGLREDIK--IG 184
+LE GNM+ ++ V + A + F C F +GLR DIK IG
Sbjct: 123 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAE------FSRCIKFENGLRPDIKRAIG 176
Query: 185 VQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPS 244
Q L+ L R EE + + R + S P S+P G
Sbjct: 177 YQQLRVFQDL--VNSCRIYEENTKAHYKVVNERNGKGQQSRPKPYSAPA--DKGKQKMVD 232
Query: 245 LLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDE----------QFKPGHRCKAPQLLLL 294
+ P + + + +CFNC E + K RC ++
Sbjct: 233 VRRP---------------KKKDAVEIVCFNCGEKGHKSNVYPEEIKKCVRCGKKGHVVA 277
Query: 295 DADIEDK-----------DEQAEALEELPETLEVSLKALTGATPQNTMRL-KGN--LKKH 340
D + D Q + P T V ALTG +N RL +G +
Sbjct: 278 DCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVF--ALTGTQTENEDRLIRGTCYISNT 335
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSGKCSHVPVNSQGF 399
+ +ID+ +TH F+ G ++ + V G +++S C P++ G
Sbjct: 336 PLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGR 395
Query: 400 QFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
F +D LP+SG D++LG WL ++ FSK
Sbjct: 396 DFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSK 430
>gi|58532066|emb|CAI44654.1| OSJNBa0004L19.17 [Oryza sativa Japonica Group]
Length = 1370
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 627 PPTPTVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 676
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + + LT TP + G H + TIL DS ++H F++
Sbjct: 677 NGGKDVIRGRVNHV-TAEDVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 730
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 731 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 790
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 791 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTFVRSSELHQISLSE 838
>gi|77555436|gb|ABA98232.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1522
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 92/226 (40%), Gaps = 39/226 (17%)
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG--LCFNCDEQFKPGH- 284
LN +P++ S P P LP EQ +R + LCFNC++ PGH
Sbjct: 321 LNPTPSLLMIPAQSD----QPAQPALP--------EQPKRLGEKPELCFNCNQ---PGHT 365
Query: 285 --RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV 342
+C P+ K QA E + + + + G P N+
Sbjct: 366 VGKCPKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PA 410
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
IL DS +TH F++ A +G + GG ++++ C V V QG F
Sbjct: 411 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPAVTVEIQGLIFP 470
Query: 403 LDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
+ LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 471 ANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 514
>gi|255550984|ref|XP_002516540.1| conserved hypothetical protein [Ricinus communis]
gi|223544360|gb|EEF45881.1| conserved hypothetical protein [Ricinus communis]
Length = 222
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 32/147 (21%)
Query: 142 FKRAL--VTQFGTFED--------GDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPA 191
F AL VTQ G+ D G+ V Q + + F+ GL+ +I G++M K
Sbjct: 98 FDEALSRVTQRGSLRDYQKEFEKLGNKV--QGWTQRALVGTFIGGLKPEIAEGIRMFKLQ 155
Query: 192 SLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPP 251
SL + LAR ++E + R ++RP LN T T +++ +
Sbjct: 156 SLKEAISLARMRDEQLIRTWR-------LTRP----LNKPTVETITSDAAKIT------- 197
Query: 252 GLPPFRRLSVAEQTERRAKGLCFNCDE 278
P +RLS E +RRA+GLCFNCDE
Sbjct: 198 --PATKRLSWEEMQKRRAQGLCFNCDE 222
>gi|91805527|gb|ABE65492.1| hypothetical protein At3g29750 [Arabidopsis thaliana]
Length = 259
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 304 QAEALEELPETLEVSLKALTGATPQNT-MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQ 362
+ E LE+ TL ++ L +N MR G + H V + IDS +T F+ LA
Sbjct: 22 ELEELEQDSYTLRQGMEQLVIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFS 81
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV--SGCDIVLGAE 420
P + T Q V + I S G C + + Q + +F LL + + D++LG E
Sbjct: 82 LKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYE 141
Query: 421 WLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQL 467
WL LG + W+ Q + A H E+ Q+
Sbjct: 142 WLSKLGETM---------VNWQNQDFSFSHNQQWITLCAEHEELEQV 179
>gi|357470935|ref|XP_003605752.1| Pol polyprotein [Medicago truncatula]
gi|355506807|gb|AES87949.1| Pol polyprotein [Medicago truncatula]
Length = 745
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 120/325 (36%), Gaps = 36/325 (11%)
Query: 129 WLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISC--FLSGLREDIK--IG 184
+LE GNM+ ++ V + A + F C F +GLR DIK IG
Sbjct: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAE------FSRCIKFENGLRPDIKRAIG 187
Query: 185 VQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPS 244
Q L+ L R EE + + R + S P S+P G
Sbjct: 188 YQQLRVFQDL--VNSCRIYEEDTKAHYKVVNERKGKGQQSRPKPYSAPA--DKGKQKMVD 243
Query: 245 LLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDK--- 301
+ P + E+ + C E+ K RC ++ D + D
Sbjct: 244 VRRPKKKDAAEIVYFNCGEKGHKSNA-----CPEEIKKCVRCGKKGHVVADCNRTDIVCF 298
Query: 302 --------DEQAEALEELPETLEVSLKALTGATPQNTMRL-KGN--LKKHGVTILIDSSS 350
Q + P T V ALTG ++ RL +G + + +ID+ +
Sbjct: 299 NCNGEGHISSQCTQPKRAPTTGRVF--ALTGTQTESEDRLIRGTCYINNTPLVAIIDTGA 356
Query: 351 THIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLP 409
TH F+ G ++ + V G +++S C P++ G F +D LP
Sbjct: 357 THCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLP 416
Query: 410 VSGCDIVLGAEWLRSLGAILWDFSK 434
+SG D++LG WL ++ FSK
Sbjct: 417 LSGMDVILGMNWLEYNHVLINCFSK 441
>gi|125570510|gb|EAZ12025.1| hypothetical protein OsJ_01904 [Oryza sativa Japonica Group]
Length = 272
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 65 AGRIGGALVQPRHIRLDFLVL-SGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDA 123
+G GG + PR+ +L+F S E+P + + CEQ+ D + LA HL G+A
Sbjct: 78 SGNNGGGV--PRYYKLEFPKFDSKEDPLNWLNHCEQFFHGQRTDAGDRVWLATYHLTGNA 135
Query: 124 VPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVG-----TQNLPESFFISCFL---- 174
WY EQ G W FK QFG + +G TQ + + FL
Sbjct: 136 QEWYFHHEQHKGPPDWDTFKDLCYAQFGPPIRHNPLGELKRLTQTTTVAAYQCRFLALAS 195
Query: 175 ----------------SGLREDIKIGVQMLKPASLLQTFELARFQEEYA 207
+GLRED+ I V++ +P L + LAR E A
Sbjct: 196 RTAELLTENQQVQLLTAGLREDLAIDVEINRPDDLQEAMSLARAFERKA 244
>gi|77556493|gb|ABA99289.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 621 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRHQGQAPPRSNNGG 673
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 674 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 727
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 728 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 787
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 788 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 832
>gi|62733127|gb|AAX95244.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734031|gb|AAX96140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550685|gb|ABA93482.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1567
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 34/235 (14%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 680 PPTPAVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 729
Query: 302 DEQAEALEE-----LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ + + + E + + + G P +++ TIL DS ++H F++
Sbjct: 730 NGGKDVIRGRVNHVMAEDVLTTPDVIFGTFPIHSI---------PATILFDSGASHSFMS 780
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
+ V + GGV+++ VP+ QG F D LL D++
Sbjct: 781 VPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSHAVPIEIQGIPFLSDLILLDTKNLDVI 840
Query: 417 LGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 841 LGMNWLAQFQGVV-DCARRTITL-YRGPEQPVVFF--APPTSVGSSELHQIKLSE 891
>gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431096|gb|AAP52927.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1825
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 641 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHYADKCPKP-----------R 679
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + + G H + TIL DS ++
Sbjct: 680 RQQGQAP---PRSNNGGKDVIRGRVNHVTAKDVLTTPDVIVGTFLVHSIPATILFDSGAS 736
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 737 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 796
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + +PP E++Q+ L E
Sbjct: 797 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--VPPTSVKSSELHQIGLSE 852
>gi|116309037|emb|CAH66150.1| OSIGBa0097I11.2 [Oryza sativa Indica Group]
Length = 1527
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 30/224 (13%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 563 STQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNASAPNNSNVP 611
Query: 313 ETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 612 AP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVS 670
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 671 LGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVI 730
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P + HG + NQ+ LQE
Sbjct: 731 DCANRKVTLTNS-NGETVSF--FASSPKS---HGVVLNQVALQE 768
>gi|77555355|gb|ABA98151.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1281
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 26/209 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + K+ A +P + + + A
Sbjct: 318 GVCFNCGD---PGHYADKCPKPRRV--------KNAPASNNSSVPAP-KARVNHVAAAEA 365
Query: 328 QNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
QN + G + + ++L DS +TH FL+ S A +G V + + + G +S
Sbjct: 366 QNAPDVVLGTFPVNSIPASMLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNPPGNQVS 425
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKG 443
S+ C + + F LL DI+LG +WL R G I K+T+ + G
Sbjct: 426 STQYCPSATIEIEKVPFPSSLILLESKDLDIILGMDWLSRHRGVIDCANRKVTLTSS-NG 484
Query: 444 QTVQLTGYDSLPPALANHGEI-NQLLLQE 471
+TV + S P HG I NQ+ LQE
Sbjct: 485 ETVSF--FVSSP---KYHGVILNQVALQE 508
>gi|22138463|gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group]
gi|78708018|gb|ABB46993.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1499
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 315 PPTPTVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 353
Query: 302 DEQAEALEELPET----LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSST 351
+Q +A P + +VS + T ++ + + G H + TIL DS ++
Sbjct: 354 RQQGQAP---PRSNNGGKDVSRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 410
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 411 HSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 470
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 471 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVVF--APPTSVRSSELHQIGLSE 526
>gi|255570161|ref|XP_002526041.1| conserved hypothetical protein [Ricinus communis]
gi|223534622|gb|EEF36318.1| conserved hypothetical protein [Ricinus communis]
Length = 106
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
S P +SSPT +KT P + LS E +++A+GLCFN D +F G
Sbjct: 17 SKPTFDSSPTKSKTAT---------------PIKCLSWEEMQKKQAQGLCFNYDAKFVLG 61
Query: 284 HRCKAPQLLLLD 295
HRCK PQ LLLD
Sbjct: 62 HRCKEPQFLLLD 73
>gi|217073570|gb|ACJ85145.1| unknown [Medicago truncatula]
gi|388517775|gb|AFK46949.1| unknown [Medicago truncatula]
Length = 185
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Query: 266 ERRAKGLCFNCDEQFKPG-HRCKAPQLLLLDADIEDKDEQAEALEELPETLEVS------ 318
ERRAKGLCF C ++ P H+C L +L + + + L +
Sbjct: 3 ERRAKGLCFKCGGKYHPTLHKCPEKSLRVLILGEGEGVNEEGEIVSLETQEVLEEEEEEI 62
Query: 319 ------LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ L NTM++ G L+ V +L+DS +TH F+++ L G +T
Sbjct: 63 ESECKVIGVLGSMGEYNTMKIGGKLENIDVVVLVDSGATHNFISAKLTSALGLTITPMAA 122
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQF 401
++ + DG + S G C +G F
Sbjct: 123 RKIKLGDGHEVLSQGVCKGREGTKEGSVF 151
>gi|116830535|gb|ABK28225.1| unknown [Arabidopsis thaliana]
Length = 260
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 304 QAEALEELPETLEVSLKALTGATPQNT-MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQ 362
+ E LE+ TL ++ L +N MR G + H V + IDS +T F+ LA
Sbjct: 22 ELEELEQDSYTLRQGMEQLVIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFS 81
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV--SGCDIVLGAE 420
P + T Q V + I S G C + + Q + +F LL + + D++LG E
Sbjct: 82 LKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYE 141
Query: 421 WLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQL 467
WL LG + W+ Q + A H E+ Q+
Sbjct: 142 WLSKLGETM---------VNWQNQDFSFSHNQQWITLCAEHEELEQV 179
>gi|116309187|emb|CAH66283.1| OSIGBa0116O04.5 [Oryza sativa Indica Group]
Length = 1477
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 30/224 (13%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 513 STQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNASAPNNSNVP 561
Query: 313 ETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 562 AP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVS 620
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 621 LGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVI 680
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P + HG + NQ+ LQE
Sbjct: 681 DCANRKVTLTNS-NGETVSF--FASSPKS---HGVVLNQVALQE 718
>gi|21741597|emb|CAD39713.1| OSJNBa0052P16.18 [Oryza sativa Japonica Group]
Length = 1804
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q+ R A G LCFNC F+PGH +C P +
Sbjct: 620 PPTPAVQPV-------QSRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 658
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 659 RQQGQAP---PRSNNGGQDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 715
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 716 HSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 775
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 776 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 831
>gi|242117543|dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1666
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 527 VQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNASAPNNSNVPA 575
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 576 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSL 634
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 635 GRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVID 694
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+++ + G+TV + S P +HG + NQ+ LQE
Sbjct: 695 CANRKVSLTNS-NGETVSF--FASSP---KSHGVVLNQVALQE 731
>gi|116309186|emb|CAH66282.1| OSIGBa0116O04.4 [Oryza sativa Indica Group]
Length = 1527
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 30/224 (13%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 563 STQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNASAPNNSNVP 611
Query: 313 ETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 612 AP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVS 670
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 671 LGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVI 730
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P + HG + NQ+ LQE
Sbjct: 731 DCANRKVTLTNS-NGETVSF--FASSPKS---HGVVLNQVALQE 768
>gi|70720828|emb|CAI44646.2| OSJNBa0057M08.21 [Oryza sativa Japonica Group]
Length = 1202
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 519 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 571
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 572 KDVIRGRVNHV-TAEDVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 625
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 626 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 685
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 686 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 730
>gi|108862284|gb|ABA96071.2| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|215767385|dbj|BAG99613.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 282
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 174 LSGLREDIKIGVQMLKPASLLQTFELARFQE------------EYAAVSNRRIPPRPSMS 221
++ L +K V + +P++L LA+ E E A + R + P PS +
Sbjct: 1 MASLVNPLKTDVALRRPSTLDDAIMLAQAYEQRLHLGATDPIPERAVRALRMVLPAPSTA 60
Query: 222 RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFK 281
+P S+ + T QP + P + LS E +RR +GLC+NC E++
Sbjct: 61 SSTP----STDAASTTASGKQPLVAALP------RKHLSPVEMAQRRTEGLCYNCHEKYV 110
Query: 282 PGHRCKAP---QLLLLDADIEDKDEQAEALEEL---PETLEVSLKALTG--ATPQNTMRL 333
G C+ +++ D E +D+ A + L +SL AL G A NT+++
Sbjct: 111 SGQHCEKSFIIEVISFPDDTEGEDDPPPAANTILADAGKLLISLHALAGIRALMFNTIKV 170
Query: 334 KGNLKKHGVTILIDSSSTHIFLNSSLA 360
+ L+DS S H FL+ ++A
Sbjct: 171 CACVGTVDYLALLDSGSMHNFLSETVA 197
>gi|116309038|emb|CAH66151.1| OSIGBa0097I11.3 [Oryza sativa Indica Group]
Length = 1477
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 30/224 (13%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 513 STQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNASAPNNSNVP 561
Query: 313 ETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 562 AP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVS 620
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 621 LGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVI 680
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P + HG + NQ+ LQE
Sbjct: 681 DCANRKVTLTNS-NGETVSF--FASSPKS---HGVVLNQVALQE 718
>gi|226507669|ref|NP_001140639.1| uncharacterized protein LOC100272714 [Zea mays]
gi|194700296|gb|ACF84232.1| unknown [Zea mays]
Length = 459
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 317 VSLKALTGATPQNTMRLKGNLKKHGVTIL--IDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
V KA++G T + M+++G L K+ VT+L I S S F+N +L + + +
Sbjct: 306 VKAKAISGTTGKGCMKVRG-LLKNKVTLLLSIHSGSPTCFINKNLVARARLSAVSCPPAR 364
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
T+A+G ++S + + G FH D +L + D +LG +WL+S + D++
Sbjct: 365 FTLANGESLTSDLLVPQLAWCANGHTFHTDMRVLDLGPYDAILGYDWLKSHSPMECDWAN 424
Query: 435 LTMQFTWKGQTVQLTGYD 452
+ F G V L G D
Sbjct: 425 KVLVFHDAGVEVTLKGDD 442
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 37/169 (21%)
Query: 80 LDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWY--HWLEQTMGNM 137
+ F G NP + +C Y + + E + +A HL+G A W+ H L+Q G
Sbjct: 131 MSFPKFDGANPRVWLDKCLDYFHIFKVSEAMWVQVASLHLEGIAARWFHVHRLKQRTG-- 188
Query: 138 TWAQFKRALVTQFG-------------------------TFEDGDAVGTQNLP---ESFF 169
W F R ++ +FG FE+ + + + P E F
Sbjct: 189 -WNHFTRDVLNKFGADEYPKAMRRLMGLRQTGSLDEFVRAFEEARYMVSLHNPKLGEVLF 247
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE----YAAVSNRRI 214
++ F+ GL D++ VQ P +L + +A+ Q+E Y S R +
Sbjct: 248 VTQFIWGLEYDLQGAVQSQMPTTLDRAVLIAKLQDELNDQYKGRSTRSV 296
>gi|38567864|emb|CAE03017.3| OSJNBa0091D06.2 [Oryza sativa Japonica Group]
Length = 877
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 47/249 (18%)
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEY-------------AAVSNRRI 214
+F++ F+ GLR DI++ V + +P L T + QEE +++ R
Sbjct: 242 YFVTKFVEGLRSDIRVVVLVQRPQDLDSTCAITLLQEEALEGIKFNQYRKPDSSIPVRSF 301
Query: 215 PPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCF 274
P+++ + P +P T+ ++ + +L+ A ++ RR+KGLCF
Sbjct: 302 QKTPALAHTATPQKQFTPQHTEDKRGTESARARE--------EKLA-ALKSYRRSKGLCF 352
Query: 275 NCDEQFKPGHRCKAPQLLLLDADIED--KDEQAEALEELP-----ETLEVSLKALTGATP 327
C E++ H+C + L + ++ D +DE + E P + + +S +AL G
Sbjct: 353 TCGERWSRDHKCGSAVQLHVVQELLDALQDETPDGDPETPSDSNSDLMAISQQALWGTES 412
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCP------VTTTTQFQVTVADGG 381
++RL+G ++ + +L+ LA GC ++ + ++ + G
Sbjct: 413 SKSIRLRGLVQGSELLMLL------------LAVDGGCKDLISSVISDCSIWEAMILSLG 460
Query: 382 VISSSGKCS 390
++ + CS
Sbjct: 461 IVPQTTHCS 469
>gi|116309457|emb|CAH66529.1| H0502B11.9 [Oryza sativa Indica Group]
Length = 1450
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 31/183 (16%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
LCFNC+E PGH +C P+ + A + AE + PE + G
Sbjct: 283 LCFNCNE---PGHTVGKCPKPRRAGPKFVQACVNHAS--AEEAQSAPEVI-------LGT 330
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
P N+ IL DS +TH F++ A +G + GG +++
Sbjct: 331 FPVNST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTT 381
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKG 443
+ C V V QG F + LL D++LG +WL R G I D + T++ T KG
Sbjct: 382 THYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKG 439
Query: 444 QTV 446
+ V
Sbjct: 440 EVV 442
>gi|54287627|gb|AAV31371.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 636 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 685
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 686 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 739
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 740 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 799
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP A+ E++Q+ L E
Sbjct: 800 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSASSSELHQIGLSE 847
>gi|116309157|emb|CAH66257.1| OSIGBa0139I12.6 [Oryza sativa Indica Group]
Length = 1443
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 266 VQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNVPAPNNSNVPA 314
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 315 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGIEVVSL 373
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 374 GRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVID 433
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P + HG I NQ+ LQE
Sbjct: 434 CANRKVTLTSS-SGETVSF--FASSPKS---HGVILNQVALQE 470
>gi|110289019|gb|ABB47436.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1504
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 89/240 (37%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 320 PPTPTVQP-------GQGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 358
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 359 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 415
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 416 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 475
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D+VLG WL ++ + + GQ V PP + E++Q+ L E
Sbjct: 476 NLDVVLGMNWLAQFQGVVDCARRTVTLYRGPGQPVVFFA----PPTSVSSSELHQIGLSE 531
>gi|77556043|gb|ABA98839.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1756
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 619 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 671
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 672 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGK 725
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 726 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 785
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 786 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 830
>gi|108862645|gb|ABA98103.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 896
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + + G +SS+ C + + + F
Sbjct: 254 ATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVSSTQYCPSITIEIEEITF 313
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
LL D++LG +WL R G I + K+T+ + GQT+ +L +
Sbjct: 314 PSTLMLLESKDLDVILGMDWLIRHRGIIDFANHKVTIT-SSNGQTMSF-----FVSSLRS 367
Query: 461 HG-EINQLLLQE 471
HG +NQ+ LQE
Sbjct: 368 HGLTLNQVALQE 379
>gi|22539073|gb|AAN01245.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431331|gb|AAP53126.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1785
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 601 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 653
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 654 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGK 707
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 708 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 767
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 768 AQFQGVV-DCARRTVTL-YRGPEQSVVFF--APPTSVRSSELHQIELSE 812
>gi|54291803|gb|AAV32172.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 24/229 (10%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P RR + +Q LCFNC F+PGH +C P+ A +
Sbjct: 638 PPTPTVQPGRRDAQGQQR------LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 688
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 689 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 742
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP++ QG D LL D++LG WL
Sbjct: 743 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIDIQGIPLPSDLILLDTKNLDVILGMNWL 802
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 803 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 847
>gi|54291835|gb|AAV32203.1| unknown protein [Oryza sativa Japonica Group]
Length = 434
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%)
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
+ G ++ + IL+DS S+ FLNS++A Q V VA+G ++ + ++
Sbjct: 1 MVGQIQGLEILILVDSGSSVSFLNSTIADNLKNVQRKPQQISVQVANGNILHCTSAITNC 60
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYD 452
++QG+ F+ +L ++ D++LG +WL + +++ + + KGQ + L G +
Sbjct: 61 QWSTQGYVFNTTLRVLSLNSYDLILGMDWLTEHSPMTVNWATKQLTVSLKGQFILLQGIN 120
Query: 453 S 453
S
Sbjct: 121 S 121
>gi|37991885|gb|AAR06331.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1184
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 243 LCFNCN---KPGHTVGKCPKPR------HAGPKFVQAHVNHASAEEAQSAPEVILGTFPV 293
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 294 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 344
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL I D + T++ T KG+ V
Sbjct: 345 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRVI--DCTSHTIKLTNAKGEVV 401
>gi|110288804|gb|ABG65986.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1840
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 656 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 697
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 698 GQAP---PRSNNGGKDVIRGRVNHVTAEDELTTPDVIVGTFLVHSIPATILFDSGASHSF 754
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 755 ISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 814
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 815 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 867
>gi|22711558|gb|AAM01161.2|AC113336_13 Putative retroelement [Oryza sativa Japonica Group]
gi|78707943|gb|ABB46918.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1661
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q RR +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 616 VQNQPVRREQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNAPAPNNFNVPA 664
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL S A ++G V +
Sbjct: 665 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLCKSFAIKHGMEVVSL 723
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G S+ C V + + F LL D++LG +WL R G I
Sbjct: 724 GRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVID 783
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P +HGE+ NQ+ LQE
Sbjct: 784 CANRKVTLTSS-NGETVSF--FASSP---KSHGEVLNQVALQE 820
>gi|108709591|gb|ABF97386.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1200
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 243 LCFNCN---KPGHTVGKCPKPR------HAGPKFVQAHVNHASAEEAQSAPEVILGTFPV 293
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH F++ A +G + GG ++++
Sbjct: 294 NST---------PAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 344
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL I D + T++ T KG+ V
Sbjct: 345 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRVI--DCTSHTIKLTNAKGEVV 401
>gi|58532059|emb|CAD40391.3| OSJNBa0004L19.10 [Oryza sativa Japonica Group]
Length = 515
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 144 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTA 200
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 201 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFMSVPFVGRNQLGVERLRNPLL 254
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 255 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 313
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP + E++Q+ L E
Sbjct: 314 TVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 346
>gi|108708199|gb|ABF95994.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1534
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q+ R A G LCFNC F+PGH +C P +
Sbjct: 350 PPTPTVQPV-------QSRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 388
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 389 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 445
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 446 HSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAQYYSPAVPIEIQGIPFPSDLILLDTK 505
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 506 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 561
>gi|116317857|emb|CAH65888.1| OSIGBa0096I22.1 [Oryza sativa Indica Group]
Length = 1635
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 558 PPTPAVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 607
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 608 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 661
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 662 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 721
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 722 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 769
>gi|108708202|gb|ABF95997.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1764
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 580 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 621
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 622 GQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSF 678
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 679 ISVPFVGKSQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFSSDLILLDTKNLD 738
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 739 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 791
>gi|55168106|gb|AAV43974.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1568
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + K+ +P + + + A
Sbjct: 479 GVCFNCGD---PGHYADKCPKPRRV--------KNAPTPNNSNVPAP-KARVNHVAAAEA 526
Query: 328 QNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
QN + G + + T+L DS +TH FL+ S A +G V + + + G +
Sbjct: 527 QNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVF 586
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKG 443
S+ C V + + F LL D++LG +WL R G I K+T+ + G
Sbjct: 587 STQYCPSVTIEIEEVPFPSSLILLECKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NG 645
Query: 444 QTVQLTGYDSLPPALANHGEI-NQLLLQE 471
+TV + S P HG I NQ+ LQE
Sbjct: 646 ETVSF--FVSSP---KYHGVILNQVALQE 669
>gi|50300545|gb|AAT73686.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1498
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 314 PPTPAVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 352
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 353 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 409
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 410 HSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 469
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 470 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQISLSE 525
>gi|32487701|emb|CAE05378.1| OSJNBa0022F16.2 [Oryza sativa Japonica Group]
gi|38346701|emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa Japonica Group]
Length = 1494
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 598 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 647
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 648 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 701
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 702 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 761
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q++L E
Sbjct: 762 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIVLSE 809
>gi|52353726|gb|AAU44292.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1816
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 632 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPQPRRQQGQAPPRSNNGG 684
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 685 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 738
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 739 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 798
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 799 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 843
>gi|20177638|gb|AAM14693.1|AC097446_22 Putative polyprotein [Oryza sativa Japonica Group]
gi|110288622|gb|ABB46770.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1630
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A +P + + + A Q
Sbjct: 544 VCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNVPAP-KARVNHVAAAEAQ 591
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A +G V + + + G + S
Sbjct: 592 NAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFS 651
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C V + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 652 TQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NGE 710
Query: 445 TVQLTGYDSLPPALANHGEI-NQLLLQE 471
TV + S P +HG I NQ+ LQE
Sbjct: 711 TVSF--FVSSP---KSHGVILNQVALQE 733
>gi|326436543|gb|EGD82113.1| hypothetical protein PTSG_11921 [Salpingoeca sp. ATCC 50818]
Length = 515
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 114/311 (36%), Gaps = 66/311 (21%)
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSP 225
E F ++ +L GL I+ V + P++L+Q ++A + S S+S
Sbjct: 118 EVFLLAFYLIGLHPTIRQVVSVASPSTLVQAMKIAEDADRAKDASGTHFARHTSVS---- 173
Query: 226 PLLNSSPTITKTGGSSQ-PSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH 284
S + +K S Q P P LPP L+ E+ A+G CF C KPGH
Sbjct: 174 -----SNSTSKYQASKQAPRRDEGPRKRLPP---LTPEERQRLMAEGACFRC---RKPGH 222
Query: 285 ---RC-------KAPQLLLL---------------------------DADIEDKDE---- 303
+C AP L + D+D ED E
Sbjct: 223 GYAQCPGNGPLHSAPLQLAMTRQPPPSLRKEQTSRRAGAARPGRRNGDSDGEDGQEYSAI 282
Query: 304 -----QAEALEELPETLEVSLKALTGATPQNT--MRLKGNLKKHGVTILIDSSSTHIFLN 356
A P T +S T +TP +R + + IL+DS T +
Sbjct: 283 TLTVRNAPTTRSQPPTNYLSA-VTTASTPAYVPQLRFRATINGAPCNILLDSGCTTDVVA 341
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
A + + QVT DG +S S + +N QG DF ++P+ G D V
Sbjct: 342 EEFALKNLRVIQVHQDTQVTYGDGSHVSRSSMTT-ATLNVQGLTTTRDFLVIPIGGVDAV 400
Query: 417 LGAEWLRSLGA 427
LG +L+ A
Sbjct: 401 LGRPFLKDYAA 411
>gi|19881755|gb|AAM01156.1|AC113336_8 Putative retroelement [Oryza sativa Japonica Group]
gi|31430462|gb|AAP52371.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 600 PPTPAVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 649
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 650 NGGKDVIRGRVNHVAAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 703
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 704 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 763
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 764 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 811
>gi|14626279|gb|AAK71547.1|AC087852_7 hypothetical protein [Oryza sativa Japonica Group]
gi|108711057|gb|ABF98852.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|215701155|dbj|BAG92579.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 281
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 34/229 (14%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR ++DF G+ +P + + CE Y +++ + + +A +L+ A WY ++
Sbjct: 58 PRFQKMDFPRYDGKSDPLTFLNWCESYFHQQRIMDEEKVWMASYNLEDGAQLWYMQVQAD 117
Query: 134 MGNMTWAQFKRALVTQFG-------TFEDGDAVGTQN-----------------LPESFF 169
G +W +F+ LV ++G FE D T L ++
Sbjct: 118 EGKPSWRRFRELLVLRYGPPLRSAPLFELADCRRTTTVEDYQDHFQALLPRAGRLTKAQR 177
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE--EYAAVSNRRIPPRPSMSRPSPPL 227
+ F GL + + VQM P SL+ LAR E E + + P + P+
Sbjct: 178 VQLFTGGLLPPLSLKVQMQNPQSLVTAMSLARQFELMEQCTATLAKAPGHGIL--PTLGP 235
Query: 228 LNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNC 276
+ P +S P L+ P +RLS AEQ ERR GLCFNC
Sbjct: 236 RQAPPQPPAPRAASPPVLIDGRP-----VKRLSQAEQDERRRLGLCFNC 279
>gi|90265089|emb|CAH67761.1| H0124E07.8 [Oryza sativa Indica Group]
Length = 1427
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P K
Sbjct: 380 PPTPAVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------K 418
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 419 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 475
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 476 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 535
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 536 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 591
>gi|78708033|gb|ABB47008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 620 PPTPAVQPI-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 669
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 670 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 723
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 724 VGKSQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 783
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 784 NWLAQFQGVV-DCARRTITL-YRGPEQPVIFF--APPTSVRSSELHQIGLSE 831
>gi|78708062|gb|ABB47037.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1347
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 315 LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
L +SL A TG + M + +L + LIDS H FL+ A + G
Sbjct: 246 LRISLHAATGVRASDAMHITAHLGDTDLYTLIDSGLMHTFLSQDTAARVGRAPQPRMGLN 305
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
VTVA+G ++ G +P+ G +F D ++L + G D+ DF+
Sbjct: 306 VTVANGDKVACPGVFPDMPLQIAGEEFATDVYVLTLGGYDL---------------DFTV 350
Query: 435 LTMQFTWKGQTVQ 447
LTM F W T+
Sbjct: 351 LTMSF-WHRVTLH 362
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR+ +LDF G +P + RCEQ+ R E + + LA HL A WY LE+
Sbjct: 106 PRYHKLDFPKFDGRGDPLPFLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLERD 165
Query: 134 MGNMTWAQFKRALVTQFG 151
+W +F L ++G
Sbjct: 166 HEPPSWHRFSELLNMRYG 183
>gi|38344634|emb|CAE05067.2| OSJNBa0094P09.6 [Oryza sativa Japonica Group]
Length = 1803
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 619 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 660
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 661 GQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSF 717
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 718 ISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 777
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 778 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 830
>gi|359496850|ref|XP_003635354.1| PREDICTED: uncharacterized protein LOC100854728 [Vitis vinifera]
Length = 2807
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R ++++ +G +P +FR E++ E L + H++G A WY W++
Sbjct: 256 RFMKMEIPKFNGTDPHGWVFRVEEFFDFHGTPEPLRLRIVSFHMEGPAAGWYQWMKANNL 315
Query: 136 NMTWAQFKRALVTQFGT--FEDGDAVGTQ----------------------NLPESFFIS 171
+W F +L +FG +ED ++ + E IS
Sbjct: 316 LSSWKAFLLSLKHRFGASLYEDHQGNLSKLTQTSTVAEFQSAFEDLMNKVTGISEPLLIS 375
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
F++GL+ DI+ + +P++L++ F LAR E
Sbjct: 376 FFITGLKSDIRRELLFSRPSTLMEAFALARAYE 408
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 405 FFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
F+LP+ G D+VLG +WL+ LG + D++ L+M+F W+G+ + L G
Sbjct: 412 LFILPIEGPDVVLGIQWLQQLGRVAHDYAALSMEFCWEGRPIILHG 457
>gi|357459751|ref|XP_003600156.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355489204|gb|AES70407.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 651
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 143/360 (39%), Gaps = 62/360 (17%)
Query: 130 LEQTMGNMTWAQFKRALVT-------------QFGTFEDGD------AVGTQNLPESF-- 168
LEQ +TWA F+R + +F + GD A L + +
Sbjct: 191 LEQDGAVVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAKFYPH 250
Query: 169 -------FISC--FLSGLREDIK--IGVQMLKPASLLQTFELARFQEE-----YAAVSNR 212
F C F +GLR DIK IG Q ++ S L + R EE Y +S R
Sbjct: 251 YTAETAEFSKCIKFDNGLRADIKRAIGYQQIRIFSDLVS--RCRIYEEDTKAHYKVMSER 308
Query: 213 RIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFR------RLSVAEQTE 266
R + S P P + + +P+ P + F+ + +V + E
Sbjct: 309 R--GKGQQSHPKPYSAPADKGKQRLNDERRPNRRDAPAE-IVCFKCGEKGHKSNVCTKDE 365
Query: 267 RRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLK--ALTG 324
++ CF C ++ CK ++ + + E+ + + P+ + K ALTG
Sbjct: 366 KK----CFRCGQKGHVLADCKRGDVVCYNCN-EEGHISTQCTQ--PKKVRTGGKVFALTG 418
Query: 325 ATPQNTMRL-KGN--LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ-FQVTVADG 380
N RL +G + +ID+ +TH F+ A + G V+ + V
Sbjct: 419 TQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALESAYKLGLIVSDMKEEMVVETPAK 478
Query: 381 GVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
G +++S C P++ G F +D LP++G D++ G WL + FSK T+ F+
Sbjct: 479 GSVTTSLVCLRCPISMFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFSK-TVHFS 537
>gi|116317844|emb|CAH65877.1| OSIGBa0160I04.3 [Oryza sativa Indica Group]
Length = 1786
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 602 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 640
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 641 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 697
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 698 HSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 757
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 758 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIALSE 813
>gi|21671935|gb|AAM74297.1|AC083944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 974
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 42/266 (15%)
Query: 219 SMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCF 274
S++RP N++ T G+ +++ P V Q R+ +G +CF
Sbjct: 272 SVARPQRQFYNNN---TSNRGNDNRNMVACPAA-------TPVQNQPVRKEQGSKPVICF 321
Query: 275 NCDEQFKPGH---RCKAPQLLLLDADIEDKDE----QAEALEELPETLEVSLKALTGATP 327
NC + PGH +C P+ + +A + + +A + + + G P
Sbjct: 322 NCGD---PGHYADKCPKPRRVK-NAPVPNNPNVPAPKARVNHVAAAEAQNAPDVVLGTFP 377
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH FL+ S A ++G V + + + G + S+
Sbjct: 378 VNSI---------PATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQ 428
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTV 446
C V + + F LL D++LG +WL R G I K+T+ + G+TV
Sbjct: 429 YCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS-NGETV 487
Query: 447 QLTGYDSLPPALANHGEI-NQLLLQE 471
+ S P +HG + NQ+ LQE
Sbjct: 488 SF--FASSP---KSHGVVLNQVALQE 508
>gi|13992680|gb|AAK51574.1|AC022352_10 Putative retroelement [Oryza sativa Japonica Group]
gi|31431004|gb|AAP52842.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1810
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 626 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 678
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 679 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 732
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 733 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 792
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 793 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 837
>gi|218196361|gb|EEC78788.1| hypothetical protein OsI_19034 [Oryza sativa Indica Group]
Length = 557
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 63/257 (24%)
Query: 80 LDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW 139
+DF G+ P S I + ++Y L E D + LA H+ G A W +++W
Sbjct: 272 VDFPTFEGDYPESWIRKAKKYFSLYQTPEEDKVLLAEVHISGRADQWIESSAIATASLSW 331
Query: 140 AQFKRALVTQFGT-------------------------FEDGDAVGTQNLPE---SFFIS 171
+FK + +F FE+ A+ ++ P +F+
Sbjct: 332 PEFKTMVCQRFAAKSKIEITETFRNLKQYGSVDSYIDKFEETMALVKRSNPTLTGDYFLD 391
Query: 172 CFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSS 231
F+SGL++ IK ++ L SL+ +E A N + PR + + +S
Sbjct: 392 YFISGLKDHIKRPLKSLSIYSLVTAYEHA---------CNYDVIPRSANT-------SSV 435
Query: 232 PTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQ---TERRAKGLCFNCDEQFKPGH--RC 286
P+ KT P +PP + + +Q T + G F C+E + PG C
Sbjct: 436 PSNRKT-------------PKIPPKQPIRDNKQSAVTHTKFSGKYFRCNEPWVPGQGRVC 482
Query: 287 KAPQLLLLDADIEDKDE 303
KA + + L +ED+ E
Sbjct: 483 KATKQVYL-VTMEDESE 498
>gi|108864644|gb|ABA95339.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1348
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 110/261 (42%), Gaps = 46/261 (17%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTW----- 139
+G+NP CE Y + + ++ + +A + G+A W + + +TW
Sbjct: 140 FNGDNPQMWRANCEVYFDVYGIPPSNWVKIATLNFVGNAAFWLQSVRNQLIGVTWYDLCE 199
Query: 140 ---AQFKR----ALVTQF----------GTFEDGDAVGTQ------NLPESFFISCFLSG 176
A+F R AL+ Q+ E D++ Q + P +F++ F+ G
Sbjct: 200 RVCARFTRDRQQALIRQWLRVQQTTSVAEYVEKFDSIMHQLNAYENSAPIEYFVTKFIDG 259
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITK 236
L+E+++ + + +P L LA QEE A+ + + S + N ++ +
Sbjct: 260 LKEEVRSVILVQRPQDLDTACSLAMLQEE--ALEGL----KAGSYKKSEQMGNYIKSVPR 313
Query: 237 TGGSSQPSLLGPPPPGLPPFRRLSVAEQTE---------RRAKGLCFNCDEQFKPGHRC- 286
+ +SQ +L P P + L E R++KGLCF C E++ H+C
Sbjct: 314 S--ASQTTLFSPSPQKVNSSAALEATRAKEDKVASLKAYRKSKGLCFICGERWGRDHKCA 371
Query: 287 KAPQLLLLDADIEDKDEQAEA 307
A QL ++ +E + EA
Sbjct: 372 NAVQLHVVQELMEAMNIDNEA 392
>gi|108708179|gb|ABF95974.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1643
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 30/224 (13%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
SV Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 555 SVQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNVPAPNNSNVP 603
Query: 313 ETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 604 AP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVS 662
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 663 LGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVI 722
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+ V + S P +HG + NQ+ LQE
Sbjct: 723 DCANRKVTVTNS-NGEIVSF--FASSP---KSHGVVLNQVTLQE 760
>gi|108862403|gb|ABA97246.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1225
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 38/272 (13%)
Query: 212 RRIPPRPSMSRPSPPLLNSSPTITKTG-GSSQPSLLGPPPPGLPPFRRLSVAEQTERRAK 270
R IP R ++ S + + P +T++ G+ P PP P + P + + +R
Sbjct: 48 RLIPGRCFHAQISSEITSEFPGVTQSQQGTRAPH---PPTPAVQPGQGRRDVQCQQR--- 101
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET--LEVSLKALTGA 325
LCFNC F+PGH +C P + +Q +A P +V +
Sbjct: 102 -LCFNC---FEPGHFADKCPKP-----------RRQQGQAPPR-PNNGGKDVIRGRVNHV 145
Query: 326 TPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
T ++ + + G H + TIL+DS ++H F++ + V +
Sbjct: 146 TAEDVLTTPDVIVGTFLIHSIPATILLDSGASHSFISVPFMGRNQLGVERLRNPLLITTP 205
Query: 380 GGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
GGV+++ VP+ QG F D LL D++LG WL ++ D ++ T+
Sbjct: 206 GGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL 264
Query: 440 TWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++G + + PP E++Q+ L E
Sbjct: 265 -YRGPEQPVVFF--APPTSVGSSELHQIGLSE 293
>gi|116309194|emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa Indica Group]
Length = 1433
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 32/225 (14%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE----QAEAL 308
SV Q R+ +G +CFNC + PGH +C P+ + +A + + +A
Sbjct: 303 SVQNQPVRKDQGSKPVICFNCGD---PGHYADKCPKPRRVK-NAPVPNNSNVPAPKARVN 358
Query: 309 EELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVT 368
+ + + G P N++ T+L DS +TH FL+ S A ++G V
Sbjct: 359 HVAAAEAQNAPDVVLGTFPVNSI---------PATVLFDSGATHSFLSKSFASKHGMEVV 409
Query: 369 TTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGA 427
+ + + + G S+ C V + + F LL D++LG +WL R G
Sbjct: 410 SLGRPLLVNSPGNQAFSTQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGV 469
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
I K+T+ + G+TV + S P +HG + NQ+ LQE
Sbjct: 470 IDCANRKVTLTNS-NGETVSF--FASSP---KSHGVVLNQVALQE 508
>gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza sativa Japonica Group]
Length = 963
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ A P
Sbjct: 468 VQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSSAPA 516
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A +G V +
Sbjct: 517 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGIEVISL 575
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 576 GRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVID 635
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P +HG + NQ+ LQE
Sbjct: 636 CANRKVTLTNS-NGETVSF--FASSP---KSHGVVLNQVALQE 672
>gi|116309001|emb|CAH66120.1| OSIGBa0146N20.5 [Oryza sativa Indica Group]
Length = 1481
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ +P
Sbjct: 304 VQNQPVRKDQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNAPTSNNSNVPA 352
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 353 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSL 411
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 412 GRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVID 471
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ + G+TV P + +NQ+ LQE
Sbjct: 472 CANRKVTLTNS-NGETVSFFASSPKSPGVV----LNQVALQE 508
>gi|116308973|emb|CAH66097.1| OSIGBa0114I04.4 [Oryza sativa Indica Group]
Length = 1455
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 40/265 (15%)
Query: 219 SMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCF 274
S+ RP N++ T G+ +++ P SV Q R+ +G +CF
Sbjct: 274 SVVRPQRQFYNNN---TSNRGNDNRNVVARPAA-------TSVQNQPVRKEQGSKPVICF 323
Query: 275 NCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTM 331
NC + PGH +C P+ + K+ A +P + + + A QN
Sbjct: 324 NCGD---PGHYADKCPKPRCV--------KNVPAPNNSNVPAP-KARVNHVAAAEAQNAP 371
Query: 332 RLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
+ G + + T+L DS +TH F++ S A +G V + + + G + S+
Sbjct: 372 DVVLGTFPVNSIPATVLFDSGATHSFMSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQY 431
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQ 447
C + + F LL D++LG +WL R G I K+T+ + G+TV
Sbjct: 432 CPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NGETVS 490
Query: 448 LTGYDSLPPALANHGEI-NQLLLQE 471
+ S P + HG I NQ+ LQE
Sbjct: 491 F--FVSSPKS---HGVILNQVALQE 510
>gi|55168118|gb|AAV43985.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55168194|gb|AAV44060.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1772
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 595 PPTPAVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 633
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 634 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDMLTSPDVIVGTFLVHSIPATILFDSGAS 690
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 691 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 750
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 751 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 806
>gi|38346425|emb|CAD40212.2| OSJNBa0019J05.10 [Oryza sativa Japonica Group]
Length = 1525
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 25/180 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC+ KPGH +C P+ K QA E + + + + G P
Sbjct: 358 LCFNCN---KPGHTVGKCPKPR------HAGPKFVQARVNHASAEEAQSAPEVILGTFPV 408
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N+ IL DS +TH ++ A +G + GG ++++
Sbjct: 409 NST---------PAVILFDSGATHSLISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY 459
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
C V V QG F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 460 CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI--DCASRTIKLTNAKGEVV 517
>gi|57863932|gb|AAS90688.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 40/238 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 605 PPTPTVQP-------GQGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 643
Query: 302 DEQAEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHI 353
+Q +A P +VS + T ++ + + G H + TIL DS ++H
Sbjct: 644 RQQGQAPPR-PNNGGKDVSRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHS 702
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 703 FISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNL 762
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 763 DVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 816
>gi|77555686|gb|ABA98482.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 619 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGG 671
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 672 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 725
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 726 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 785
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 786 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 830
>gi|38344635|emb|CAE05068.2| OSJNBa0094P09.7 [Oryza sativa Japonica Group]
Length = 1804
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 620 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 661
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 662 GQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSF 718
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 719 ISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGILFPSDLILLDTKNLD 778
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 779 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 831
>gi|110288765|gb|ABG65969.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1502
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 318 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 356
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 357 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 413
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V +T GGV+++ VP+ QG F D LL
Sbjct: 414 HSFISVPFVGRNQLGVERLRNPLLTTTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 473
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 474 NLDVILGMNWLAQFQGVV-DCARRTVTL-YQGPEQPVVFF--APPTSIRSSELHQIGLSE 529
>gi|218199463|gb|EEC81890.1| hypothetical protein OsI_25707 [Oryza sativa Indica Group]
Length = 839
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDF 432
+ VA+G + S G C ++ +N F +D F L + DI+LG +WL++LG ILWDF
Sbjct: 627 LRFVVANGDRLVSPGLCRNLTLNIDDEAFSVDCFALDLCAVDIILGMQWLQTLGPILWDF 686
Query: 433 SKLTM 437
+ M
Sbjct: 687 KNMRM 691
>gi|38344636|emb|CAE05069.2| OSJNBa0094P09.8 [Oryza sativa Japonica Group]
Length = 954
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P+ A +
Sbjct: 604 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQGQAPPRPNNGG 656
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 657 KDVIRGRVNHV-TAEDVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGK 710
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 711 NQLGVERLRNPLLITTPGGVMTAEYYSPAVPIEIQGIPFPSDLILLNTKNLDVILGMNWL 770
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 771 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 815
>gi|449475602|ref|XP_004154499.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101229506 [Cucumis sativus]
Length = 1079
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 16 QFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGR-------- 67
Q+ E++E+ ++ +L+E+ILS+H E+ + + + G
Sbjct: 5 QWEERLEMSEKEIWELKEMILSMHKSIENLTEEVKESSRSKHREESCASEGSGLKKKGKE 64
Query: 68 ---------IGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGH 118
GG+ + ++ +L+ +++G+N S ++R E Y + L + + +A+
Sbjct: 65 GETDMNSVFTGGSSDRSKYKKLEMPIITGDNSESWVYRAEHYFDINELANEEKVKVAVIS 124
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDG 156
D V W+ W +W KR + F T G
Sbjct: 125 FGQDEVNWFRWSNNRKTVTSWEDLKRRMFEHFKTLGGG 162
>gi|110288697|gb|ABB46940.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1244
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 42/266 (15%)
Query: 219 SMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCF 274
S++RP N++ T G+ +++ P V Q R+ +G +CF
Sbjct: 555 SVARPQRQFYNNN---TSNRGNDNRNMVACPAA-------TPVQNQPVRKEQGSKPVICF 604
Query: 275 NCDEQFKPGH---RCKAPQLLLLDADIEDKDE----QAEALEELPETLEVSLKALTGATP 327
NC + PGH +C P+ + +A + + +A + + + G P
Sbjct: 605 NCGD---PGHYADKCPKPRRVK-NAPVPNNPNVPAPKARVNHVAAAEAQNAPDVVLGTFP 660
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH FL+ S A ++G V + + + G + S+
Sbjct: 661 VNSI---------PATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQ 711
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTV 446
C V + + F LL D++LG +WL R G I K+T+ + G+TV
Sbjct: 712 YCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS-NGETV 770
Query: 447 QLTGYDSLPPALANHGEI-NQLLLQE 471
+ S P +HG + NQ+ LQE
Sbjct: 771 SF--FASSP---KSHGVVLNQVALQE 791
>gi|41469587|gb|AAS07330.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710255|gb|ABF98050.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1294
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 24/231 (10%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAE 306
P P P +L+ EQ + G+CFNC E +C P+ + + E + A
Sbjct: 247 APRPVATPAQHQLAKREQGNKL--GVCFNCGEPCHYFDKCPKPRRVKVVP--EQNNSTAS 302
Query: 307 ALEELPETLEVSL-----KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK 361
A + + + + G P N++ T+L DS +TH FL+ S A
Sbjct: 303 ATKARVNHVAAAEAQGAPDVILGTFPVNSV---------PATVLFDSGATHSFLSMSFAG 353
Query: 362 QYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEW 421
+G V + + SS + V + QG F + LL D++LG +W
Sbjct: 354 NHGMEVEDLRRPLMVSTPSNQALSSQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDW 413
Query: 422 L-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
L R G I K+T+ GQ V + S P +NQ+ L+E
Sbjct: 414 LARYKGVIDCANRKVTLTSN-DGQVVTVHALTSEPL----RSSLNQITLEE 459
>gi|38347567|emb|CAE05000.2| OSJNBb0093G06.8 [Oryza sativa Japonica Group]
Length = 1770
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 586 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------R 624
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 625 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 681
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 682 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFSSDLILLDTK 741
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 742 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 797
>gi|116311097|emb|CAH68025.1| OSIGBa0136O08-OSIGBa0153H12.3 [Oryza sativa Indica Group]
Length = 1826
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 642 PPTPAVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 691
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 692 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 745
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 746 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 805
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 806 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 853
>gi|22857586|gb|AAN09860.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 636 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 674
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 675 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 731
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V +T GGV+++ VP+ QG F D LL
Sbjct: 732 HSFISVPFVGRNQLGVERLRNPLLTTTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 791
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 792 NLDVILGMNWLAQFQGVV-DCARRTVTL-YQGPEQPVVFF--APPTSIRSSELHQIGLSE 847
>gi|50300512|gb|AAT73655.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1747
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 586 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 624
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 625 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 681
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 682 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 741
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 742 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 797
>gi|116308880|emb|CAH66015.1| OSIGBa0093M15.5 [Oryza sativa Indica Group]
Length = 986
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ +P
Sbjct: 304 VPNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNAPVPNNPNIPA 352
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A ++G V +
Sbjct: 353 P-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSL 411
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 412 GRPLLVNTPGNQVFSTRYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVID 471
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHG-EINQLLLQE 471
K+T+ + G+TV + S P +HG +NQ+ LQE
Sbjct: 472 CANRKVTLTNS-NGETVSF--FASSP---KSHGVTLNQVALQE 508
>gi|18378609|gb|AAL68642.1|AF458766_1 polyprotein [Oryza sativa Japonica Group]
Length = 677
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%)
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG 380
A G ++ R+KG ++ + +LIDS S+H FL+ ++ + + +V VA G
Sbjct: 23 ACNGTDSTHSFRVKGLIQGTKLLMLIDSGSSHSFLDENIVQTMQGVTSLPQPVKVKVASG 82
Query: 381 GVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
V+ + QG + +F LL + G D +LG +WL+ LG + + + +++
Sbjct: 83 EVLICDKQLPDYAWWLQGRCYRTNFKLLSLPGYDAILGIDWLQGLGVMRIIWVQKWLEYE 142
Query: 441 WKGQTVQLTG 450
G V++ G
Sbjct: 143 INGSPVRIQG 152
>gi|20451036|gb|AAM22007.1|AC093178_2 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430824|gb|AAP52683.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1229
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 638 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 687
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 688 NGAKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFVSVPF 741
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 742 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 801
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 802 NWLAQFQVVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 849
>gi|62733085|gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549495|gb|ABA92292.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 611 PPTPTVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 649
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 650 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 706
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 707 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 766
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 767 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 822
>gi|21672037|gb|AAM74399.1|AC119149_14 Putative retroelement [Oryza sativa Japonica Group]
gi|31431043|gb|AAP52881.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 637 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 675
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 676 RQQGQAP---PRSNNGGRDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 732
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 733 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPTVPIEIQGIPFPSDLILLDTK 792
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 793 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 848
>gi|78708125|gb|ABB47100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 637 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 675
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 676 RQQGQAP---PRSNNGGRDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 732
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 733 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 792
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 793 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 848
>gi|54287622|gb|AAV31366.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1826
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 665 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 703
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 704 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 760
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 761 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 820
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 821 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 876
>gi|38347259|emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group]
Length = 1785
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 601 PPTPTVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 650
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 651 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 704
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 705 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 764
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 765 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 812
>gi|13992691|gb|AAK51585.1|AC022352_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1862
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 678 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 716
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 717 RQQGQAP---PRSNNGGRDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 773
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 774 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 833
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 834 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 889
>gi|32492194|emb|CAE03534.1| OSJNBa0061C06.22 [Oryza sativa Japonica Group]
gi|39545591|emb|CAE02835.3| OSJNBa0014F04.1 [Oryza sativa Japonica Group]
Length = 1450
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 269 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTA 325
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 326 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 379
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D+++
Sbjct: 380 ITTLGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DYARC 438
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP + E++Q+ L E
Sbjct: 439 TVTL-YRGPEQPVVFF--APPTSVSSSELHQIELSE 471
>gi|51091547|dbj|BAD36284.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1620
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 18/209 (8%)
Query: 268 RAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTG 324
R K LCFNC F+PGH +C P+ A + + + + LT
Sbjct: 459 RDKRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAE-DVLT- 513
Query: 325 ATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV 382
TP + G H + TIL DS ++H F++ + V + GGV
Sbjct: 514 -TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV 569
Query: 383 ISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442
+++ VP+ QG F D LL D++LG WL ++ D ++ T+ ++
Sbjct: 570 MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-YR 627
Query: 443 GQTVQLTGYDSLPPALANHGEINQLLLQE 471
G + + PP E++Q+ L E
Sbjct: 628 GPEQPVVFF--APPTSVRSSELHQIGLSE 654
>gi|62732761|gb|AAX94880.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549451|gb|ABA92248.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 665 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 714
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 715 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 768
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 769 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 828
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 829 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 876
>gi|58532065|emb|CAE05987.3| OSJNBa0004L19.16 [Oryza sativa Japonica Group]
Length = 1731
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 581 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 630
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 631 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFMSVPF 684
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 685 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 744
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 745 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 792
>gi|50897320|gb|AAT85771.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108709111|gb|ABF96906.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1169
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 34/213 (15%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC FKPGH +C P + +Q +A P + + G
Sbjct: 19 LCFNC---FKPGHFADKCPKP-----------RRQQGQAH---PRSNNGGKDVIRGRVNH 61
Query: 329 NTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVA 378
T + G H + TIL DS ++H F++ + V +
Sbjct: 62 VTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITT 121
Query: 379 DGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
GGV+++ VP+ QG F D LL D++LG WL ++ D ++ T+
Sbjct: 122 PGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQCVV-DCARCTVT 180
Query: 439 FTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++G + + PP E++Q+ L E
Sbjct: 181 L-YRGTEQPVVFF--APPTSVGSSELHQIRLSE 210
>gi|38346850|emb|CAD39932.2| OSJNBa0091C12.10 [Oryza sativa Japonica Group]
Length = 1461
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 277 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------R 315
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 316 RQQGQAP---PRSNHGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 372
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 373 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 432
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 433 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 488
>gi|38347260|emb|CAE05307.2| OSJNBa0056L23.5 [Oryza sativa Japonica Group]
Length = 927
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 601 PPTPTVQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 650
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + + LT TP + G H + TIL DS ++H F++
Sbjct: 651 NGGKDVIRGRVNHV-TAEDVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 704
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 705 VGSNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 764
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 765 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 812
>gi|57834100|emb|CAE04765.3| OSJNBa0079C19.6 [Oryza sativa Japonica Group]
Length = 1998
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 576 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------R 614
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 615 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDIIVGTFLIHSIPATILFDSGAS 671
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 672 HSFISVPFMGRNQLGVERIRNPLLITTPGGVMTAKYNSPAVPIEIQGIPFPSDLILLDTK 731
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 732 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 787
>gi|32487330|emb|CAE05905.1| OSJNBa0061C08.12 [Oryza sativa Japonica Group]
Length = 1971
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 549 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------R 587
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 588 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDIIVGTFLIHSIPATILFDSGAS 644
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 645 HSFISVPFMGRNQLGVERIRNPLLITTPGGVMTAKYNSPAVPIEIQGIPFPSDLILLDTK 704
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 705 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 760
>gi|78708041|gb|ABB47016.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 665 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 714
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + V+ + L TP + G H + TIL DS ++H F++
Sbjct: 715 NGGKDVI--WGRVNHVTAEDLL-TTPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 768
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 769 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 828
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 829 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 876
>gi|77555003|gb|ABA97799.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1757
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 638 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 687
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + V+ + + TP + G H + TIL DS ++H F++
Sbjct: 688 NGGKDVIRG--RVNHVTAEGVL-TTPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 741
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP++ QG F D LL D++LG
Sbjct: 742 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPMDIQGIPFPSDLILLDTKNLDVILGM 801
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 802 NWLAQFQGVV-DCTRRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 849
>gi|22857594|gb|AAN09868.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1802
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 618 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 667
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 668 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 721
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 722 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 781
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 782 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 829
>gi|224149240|ref|XP_002336774.1| predicted protein [Populus trichocarpa]
gi|222836687|gb|EEE75080.1| predicted protein [Populus trichocarpa]
Length = 183
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGN-- 136
R++ GE+P + +C++Y R+ ++ + + +L+G A W+ GN
Sbjct: 43 RMELSTFRGEDPRGWLRKCKKYFRIHSIPVHQWVEMVSYYLEGKADVWFEGF--VRGNES 100
Query: 137 -MTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQ 195
+ W +F +++ +FG +D + E F + L EDI +++L+P +L+Q
Sbjct: 101 LIDWEEFSQSICRRFGNKKD--------VVEEF------NKLLEDINPMLKILRPTTLMQ 146
Query: 196 TFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
FE ++QEE ++R S+ P LL S
Sbjct: 147 AFEQTKWQEESNNAMDKR-----SLFSPRTALLGS 176
>gi|38344459|emb|CAE04930.2| OSJNBa0017P10.7 [Oryza sativa Japonica Group]
gi|38345444|emb|CAE03296.2| OSJNBb0046P18.12 [Oryza sativa Japonica Group]
Length = 1469
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 285 PPTPTMQP-------GQGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 323
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 324 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 380
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 381 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 440
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 441 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 496
>gi|255583707|ref|XP_002532607.1| conserved hypothetical protein [Ricinus communis]
gi|223527663|gb|EEF29773.1| conserved hypothetical protein [Ricinus communis]
Length = 140
Score = 55.1 bits (131), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 72 LVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLE 131
+ + R +L+F G++PT R EQY E+ + LA H +G+A W+ WL
Sbjct: 1 MFESRPAKLEFPKFQGDDPTVWHTRVEQYFDFQMTTESKKVPLASYHFEGEANEWWQWLN 60
Query: 132 QTMGN----MTWAQFKRALVTQFGTFED-GDAVGTQNLPESFFISCFLSGLREDIKIGVQ 186
+ N +TW L + FE G+ V + + F+ GL+ +I ++
Sbjct: 61 RAYKNEGKVVTWEALVEELWAR--QFEQLGNRV--HGWTQKALVGTFMGGLKLEIADAIR 116
Query: 187 MLKPASLLQTFELARFQEE 205
KP +L E AR +++
Sbjct: 117 FFKPKTLKDAIEYARMKDQ 135
>gi|48926660|gb|AAT47449.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1943
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 606 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQKGQAPPRSN 655
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 656 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 709
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 710 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 769
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 770 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 817
>gi|58532064|emb|CAD40396.3| OSJNBa0004L19.15 [Oryza sativa Japonica Group]
Length = 1821
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 637 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 686
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 687 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 740
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 741 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 800
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 801 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 848
>gi|110288767|gb|AAP52585.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1797
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 613 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 662
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 663 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 716
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 717 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 776
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 777 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 824
>gi|108864166|gb|ABA92236.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1636
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 44/238 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 638 PPTPAVQP-------GQGRRDAQGQQRLCFNC---FEPGHFTDKCPKP-----------R 676
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 677 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDIIVGTFLIHSIPATILFDSGAS 733
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + + V + GGV+++ VP+ QG F D LL
Sbjct: 734 HSFISVTFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 793
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLL 469
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L
Sbjct: 794 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGL 847
>gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza sativa Japonica Group]
Length = 1447
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 30/224 (13%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S Q RR +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 299 SAQNQPVRREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KNALAPNNSNVP 347
Query: 313 ETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A QN + G + + T+L DS +TH FL+ S A +G V +
Sbjct: 348 AP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVS 406
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + G + S+ C + + F LL D++LG +WL R G I
Sbjct: 407 LGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVI 466
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHG-EINQLLLQE 471
K+T+ + G+TV + +HG +NQ+ LQE
Sbjct: 467 DCANRKVTLTSS-NGETVSFFVFSP-----KSHGVNLNQVALQE 504
>gi|77549443|gb|ABA92240.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1319
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + K+ A +P + + + A
Sbjct: 318 GVCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNVPAP-KARVNHVAAAEA 365
Query: 328 QNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
QN + G + + T+L DS +TH FL+ S A +G V + + + G
Sbjct: 366 QNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAF 425
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKG 443
S+ C + + F LL D++LG +WL R G I K+T+ + G
Sbjct: 426 STQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS-NG 484
Query: 444 QTVQLTGYDSLPPALANHG-EINQLLLQE 471
+TV + S P + HG +NQ+ LQE
Sbjct: 485 KTVSF--FASSPKS---HGVNLNQVALQE 508
>gi|50878387|gb|AAT85162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1152
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 643 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 692
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 693 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHPIPATILFDSGASHSFISVPF 746
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 747 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 806
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 807 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 854
>gi|58532097|emb|CAD40058.3| OSJNBa0085C10.10 [Oryza sativa Japonica Group]
Length = 1785
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 601 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 650
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + ++ LT TP + G H + TIL DS ++H F++
Sbjct: 651 NGGKDVIRGRVNHV-MAEDVLT--TPDIIV---GTFLVHSIPATILFDSGASHSFISVPF 704
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 705 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 764
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 765 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 812
>gi|108708192|gb|ABF95987.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1273
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 26/231 (11%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC-KAPQLLLLDADIEDKDEQAE 306
PP P + P + A+ +R LCFNC F+PGH K P+ + + +
Sbjct: 602 PPAPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKPRRQQSQVPPRSNNGG 654
Query: 307 ALEELPETLEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLA 360
+V + T ++ + + G H + TIL DS ++H F++
Sbjct: 655 K--------DVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFV 706
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 707 GRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMN 766
Query: 421 WLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 767 WLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRRLELHQIGLSE 813
>gi|147792776|emb|CAN62233.1| hypothetical protein VITISV_010121 [Vitis vinifera]
Length = 1797
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 142/383 (37%), Gaps = 88/383 (22%)
Query: 94 IFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT------MGNMTWAQFKRAL- 146
I + E++ + E S A LD +A YHW T G +TW QF+ A
Sbjct: 577 ILKMEKFFGVIDCSEEQKASYAAFMLDKEA---YHWWRMTRRLLEDQGPITWRQFREAFY 633
Query: 147 ------------VTQFGTFEDGDAVGTQNLPESFFISCF---LSGLREDIKIGVQ-MLKP 190
V +F E GD + Q + +SCF L + E+ + Q LKP
Sbjct: 634 KKYFPDSVRWQKVGEFIRLEQGDMIVAQYEAKFTELSCFSPQLIAIEEEKALKFQDGLKP 693
Query: 191 --ASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGP 248
+ + +L + E L + PT K G
Sbjct: 694 YLKNKISILKLVVYSEN---------------------LDGACPTCGKKHG--------- 723
Query: 249 PPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIED--KDEQAE 306
G P +R + G CF C EQ C + + E+ KD+Q
Sbjct: 724 ---GRPCYREI-----------GACFCCGEQGHLIRDCPENRKFITGKPKEENKKDKQKP 769
Query: 307 ALEELPETLEVSLKALTGATPQNTMRL-KGNLKKHGV--TILIDSSSTHIFLNSSLAKQY 363
+ + A+T Q T + G L+ H + +LID STH F++ S A
Sbjct: 770 KAQGW-------VFAMTHRDAQATSDVVTGTLRIHTLFARVLIDLGSTHSFVSVSFAGLL 822
Query: 364 GCPVTTTTQFQVTVAD--GGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEW 421
G PV + F + VA G + +S + V + +D LL + D++LG +W
Sbjct: 823 GLPVASM-DFDLIVATPVGDSVVASRMLRNCIVMIGYREMPIDLVLLDLQDFDVILGMDW 881
Query: 422 LRSLGAILWDFSKLTMQFTWKGQ 444
L S A + F K + F+ GQ
Sbjct: 882 LASYHASVDCFEK-RVTFSIPGQ 903
>gi|54287528|gb|AAV31272.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287632|gb|AAV31376.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1784
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 600 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 638
Query: 302 DEQAEALEELPETLEVSLKALTG----ATPQNTMR----LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G AT ++ + + G H + TIL DS ++
Sbjct: 639 RQQGQAP---PRSNNGGKDVIRGRVNHATAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 695
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 696 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 755
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E +Q+ L E
Sbjct: 756 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSERHQIGLSE 811
>gi|116310099|emb|CAH67119.1| H0502G05.10 [Oryza sativa Indica Group]
Length = 1826
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 31/221 (14%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P + +Q +A ++
Sbjct: 651 QGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAPPRPNNGVKD 696
Query: 318 SLKA-LTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
++ + T ++ + + G H + TIL DS ++H F++ + V
Sbjct: 697 VIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERL 756
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILW 430
+ GGV+++ VP+ QG F D LL D++LG WL ++
Sbjct: 757 RNPLLITTPGGVMTAKYYIPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV- 815
Query: 431 DFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 816 DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 853
>gi|38347461|emb|CAD40088.2| OSJNBb0012A12.14 [Oryza sativa Japonica Group]
Length = 1075
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 354 PPTPTVQP-------GQGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 403
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + V+ + + TP + G H + TIL DS ++H F++
Sbjct: 404 NGGKDVIRG--RVNHVTAEDML-TTPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 457
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 458 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 517
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 518 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 565
>gi|32488663|emb|CAE03590.1| OSJNBa0087O24.13 [Oryza sativa Japonica Group]
Length = 1311
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 41/234 (17%)
Query: 53 QPLQINNQQPEP-----AGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALL 107
P + PEP A R A R +DF G+ P S I + E+Y L
Sbjct: 258 HPPHHHQYNPEPHHTNYAHRPHSADPAKRSRNVDFPTFEGDYPESWIRKAEKYFSLYQTP 317
Query: 108 ETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFG---------TFEDGDA 158
E D + LA H+ G A W +++W +FK + +F TF +
Sbjct: 318 EEDKVLLAEVHISGRADQWIESSAVPTASLSWPEFKTMVCQRFAAKSKIEITETFRNLKQ 377
Query: 159 VGTQN-------------------LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFEL 199
G+ + L E +F+ F+SGL+ IK ++ L SL+ +E
Sbjct: 378 YGSVDSYIDKFEETMALVKRSNPTLTEDYFLDYFISGLKGHIKRPLKSLSIYSLVTAYEH 437
Query: 200 ARFQE------EYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQ--PSL 245
AR + +++ + R P+ P+ S+ T TK G + PSL
Sbjct: 438 ARNYDVIPRSANTSSIPSNRETPKIPPKHPTKDDKQSTVTHTKFSGKCRGVPSL 491
>gi|38347631|emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa Japonica Group]
Length = 1699
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 643 PPTPAVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 681
Query: 302 DEQAEALEELPET-LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIF 354
+Q +A +V+ + T ++ + + G H V T L DS ++H F
Sbjct: 682 RQQGQAPPRSNNGGKDVTRGRVNHVTAEDVLTTPDVIVGTFLIHSVPATTLFDSGASHSF 741
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 742 ISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 801
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 802 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 854
>gi|52353559|gb|AAU44125.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 33/225 (14%)
Query: 261 VAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET 314
V Q R A+G LCFNC F+PGH +C P + +Q +A P
Sbjct: 296 VPGQGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAPPR-PNN 340
Query: 315 --LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCP 366
+V + T ++ + + G H + TIL DS ++H F++ +
Sbjct: 341 GGKDVVRGRVNHVTAEDVLTTPDVIVGTFPIHSIPATILFDSGASHSFISVPFVGRNQLG 400
Query: 367 VTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLG 426
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 401 VERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQ 460
Query: 427 AILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 461 GVV-DCARRTVTL-YRGPERPVVFF--APPTSVRSSELHQIELSE 501
>gi|50300539|gb|AAT73680.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1499
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 24/230 (10%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 315 PPTPAVQPV-------QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 364
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK 361
+ + + + T T ++ TIL DS ++H F++
Sbjct: 365 NGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVQSI----PATILFDSGASHSFISVPFVG 420
Query: 362 QYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEW 421
+ V + GGV+++ VP+ QG F D LL D++LG W
Sbjct: 421 RNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNW 480
Query: 422 LRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
L ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 481 LAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTAVRSSELHQIELSE 526
>gi|108862685|gb|ABA98546.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 642 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 691
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 692 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 745
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 746 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 805
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 806 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSIKSSELHQIGLSE 853
>gi|38567665|emb|CAE75948.1| B1159F04.11 [Oryza sativa Japonica Group]
Length = 1679
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 623 PPTPAVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 661
Query: 302 DEQAEALEELPET-LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIF 354
+Q +A +V+ + T ++ + + G H V T L DS ++H F
Sbjct: 662 RQQGQAPPRSNNGGKDVTRGRVNHVTAEDVLTTPDVIVGTFLIHSVPATTLFDSGASHSF 721
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 722 ISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 781
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 782 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 834
>gi|242117532|dbj|BAH80015.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1480
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 37/227 (16%)
Query: 261 VAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET 314
V Q R A+G LCFNC F+PGH +C P K +Q +A P +
Sbjct: 302 VPGQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------KRQQGQAP---PRS 344
Query: 315 LEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYG 364
+ G T + G H + TIL DS ++H F++ +
Sbjct: 345 NNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQ 404
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS 424
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 405 LGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQ 464
Query: 425 LGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 465 FQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 507
>gi|38346259|emb|CAE02081.2| OSJNBa0074B10.9 [Oryza sativa Japonica Group]
Length = 1659
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKD---EQAEALEELPETLEVSLKALTGA 325
+CFNC + PGH +C P+ + + + +A + + + + G
Sbjct: 513 ICFNCGD---PGHYADKCPKPRRVKNAPTPNNSNVPAPKARVNHVVAAEAQNAPDVVLGT 569
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
P N++ T+L DS +TH FL+ S A +G V + + + G + S
Sbjct: 570 FPVNSI---------PATVLFDSGATHSFLSKSFASNHGMEVVSLGRSLLVNTPGNQVFS 620
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 621 TQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTITSS-NGE 679
Query: 445 TVQLTGYDSLPPALANHG-EINQLLLQE 471
T+ Y +HG +NQ+ LQE
Sbjct: 680 TISFFVYSP-----KSHGVNLNQVALQE 702
>gi|21740445|emb|CAD41630.1| OSJNBa0091D06.6 [Oryza sativa Japonica Group]
Length = 1799
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 31/221 (14%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P + +Q +A ++
Sbjct: 624 QGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAPPRPNNGVKD 669
Query: 318 SLKA-LTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
++ + T ++ + + G H + TIL DS ++H F++ + V
Sbjct: 670 VIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERL 729
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILW 430
+ GGV+++ VP+ QG F D LL D++LG WL ++
Sbjct: 730 RNPLLITTPGGVMTAKYYIPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV- 788
Query: 431 DFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 789 DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 826
>gi|77555643|gb|ABA98439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 34/195 (17%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 605 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 646
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 647 GQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSF 703
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 704 ISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 763
Query: 415 IVLGAEWLRSLGAIL 429
++LG WL ++
Sbjct: 764 VILGMNWLAQFQGVV 778
>gi|20503033|gb|AAM22721.1|AC092388_5 putative polyprotein [Oryza sativa Japonica Group]
gi|31431879|gb|AAP53591.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 638 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 687
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 688 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 741
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 742 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDSKNLDVILGM 801
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 802 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 849
>gi|53981932|gb|AAV25050.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1804
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 620 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 669
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 670 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 723
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 724 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 783
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 784 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 831
>gi|38344419|emb|CAE02385.2| OSJNBb0080H08.11 [Oryza sativa Japonica Group]
Length = 1809
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 40/238 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGHRC-KAPQLLLLDADIEDKDE 303
PP P + P Q+ R A+G LCFNC F+PGH K P+L + +
Sbjct: 638 PPMPTVQP-------GQSRRDAQGPQRLCFNC---FEPGHFADKCPKL---------RRQ 678
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHI 353
Q +A P + + G T + G H + TIL DS ++H
Sbjct: 679 QGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHS 735
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 736 FISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKSL 795
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ + G + + PP + E++Q+ L E
Sbjct: 796 DVILGMNWLAQFQGVV-DCARRTVTL-YPGPEQPVVFF--APPTSVSSSELHQIGLSE 849
>gi|357448513|ref|XP_003594532.1| Zinc finger protein GIS2 [Medicago truncatula]
gi|355483580|gb|AES64783.1| Zinc finger protein GIS2 [Medicago truncatula]
Length = 499
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 25/167 (14%)
Query: 272 LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTM 331
+CFNC E+ G + K P+ +P T V AL G +N
Sbjct: 308 VCFNCKEEGHIGSQSKQPK-------------------RVPTTGRVF--ALAGTQTENED 346
Query: 332 RL-KGNLKKHGVTI--LIDSSSTHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSG 387
RL +G + + +ID+ +TH F+ A G ++ + V G +++S
Sbjct: 347 RLIRGTCYINNTLLVAIIDTGATHCFIAFDCASTLGLVMSDMNGEMVVETPAKGSVTTSL 406
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
C P++ G F +D LP+SG D++LG WL + FSK
Sbjct: 407 VCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINCFSK 453
>gi|77554995|gb|ABA97791.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1791
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+ A
Sbjct: 648 PPTPAVQP-------GQGRRDVQGPQCLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 697
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 698 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISMPF 751
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 752 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 811
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 812 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVGSSELHQIRLSE 859
>gi|77555016|gb|ABA97812.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1702
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A +P + + + A Q
Sbjct: 540 VCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNVP-VPKARVNHVVAAEAQ 587
Query: 329 NT-MRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A +G V + + + G + S
Sbjct: 588 NAPYVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFS 647
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 648 TQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCVNRKVTLTSS-NGE 706
Query: 445 TVQLTGYDSLPPALANHG-EINQLLLQE 471
TV + S P +HG +NQ+ LQE
Sbjct: 707 TVSF--FVSSP---KSHGVNLNQVALQE 729
>gi|77552428|gb|ABA95225.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 611 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 660
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 661 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 714
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 715 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 774
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 775 NWLAQFQGVV-DCARRTVTM-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 822
>gi|242117516|dbj|BAH79999.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1374
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 34/235 (14%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 322 PPTPTVQPVQGRKDAQGPQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 363
Query: 305 AEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLN 356
+A P +V + T ++ + + G H + TIL DS ++H F++
Sbjct: 364 GQAPPR-PNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFIS 422
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
+ V + GGV+++ VP+ QG F D L+ D++
Sbjct: 423 VPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILVDTKNLDVI 482
Query: 417 LGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 483 LGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 533
>gi|22725911|gb|AAN04921.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31430214|gb|AAP52160.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+PGH +C P + +Q
Sbjct: 602 PPTPVVQPVQGRRDAQGQQR----LCFNC---FEPGHFADKCPKP-----------RRQQ 643
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 644 GQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSF 700
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 701 ISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 760
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ D ++ T+ ++G + + PP +++Q+ L E
Sbjct: 761 VILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSKLHQIELSE 813
>gi|54287531|gb|AAV31275.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287635|gb|AAV31379.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1417
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 37/224 (16%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P + +Q +A P +
Sbjct: 97 QGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAP---PHSNNG 139
Query: 318 SLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPV 367
+ G T + G H + TIL DS ++H F++ + V
Sbjct: 140 GKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHWFISVPFVGRNQLGV 199
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
+ GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 200 ERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQG 259
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 260 VV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 299
>gi|38568037|emb|CAD40411.3| OSJNBa0065J03.7 [Oryza sativa Japonica Group]
Length = 1414
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%)
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+R+KG ++ + +LIDS S+H FL+ ++ + + +V VA G V+ +
Sbjct: 333 IRVKGLIQGTKLLMLIDSGSSHSFLDENIVQTMQGVTSLPQPVKVKVASGEVLICDKQLP 392
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
QG + +F LL + G D +LG +WL+ LG + + + +++ G V++ G
Sbjct: 393 DYAWWLQGRCYRTNFKLLSLPGYDAILGIDWLQGLGVMRIIWVQKWLEYEINGSPVRIQG 452
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
GENP CE Y + + + + +A+ + G A W + + ++W +
Sbjct: 165 FDGENPQMWRDNCEIYFEVYGVHPANWVKVALLNFTGSASFWLQSVRNELVGISWLELCD 224
Query: 145 ALVTQFGTF----EDGDAVGTQ------NLPESFFISCFLSGLREDIKIGVQMLKPASLL 194
+ Q G+ E D++ Q L +F++ F+ GL++DI+ V + +P +L
Sbjct: 225 RVCPQTGSVTEYVERFDSLMHQLLAYDNALTPRYFLTKFVDGLKDDIRGAVMLQRPEEIL 284
Query: 195 QTFELARFQEEYAAVSNRRIPPRPSMSRPSPP 226
+ +++ N+ SRP+ P
Sbjct: 285 EGSRKPSYRKSDGTNFNK------VFSRPTQP 310
>gi|108707255|gb|ABF95050.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1790
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 606 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 655
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 656 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSRASHSFISVPF 709
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 710 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 769
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 770 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 817
>gi|13992687|gb|AAK51581.1|AC022352_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 959
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R +G LCFNC F+PGH +C P+ A + + + +
Sbjct: 577 QVRRDVQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTA 633
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 634 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 687
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 688 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 746
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP + E++Q+ L E
Sbjct: 747 TVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 779
>gi|18425251|gb|AAL69429.1|AC098565_11 Putative polyprotein [Oryza sativa]
gi|31430202|gb|AAP52148.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1788
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 88/237 (37%), Gaps = 38/237 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQ 304
PP P + P Q R A+G LCFNC F+PGH +D + + +Q
Sbjct: 638 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGH--------FVDKCPKPRRQQ 679
Query: 305 AEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIF 354
+A P + + G T + G H + TIL DS ++H F
Sbjct: 680 GQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSF 736
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 737 ISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLD 796
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL ++ + + Q V PP E++Q+ L E
Sbjct: 797 VILGMNWLAQFQGVVDCAGRTVTLYRGPEQPVVFFA----PPTSVRSSEVHQIGLSE 849
>gi|90265240|emb|CAH67693.1| H0624F09.1 [Oryza sativa Indica Group]
gi|90399167|emb|CAJ86096.1| H0818H01.18 [Oryza sativa Indica Group]
Length = 1805
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 28/228 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 621 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 670
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + L + LT TP + G H + TIL DS ++H F++
Sbjct: 671 NSGKDVLRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 724
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 725 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 784
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQL 467
WL ++ D ++ T+ ++G + + PP E++Q+
Sbjct: 785 NWLAQFQGVV-DCTRRTVTL-YRGPEQPVVFF--APPTSVRSSELHQI 828
>gi|108708200|gb|ABF95995.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P + +Q +A P +
Sbjct: 629 QGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAP---PRSNNG 671
Query: 318 SLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPV 367
+ G T + G H + TIL DS ++H F++ + V
Sbjct: 672 GKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGKNQLGV 731
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
+ GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 732 ERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQG 791
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 792 VV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 831
>gi|50300503|gb|AAT73646.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1764
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 580 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 629
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 630 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 683
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 684 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 743
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 744 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 791
>gi|116308878|emb|CAH66013.1| OSIGBa0093M15.3 [Oryza sativa Indica Group]
Length = 1317
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A P + + + A Q
Sbjct: 319 ICFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNAPAP-KARVNHVAAAEAQ 366
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A +G V + + + G + S
Sbjct: 367 NAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFS 426
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 427 TQYCPSATIEIEEVLFPSSLILLESKDLDVILGIDWLSRHRGVIDCANRKVTLTNS-NGE 485
Query: 445 TVQLTGYDSLPPALANHGEINQLLLQE 471
TV + S P ++ G +NQ+ LQE
Sbjct: 486 TVSF--FASSPK--SHGGVLNQVALQE 508
>gi|110288855|gb|ABB47096.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 987
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R +G LCFNC F+PGH +C P+ A + + + +
Sbjct: 595 QVRRDVQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTA 651
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 652 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 705
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 706 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 764
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP + E++Q+ L E
Sbjct: 765 TVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 797
>gi|78708466|gb|ABB47441.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1802
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 89/240 (37%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 652 PPTPTVQP-------GQGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 690
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 691 HQQGQAP---PCSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 747
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + + + GGV+++ VP+ QG F D LL
Sbjct: 748 HSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 807
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ + + GQ V PP + E++Q+ L E
Sbjct: 808 NLDVILGMNWLAQFQGVVDCARRTVTLYRGPGQPVVFFA----PPTSVSSSELHQIGLSE 863
>gi|77549436|gb|ABA92233.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1483
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 26/209 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE---QAEALEELPETLEVSLKALTG 324
G+CFNC + PGH +C P+ + + + +A + + + G
Sbjct: 320 GVCFNCGD---PGHYADKCPKPRRVKNAPAPNNSNAPAPKARVNHVAAAEAQSAPDVILG 376
Query: 325 ATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
P N++ T+L DS +TH FL+ S A +G V + + + G +
Sbjct: 377 TFPVNSI---------PATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTLGNQVF 427
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKG 443
S+ C + + F LL D++LG +WL R G I K+T+ + G
Sbjct: 428 STQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCASRKVTLTNS-IG 486
Query: 444 QTVQLTGYDSLPPALANHGEI-NQLLLQE 471
+TV L + +HG I NQ+ LQE
Sbjct: 487 ETVSF-----LASSPKSHGVILNQVALQE 510
>gi|108708196|gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1748
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 564 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 613
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 614 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 667
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 668 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 727
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 728 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLAE 775
>gi|20043037|gb|AAM08845.1|AC113337_9 Putative retroelement [Oryza sativa Japonica Group]
Length = 1728
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 630 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTA 686
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 687 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 740
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 741 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 799
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP + E++Q+ L E
Sbjct: 800 TVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 832
>gi|50897341|gb|AAT85792.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein
[Oryza sativa Japonica Group]
gi|108709088|gb|ABF96883.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1708
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 602 PPTPAVQP-------SQGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 651
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G + + TIL DS ++H F++
Sbjct: 652 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIYSIPATILFDSGASHSFISVPF 705
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 706 VGRIQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 765
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 766 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 813
>gi|110288682|gb|AAP52358.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1707
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 609 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTA 665
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 666 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 719
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 720 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 778
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP + E++Q+ L E
Sbjct: 779 TVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 811
>gi|13129464|gb|AAK13122.1|AC080019_14 Polyprotein [Oryza sativa Japonica Group]
Length = 2017
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 89/240 (37%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P +
Sbjct: 892 PPTPTVQP-------GQGRRDASGPQRLCFNC---FEPGHFADKCPKP-----------R 930
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 931 HQQGQAP---PCSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 987
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + + + GGV+++ VP+ QG F D LL
Sbjct: 988 HSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 1047
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ + + GQ V PP + E++Q+ L E
Sbjct: 1048 NLDVILGMNWLAQFQGVVDCARRTVTLYRGPGQPVVFFA----PPTSVSSSELHQIGLSE 1103
>gi|50300513|gb|AAT73656.1| unknown protein, similar to polyprotein [Oryza sativa Japonica
Group]
Length = 917
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+ A
Sbjct: 550 PPTPAVQP-------SQGRRDVQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPHSN 599
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F+
Sbjct: 600 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFIYVPF 653
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 654 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIEIQGIPFPSDLILLDTKNLDVILGM 713
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 714 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVGSSELHQIGLSE 761
>gi|55168124|gb|AAV43991.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1499
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+ A
Sbjct: 336 PPTPAVQP-------GQGRRDVQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 385
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 386 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 439
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 440 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 499
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 500 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 547
>gi|32489198|emb|CAE04383.1| OSJNBa0027G07.25 [Oryza sativa Japonica Group]
gi|38347092|emb|CAE02564.2| OSJNBa0006M15.7 [Oryza sativa Japonica Group]
Length = 1807
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 642 PPTPTVQP-------GQGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 691
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + ++ + LT TP + G H + TIL DS ++H F++
Sbjct: 692 NGGKDVIQGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 745
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + G V+++ VP+ QG F D LL D++LG
Sbjct: 746 VGRNQLGVERLRNPLLITTPGEVMTAKYYSPAVPIEIQGIPFPSDLILLDTRNLDVILGM 805
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP N E++Q+ L E
Sbjct: 806 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVNRSELHQIGLSE 853
>gi|77554997|gb|ABA97793.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1435
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P + +Q +A P +
Sbjct: 331 QGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAP---PRSNNG 373
Query: 318 SLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPV 367
+ G T + G H + TIL DS ++H F++ + V
Sbjct: 374 GKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGV 433
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
+ GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 434 ERLRNPLLITTPGGVMTTKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQG 493
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 494 VV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 533
>gi|108708189|gb|ABF95984.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P + +Q +A P +
Sbjct: 629 QGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAP---PRSNNG 671
Query: 318 SLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPV 367
+ G T + G H + TIL DS ++H F++ + V
Sbjct: 672 GKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGV 731
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
+ GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 732 ERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQG 791
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 792 VV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 831
>gi|78708035|gb|ABB47010.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1796
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+P H +C P+ A +
Sbjct: 612 PPTPAVQPVQGRRDAQGQQR----LCFNC---FEPRHFADKCPKPRRQQGQAPPRSNNGG 664
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 665 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 718
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 719 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 778
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 779 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 823
>gi|147775006|emb|CAN70472.1| hypothetical protein VITISV_013479 [Vitis vinifera]
Length = 143
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT----- 133
+L+F SG +PT + +Q+ + +SLA HL+G A W+ WL ++
Sbjct: 14 KLEFPRYSGNDPTEWFNKVDQFFEYQGIPVAQKVSLASFHLEGXANQWWQWLRRSYSEKR 73
Query: 134 ---MGNMTWAQFKRALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
MG++ R +F G+ V Q + + F+ GL+ +I ++M KP
Sbjct: 74 KEXMGSL------RDYQREFXKL--GNRV--QGWTQKALVGTFMGGLKSEIADDIRMFKP 123
Query: 191 ASLLQTFELARFQEE 205
SL + LAR +++
Sbjct: 124 KSLKEAISLARMRDD 138
>gi|77554650|gb|ABA97446.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1847
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 663 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------R 701
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 702 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 758
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 759 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 818
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + S P E++Q+ L E
Sbjct: 819 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFFAS--PTSVRSSELHQIGLSE 874
>gi|38344714|emb|CAE05256.2| OSJNBb0115I09.18 [Oryza sativa Japonica Group]
Length = 1134
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+ A
Sbjct: 94 PPMPAVQP-------GQGRRDVQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 143
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 144 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 197
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 198 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDSKNLDVILGM 257
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 258 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 305
>gi|116309152|emb|CAH66252.1| OSIGBa0139I12.1 [Oryza sativa Indica Group]
Length = 1585
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A +P + + + A Q
Sbjct: 534 VCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNVPAP-KARVNHVAAAEAQ 581
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A +G V + + + G + S
Sbjct: 582 NAPDVVLGTFSVNSIPATMLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFS 641
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 642 TQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGIIDCANRKVTLTSS-NGE 700
Query: 445 TVQLTGYDSLPPALANHGEI-NQLLLQE 471
TV + S P +HG + NQ+ LQE
Sbjct: 701 TVSF--FVSSP---KSHGVVLNQVTLQE 723
>gi|77555127|gb|ABA97923.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1758
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P + +Q +A P +
Sbjct: 617 QGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAP---PRSNNG 659
Query: 318 SLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPV 367
+ G T + G H + TIL DS ++H F++ + V
Sbjct: 660 GKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGV 719
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
+ GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 720 ERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQG 779
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 780 VV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 819
>gi|116308918|emb|CAH66048.1| OSIGBa0131F24.2 [Oryza sativa Indica Group]
Length = 1437
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
++L DS +TH FL+ S A +G V + + + G +SS+ C + + F
Sbjct: 339 ASVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVSSTQYCPSATIEIEEVPF 398
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
LL D++LG +WL R G I K+T+ + G+TV P+
Sbjct: 399 PSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS-NGETVSF-----FVPSPKY 452
Query: 461 HGEI-NQLLLQE 471
HG I NQ+ LQE
Sbjct: 453 HGVILNQVALQE 464
>gi|147855151|emb|CAN81740.1| hypothetical protein VITISV_009674 [Vitis vinifera]
Length = 771
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 325 ATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
+TP+ TM++ + V ILIDS STH ++ L V F V V++G +
Sbjct: 94 STPK-TMQVATKIGAQDVIILIDSESTHNLISERLTNLLRLLVVPMKTFIVRVSNGEHLR 152
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDF 432
G+ V V+ QG F L + LP+ G D+VLG L W F
Sbjct: 153 CQGQFEEVQVDLQGTSFSLTLYSLPLIGLDVVLGFNGSSYLALWNWRF 200
>gi|54287623|gb|AAV31367.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 92/240 (38%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P +
Sbjct: 550 PPTPAVQP-------SQGRRDVQGQQRLCFNC---FEPGHFADKCPKP-----------R 588
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 589 RQQGQAP---PHSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 645
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F+ + V + GGV+++ VP+ QG F D LL
Sbjct: 646 HSFIYVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIEIQGIPFPSDLILLDTK 705
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 706 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVGSSELHQIGLSE 761
>gi|208609060|dbj|BAG72152.1| hypothetical protein [Lotus japonicus]
Length = 1369
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/380 (20%), Positives = 136/380 (35%), Gaps = 86/380 (22%)
Query: 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQED-----RNNNQPL 55
+T +E RV+ L E EV +Q +L+ L LS + R + + R++ +
Sbjct: 3 LTRGAMESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHN 62
Query: 56 QINNQQPEPAGRIG---GALVQPRHI------------------RLDFLVLSGENPTSLI 94
++ + R G G+ R R+D + +G + +
Sbjct: 63 SVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWV 122
Query: 95 FRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQF---- 150
+ E++ RL+ + E + + + + ++ A+ W+ W E+ W FK+AL +F
Sbjct: 123 TKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPAL 182
Query: 151 ---------GTFEDGD-----------AVGTQNLPESFFISCFLSGLREDIKIGVQMLKP 190
+ G A +N FL+GL+E+IK +++
Sbjct: 183 LQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPA 242
Query: 191 ASLLQTFELA--------------------RFQEEYAAVSNRRIPPR-PSMSRPSPPLLN 229
L + + A R +E V R S R + +N
Sbjct: 243 DDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSKGRIANSYVN 302
Query: 230 ------------SSPTITKTGGSSQPSLLGP-PPPGLPPFRRLSVAEQTERRAKGLCFNC 276
++ GG+ G P +RL+ E ER KGLCF C
Sbjct: 303 FQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
Query: 277 DEQFKPGHRC--KAPQLLLL 294
+++ H C K QL+L+
Sbjct: 363 GDKWGKEHICSMKNYQLILM 382
>gi|77555576|gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 625 QGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPHPNNGGKDVIRGRVNHVTA 681
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 682 E-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 735
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 736 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 794
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP E++Q+ L E
Sbjct: 795 TVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 827
>gi|357516397|ref|XP_003628487.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355522509|gb|AET02963.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 544
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 49/373 (13%)
Query: 98 EQYQRLAALLETDVLSLAIGHLDGDAVPWY-----------HWLEQTMGNMTWAQFKRAL 146
E+ R+ E + + L +A WY +LE GNM+ ++
Sbjct: 77 ERIFRVMQCSEVQKVRFGMHMLAEEADDWYFPEDVRGKKEIEFLELKQGNMSVVEYAAKF 136
Query: 147 VTQFGTFEDGDAVGTQNLPESFFISC--FLSGLREDIK--IGVQMLKPASLLQTFELARF 202
V + F T F C F + LR DIK IG Q ++ S L + R
Sbjct: 137 V-ELAKFYPHYTAETAE-----FSKCIKFENCLRVDIKRAIGYQQIRIFSDLVS--RCRI 188
Query: 203 QEE-----YAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGL---- 253
EE Y +S R + SRP P + + +P+ P +
Sbjct: 189 YEEDTKDHYKVMSER--SGKGQQSRPKPYSAPADKGKQRLNDERRPNRRDAPAEIVCYKC 246
Query: 254 -PPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELP 312
+ +V + E++ CF C ++ CK ++ + + E+ ++ + P
Sbjct: 247 GDKGHKSNVCTKDEKK----CFRCGQKGHTLADCKRGDVVCYNYN-EEGHISSQCTQ--P 299
Query: 313 ETLEVSLK--ALTGATPQNTMRL-KGN--LKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
+ + K ALTG N RL +G + +ID+ +TH F+ A + G +
Sbjct: 300 KKVRTGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIAIECAYKLGLVL 359
Query: 368 TTTT-QFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLG 426
+ + V G++++S C P++ G F +D LP++G +++ G WL
Sbjct: 360 SYMKGEMVVETPAKGLVTTSLVCLRCPLSMFGRDFEVDLVCLPLTGMNVIFGMNWLEYNR 419
Query: 427 AILWDFSKLTMQF 439
+ FSK T+ F
Sbjct: 420 VHINCFSK-TVHF 431
>gi|19881766|gb|AAM01167.1|AC113336_19 Putative retroelement [Oryza sativa Japonica Group]
gi|110288687|gb|ABB46920.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 892
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LC+NC F+PGH +C P+ A + + + +
Sbjct: 636 QGRRDAQGPQRLCYNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTA 692
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 693 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 746
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ +
Sbjct: 747 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVECARRT 806
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+ Q V PP E++Q+ L E
Sbjct: 807 VTLYRGPEQPVVFFA----PPTSVRSSELHQIGLSE 838
>gi|116317882|emb|CAH65910.1| OSIGBa0102O13.1 [Oryza sativa Indica Group]
Length = 1332
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 96/416 (23%), Positives = 159/416 (38%), Gaps = 80/416 (19%)
Query: 108 ETDVLSLAIGHLDGDAVPWY-HWLEQTMGN--MTWAQFKRALVT-------------QFG 151
E + +S A L G A W+ H+ + +G +TW +F A +F
Sbjct: 101 EQEKVSFASHQLHGPAAEWWDHFRQGRVGGEPITWQEFTAAFKKTHIPTGVVALKKREFR 160
Query: 152 TFEDGDAVGTQNL----------PESFFIS-----CFLSGLREDIKIGVQMLKPASLLQT 196
G T+ L PE FL GL +++ + Q
Sbjct: 161 ALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDELSYALMSTDFRDFQQL 220
Query: 197 FELARFQEEYAA----VSNRRIPPRP-----SMSRPSPPLLNSSPTITKTGGSSQPSLLG 247
+ A QE+ V+ ++P P S+ RP N++ T G+ +++
Sbjct: 221 VDKAIRQEDNNQRPRLVTGPQVPSYPQGGSSSVVRPQRQFYNNN---TGNRGNDNRNMVA 277
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIED 300
P V Q R+ +G +CFNC + PGH +C P+ +
Sbjct: 278 RPAA-------TPVPNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV-------- 319
Query: 301 KDEQAEALEELPETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNS 357
K+ A +P + + + A QN + G + + +L DS +TH FL+
Sbjct: 320 KNVPAPNNSNVPAP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPAIVLFDSGATHSFLSK 378
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVL 417
S A ++G V + + + G S+ C V + + F LL D++L
Sbjct: 379 SFASKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFPSSLILLESKDLDVIL 438
Query: 418 GAEWLRS-LGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
G +WL G I K+T+ + G+TV + S P + HG + NQ+ LQE
Sbjct: 439 GMDWLTCHRGVIDCANRKVTLTNS-NGETVSF--FASSPKS---HGVVLNQVALQE 488
>gi|147781636|emb|CAN75959.1| hypothetical protein VITISV_003125 [Vitis vinifera]
Length = 462
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
+H+P F L + LP++G D+VLG +WL LG ++ ++ K+TM+F W+ Q +T
Sbjct: 8 NHIP-------FVLTLYSLPLTGLDLVLGIQWLEQLGLVMCNWQKMTMEFQWEDQECTVT 60
Query: 450 GYDSLP 455
D P
Sbjct: 61 IKDGFP 66
>gi|110748572|gb|ABG89853.1| unknown [Phyllostachys edulis]
Length = 203
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 75 PRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +L F G E+P + RCEQ+ R E+D + LA HL G A WY+ LE+
Sbjct: 66 PRMHKLLFPTFDGKEDPLGWLNRCEQFFRCQQTPESDKVWLASYHLVGSAQQWYYQLERD 125
Query: 134 MGNMTWAQFKRALVTQFG------------------TFEDGDA------VGTQNLPESFF 169
G W FK +FG T ED +LP S
Sbjct: 126 DGEPPWQLFKDYCNLRFGLPIRNNFLGELAKLQAVSTMEDYQEEFLALLCRADSLPASNQ 185
Query: 170 ISCFLSGLREDIKIGVQM 187
+ F+SGL E ++ V++
Sbjct: 186 VQLFMSGLMEPVRTDVEL 203
>gi|116317795|emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group]
Length = 1481
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE---QAEALEE 310
V Q R+ +G +CFNC + PGH +C P+ + + + +A
Sbjct: 304 VQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRVKNVPTPNNSNAPAPKARVNHV 360
Query: 311 LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + G P N++ T+L DS +TH FL+ S A ++G V +
Sbjct: 361 AAAEAQNAPDVVLGTFPVNSI---------PATVLFDSGATHSFLSKSFASKHGMEVVSL 411
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C V + + F LL D++LG +WL R G I
Sbjct: 412 GRPLLVNTPGNQVFSTRYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVID 471
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K T+ + G+TV + S P + HG + NQ+ LQE
Sbjct: 472 CANRKGTLTNS-NGETVSF--FASSPKS---HGVVLNQVALQE 508
>gi|21742535|emb|CAD40160.1| OSJNBb0069N01.2 [Oryza sativa Japonica Group]
gi|38344505|emb|CAE05184.2| OSJNBa0013A04.21 [Oryza sativa Japonica Group]
Length = 1717
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+
Sbjct: 567 PPMPAVQP-------GQGRRDVQGPQRLCFNC---FEPGHFADKCPKPRRQQGQPPPRSN 616
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + + LT TP + G H + TIL DS ++H F++
Sbjct: 617 NGGKDVIRDRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPF 670
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 671 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 730
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL I+ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 731 NWLAQFQGIV-DCARRTVTL-YRGPEQPVVFF--APPTSISSSELHQIGLSE 778
>gi|20177631|gb|AAM14686.1|AC097446_15 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430230|gb|AAP52176.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1859
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 26/231 (11%)
Query: 248 PPPPGLPPF--RRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKD 302
PP P + P RR + +Q LCFNC F+PGH +C P+ A +
Sbjct: 734 PPTPTVQPGQGRRDTQGQQR------LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNN 784
Query: 303 EQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLA 360
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 785 GGKDVIRGRVNHV-TAEDVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFV 838
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 839 GRNQLGVERLRNPLLITTPGGVMTAKYFSPAVPIEIQGIPFPSDLILLDTKNLDVILGMN 898
Query: 421 WLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 899 WLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 945
>gi|22539074|gb|AAN01246.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431332|gb|AAP53127.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1045
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + P + A+ +R LCFNC F+P H +C P+ A +
Sbjct: 610 PPTPTVQPVQGRRDAQGQQR----LCFNC---FEPRHFADKCPKPRRQQGQAPPRPNNGG 662
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ + + LT TP + G H + TIL DS ++H F++ +
Sbjct: 663 KDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPFVGR 716
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 717 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 776
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 777 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 821
>gi|21672017|gb|AAM74379.1|AC116603_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 987
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
L FNC+ KPGH +C P+ K QA E + + + GA P
Sbjct: 223 LYFNCN---KPGHMVGKCPKPR------RAGPKLVQARLNHASTEEARSAPEVILGAYPV 273
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK 388
N++ TIL DS +TH F++ A + + GG ++++
Sbjct: 274 NSI---------PATILFDSGATHSFISKRFAGAHRLYLVKLKIPMRVHTPGGGMTTTHY 324
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
C V V QG F + LL DI+LG +WL R G I D + T++ T
Sbjct: 325 CPSVTVEIQGLIFPANLILLESKDLDIILGMDWLTRHRGVI--DCTSRTIKLT 375
>gi|255537958|ref|XP_002510044.1| conserved hypothetical protein [Ricinus communis]
gi|223550745|gb|EEF52231.1| conserved hypothetical protein [Ricinus communis]
Length = 181
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEY-------AAVSNR-RIP 215
LPE + ++ FLSGL+++I+I V+ML P SL Q + LAR QE Y +NR +I
Sbjct: 57 LPEDYSLNFFLSGLKDEIRIPVRMLGPKSLQQAYALARMQESYLTATKLPKTYANRPQIT 116
Query: 216 PRPS 219
P PS
Sbjct: 117 PNPS 120
>gi|78708468|gb|ABB47443.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1494
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET--L 315
Q R A+G LCFNC F+PGH +C P + +Q +A P
Sbjct: 329 QGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAPPR-PNNGGK 373
Query: 316 EVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+V + T ++ + + G H + TIL DS ++H F++ + V
Sbjct: 374 DVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVER 433
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ GGV+++ VP+ QG F D LL D++LG WL ++
Sbjct: 434 LRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLGTKNLDVILGMNWLAQFQGVV 493
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 494 -DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 531
>gi|77556441|gb|ABA99237.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1790
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 91/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 606 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 655
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 656 NGGQDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 709
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 710 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 769
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E+ Q+ L E
Sbjct: 770 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELQQIGLSE 817
>gi|38347308|emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
Length = 2388
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 28/228 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+ A
Sbjct: 1309 PPMPAMQP-------GQGRRDVQGPQCLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 1358
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 1359 NGGKDVIRGRVNHVTAE-DVLT--TPDVII---GTFLIHSIPATILFDSGASHSFISVPF 1412
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 1413 VGRNQLGVERLRNPLLITTPGGVMTAKNYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 1472
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQL 467
WL ++ D ++ T+ ++G + + PP + E++Q+
Sbjct: 1473 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQI 1516
>gi|4539660|gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]
Length = 1484
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 86/198 (43%), Gaps = 28/198 (14%)
Query: 272 LCFNCDEQFKPGH--RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQN 329
+ ++C E+F P + R P ++ + AE ++E PE + G N
Sbjct: 346 MSYDCPEKFNPQYNDRRSTPNSAKVN------NVAAETVQEGPEIM-------MGTFSIN 392
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
++ T+L DS ++H F++ + + + P+ + + GG I S +C
Sbjct: 393 SI---------PATVLFDSGASHTFISQAFVRVHSLPLVAMNTPMLVNSPGGTIPVSLRC 443
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
++ +G F + ++ SG D++LG +W++ + ++ + T KG+ + +
Sbjct: 444 PSASLSLRGVDFPISPMVMRTSGIDVILGLDWMKQHATNINCKERVVVLTTPKGERISVD 503
Query: 450 GYDSLPPALANHGEINQL 467
P A ++NQL
Sbjct: 504 VTMQAPLA----AKVNQL 517
>gi|62734416|gb|AAX96525.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550230|gb|ABA93027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1506
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 94/226 (41%), Gaps = 42/226 (18%)
Query: 228 LNSSPTITKT-GGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH-- 284
LN +P+ K S QP+L P R + E+ E LCFNC+ KPGH
Sbjct: 420 LNPTPSSLKILAQSVQPAL---------PERPKRLGEKPE-----LCFNCN---KPGHTV 462
Query: 285 -RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVT 343
+C P+ K QA E + + + + G P N+
Sbjct: 463 GKCPKPR------RAGPKFVQARVNHASAEEAQSAPEVILGTFPVNST---------PTV 507
Query: 344 ILIDSSSTHIFLNSSLAKQYGCP-VTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
IL DS +TH F++ A + V +V GG ++++ C + V QG F
Sbjct: 508 ILFDSGATHSFISKRFAGAHELSLVKLKIPMRVHTPRGG-MTTTHYCPSMTVEIQGLIFP 566
Query: 403 LDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
+ LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 567 ANLILLESKDLDVILGMDWLTRHKGVI--DCASRTIKLTNAKGEVV 610
>gi|62733129|gb|AAX95246.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550683|gb|ABA93480.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1311
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
T+L+DS ++H F++ S A Q+ P + G + + C V + +G +F
Sbjct: 279 TVLLDSGASHSFVSRSCASQHQFPTIPLKCSLLIQTPGSEMRTQTGCPRVKIEIEGVEFF 338
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPP---ALA 459
+ +L D++LG +WL S A+L S+ KG+ V + PP AL
Sbjct: 339 ANLIMLDTPQLDVILGMDWLHSSKAVLDCGSRSITLENSKGERVNFKAIVN-PPWKGALV 397
Query: 460 NHGEINQL 467
++ E+++L
Sbjct: 398 HNMEVSEL 405
>gi|147840922|emb|CAN73185.1| hypothetical protein VITISV_028246 [Vitis vinifera]
Length = 674
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 293 LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTH 352
++D ++ KD + ++ LEVS+ ALT TMR+ + + LID+ TH
Sbjct: 374 VVDEKLQMKDTLGDQVK-----LEVSIHALTSWASPRTMRVAAAIGSQHMIALIDNGFTH 428
Query: 353 IFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSG 412
FL+ +A+ + T F + VA + G V +N QG F + LP++
Sbjct: 429 NFLSEKVARFLRLLMVPTKSFAIHVASSERLLCQGHFEKVQMNLQGITFSFTLYSLPLTR 488
Query: 413 CDIVLG 418
D+ G
Sbjct: 489 LDMKNG 494
>gi|13129460|gb|AAK13118.1|AC080019_10 Polyprotein [Oryza sativa Japonica Group]
Length = 1781
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 616 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTA 672
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 673 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 726
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 727 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLGTKNLDVILGMNWLAQFQGVV-DCARR 785
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP E++Q+ L E
Sbjct: 786 TVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 818
>gi|357450377|ref|XP_003595465.1| hypothetical protein MTR_2g048010 [Medicago truncatula]
gi|355484513|gb|AES65716.1| hypothetical protein MTR_2g048010 [Medicago truncatula]
Length = 468
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA-TPQNTM 331
CF C ++ CK ++ + + ++ E + + ALTG TP
Sbjct: 146 CFRCGQKGHSLAECKRGDIICYNCN-----GSSQCPEPKKTRIGGKVFALTGTQTPNEDR 200
Query: 332 RLKGN--LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSGK 388
++G + +ID+ +TH F+ A + G V+ + V G +++S
Sbjct: 201 LIRGTCFFNSTPLIAIIDTGATHCFIAIECAYKLGLDVSDMKGEMVVETPAKGSVTTSLV 260
Query: 389 CSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
C P++ G F +D LP++G D++ G WL + FSK T+ F+
Sbjct: 261 CLRCPISMFGRDFVIDLVCLPLTGMDVIFGMNWLEYNRVHINCFSK-TVHFS 311
>gi|77555076|gb|ABA97872.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 923
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 26/232 (11%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLL---DADIED 300
P P P +L+ EQ + G+CFNC E PGH +C P+ + + +
Sbjct: 107 APRPVATPTQHQLAKREQGNK--PGVCFNCGE---PGHYSDKCLKPRRVKVVPAQNNSTA 161
Query: 301 KDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA 360
+A + + + G P N++ T+L DS +TH FL+ S A
Sbjct: 162 PASKARVNHVAAAEAQCAPDVILGTFPVNSV---------PATVLFDSGATHSFLSMSFA 212
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+G + + SS + V + QG F + LL D++LG +
Sbjct: 213 GNHGMEIEDLRHPLMVSTLSNQALSSQRSPSVRIEIQGVPFLANLILLESKHLDVILGMD 272
Query: 421 WL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL R G I K+T+ GQ V + P +NQ+ L+E
Sbjct: 273 WLARYKGVIDCANRKVTLTSN-DGQVVTVHAL----PFEPLRSSLNQVTLEE 319
>gi|62734325|gb|AAX96434.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550057|gb|ABA92854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1409
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 333 QGRRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTA 389
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 390 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFMGRNQLGVERLRNPLL 443
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 444 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 502
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP ++ E++Q+ L +
Sbjct: 503 TVTL-YRGPDQPVVFF--APPTSVDNSELHQIGLSK 535
>gi|78708031|gb|ABB47006.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1826
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C+ P
Sbjct: 642 PPTPTVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCQKP-----------G 680
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 681 RQQGQAP---PRSNNGGKDVIWGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGAS 737
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+ + VP+ QG F D LL
Sbjct: 738 HSFISVPFVGRNQLGVQRLRNPLLITTPGGVMIAKYYSPAVPIEIQGIPFPSDLILLDTK 797
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 798 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQIGLSE 853
>gi|255573330|ref|XP_002527592.1| conserved hypothetical protein [Ricinus communis]
gi|223533031|gb|EEF34794.1| conserved hypothetical protein [Ricinus communis]
Length = 94
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 265 TERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTG 324
+RRAKGLCFNCDE+F+ GH CK QLL L E +E ++SL A+
Sbjct: 2 ADRRAKGLCFNCDEKFEIGHNCK--QLLWL-----------EVIENEEVDPQISLHAIAR 48
Query: 325 ATPQNTMRLKG 335
TM+ +G
Sbjct: 49 TQNHQTMQFRG 59
>gi|38344564|emb|CAD39906.2| OSJNBa0065B15.10 [Oryza sativa Japonica Group]
Length = 1500
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 34/235 (14%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQ 304
PP P + P Q R A+G LCFNC E +C P + +Q
Sbjct: 429 PPAPAVQP-------GQGRRDAQGQQRLCFNCFEHGHFADKCPKP-----------RRQQ 470
Query: 305 AEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLN 356
+A P +V+ + T ++ + + G H + TIL DS ++H F++
Sbjct: 471 GQAPPR-PNNGGKDVTRGRVNHVTAEDMLTTPDVIVGTFLIHSIPATILFDSGASHSFIS 529
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
+ V + GGV+++ VP+ QG F D LL D++
Sbjct: 530 VPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVI 589
Query: 417 LGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
LG WL ++ D ++ T+ ++G + + PP A ++QL L E
Sbjct: 590 LGMNWLAQFQGVV-DCARRTVTL-YRGPDQPVVFF--APPTSAGSSVLHQLGLPE 640
>gi|77555063|gb|ABA97859.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1806
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC F+PGH +C P+ A + + + + LT TP
Sbjct: 657 LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAE-DVLT--TPD 710
Query: 329 NTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
+ G H + TIL DS ++H F++ + V + GGV+++
Sbjct: 711 VIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAK 767
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
VP+ QG F D LL D++LG WL ++ D ++ T+ ++G
Sbjct: 768 YYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQ 825
Query: 447 QLTGYDSLPPALANHGEINQLLLQE 471
+ + PP + E++Q+ L E
Sbjct: 826 PVVFF--APPTSVSSSELHQIGLSE 848
>gi|108862564|gb|ABA97616.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1423
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC F+PGH +C P+ A + + + + LT TP
Sbjct: 640 LCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAE-DVLT--TPD 693
Query: 329 NTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
+ G H + TIL DS ++H F++ + V + GGV+++
Sbjct: 694 VIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAK 750
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
VP+ QG F D LL D++LG WL ++ D ++ T+ ++G
Sbjct: 751 YYSPTVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGLV-DCARRTVTL-YRGPEQ 808
Query: 447 QLTGYDSLPPALANHGEINQLLLQE 471
+ + PP + E++Q+ L E
Sbjct: 809 PVVFF--APPTSVSSSELHQIGLSE 831
>gi|32489197|emb|CAE04382.1| OSJNBa0027G07.24 [Oryza sativa Japonica Group]
gi|38347091|emb|CAE02563.2| OSJNBa0006M15.6 [Oryza sativa Japonica Group]
Length = 1635
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 34/213 (15%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC F+PGH +C P + +Q +A P + + G
Sbjct: 603 LCFNC---FEPGHFADKCPKP-----------RRQQGQAP---PRSNNGGKDVIRGRVNH 645
Query: 329 NTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVA 378
T + G H + TIL DS ++H F++ + V +
Sbjct: 646 VTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITT 705
Query: 379 DGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
GGV+++ VP+ QG F D LL D++LG WL ++ D ++ T+
Sbjct: 706 PGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVT 764
Query: 439 FTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++G + + PP + E++Q+ L E
Sbjct: 765 L-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 794
>gi|77554522|gb|ABA97318.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 38/202 (18%)
Query: 272 LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTM 331
LCFNC F+PGH D + + +Q +A ++
Sbjct: 284 LCFNC---FEPGH--------FADKCPKSRRQQGQAPPDV-------------------- 312
Query: 332 RLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
+ G H + TIL DS ++H F++ + V + GGV+++
Sbjct: 313 -IVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYS 371
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLT 449
VP+ QG F D LL D++LG WL ++ D ++ T+ ++G +
Sbjct: 372 PAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPKQPVV 429
Query: 450 GYDSLPPALANHGEINQLLLQE 471
+ PP + E++Q+ L E
Sbjct: 430 FF--APPTSVSSSELHQIGLSE 449
>gi|21671891|gb|AAM74253.1|AC074355_15 Putative retroelement [Oryza sativa Japonica Group]
gi|31430430|gb|AAP52347.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1140
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ +P + + + A Q
Sbjct: 181 ICFNCGD---PGHYADKCPKPRRV--------KNAPTPNNSNVPAP-KARVNHVAAAEAQ 228
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A +G V + + + G + S
Sbjct: 229 NAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFS 288
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 289 TQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NGE 347
Query: 445 TVQLTGYDSLPPALANHGEI-NQLLLQE 471
TV + S P HG I NQ+ LQE
Sbjct: 348 TVSF--FVSSP---KYHGVILNQVALQE 370
>gi|50300553|gb|AAT73694.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1778
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 28/228 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P P Q R A G LCFNC F+PGH +C P+ A
Sbjct: 603 PPTPAGQPV-------QGRRDASGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 652
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 653 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 706
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 707 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 766
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQL 467
WL ++ D ++ T+ ++G + + PP E++Q+
Sbjct: 767 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQI 810
>gi|21743213|emb|CAD40068.1| OSJNBa0085C10.21 [Oryza sativa Japonica Group]
Length = 1825
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P+ A
Sbjct: 641 PPTPTVQP-------GQGHRDAQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPN 690
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 691 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 744
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 745 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 804
Query: 420 EWLRSLGAILWDFSKLTM 437
WL ++ D ++ T+
Sbjct: 805 NWLAQFQGVV-DCARRTV 821
>gi|242117582|dbj|BAH80065.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 821
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A +P + + + A Q
Sbjct: 110 VCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNVPAP-KARVNHVAAAEAQ 157
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+ DS +TH FL+ S A +G V + + + G + S
Sbjct: 158 NAPDVVLGTFPVNSIPATVFFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFS 217
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 218 TQYCPSATIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLT-SSNGE 276
Query: 445 TVQLTGYDSLPPALANHGEI-NQLLLQE 471
TV + S P HG + NQ+ LQE
Sbjct: 277 TVSF--FVSSP---KYHGVVLNQVALQE 299
>gi|255560078|ref|XP_002521057.1| conserved hypothetical protein [Ricinus communis]
gi|223539760|gb|EEF41341.1| conserved hypothetical protein [Ricinus communis]
Length = 211
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 57 INNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
+N Q+ E R G PR R + EN + +QR E + +SLA
Sbjct: 12 LNTQRKEIDSRDGSINRAPREPRNFNGIDRTENRQNFF----HHQRTP---EEERVSLAS 64
Query: 117 GHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDGDAVG---------------- 160
HL+ DA WY L + +TWA FK +FG + +G
Sbjct: 65 LHLEEDAQVWYLKLARDKPQLTWANFKYHCNLRFGPPTGSNKLGELSKLKQTGSVEQFQR 124
Query: 161 --------TQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNR 212
T +L + F+ GLREDI + V++ P L LA+ E R
Sbjct: 125 QFEKLSAQTASLTSEQGMQIFIGGLREDIAVEVKLHNPPDLSTAMSLAQLYE-------R 177
Query: 213 RIPPRPSMSRPS 224
RI R + ++PS
Sbjct: 178 RITTRKAAAQPS 189
>gi|77551535|gb|ABA94332.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1668
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 33/185 (17%)
Query: 261 VAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET 314
V Q R +G LCFNC F+PGH +C P + +Q +A P +
Sbjct: 591 VPGQGRRDVQGQQRLCFNC---FEPGHFADKCPKP-----------RRQQGQAP---PRS 633
Query: 315 LEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYG 364
S + G T + G H + TIL DS ++H F++ +
Sbjct: 634 NNGSKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQ 693
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS 424
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 694 LGVERLRNPMLITTPGGVMTAKFYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQ 753
Query: 425 LGAIL 429
++
Sbjct: 754 FQGVV 758
>gi|32489461|emb|CAE05815.1| OSJNBa0028M15.7 [Oryza sativa Japonica Group]
Length = 1822
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 638 PPTPTVQP-------GQGRRDAQGPQRLCFNC---FEPGHFADKCPKP-----------R 676
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL DS ++
Sbjct: 677 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGAS 733
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GV+++ VP+ QG F D LL
Sbjct: 734 HSFISVPFVGRNQLGVERLRNPLLITTPEGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 793
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 794 NLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 849
>gi|77554807|gb|ABA97603.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1753
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 44/240 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC F+PGH +C P +
Sbjct: 569 PPTPAVQP-------GQGRRDAQGQQRLCFNC---FEPGHFADKCPKP-----------R 607
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSST 351
+Q +A P + + G T + G H + TIL +S ++
Sbjct: 608 RQQGQAP---PRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFNSGAS 664
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVS 411
H F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 665 HSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTK 724
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+++LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 725 NLNVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 780
>gi|38347301|emb|CAE02296.2| OSJNBa0042F21.3 [Oryza sativa Japonica Group]
gi|38347573|emb|CAE05006.2| OSJNBb0093G06.14 [Oryza sativa Japonica Group]
Length = 1529
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 40/238 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFN F+PGH +C P +
Sbjct: 566 PPTPAVQP-------GQGRRDAPGPQRLCFN---YFEPGHFADKCPKP-----------R 604
Query: 302 DEQAEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHI 353
+Q +A P +V+ + T ++ + + G H + TIL DS ++H
Sbjct: 605 RQQGQAPPR-PNNGGKDVNRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHS 663
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F++ + V + GGV+++ VP+ QG F D LL
Sbjct: 664 FISVPFVGRNQLGVERLRNPLIITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNL 723
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 724 DVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVGSSELHQIGLSE 777
>gi|358347725|ref|XP_003637905.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355503840|gb|AES85043.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 358
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
C+NC E+ +C P K + E +E P N +R
Sbjct: 94 CYNCGEKGHISTKCTKP-----------KKAAGKVFALNAEEVE---------QPDNLIR 133
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT-VADGGVISSSGKCSH 391
+ + +ID+ +TH F+++S ++ VT + V G +++S C+
Sbjct: 134 GMCFINSTPLIAIIDTGATHSFISASCVERLDLVVTPLLRGMVIDTPASGSVTTSFMCAK 193
Query: 392 VPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLG 426
PVN F LD LP+ D++ G +WL + G
Sbjct: 194 CPVNFGDVDFELDLVCLPLKHMDVIFGMDWLLAFG 228
>gi|357436173|ref|XP_003588362.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355477410|gb|AES58613.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 424
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
C+NC E+ +C P K + E +E P N +R
Sbjct: 156 CYNCGEKGHISTKCTKP-----------KKAAGKVFALNAEEVE---------QPDNLIR 195
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVT-VADGGVISSSGKCSH 391
+ + +ID+ +TH F+++S ++ VT + V G +++S C+
Sbjct: 196 GMCFINSTPLIAIIDTGATHSFISASCVERLDLVVTPLLRGMVIDTPASGSVTTSFMCAK 255
Query: 392 VPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLG 426
PVN F LD LP+ D++ G +WL + G
Sbjct: 256 CPVNFGDVDFELDLVCLPLKHMDVIFGMDWLLAFG 290
>gi|357503811|ref|XP_003622194.1| Cellular nucleic acid-binding protein-like protein, partial
[Medicago truncatula]
gi|355497209|gb|AES78412.1| Cellular nucleic acid-binding protein-like protein, partial
[Medicago truncatula]
Length = 509
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 25/155 (16%)
Query: 272 LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA---TPQ 328
+CFNC+E+ G +CK P K Q + ALTG +
Sbjct: 315 VCFNCNEEGHIGSQCKKP-----------KKAQTTG----------RVFALTGTQTESED 353
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSG 387
+ +R + ++ID+ +TH F+ A + G ++ + V G +++S
Sbjct: 354 HLIRGTCYFDSTPLVVIIDTGATHCFIAIDCAIKLGLAMSNINGEMVVETQAKGFVTTSL 413
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
CS P++ F +D LP SG D++ WL
Sbjct: 414 VCSRCPLSMFDHDFEIDLVCLPFSGMDVIPSMNWL 448
>gi|77554705|gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 595
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC E PGH +C P+ + + + A V+ GA P
Sbjct: 313 VCFNCGE---PGHYSDKCPKPRRV----KVVPAQNNSTAPVSKARVNHVAAAEAQGA-PD 364
Query: 329 NTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
+ G + V T+L DS +TH FL+ S A+ +G V + + SS
Sbjct: 365 VIL---GTFLVNSVPATVLFDSGATHSFLSMSFARNHGMEVEDLRRPLMVSTPSNQALSS 421
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQT 445
+ V + QG F + LL D++LG +WL R G I K+T+ + GQ
Sbjct: 422 QRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLT-SNDGQV 480
Query: 446 VQLTGYDSLPPALANHGEINQLLLQE 471
V + S P +NQ+ L+E
Sbjct: 481 VTVYALPSEP----LRSSLNQVSLEE 502
>gi|20177619|gb|AAM14674.1|AC097446_3 Putative polyprotein [Oryza sativa Japonica Group]
gi|22725914|gb|AAN04924.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|110288618|gb|ABB46768.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1433
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 36/236 (15%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC ++PGH +C P+ A
Sbjct: 320 PPTPTVQP-------GQGRRDAQGPQRLCFNC---YEPGHFADKCPKPRRQQGKAPPRSN 369
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFL 355
+ + + + T +N + + G H + TIL DS ++H F+
Sbjct: 370 NGGNDVIR----------GRVNHVTAENVLTTPDVIVGTFLIHSIPATILFDSGASHSFI 419
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDI 415
+ + V + G V+++ VP+ QG F D LL D+
Sbjct: 420 SVPFVGRNQLGVERLRNPLLITTPGVVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDV 479
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+LG WL ++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 480 ILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 531
>gi|86371679|gb|ABC94893.1| polyprotein [Oryza australiensis]
Length = 1469
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 147/413 (35%), Gaps = 91/413 (22%)
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWLEQT----MGNMTWAQFKRALVTQF-------- 150
L + E D + A L+G A W+ ++T G TW +F A F
Sbjct: 81 LVRVREADRVVFATNQLEGPASDWWDTYKETRAEDAGEPTWEEFTAAFRENFVPAAVMRM 140
Query: 151 -------------------GTFEDGDAVGTQNLP-ESFFISCFLSGLREDIK---IGVQM 187
F T +L E I F+ GL ++++ IG
Sbjct: 141 KKNEFRRLRQGNTSVQEYLNKFTQLARYATSDLADEEEKIDKFIEGLNDELRGPMIGQDH 200
Query: 188 LKPASLLQTFELARFQEEYAAVSNRR------------IPPRPSMSRPSPPLLNSSPTIT 235
SL+ ++ R + + V N R P RP + PS P +
Sbjct: 201 TSFQSLIN--KVVRLEHDQKVVDNNRKRRLAMARPFQGTPQRPKGATPS----GWKPNVP 254
Query: 236 KTGG---------SSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC 286
TG S+ P L P P P RR +V+ CFNC E + C
Sbjct: 255 ATGRPLASDHVNRSATPQLRTPTPTLAAPGRR-NVS----------CFNCGEFGHYSNSC 303
Query: 287 KAPQL--LLLDADIED-----KDEQAEALEELPETLEVS----------LKALTGATPQN 329
P+ + A++ L P E + ++A Q+
Sbjct: 304 PKPRNTPVRTGANVTPVRGTPTPAAGRGLFRTPLPNEAATGFRRGQVNHVRAEEAQEDQS 363
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
+ ++ V +L DS ++H F++S ++KQ+ + + + GG I+ C
Sbjct: 364 VLMGMFSINSTLVKVLFDSGASHSFISSQVSKQHHLHQVALKRPMLVHSPGGDITVPHAC 423
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+VP+ + F + +L D++LG +WL ++ G I ++T+ W
Sbjct: 424 INVPIRIRDVVFLSNLMVLSPQTIDVILGMDWLTKNNGIIDCSRREVTVSTPW 476
>gi|20177617|gb|AAM14672.1|AC097446_1 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1342
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 239 GSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQL 291
GSSQ L P +P + S +Q +R +G +CFNC + PGH +C P+
Sbjct: 248 GSSQKPRLTLGPQSMP--QGASTQQQPAKREQGSKPMVCFNCGD---PGHYADKCPKPRR 302
Query: 292 LLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDS 348
+ K A++ +P + + + + A Q+ + G + V T+L DS
Sbjct: 303 V--------KVVPAQSNSAVPAS-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDS 353
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
+TH FL+ S A +G V + + S + +V + QG F + LL
Sbjct: 354 GATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIEIQGVPFLANLILL 413
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
D++LG +WL R G I K+T+
Sbjct: 414 ESKDLDVILGMDWLARHKGVIDCANRKVTL 443
>gi|116309029|emb|CAH66143.1| OSIGBa0114M03.1 [Oryza sativa Indica Group]
Length = 1571
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 235 TKTGGSSQPSL-LGPP--PPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH--- 284
T+ G + +P L LGP P G P +Q +R +G +CFNC + PGH
Sbjct: 466 TQQGNNQKPRLTLGPQSVPQGAP------TQQQPAKREQGSKPVVCFNCGD---PGHYAD 516
Query: 285 RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV- 342
+C P+ + K A++ +P + + + + A Q+ + G + V
Sbjct: 517 KCPKPRRV--------KVVPAQSNSTIPAS-KARVNHVAAAEAQDAPDVILGTFLVNSVP 567
Query: 343 -TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 568 ATVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 627
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+ LL D++LG +WL R G I K+T+
Sbjct: 628 LANLILLESKDLDVILGMDWLARHKGVIDCANRKITL 664
>gi|240255473|ref|NP_189700.4| aspartyl protease family protein [Arabidopsis thaliana]
gi|332644137|gb|AEE77658.1| aspartyl protease family protein [Arabidopsis thaliana]
Length = 603
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 308 LEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
LE+ +V ++ T T MR G + H V ++IDS +T+ F++ LA P
Sbjct: 261 LEDFKTIRQVKRQSTTEFTKGKDMRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPT 320
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV--SGCDIVLG 418
+TT Q V + I + G C + + Q + + +F LL + + D++LG
Sbjct: 321 STTNQASVLLGQRQCIQTIGTCFGINLLVQEVEINENFLLLDLTKTDVDVILG 373
>gi|38567914|emb|CAD41578.3| OSJNBa0088I22.10 [Oryza sativa Japonica Group]
Length = 1157
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 93/249 (37%), Gaps = 58/249 (23%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKR 144
G+NP CE Y + + + + +A + G+A W + + +TW++
Sbjct: 133 FDGDNPIMWKSNCEAYFDVYGIHPGNWVKVATLNFTGNAAFWLQAVRSQLEGVTWSELCE 192
Query: 145 ALVTQFGT----------------------FEDGDAVGTQ------NLPESFFISCFLSG 176
+ T+F E D + Q +L +F++ F+ G
Sbjct: 193 KICTRFNKDRQQALIRQWIKICQTGSVADYVEQFDCIMHQMMAYDPSLKPVYFVTKFVEG 252
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEY-----------------AAVSNRRIPPRPS 219
LR I+ + + + L LA QEE +V P P
Sbjct: 253 LRHAIRSAILLQRLGDLNVACTLALLQEEALEGDKPKESKKSDGYQKQSVKGAMPLPLPP 312
Query: 220 MSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQ 279
++ PP++++ T+ S+ + RLS A ++ RR+KGLCF E+
Sbjct: 313 TTKGGPPIISNDRRGTELSNHSRE------------YDRLS-ALKSYRRSKGLCFVYGEK 359
Query: 280 FKPGHRCKA 288
+ H+C +
Sbjct: 360 WGRDHKCAS 368
>gi|22725913|gb|AAN04923.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1729
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 239 GSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQL 291
GSSQ L P +P + S +Q +R +G +CFNC + PGH +C P+
Sbjct: 635 GSSQKPRLTLGPQSMP--QGASTQQQPAKREQGSKPMVCFNCGD---PGHYADKCPKPRR 689
Query: 292 LLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDS 348
+ K A++ +P + + + + A Q+ + G + V T+L DS
Sbjct: 690 V--------KVVPAQSNSAVPAS-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDS 740
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
+TH FL+ S A +G V + + S + +V + QG F + LL
Sbjct: 741 GATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIEIQGVPFLANLILL 800
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
D++LG +WL R G I K+T+
Sbjct: 801 ESKDLDVILGMDWLARHKGVIDCANRKVTL 830
>gi|62733030|gb|AAX95147.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549641|gb|ABA92438.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1535
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 18/214 (8%)
Query: 262 AEQTERRAKGLCFNCDEQFKPGHRCKAPQLL-LLDADIEDKDEQAEALEELPETLEV--S 318
A++ + G+CFNC E +C P+ + ++ A +A E +
Sbjct: 299 AKREQGNKPGVCFNCGELGHYSDKCPKPRRVKVVPAQNNSTAPATKARVNHVAAAEAQGA 358
Query: 319 LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVA 378
+ G P N++ T+L DS +TH FL+ S A +G + + + A
Sbjct: 359 PDVILGTFPVNSV---------PATVLFDSGATHSFLSMSFAGNHGMEIEDLRRPLMVSA 409
Query: 379 DGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
S + V + QG F + LL + D++LG +WL R G I K+T+
Sbjct: 410 PSNQALLSQRSPSVRIEIQGVPFLANLILLESNDLDVILGMDWLARYKGVIDCTNRKVTL 469
Query: 438 QFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
GQ V + S P + NQ+ L+E
Sbjct: 470 TSN-DGQVVTVHALPSEP----SRSSFNQITLEE 498
>gi|307104231|gb|EFN52486.1| hypothetical protein CHLNCDRAFT_138849 [Chlorella variabilis]
Length = 251
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 36/146 (24%)
Query: 88 ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALV 147
ENP + I E + L + + ++ A HL G A+ WY+ E MTW +FK+AL+
Sbjct: 14 ENPETFIRTVESAKGLYSWGDAQAMAFAGLHLKGKALDWYNIQEP----MTWLRFKKALI 69
Query: 148 TQFG--------------------TFEDGDAVGT-------QNLPESFFISCFLSGLRED 180
+FG + DA+ T NL +S F+SGLRED
Sbjct: 70 GRFGLEPSRMLAALTKRVQGEKESVRDYADALCTLVRHSQDPNL-QSTLRHFFMSGLRED 128
Query: 181 IKIGVQMLKPASLLQTFELARFQEEY 206
++ V+ +P +TFE A + EY
Sbjct: 129 VQRFVKTRRP----ETFEAAVAEGEY 150
>gi|110288617|gb|AAP52162.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1730
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 239 GSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQL 291
GSSQ L P +P + S +Q +R +G +CFNC + PGH +C P+
Sbjct: 635 GSSQKPRLTLGPQSMP--QGASTQQQPAKREQGSKPMVCFNCGD---PGHYADKCPKPRR 689
Query: 292 LLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDS 348
+ K A++ +P + + + + A Q+ + G + V T+L DS
Sbjct: 690 V--------KVVPAQSNSAVPAS-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDS 740
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
+TH FL+ S A +G V + + S + +V + QG F + LL
Sbjct: 741 GATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIEIQGVPFLANLILL 800
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
D++LG +WL R G I K+T+
Sbjct: 801 ESKDLDVILGMDWLARHKGVIDCANRKVTL 830
>gi|38568042|emb|CAE05353.3| OSJNBa0065J03.12 [Oryza sativa Japonica Group]
Length = 1599
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 580 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTA 636
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 637 E-DVLT--TPDVII---GMFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 690
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GGV+++ VP+ QG F D LL D++LG WL ++ +
Sbjct: 691 ITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRT 750
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+ Q V PP + E++Q+ L E
Sbjct: 751 VTLYREPEQPVVFFA----PPTSVSSSELHQIGLSE 782
>gi|11994678|dbj|BAB02916.1| unnamed protein product [Arabidopsis thaliana]
Length = 546
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 308 LEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPV 367
LE+ +V ++ T T MR G + H V ++IDS +T+ F++ LA P
Sbjct: 204 LEDFKTIRQVKRQSTTEFTKGKDMRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPT 263
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV--SGCDIVLG 418
+TT Q V + I + G C + + Q + + +F LL + + D++LG
Sbjct: 264 STTNQASVLLGQRQCIQTIGTCFGINLLVQEVEINENFLLLDLTKTDVDVILG 316
>gi|18652524|gb|AAL77157.1|AC091732_8 Putative polyprotein [Oryza sativa Japonica Group]
gi|31431769|gb|AAP53495.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1839
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 83/224 (37%), Gaps = 37/224 (16%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC ++PGH +C P + +Q +A P +
Sbjct: 664 QGRRDAQGQQRLCFNC---YEPGHFADKCPKP-----------RRQQGQAP---PRSNNG 706
Query: 318 SLKALTGATPQNTMR--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPV 367
+ G T + G H + TIL DS ++H F++ + V
Sbjct: 707 GKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLRV 766
Query: 368 TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGA 427
+ GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 767 ERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQG 826
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ + + Q V PP E++Q+ L E
Sbjct: 827 VVVCARRTVTLYRGPEQPVVFFA----PPTSVRSSELHQIGLSE 866
>gi|116308884|emb|CAH66018.1| OSIGBa0105N24.2 [Oryza sativa Indica Group]
Length = 1608
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 473 VQNQPVRKEQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNIPA 521
Query: 314 TLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + A QN + G + + T+L DS +TH FL+ S A G V +
Sbjct: 522 P-KARVNHVAAAEAQNAPDVVLGTFPVNFIPATVLFDSGATHSFLSKSFASNQGMEVISL 580
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + G + S+ C + + F LL D++LG +WL R G I
Sbjct: 581 GRPLLVNTPGNQVFSTQYCPSATIEIEEVPFPSSLILLESKDRDVILGMDWLSRHRGVID 640
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P +HG I NQ+ LQE
Sbjct: 641 CANRKVTLTNS-NGETVSF--FASSP---KSHGVILNQVDLQE 677
>gi|326435848|gb|EGD81418.1| hypothetical protein PTSG_11842 [Salpingoeca sp. ATCC 50818]
Length = 390
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 111/315 (35%), Gaps = 59/315 (18%)
Query: 82 FLVLSGENPTSLIFRCEQYQRLAALLETD-VLSLAIGHLDGDAVPWYHWLEQTMGNMT-- 138
F +GE +F E + R + + D L LAI L G A+ WY L+ NM
Sbjct: 54 FSGATGERADDFLFCLETFVRYHRIDDDDQRLLLAISCLQGHALTWYRSLDPAPTNMHEL 113
Query: 139 ----WAQFK-----RALVTQFGTF-EDGDA-----------VGTQNLPESFFISCFLSGL 177
A FK R L Q +DG+ V ++ I F+ GL
Sbjct: 114 QEQLRASFKTIDEQRQLRDQLRRLRQDGNVQDYVFKFRQLMVQIDDMSRLDRIEAFIHGL 173
Query: 178 REDIKIGVQMLKPASLLQTFELA-RFQEEYAAVSN---RRIPPRPSMSRPSPPLLNSSPT 233
R + V P +L Q ++LA R+ Y ++ R PP PP +
Sbjct: 174 RPRTRQEVSFHGPDTLEQAYQLASRYDRNYTTANSAYRRGAPP------TQPPKFDDRAM 227
Query: 234 ITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLL 293
+ +P RRL+ E+ E R +G CF C + GH
Sbjct: 228 DIDAIRAQRP------------LRRLTDQERDELRRRGACFRCR---REGH--------- 263
Query: 294 LDADIEDKDEQAEALEELPETLEVSLKALTGATPQ-NTMRLKGNLKKHGVTILIDSSSTH 352
L AD ET V L+A T Q + +G + LID S
Sbjct: 264 LAADCPLNASDLGPASPTGETEAVLLQATDAVTSQARLLTFRGTIDGRPARTLIDPGSRM 323
Query: 353 IFLNSSLAKQYGCPV 367
L+ A ++G V
Sbjct: 324 NVLSRDYALRHGIAV 338
>gi|54287545|gb|AAV31289.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1721
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQ 304
PP P + + A+ +R LCFNC E PGH +C P+ A +
Sbjct: 571 PPTPAVQSGQGCRDAQGQQR----LCFNCFE---PGHFADKCPKPRRQQGQAPPRSNNGG 623
Query: 305 AEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQ 362
+ ++ + LT TP + G H + TIL DS ++H F++ +
Sbjct: 624 KDVIQGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGR 677
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V + GGV+++ VP+ QG F D LL D++LG WL
Sbjct: 678 NQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWL 737
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ D ++ T+ ++G + + PP + E++Q+ L E
Sbjct: 738 AQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELHQIGLSE 782
>gi|116311090|emb|CAH68019.1| H0807C06-H0308C08.6 [Oryza sativa Indica Group]
Length = 1260
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K+ A +P + + + A Q
Sbjct: 181 VCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNVPAP-KARVNHVAAAEAQ 228
Query: 329 NTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
N + G + + T+L DS +TH FL+ S A G V + + + G + S
Sbjct: 229 NAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNLGMEVVSLGRPLLVNTPGNQVFS 288
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ C + + F LL D++LG +WL R G I K+T+ + G+
Sbjct: 289 TQYCPSATIEIEEVPFPSSLNLLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NGE 347
Query: 445 TVQLTGYDSLPPALANHG-EINQLLLQE 471
TV + S P HG +NQ+ LQE
Sbjct: 348 TVSF--FVSSP---KYHGVNLNQVALQE 370
>gi|52353549|gb|AAU44115.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1717
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 30/224 (13%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S Q R+ +G +CFNC + PGH +C P+ + K+ A +P
Sbjct: 563 SAQNQPVRKEQGSKPVICFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNVP 611
Query: 313 ETLEVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A QN + G + + T+L DS +TH FL+ S +G V +
Sbjct: 612 AP-KARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFTSNHGMEVIS 670
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS-LGAI 428
+ + G + S+ C + + F LL D++LG +WL G I
Sbjct: 671 LERPLLVNTPGNQVFSTQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSCHRGVI 730
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI-NQLLLQE 471
K+T+ + G+TV + S P +HG I NQ+ LQE
Sbjct: 731 DCANRKVTLTSS-NGETVSF--FMSSP---KSHGVILNQVALQE 768
>gi|32487926|emb|CAE05274.1| OSJNBb0014D23.8 [Oryza sativa Japonica Group]
Length = 1545
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG 380
AL+G + RL+G ++ V +L+DS S+H F+++SL++Q + Q +V+
Sbjct: 21 ALSGTESPISFRLRGWVQGVEVLMLVDSGSSHSFIDNSLSQQ----LQGVQQLPKSVSVK 76
Query: 381 GVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
G HV F +F LP+ D++LG +WL LG + D++ F
Sbjct: 77 G---------HV--------FQSEFKFLPLGTYDVILGMDWLMQLGPMNVDWTAKWRMFQ 119
Query: 441 WKGQTVQLTG 450
G+ V+L G
Sbjct: 120 KAGKRVKLLG 129
>gi|21743214|emb|CAD40069.1| OSJNBa0085C10.22 [Oryza sativa Japonica Group]
Length = 1639
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 41/250 (16%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQL 291
GGSS P P F V Q R A+G LCFNC F+PGH +C P
Sbjct: 501 GGSSSLQQQQPRSAPRPQF----VPGQGHRDAQGQQRLCFNC---FEPGHFADKCPKP-- 551
Query: 292 LLLDADIEDKDEQAEALEELPET----LEVSLKALTGATPQNTMR----LKGNLKKHGV- 342
+ +Q +A P + +V+ + T ++ + + G H +
Sbjct: 552 ---------RRQQGQAP---PRSNNGGKDVARGRVNHVTAEDVLTTPDVIVGTFLFHSIP 599
Query: 343 -TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
TIL DS ++H F++ + V + GG +++ VP+ QG F
Sbjct: 600 ATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGDMTAKYYSPAVPIEIQGIPF 659
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANH 461
D LL D++LG WL ++ D ++ T+ ++G + + PP
Sbjct: 660 PSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVFFF--APPTPVGS 715
Query: 462 GEINQLLLQE 471
E++Q+ L E
Sbjct: 716 SELHQIGLSE 725
>gi|147867197|emb|CAN82051.1| hypothetical protein VITISV_042770 [Vitis vinifera]
Length = 429
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 412 GCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYD 452
G DIVLG +WL LG+++ D+ +LTM+F W+ QT +L G D
Sbjct: 148 GLDIVLGIQWLELLGSVVCDWRELTMEFMWENQTKKLVGID 188
>gi|38567683|emb|CAE75973.1| B1160F02.4 [Oryza sativa Japonica Group]
Length = 1618
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+ A
Sbjct: 618 PPTPAVQP-------GQGRRDVQGQQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRSN 667
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 668 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLIHSIPATILFDSRASHSFISVPF 721
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ Q F D LL D++LG
Sbjct: 722 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQRIPFPSDLILLDTKNLDVILGM 781
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 782 NWLAQFQGVV-DCARRTVTL-YRGPKQPVVFF--APPTSVGSSELHQIGLSE 829
>gi|62733376|gb|AAX95493.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734610|gb|AAX96719.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550245|gb|ABA93042.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1497
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 29/180 (16%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET--L 315
Q + A+G LCFNC F+PGH +C P + +Q +A P
Sbjct: 540 QGRKDAQGQQRLCFNC---FEPGHFVDKCPKP-----------RRQQGQAPPR-PNNGGK 584
Query: 316 EVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+V + T ++ + + G H + TIL DS ++H F++ + V
Sbjct: 585 DVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFMGRNQLGVER 644
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ GGV+++ VP+ QG F LD LL + D++LG WL ++
Sbjct: 645 LRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPLDLILLDTNNLDVILGMNWLAQFQGVV 704
>gi|19551090|gb|AAL91595.1|AC099400_1 Putative polyprotein [Oryza sativa Japonica Group]
gi|110288515|gb|ABG65884.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 262 AEQTERRAKGLCFNCDEQFKPGHR------CKAPQLLL--LDADIEDKDEQAEALE--EL 311
A + +RRA GLC+ C E++ P H+ A Q LL L ++I E E E +
Sbjct: 763 ALKAQRRAHGLCYICAEKWSPTHKYANTVQLHAVQELLTTLGSEILYDQEFTEECEGSDS 822
Query: 312 PETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK 361
+ +S++++ G+ MRL G ++ V IL+DS ST FL+S +A+
Sbjct: 823 QGLMAISVQSMHGSETMGCMRLLGFIQGREVLILVDSGSTAGFLSSQVAQ 872
>gi|77554515|gb|ABA97311.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 28/210 (13%)
Query: 272 LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTM 331
LCFNC F+PGH D + + +Q +A P + + G T
Sbjct: 338 LCFNC---FEPGH--------FADKCPKSRRQQGQAP---PCSNNGGKDVIRGRVNHVTA 383
Query: 332 R--------LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+ G H + TIL DS ++H F++ + V + GG
Sbjct: 384 EDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGG 443
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
V+++ VP+ QG F D LL D++LG WL ++ D ++ T+ +
Sbjct: 444 VMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-Y 501
Query: 442 KGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+G + + PP + E++Q+ L E
Sbjct: 502 RGPEQPVVFF--APPTSVSSSELHQIGLSE 529
>gi|18425257|gb|AAL69435.1|AC098565_17 Putative polyprotein [Oryza sativa]
gi|22725905|gb|AAN04915.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31430208|gb|AAP52154.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R G LCFN F+PGH +C P+ A
Sbjct: 243 PPTPAVQP-------GQGRRDVHGQQRLCFN---YFEPGHFADKCPKPRRQQGQAPPRPN 292
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + T + G H + TIL DS ++H F++
Sbjct: 293 NGGKDVIRGRVNHVTAEDMLTTPGV------IVGTFLIHSIPATILFDSGASHSFISVPF 346
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 347 VGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGILFPSDLILLDTKNLDVILGM 406
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+WL ++ D ++ T+ ++G + + PP A+ E++Q+ L E
Sbjct: 407 KWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSASSSELHQIGLSE 454
>gi|34015354|gb|AAQ56543.1| putative gag-protein [Oryza sativa Japonica Group]
Length = 835
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 28/210 (13%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET-LEVSLKALTGATP 327
LCFN F+PGH +C P+ +Q +A L +V+ + T
Sbjct: 590 LCFN---SFEPGHFADKCPKPRC-----------QQGQAPPRLNNGGKDVTRSRVNHVTA 635
Query: 328 QNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
++ + + G H + TIL DS ++H F+ + V + GG
Sbjct: 636 EDVLTTPDIIVGTFLIHSIPATILFDSGASHSFIYVPFVGRNQLGVERIRNPLLITTPGG 695
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441
V+++ VP+ QG F D LL D++LG WL ++ D ++ T+ +
Sbjct: 696 VMTAKYYSPTVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-Y 753
Query: 442 KGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+G + + PP A ++QL L E
Sbjct: 754 RGPDQPVVFF--APPTSAGSSVLHQLGLPE 781
>gi|34015085|gb|AAQ56283.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1234
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 32/237 (13%)
Query: 247 GPPPPGLP-PFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKD 302
GP P LP P + + + + LCFNC F+PGH +C P +
Sbjct: 97 GPVRPVLPAPVVQPGQGRRDVQGQQRLCFNC---FEPGHFADKCPKP-----------RR 142
Query: 303 EQAEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIF 354
+Q +A P +V + T ++ + + G H + TIL DS ++H F
Sbjct: 143 QQGQAPPR-PNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFFIHSIPATILFDSGASHSF 201
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 202 ISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIEIQGIPFPSDLILLDTKNLD 261
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++LG WL + D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 262 VILGMNWLAQFRVV--DCARRTVTL-YRGPEQPVVFF--APPTTVGSSELHQIGLSE 313
>gi|307107374|gb|EFN55617.1| hypothetical protein CHLNCDRAFT_52243 [Chlorella variabilis]
Length = 199
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 36/146 (24%)
Query: 88 ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALV 147
ENP + I E + L + + ++ A HL G A+ WY+ E MTW +FK+AL+
Sbjct: 14 ENPETFIRTVESAKGLYSWSDAQAMAFAGLHLKGKALDWYNIQEP----MTWLRFKKALI 69
Query: 148 TQFG--------------------TFEDGDAVGTQ-------NLPESFFISCFLSGLRED 180
+FG + DA+ T NL +S F+SGLRED
Sbjct: 70 GRFGLEPSRMLAALTKRMQGEKESVRDYADALCTLVRHSQDPNL-QSTLRHFFMSGLRED 128
Query: 181 IKIGVQMLKPASLLQTFELARFQEEY 206
++ V+ +P +TFE A + EY
Sbjct: 129 VQSFVKTRRP----ETFEAAVAEGEY 150
>gi|90265093|emb|CAH67706.1| H0512B01.1 [Oryza sativa Indica Group]
Length = 1454
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 30/223 (13%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE----QAEALE 309
V Q R+ +G +CFNC + PGH +C P+ + +A + + +A
Sbjct: 304 VQNQPVRKDQGSKPVICFNCGD---PGHYADKCPKPRRVK-NAPVPNNSNVPAPKARVNH 359
Query: 310 ELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + G P N++ T+L DS +TH FL+ S A ++G V +
Sbjct: 360 VAAAEAQNAPDVVLGTFPVNSI---------PATVLFDSGATHSFLSKSFASKHGMEVVS 410
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + G S+ C V + + F LL D++LG +WL R G I
Sbjct: 411 FGRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVI 470
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+++ + G+TV P + + Q+ LQE
Sbjct: 471 DCADRKVSLTNS-NGETVSFFASSPKSPGVV----LTQVALQE 508
>gi|255565238|ref|XP_002523611.1| conserved hypothetical protein [Ricinus communis]
gi|223537173|gb|EEF38806.1| conserved hypothetical protein [Ricinus communis]
Length = 81
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVS 210
+ +SCFLSGL+++IKI V+ML P +L Q + LAR Q+ Y VS
Sbjct: 18 YSLSCFLSGLKDEIKIPVKMLNPNNLQQAYALARMQDSYLNVS 60
>gi|53981184|gb|AAV24824.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1661
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 28/232 (12%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A G LCFN F+PGH +C P+ A
Sbjct: 496 PPTPVVQPV-------QGRRDASGPQRLCFNY---FEPGHFADKCPKPRRQQGQAPPRSN 545
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL 359
+ + + + LT TP + G H + TIL DS ++H F++
Sbjct: 546 NGGKDVIRGRVNHVTAE-DVLT--TPDVIV---GTFLVHSIPATILFDSGASHSFISVPF 599
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+ V + GGV+++ VP+ QG F D LL D++LG
Sbjct: 600 VGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGM 659
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 660 NWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSSELHQVGLSE 707
>gi|77555610|gb|ABA98406.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1611
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 26/214 (12%)
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNC 276
P N+ S Q + PPP + P + +V+ Q+E+ KG CFNC
Sbjct: 407 PSNFNNDYNGGSHNNSKQHNHNSTPPPLMAPAQSDPPAVSAQSEQPKKGAVGKPGHCFNC 466
Query: 277 DEQFKPGHRC-KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKG 335
K GH K P+L I + QA A E + + + + G P N+
Sbjct: 467 G---KHGHFAGKCPKL----NRIGPRFIQARANHVSAEEAQAAPEVVLGTFPVNS----- 514
Query: 336 NLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVN 395
+ T+L DS ++H F++ A +G V G + +S C V +
Sbjct: 515 ----YPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTSHYCPSVTIE 570
Query: 396 SQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ F + LL D++LG +WL R+ G I
Sbjct: 571 IKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI 604
>gi|113205256|gb|AAT38685.2| hypothetical protein SDM1_32t00005 [Solanum demissum]
Length = 578
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 78 IRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNM 137
+ LD L +G NP IFR E+Y LE D + L +LDG+A+ W+ W+ +
Sbjct: 4 VGLDRLTGTG-NPDDWIFRAERYFAYLGFLENDWIPLPFLYLDGEALDWFRWMYRNKQFW 62
Query: 138 TWAQFKRALVTQF 150
W FK L F
Sbjct: 63 DWKHFKEKLSLCF 75
>gi|62733023|gb|AAX95140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549634|gb|ABA92431.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1313
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 37/234 (15%)
Query: 222 RP-SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------ 272
RP P N+ S Q + PPP + P + +V+ Q+E+ KG
Sbjct: 192 RPYHPSNFNNDYNGGSHNNSKQHNHNSTPPPLMAPAQSDPPAVSAQSEQPKKGAVGKPGP 251
Query: 273 CFNCDEQFKPGHRC-----KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
CFNC + +C P+ + QA A E + + K + G P
Sbjct: 252 CFNCGKHDHFAGKCPKLNRTGPRFI-----------QARANHVSAEEAQAAPKVVLGTFP 300
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N+ + T+L DS ++H F++ A+ +G V G + ++
Sbjct: 301 VNS---------YPATVLFDSGASHSFISKRFARTHGLSVVELKIPMQVHTPGNDMRTAH 351
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
C V + + F + LL D++LG +WL R+ G I D + T+ T
Sbjct: 352 YCPSVTIEIKRSPFLSNLVLLESKDLDVILGMDWLTRNKGVI--DCASRTITLT 403
>gi|255569762|ref|XP_002525845.1| conserved hypothetical protein [Ricinus communis]
gi|223534850|gb|EEF36539.1| conserved hypothetical protein [Ricinus communis]
Length = 275
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 43/173 (24%)
Query: 126 WYH-WLEQTMGNMTWAQFKRALVTQFGTFEDGDAVGTQN--------------------- 163
WY W QT W F + L +FG D V N
Sbjct: 109 WYQRWRVQT-KEKKWEVFAKELCRRFGKVIVSDIVEESNRIQQVGSVINYQERFEELRSL 167
Query: 164 ------LP-ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEY--AAVSNRRI 214
+P ES+F+S F+SGL E+I+ V++LK A+L Q +E A+ E+ A +
Sbjct: 168 MLKYNPMPDESYFMSSFVSGLNEEIRSMVKLLKLATLSQAYERAKLYEKSIEAMFKRHKF 227
Query: 215 PPRPSMSRP--SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQT 265
P+ + +P S NS+PT PS L P P P RL+ QT
Sbjct: 228 LPKTNYQQPCKSNFTKNSTPT---------PSFLYRPTPRPKPQNRLNFKYQT 271
>gi|108711739|gb|ABF99534.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1761
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 685 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTA 741
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 742 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 795
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 796 ITTPRGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 854
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP E++Q+ L E
Sbjct: 855 TVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 887
>gi|308044377|ref|NP_001183468.1| uncharacterized protein LOC100501900 [Zea mays]
gi|238011738|gb|ACR36904.1| unknown [Zea mays]
Length = 379
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 44/210 (20%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+L F G+NP I +CE Y + + + + HL W+ +++ +
Sbjct: 173 KLPFPAFEGDNPRLWISQCESYFEMYQVDPAVWIRVISMHLSPTVACWFQAIQRRYVELR 232
Query: 139 WAQFKRAL----------------------------VTQFGTFEDGDAVGTQNLPESFFI 170
W F + L +T+F T D + +F
Sbjct: 233 WPLFCKLLMDRFGRDQHQALLRQLFRIRQTGSVEEYITRFSTLMDQLSAYEAMTDPLYFT 292
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNS 230
+ F+ GLRED++ V + +P L LA QEE + R+ PR
Sbjct: 293 TRFVEGLREDVRAVVMVQRPVDLDTACTLALLQEEVSEPVRRKEWPR------------G 340
Query: 231 SPTITKTGGSSQPSLLGPPPPGLPPFRRLS 260
PT + G SS P+ L LP RR +
Sbjct: 341 GPTGSAAGRSSSPAPLA----SLPRSRRWA 366
>gi|125598879|gb|EAZ38455.1| hypothetical protein OsJ_22837 [Oryza sativa Japonica Group]
Length = 278
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 75 PRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +L+F G ++P + CEQ+ R + D + LA HL GDA WY EQ
Sbjct: 140 PRFYKLEFPKYDGKDDPLNWFNHCEQFFRGQKTPDGDRVWLATYHLTGDAQEWYFHYEQH 199
Query: 134 MGNMTWAQFKRALVTQFG 151
G W FK QFG
Sbjct: 200 HGPPDWYAFKELCHAQFG 217
>gi|125556993|gb|EAZ02529.1| hypothetical protein OsI_24636 [Oryza sativa Indica Group]
Length = 278
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 75 PRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR +L+F G ++P + CEQ+ R + D + LA HL GDA WY EQ
Sbjct: 140 PRFYKLEFPKYDGKDDPLNWFNHCEQFFRGQKTPDGDRVWLATYHLTGDAQEWYFHYEQH 199
Query: 134 MGNMTWAQFKRALVTQFG 151
G W FK QFG
Sbjct: 200 HGPPDWYAFKELCHAQFG 217
>gi|38345526|emb|CAD41296.2| OSJNBa0020J04.1 [Oryza sativa Japonica Group]
Length = 1763
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 36/236 (15%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P+ +
Sbjct: 669 PPTPAVQP-------GQGRRDVQGQQRLCFNC---FEPGHFADKCPKPR----------R 708
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFL 355
+ + +V + T ++ + + G H + TIL DS ++H F+
Sbjct: 709 QQGQPPPRPNNDGKDVIWGRVNHVTAEDVLTTPNVIVGTFLIHSIPTTILFDSGASHSFI 768
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDI 415
+ + V + GV+++ VP+ QG F D LL D+
Sbjct: 769 SVPFVGRNQLGVERLRNSLLITTPRGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDV 828
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 829 ILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVGSSELHQIGLSE 880
>gi|40786567|gb|AAR89842.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 21/216 (9%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEV 317
Q R A+G LCFNC F+PGH +C P+ A + + + +
Sbjct: 685 QGRRDAQGPQRLCFNC---FEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTA 741
Query: 318 SLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
LT TP + G H + TIL DS ++H F++ + V +
Sbjct: 742 E-DVLT--TPDVIV---GTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLL 795
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
GV+++ VP+ QG F D LL D++LG WL ++ D ++
Sbjct: 796 ITTPRGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DCARR 854
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
T+ ++G + + PP E++Q+ L E
Sbjct: 855 TVTL-YRGPEQPVVFF--APPTSVRSSELHQIELSE 887
>gi|77556423|gb|ABA99219.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2360
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 298 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV--------KVVSAQSNSAVPAS- 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 465
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 466 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 500
>gi|242086625|ref|XP_002439145.1| hypothetical protein SORBIDRAFT_09g001307 [Sorghum bicolor]
gi|241944430|gb|EES17575.1| hypothetical protein SORBIDRAFT_09g001307 [Sorghum bicolor]
Length = 397
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 110/310 (35%), Gaps = 65/310 (20%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
P+ +++F G +P + + + EQ+ + +A HL DA WY+ LE+
Sbjct: 124 PKFHKIEFTTYDGSVDPLNWLTQFEQFFWAQLTSASQRTWMASYHLTRDAQTWYYALEED 183
Query: 134 MGNMTWAQFK------------------------RALVTQFGTFEDGDAVGTQNLPESFF 169
G W +FK ++V +F + TQ++
Sbjct: 184 EGQPPWDRFKDLCRLRFGPPIRGTRLAELGQLPFHSMVEEFAGYFQAVLAHTQDISTRQK 243
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE----YAAVSNRRIPPRPSMSRPSP 225
F+ GL I + V+M P+ L L R Y A ++R RP +S
Sbjct: 244 AELFVGGLPNHIGVDVEMHDPSDLQTAMYLGRTSSRGAHAYCADTDRHRYTRPHLSS--- 300
Query: 226 PLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHR 285
T G++Q P P L RR+S + D+ F
Sbjct: 301 ---------LDTDGNAQ----APSPGTLLQLRRVSSD-----------YIDDDLFTATED 336
Query: 286 CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTIL 345
DA +E + + L VS+ AL G +TM L + + L
Sbjct: 337 AA-------DATVESPMAPPDGVAA--RALVVSVYALAGIHTYHTMLLAITINGECLLAL 387
Query: 346 IDSSSTHIFL 355
+D+ STH FL
Sbjct: 388 LDTGSTHTFL 397
>gi|242075268|ref|XP_002447570.1| hypothetical protein SORBIDRAFT_06g004067 [Sorghum bicolor]
gi|241938753|gb|EES11898.1| hypothetical protein SORBIDRAFT_06g004067 [Sorghum bicolor]
Length = 908
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
ET++ L+ + G N++ TIL DS ++H F++ + + + P+
Sbjct: 253 ETVQEGLEIMMGTFSINSI---------PATILFDSGASHTFISQAFVRDHSIPLVAMIT 303
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDF 432
+ + GG I S C ++ + F + ++ SG D++LG +W++ +
Sbjct: 304 HMLVNSPGGTIPVSYCCPSASLSLRRVDFPISPMVMRTSGIDMILGLDWMKQYDTDIKCK 363
Query: 433 SKLTMQFTWKGQTVQL 448
K+ T KG+ + +
Sbjct: 364 EKIVALTTPKGERISV 379
>gi|224056913|ref|XP_002299086.1| predicted protein [Populus trichocarpa]
gi|222846344|gb|EEE83891.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELAR 201
L ES+++S F+SGL++DIK+ +++LKPA +L FE AR
Sbjct: 94 LTESYYVSSFISGLKDDIKLMLKILKPAKVLMAFEQAR 131
>gi|50878348|gb|AAT85123.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1495
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 28/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGH-RCKA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 307 NNSKQRNHNSTPPPLMAPAQSDPPAVSAQSEQPKKGAVGKPGPCFNCG---KHGHFASKC 363
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L + QA A E + + + + G P N+ + T+L DS
Sbjct: 364 PKL----NRTRPRFIQARANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFDS 410
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A+ +G V G + ++ C V + + F + LL
Sbjct: 411 GASHSFISKRFARTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLILL 470
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
D++LG WL R+ G I D + T+ T
Sbjct: 471 ESKDLDVILGMNWLTRNKGVI--DCASRTITLT 501
>gi|77555314|gb|ABA98110.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1226
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 26/209 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + K+ A P + + + A
Sbjct: 316 GVCFNCGD---PGHYADKCPKPRRV--------KNAPAPNNSNAPAP-KARVNHVAAAEA 363
Query: 328 QNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
QN + G + + ++L DS +TH FL+ S A +G V + + + G +
Sbjct: 364 QNAPDVVLGTFPVNSIPASVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTLGNQVF 423
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKG 443
S+ C + + F LL D++LG +WL R G I K+T+ + G
Sbjct: 424 STQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NG 482
Query: 444 QTVQLTGYDSLPPALANHGEI-NQLLLQE 471
+TV + S P G I NQ+ LQE
Sbjct: 483 ETVSF--FVSSP---KYRGVILNQVALQE 506
>gi|108862475|gb|ABA97082.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 637
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 21/177 (11%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
CFNC + +C P+ + QA E + +L+ + G P N++
Sbjct: 390 CFNCGKHGHFADKCPKPR------RAGTRFVQACVNHASAEEAQAALEVVLGMIPVNSI- 442
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC---PVTTTTQFQVTVADGGVISSSGKC 389
TIL+DS +TH F++ + +G ++T +F +S +
Sbjct: 443 --------PATILLDSGATHSFISKKFVRVHGLRKEELSTPMRFHTPWNSSTSVSYN--- 491
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
V + Q QF + LL D++LG +WL I+ +++ KG+T+
Sbjct: 492 PSVVIEIQISQFLANLILLESKDLDVILGKDWLTKFKGIIDCANRMVTLVNEKGETI 548
>gi|242081169|ref|XP_002445353.1| hypothetical protein SORBIDRAFT_07g011900 [Sorghum bicolor]
gi|241941703|gb|EES14848.1| hypothetical protein SORBIDRAFT_07g011900 [Sorghum bicolor]
Length = 1488
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 23/171 (13%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEA----LEELPETLEVSLKALTGATPQ 328
CFNC + C P+ +A + +EE+PE V+
Sbjct: 268 CFNCKQVGHWARDCPYPKR---NAAAGGNNRMGRVHYTTVEEIPEGEAVTAGMFL----- 319
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTT--TTQFQVTVADGGVISSS 386
+ +H +L DS ++H F++ + A ++G V + +F ++ A G I+++
Sbjct: 320 --------VNQHPTVVLFDSGASHSFMSQTFASKHGQHVIDLDSGKFCISAA-GNQIATN 370
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTM 437
V + +G + + +LP G D++LG +W+ G ++ +++ M
Sbjct: 371 QVVRDVQIAIEGRNYSANLVILPGLGIDVILGMKWMSDHGVLIDTSTRVIM 421
>gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1715
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 54/247 (21%)
Query: 246 LGPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADI 298
L P P +P +Q +R +G +CFNC + PGH +C P+ +
Sbjct: 529 LAPRPVAVP------AQQQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV------ 573
Query: 299 EDKDEQAEALEELPETLEVSLKALTGATPQNT------MRLKGNLKKHGVTILIDSSSTH 352
K A+ +P T + + + A Q+ M L ++ T+L DS +TH
Sbjct: 574 --KVVPAQNNSAVP-TSKARVNHVAAAEAQDAPDVILGMFLVNSVP---ATVLFDSGATH 627
Query: 353 IFLNSSLAKQYG-------CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
FL+ S A +G CP+ +T + S + V + QG F +
Sbjct: 628 SFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-------SLQRSPSVRIEIQGVPFLANL 680
Query: 406 FLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI 464
LL D++LG +WL R G I K+T+ ++ G+ V + S + +
Sbjct: 681 ILLESKDLDVILGMDWLARHKGVIDCANRKVTLN-SYDGRVVTVHALSS----ESLRSRL 735
Query: 465 NQLLLQE 471
NQ+ L+E
Sbjct: 736 NQITLEE 742
>gi|20143556|gb|AAM12313.1|AC091680_14 putative polyprotein [Oryza sativa Japonica Group]
Length = 1453
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 40/238 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P +
Sbjct: 302 PPAPVVQP-------GQGRREVQGQQRLCFNC---FEPGHFADKCPKP-----------R 340
Query: 302 DEQAEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHI 353
+Q +A P +V + T ++ + + G H + TIL DS ++H
Sbjct: 341 RQQGQAPPR-PNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHS 399
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F++ + V + GV+++ VP+ QG F D LL
Sbjct: 400 FISVPFVGRNQLGVERLRNPLLITTPRGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNL 459
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 460 DVILGMNWLAEFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSIGSSELHQIGLSE 513
>gi|147767794|emb|CAN71655.1| hypothetical protein VITISV_016552 [Vitis vinifera]
Length = 496
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 72/190 (37%)
Query: 184 GVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQP 243
++M KP +L + LAR ++E ++ + +SRP P ++
Sbjct: 210 AIRMFKPKTLKEATSLARMKDE-------QLQRQIRISRPPLP--------------TRT 248
Query: 244 SLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDE 303
L P P P +RL+ E +RRA+ LCFNC+++F
Sbjct: 249 LLALPTPTKASPVKRLTWDEMQQRRAQRLCFNCNDKFT---------------------- 286
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQY 363
+K + H + + ID STH FLN+ + +
Sbjct: 287 -----------------------------IKAQIGHHEIEVFIDRRSTHNFLNAKMVEIL 317
Query: 364 GCPVTTTTQF 373
V +T +F
Sbjct: 318 QLSVISTDRF 327
>gi|77554975|gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2174
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 999 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQNNSAVPAS- 1046
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL++S A +G V +
Sbjct: 1047 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSTSFAGNHGMEVEDLRR 1106
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 1107 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCA 1166
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 1167 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 1201
>gi|110288769|gb|ABG65971.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 54/247 (21%)
Query: 246 LGPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADI 298
L P P +P +Q +R +G +CFNC + PGH +C P+ +
Sbjct: 289 LAPRPVAVP------AQQQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV------ 333
Query: 299 EDKDEQAEALEELPETLEVSLKALTGATPQNT------MRLKGNLKKHGVTILIDSSSTH 352
K A+ +P T + + + A Q+ M L ++ T+L DS +TH
Sbjct: 334 --KVVPAQNNSAVP-TSKARVNHVAAAEAQDAPDVILGMFLVNSVP---ATVLFDSGATH 387
Query: 353 IFLNSSLAKQYG-------CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
FL+ S A +G CP+ +T + S + V + QG F +
Sbjct: 388 SFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-------SLQRSPSVRIEIQGVPFLANL 440
Query: 406 FLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEI 464
LL D++LG +WL R G I K+T+ ++ G+ V + S + +
Sbjct: 441 ILLESKDLDVILGMDWLARHKGVIDCANRKVTLN-SYDGRVVTVHALSS----ESLRSRL 495
Query: 465 NQLLLQE 471
NQ+ L+E
Sbjct: 496 NQITLEE 502
>gi|54291789|gb|AAV32158.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1131
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHL 403
+L DS +TH FL+ A +G V + + + G +SS+ C+ V + + F
Sbjct: 358 VLFDSGATHSFLSKIFASDHGMEVISLGRPLLVNTLGNQVSSTQYCTSVTIEIEEIPFLS 417
Query: 404 DFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHG 462
L D++LG +WL R G I K+T+ + GQTV P L
Sbjct: 418 SLISLESKDLDVILGMDWLTRHRGVIDCANRKVTLTSS-NGQTVSFFVSSPKPHGLT--- 473
Query: 463 EINQLLLQE 471
+NQ+ LQE
Sbjct: 474 -LNQVALQE 481
>gi|54291802|gb|AAV32171.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1310
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 25/207 (12%)
Query: 272 LCFNCDEQFKPGHRC-KAPQLLLLDADIEDKDEQAEA----LEELPETLEVSLKALTGAT 326
+CFNC + PGH K P+ + + A A + + + + + G
Sbjct: 260 VCFNCGD---PGHYADKYPKPRRMKNAPAPNNSNAPAPKARVNHVAAEAQNAPDVVLGTF 316
Query: 327 PQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
P N++ ++L DS +TH FL+ S A +G + + + G + S+
Sbjct: 317 PVNSI---------PASVLFDSGATHSFLSKSFASNHGMEFISLGRPLLVNTPGNQVFST 367
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQT 445
C + + F LL D++LG +WL R G I K+T+ + G+T
Sbjct: 368 QYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVINCANRKVTLTSS-NGET 426
Query: 446 VQLTGYDSLPPALANHGEI-NQLLLQE 471
V + S P HG I NQ+ LQE
Sbjct: 427 VSF--FVSSP---KYHGVILNQVALQE 448
>gi|22758322|gb|AAN05526.1| polyprotein [Oryza sativa Japonica Group]
Length = 1471
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 17/177 (9%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ + QA E + + + + G P N+
Sbjct: 516 GSCFNCGELGHFADKCPKPR------RAGPRFVQARVNHASAEEAQAAPEVVLGTFPVNS 569
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ YG + G +S
Sbjct: 570 V---------PATVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTPGNSSTSVSYSP 620
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F +F LL D++LG +WL ++ D++ T+ T KG+TV
Sbjct: 621 SVLIEIQRSPFLANFILLESKDLDVILGMDWLTKFKGVI-DYANHTVTLTNEKGETV 676
>gi|110289210|gb|ABG66123.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1291
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 336 GSCFNCGELGHFADKCPKPRRAGPRFVQARVNHAS--AEEAQAAPEVV-------LGTFP 386
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 387 VNSV---------PATVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTPGNSSTSVS 437
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F +F LL D++LG +WL ++ D++ T+ T KG+TV
Sbjct: 438 YSPSVLIEIQRSPFLANFILLESKDLDVILGMDWLTKFKGVI-DYANHTVTLTNEKGETV 496
>gi|110289465|gb|ABG66211.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1666
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 40/238 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R +G LCFNC F+PGH +C P +
Sbjct: 497 PPAPVVQP-------GQGRREVQGQQRLCFNC---FEPGHFADKCPKP-----------R 535
Query: 302 DEQAEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHI 353
+Q +A P +V + T ++ + + G H + TIL DS ++H
Sbjct: 536 RQQGQAPPR-PNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHS 594
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F++ + V + GV+++ VP+ QG F D LL
Sbjct: 595 FISVPFVGRNQLGVERLRNPLLITTPRGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNL 654
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++LG WL ++ D ++ T+ ++G + + PP E++Q+ L E
Sbjct: 655 DVILGMNWLAEFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSIGSSELHQIGLSE 708
>gi|108707286|gb|ABF95081.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1329
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 26/214 (12%)
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNC 276
P N+ S Q + PPP + P + +V+ Q+E+ KG CFNC
Sbjct: 294 PSNFNNDYNGGSHNNSKQHNHNSTPPPLMAPAQSDPPAVSAQSEQPKKGAVGKPGPCFNC 353
Query: 277 DEQFKPGHRC-KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKG 335
K GH K P+L + QA A E + + + + G P N+
Sbjct: 354 G---KHGHFAGKCPKL----NRTRPRFIQARANHVSAEEAQAAPEVVLGTFPVNS----- 401
Query: 336 NLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVN 395
+ T+L DS ++H F++ A +G V G + ++ C V +
Sbjct: 402 ----YPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRAAHYCPSVTIE 457
Query: 396 SQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ F + LL D+VLG +WL R+ G I
Sbjct: 458 IKRSPFLSNLILLESKDLDVVLGMDWLTRNKGVI 491
>gi|90265159|emb|CAH67785.1| H0201G08.12 [Oryza sativa Indica Group]
Length = 861
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 28/202 (13%)
Query: 249 PPPGLPPFRR--LSVAEQTERRAKGL------CFNCDEQFKPGHRC-KAPQLLLLDADIE 299
PPP + P + +V+ Q+E+ KG CFNC K GH K P+L
Sbjct: 67 PPPLMAPAQSDPPAVSAQSEQPKKGAVGKPGPCFNCG---KHGHFAGKCPKL----NRTG 119
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
+ QA A E + + K + G P N+ + T+L DS ++H F++
Sbjct: 120 PRFIQARANHVSAEEAQAAPKVVLGTFPVNS---------YPATVLFDSGASHSFISKRF 170
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
A +G V G + ++ C V + + F + LL D++LG
Sbjct: 171 AGTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLILLESKDLDVILGM 230
Query: 420 EWL-RSLGAILWDFSKLTMQFT 440
+WL R+ G I D + T+ T
Sbjct: 231 DWLTRNKGVI--DCASRTITLT 250
>gi|58531955|emb|CAE03064.2| OSJNBa0089E12.2 [Oryza sativa Japonica Group]
Length = 1764
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
TIL DS ++H F++ + V + GGV+++ VP+ QG F
Sbjct: 666 ATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF 725
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANH 461
D LL D++LG WL ++ D ++ T+ ++G + + PP
Sbjct: 726 PSDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRS 781
Query: 462 GEINQLLLQE 471
E++Q+ L E
Sbjct: 782 SELHQIGLSE 791
>gi|307135777|gb|ADN33669.1| ty3-gypsy retroelement transposase [Cucumis melo subsp. melo]
Length = 710
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
M++KG +K V +LID +TH F++ L P+ +T+ ++V + G I G C
Sbjct: 1 MKVKGKVKNEDVVVLIDCWATHNFISEKLVSDLNLPLKSTSSYKVILGLGVAIKGKGICG 60
Query: 391 HVPV 394
V V
Sbjct: 61 KVEV 64
>gi|22138474|gb|AAM93458.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430677|gb|AAP52558.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1406
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 231 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVPAS- 278
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 279 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 338
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 339 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 398
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 399 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 433
>gi|62732819|gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550206|gb|ABA93003.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1436
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++++ + + + + GG I+ S C VP+ + F
Sbjct: 377 VKVLFDSGASHSFISRKASQKHNLTLVGLRKPMIVHSPGGEITVSHACIDVPIRLRDVVF 436
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWK 442
+ +L D++LG +WL ++ G I K+T+ W+
Sbjct: 437 PSNLLVLIPQTLDVILGMDWLTKNRGVIDCRRRKVTLTTPWR 478
>gi|449524808|ref|XP_004169413.1| PREDICTED: uncharacterized protein LOC101228880 [Cucumis sativus]
Length = 1099
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQL 291
+RLS AE +R KGLCF CDE++ GH+CK L
Sbjct: 413 KRLSDAEFQAKREKGLCFKCDEKYYSGHKCKVEDL 447
>gi|55168164|gb|AAV44031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55733814|gb|AAV59321.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1505
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 36/217 (16%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGHRC--- 286
S Q + PPP + P + +V+ Q+E+ KG CFNC + +C
Sbjct: 296 NNSKQHNHNSTPPPLMAPAQSDPPAVSAQSEQPKKGAVGKPGHCFNCGKHGHFAGKCPKL 355
Query: 287 --KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTI 344
P+L+ QA A E + + + + G P N+ + T+
Sbjct: 356 NRTGPRLI-----------QARANHVSAEEAQAAPEVVLGTFPVNS---------YPATV 395
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD 404
L DS ++H F++ A +G V G + ++ C V + + F +
Sbjct: 396 LFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSN 455
Query: 405 FFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
LL D++LG +WL R+ G I D + T+ T
Sbjct: 456 LILLESKDLDVILGMDWLTRNKGVI--DCASRTITLT 490
>gi|38346260|emb|CAE02082.2| OSJNBa0074B10.10 [Oryza sativa Japonica Group]
Length = 720
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 23/186 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q+ +R +G +CFNC E PGH +C P+ ++ Q+ + P+
Sbjct: 247 QQSAKREQGSKPVVCFNCGE---PGHYADKCPKPR------RVKVVPTQSNSTAPAPKA- 296
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ +T A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 297 --RVNHVTAAEAQDAPDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 354
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 355 PLMVSTPSNQALSLQRSPSVRIEIQGIPFLANLILLESKDLDVILGMDWLARHKGVIDCA 414
Query: 432 FSKLTM 437
K+T+
Sbjct: 415 NRKVTL 420
>gi|32480101|emb|CAE01992.1| OSJNBb0033G08.8 [Oryza sativa Japonica Group]
Length = 368
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
E +SL AL G T++L+ + + I +DS S+H F+NS L + P T T
Sbjct: 210 EDFNLSLHALAGTCSSATVQLRALVGNQVILIFVDSGSSHSFVNSDLCAKLQLPTTATLP 269
Query: 373 FQVTVADGGVI 383
V VA+G +I
Sbjct: 270 ISVKVANGELI 280
>gi|90265088|emb|CAH67760.1| H0124E07.7 [Oryza sativa Indica Group]
Length = 1430
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 23/186 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 297 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 344
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+V + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 345 KVRVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 404
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 405 PLMVSTPSNQALSLHRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 464
Query: 432 FSKLTM 437
K+T+
Sbjct: 465 NRKITL 470
>gi|116310873|emb|CAH67814.1| OSIGBa0138H21-OSIGBa0138E01.5 [Oryza sativa Indica Group]
Length = 1777
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 23/210 (10%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDA 296
QP+ P P + P + A+ + E AK G CFNC E +C P+ + A
Sbjct: 578 QPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQA 637
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ AE + PE + G P N++ T+L DS +TH F++
Sbjct: 638 RVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFIS 679
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
+YG + G +S V + Q F + LL D++
Sbjct: 680 KKFVGRYGLRKEELSTPMRVHTPGNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVI 739
Query: 417 LGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
LG +WL ++ S+ KG+TV
Sbjct: 740 LGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|57834137|emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa Japonica Group]
Length = 1528
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 418 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 465
Query: 316 EVSLKALTGATPQNTMRLK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 466 KARVNHVAAAEAQDAPDMILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 525
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ G S + V + +G F + LL D++LG +WL R G I
Sbjct: 526 PLMVSTPGNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 585
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 586 NRKVTLTSN-DGRVVTVNALSS----ESLRSRLNQITLEE 620
>gi|90265087|emb|CAH67759.1| H0124E07.6 [Oryza sativa Indica Group]
Length = 368
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
E +SL AL G T++L+ + + I +DS S+H F+NS L + P T T
Sbjct: 210 EDFNLSLHALAGTCSSATVQLRALVGNQVILIFVDSGSSHSFVNSDLCAKLQLPTTATLP 269
Query: 373 FQVTVADGGVI 383
V VA+G +I
Sbjct: 270 ISVKVANGELI 280
>gi|108862750|gb|ABA98741.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1678
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 529 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQNNSAVPAS- 576
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 577 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 636
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 637 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 696
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 697 NRKVTLN-SYDGRVVTVHALSS----ESFRSRLNQITLEE 731
>gi|77555413|gb|ABA98209.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 911
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 131/360 (36%), Gaps = 65/360 (18%)
Query: 112 LSLAIGHLDGDAVPW---YHWLEQTMGNMTWAQF----------KRALVTQ---FGTFED 155
++ A L G A W Y T +TWA+F +R + Q F +
Sbjct: 25 VAFATHQLKGPASAWWDNYVVTRPTATEVTWAEFCQSFRKAQIRERIMAQQKREFCALQQ 84
Query: 156 GDAVGTQNLPESFFISCF-----LSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVS 210
G T+ L E ++CF +SG+ ED + V P QEE
Sbjct: 85 GTRTVTEYLHEFNRLACFAPEDLISGVYEDFEKLVDKAIP------------QEEQRNKL 132
Query: 211 NRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPS---LLGPPPPGLPPFRRLSVAEQTER 267
+R+ RP N G+ + L+ P LP +V+ Q ++
Sbjct: 133 DRKRKHRPYYPSNFNNDYNGGSHYRSEQGNDNSTPHPLMAPAQSELP-----AVSAQPKQ 187
Query: 268 ------RAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKA 321
R G FN + +C P+L + QA E + + +
Sbjct: 188 LKKESARKPGPYFNYGKYDHFAGKC--PKL----KRARPRFVQARVNHASAEEAQAAPEV 241
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+ G P N+ H T+L DS +++ F++ A +G V G
Sbjct: 242 MLGTFPVNS---------HPATVLFDSGASYSFISKKFAGTHGLSVVELKIPMRVHTPGD 292
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
++++ C + + + QF + LL D++LG +WL R G I D++ T+ T
Sbjct: 293 DMNTAHYCPSMSIEIKRSQFLSNLILLESKDLDVILGMDWLTRHKGVI--DYASRTITLT 350
>gi|38344420|emb|CAE02386.2| OSJNBb0080H08.12 [Oryza sativa Japonica Group]
Length = 1666
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V +Q +R +G +CFNC + PGH +C P+ + K A++ +P
Sbjct: 550 VQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVPV 598
Query: 314 TLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 599 S-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDL 657
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAIL 429
+ + S + V + +G F + LL D++LG +WL R G I
Sbjct: 658 RRPLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVID 717
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 718 CANRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 754
>gi|54287551|gb|AAV31295.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1374
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
CFNC + +C P+ + K+ A +P + + + A QN
Sbjct: 324 CFNCGDLGHYADKCPKPRRV--------KNVPAPNNSNVPAP-KARVNHVAAAEAQNAPD 374
Query: 333 LK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
+ G + + T+L DS +TH FL+ S A +G V + + + G S+ C
Sbjct: 375 VVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYC 434
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQL 448
+ + F LL D++LG +WL R G I K+T+ + G+TV
Sbjct: 435 PSATIGIEEDPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NGETVSF 493
Query: 449 TGYDSLPPALANHG-EINQLLLQE 471
+ S P + HG INQ+ LQ+
Sbjct: 494 --FVSSPKS---HGVTINQVALQD 512
>gi|113205190|gb|ABI34290.1| hypothetical protein SDM1_25t00002 [Solanum demissum]
Length = 530
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 78 IRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNM 137
+ LD + +G NP IFR E+Y LE D + L +LDG+A+ W+ W+ +
Sbjct: 4 VGLDRFIGTG-NPDDWIFRAERYFAYLGYLEIDWIPLHFLYLDGEALDWFRWMYRNKQFW 62
Query: 138 TWAQFKRAL 146
W FK +
Sbjct: 63 DWKHFKENI 71
>gi|19881742|gb|AAM01143.1|AC108884_25 Putative retroelement [Oryza sativa Japonica Group]
gi|21263216|gb|AAM44893.1|AC122144_16 Putative retroelement [Oryza sativa Japonica Group]
gi|31431896|gb|AAP53608.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1245
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 78/200 (39%), Gaps = 24/200 (12%)
Query: 259 LSVAEQTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPET 314
LS + E AK G CFNC E +C P+ + A + AE + PE
Sbjct: 145 LSAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEV 202
Query: 315 LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
+ G P N++ T+L DS +TH+F++ +G +
Sbjct: 203 V-------LGTFPVNSI---------PATVLFDSGATHLFISKKFVGMHGLRKEELSTPM 246
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
A G +S V + Q F + LL D++LG +WL ++ D +
Sbjct: 247 RVHAPGNSSTSVSFSPSVLIEIQRSPFLANLILLKSKDLDVILGMDWLTQFKGVI-DCAN 305
Query: 435 LTMQFT-WKGQTVQLTGYDS 453
T+ T KG+TV DS
Sbjct: 306 RTVTLTNEKGETVVYKSPDS 325
>gi|147765520|emb|CAN60437.1| hypothetical protein VITISV_035177 [Vitis vinifera]
Length = 818
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%)
Query: 362 QYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEW 421
Q P+ T + V + G + G C V + QG + D L + G D +LG +W
Sbjct: 247 QVMIPLDETEGYGVLLKIGVSVKGEGVCRGVQLLLQGVKIVEDVMPLDLGGSDFILGMQW 306
Query: 422 LRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
L +LG I ++ LTM F T+ L G
Sbjct: 307 LETLGKIKFNCKTLTMWFKVGESTMTLQG 335
>gi|77552307|gb|ABA95104.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1709
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 675 QQPAKREQGNKPVVCFNCGD---PGHYADKCLKPRRV--------KVVPAQNNSAVPAS- 722
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 723 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 782
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 783 PLMVSTPSNQALSLQRSPSVKIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 842
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 843 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 877
>gi|326430764|gb|EGD76334.1| hypothetical protein PTSG_11674 [Salpingoeca sp. ATCC 50818]
Length = 1260
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 84/224 (37%), Gaps = 48/224 (21%)
Query: 82 FLVLSGENPTSLIFRCEQYQRLAALLETD-VLSLAIGHLDGDAVPWYHWLEQTMGNMTWA 140
F +GE +F E + R + + D L LAI L G A+ WY L+ NM
Sbjct: 54 FSGATGERADDFLFCLETFVRYHRIDDDDQRLLLAISCLQGHALTWYRSLDPAPTNM--H 111
Query: 141 QFKRALVTQFGTFEDGDAVGTQ--------NLPESFF-----------------ISCFLS 175
+ + L F T ++ + Q N+ + F I F+
Sbjct: 112 ELQEQLRASFKTIDEQRQLRDQLRRLRQDGNVQDYVFKFRQLMVQIDDMSRLDRIEAFIH 171
Query: 176 GLREDIKIGVQMLKPASLLQTFELA-RFQEEY--AAVSNRRIPPRPSMSRPSPPLLNSSP 232
GLR + V P +L Q ++LA R+ Y A S RR P P+ PP +
Sbjct: 172 GLRPRTRQEVSFHGPDTLEQAYQLASRYDRNYTTANSSYRRGAP-PTQ----PPKFDDRA 226
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNC 276
+ +P RRL+ E+ E R +G CF C
Sbjct: 227 MDIDAIRAQRP------------LRRLTDQERDELRRRGACFRC 258
>gi|14018097|gb|AAK52160.1|AC084831_14 putative polyprotein [Oryza sativa Japonica Group]
gi|108709292|gb|ABF97087.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
TIL DS ++H F++ + V + GGV+++ VP+ QG F
Sbjct: 407 ATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF 466
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANH 461
D LL D++LG WL ++ + ++ Q V PP
Sbjct: 467 PSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTRYRGPEQPVVFFA----PPTSVGS 522
Query: 462 GEINQLLLQE 471
E++Q+ L E
Sbjct: 523 SELHQIGLSE 532
>gi|50878466|gb|AAT85240.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1472
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
CFNC + +C P+ + K+ A +P + + + A QN
Sbjct: 324 CFNCGDLGHYADKCPKPRRV--------KNVPAPNNSNVPAP-KARVNHVAAAEAQNAPD 374
Query: 333 LK-GNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
+ G + + T+L DS +TH FL+ S A +G V + + + G S+ C
Sbjct: 375 VVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYC 434
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQL 448
+ + F LL D++LG +WL R G I K+T+ + G+TV
Sbjct: 435 PSATIGIEEDPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS-NGETVSF 493
Query: 449 TGYDSLPPALANHG-EINQLLLQE 471
+ S P + HG INQ+ LQ+
Sbjct: 494 --FVSSPKS---HGVTINQVALQD 512
>gi|77550774|gb|ABA93571.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1383
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 13/171 (7%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + + Q+ + P+ + A
Sbjct: 311 GVCFNCGD---PGHYADKCPKPRRMKVVP------AQSNSTAPAPKARVNHVPAAEAQGA 361
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
+ + + T+L DS +TH FL+ S A +G V + + S
Sbjct: 362 PDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQ 421
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+C V + Q F + LL D++LG +WL R G I K+T+
Sbjct: 422 RCPSVKIEIQKVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTL 472
>gi|50300548|gb|AAT73689.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1516
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 28/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGHRC-KA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 307 NNSKQHNHNSTPPPLMAPAQSDPPAVSVQSEQPKKGAVGKPGPCFNCG---KHGHFAGKC 363
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L + QA A E + + + + G P N+ + T+L DS
Sbjct: 364 PKL----NRTRPRFIQARANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFDS 410
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A +G V G + ++ C V + + F + LL
Sbjct: 411 GASHSFISKRFAGMHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLILL 470
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
D++LG +WL R+ G I D + T+ T
Sbjct: 471 ESKDLDVILGMDWLTRNKGVI--DCASRTITLT 501
>gi|357498095|ref|XP_003619336.1| hypothetical protein MTR_6g046770 [Medicago truncatula]
gi|355494351|gb|AES75554.1| hypothetical protein MTR_6g046770 [Medicago truncatula]
Length = 246
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 321 ALTGATPQNTMRL-KGN--LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT-QFQVT 376
ALTG ++ RL +G + + +ID+ +TH F+ G ++ + V
Sbjct: 105 ALTGTQTESEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSTLGLDLSDMNGEMVVE 164
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
G +++S C P + G F +D LP+SG D++LG WL + FSK
Sbjct: 165 TPAKGSVTTSLVCLRCPFSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINCFSK 222
>gi|288819264|gb|ADC55379.1| gag-pol polyprotein [Oryza brachyantha]
Length = 1393
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 25/205 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+C+NC + PGH +C P+ + QA E + + + + G P
Sbjct: 346 GVCYNCGD---PGHFADKCPKPK------RSGQRFVQARVNHVTAEEAQAAPEVILGTFP 396
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ TIL DS +TH F++ G G + S
Sbjct: 397 VNSV---------PATILFDSGATHSFISRKFVGMLGLKREKLRDPMRVNTPGHSMFSDL 447
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
VP+ QG F + LL D++LG +WL ++ D +K T+ T + +
Sbjct: 448 YSPVVPIEIQGTPFLANLILLESKDLDVILGMDWLTKHQGVI-DCAKRTITLT--SEEGK 504
Query: 448 LTGYDSLPPALANHGEINQLLLQEK 472
+ Y SL ++ +NQ+ +E+
Sbjct: 505 VVTYQSL-ESVTTRTCLNQMEAEEQ 528
>gi|15217199|gb|AAK92543.1|AC051624_1 Putative retroelement [Oryza sativa Japonica Group]
gi|31431042|gb|AAP52880.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1773
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 25/211 (11%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDA 296
QP+ P P + P + A+ + E AK G CFNC E +C P+ + A
Sbjct: 578 QPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQA 637
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ AE + PE + G P N++ T+L DS +TH F++
Sbjct: 638 RVNHAS--AEEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFIS 679
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
+YG + G +S V + Q F + LL D++
Sbjct: 680 KKFVGRYGLRKEELSTPMRVHTPGNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVI 739
Query: 417 LGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
LG +WL ++ D + T+ T KG+TV
Sbjct: 740 LGMDWLTKFKGVI-DCANRTVTLTNEKGETV 769
>gi|77555395|gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1412
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 297 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQNNSAVPAS- 344
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 345 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 404
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 405 PLMVSTPSDQALSLQRSPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCA 464
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 465 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 499
>gi|18652528|gb|AAL77161.1|AC091732_12 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1731
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 563 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQTAPEVV-------LGTFP 613
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 614 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSVS 664
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 665 FSPSVLIEIQRLPFLANLILLESKDLDVILGMDWLTKFNGVI-DCANRTVTLTNEKGETV 723
Query: 447 QLTGYDSLPP 456
Y SL P
Sbjct: 724 V---YKSLAP 730
>gi|110289018|gb|ABB47435.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1755
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 587 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQTAPEVV-------LGTFP 637
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 638 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSVS 688
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 689 FSPSVLIEIQRLPFLANLILLESKDLDVILGMDWLTKFNGVI-DCANRTVTLTNEKGETV 747
Query: 447 QLTGYDSLPP 456
Y SL P
Sbjct: 748 V---YKSLAP 754
>gi|13129458|gb|AAK13116.1|AC080019_8 polyprotein [Oryza sativa Japonica Group]
Length = 2162
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 947 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQTAPEVV-------LGTFP 997
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 998 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSVS 1048
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 1049 FSPSVLIEIQRLPFLANLILLESKYLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 1107
Query: 447 QLTGYDSLPP 456
Y SL P
Sbjct: 1108 V---YKSLAP 1114
>gi|38344464|emb|CAE04935.2| OSJNBa0017P10.12 [Oryza sativa Japonica Group]
gi|38567639|emb|CAE75877.1| B1234D02.1 [Oryza sativa Japonica Group]
Length = 1742
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K AE +P +
Sbjct: 567 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAENNSAVPAS- 614
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V +L DS +TH FL+ S +G V +
Sbjct: 615 KARVNHVAAAEAQDAPDVILGTFLVNSVPAIVLFDSGATHSFLSMSFVGNHGMEVEDLRR 674
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 675 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 734
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALAN---HGEINQLLLQE 471
K+T+ ++ G+ V + PAL++ +NQ+ L+E
Sbjct: 735 NRKVTLN-SYDGRVVTV-------PALSSESLRSRLNQITLEE 769
>gi|21672038|gb|AAM74400.1|AC119149_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 1300
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 25/211 (11%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDA 296
QP+ P P + P + A+ + E AK G CFNC E +C P+ + A
Sbjct: 578 QPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQA 637
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ AE + PE + G P N++ T+L DS +TH F++
Sbjct: 638 RVNHAS--AEEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFIS 679
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
+YG + G +S V + Q F + LL D++
Sbjct: 680 KKFVGRYGLRKEELSTPMRVHTPGNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVI 739
Query: 417 LGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
LG +WL ++ D + T+ T KG+TV
Sbjct: 740 LGMDWLTKFKGVI-DCANRTVTLTNEKGETV 769
>gi|108862342|gb|ABA96234.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 34/223 (15%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 232 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRM--------KVVPAQNNSAVPAS- 279
Query: 316 EVSLKALTGATPQNT------MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + A Q+ M L ++ T+L DS +TH FL+ S A +G V
Sbjct: 280 KARVNHVAAAEAQDAPDVILGMFLVNSVP---ATVLFDSGATHSFLSMSFAGNHGMEVED 336
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + S + V + QG F + LL D++LG +WL R G I
Sbjct: 337 LRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVI 396
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 397 DCANKKVTLT-SYDGRVVTVHALSS----ESLRSRLNQITLEE 434
>gi|55733883|gb|AAV59390.1| hypothetical protein [Oryza sativa Japonica Group]
gi|57900672|gb|AAW57797.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1253
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCP-VTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
IL DS +TH F++ A +G V +V GG ++++ C V V QG
Sbjct: 287 AVILFDSGATHSFISKRFAGAHGFSLVKLKIPMRVHTPRGG-MTTTHYCPSVTVEIQGLI 345
Query: 401 FHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTV 446
F + LL D++LG +WL R G I D + T++ T KG+ V
Sbjct: 346 FPANLILLESKDLDVILGMDWLTRHKGVI--DCASRTIKLTNAKGEVV 391
>gi|38567947|emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa Japonica Group]
Length = 1779
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 34/236 (14%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIE 299
P P +P +Q +R +G +CFNC + PGH +C P+ +
Sbjct: 594 APRPVAVP------AQQQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV------- 637
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLN 356
K A+ +P + + + + A Q + G + V T+L DS +TH FL+
Sbjct: 638 -KVVPAQNNSAVPAS-KARVNHVAAAEAQGAPDVILGTFLVNSVPATVLFDSGATHSFLS 695
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
S A +G V + + S + V + QG F + LL D++
Sbjct: 696 MSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLKSKDLDVI 755
Query: 417 LGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
LG +WL R G I K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 756 LGMDWLARHKGVIDCANRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 806
>gi|116309193|emb|CAH66288.1| OSIGBa0161P06.5 [Oryza sativa Indica Group]
Length = 1471
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 29/213 (13%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDE 303
P PP P + E AK G CFNC E +C P+ + A +
Sbjct: 279 PRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS- 337
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQY 363
AE + PE + G P N++ T+L DS +TH F++ ++
Sbjct: 338 -AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFISKKFVGKH 380
Query: 364 GCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
G + + + G S+S + S + + Q F + LL D++LG +WL
Sbjct: 381 GL-IREELSTPMRIHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWL 439
Query: 423 RSLGAILWDFSKLTMQFT-WKGQTVQLTGYDSL 454
++ D + T+ T KG+TV GY SL
Sbjct: 440 TKFKGVI-DCANRTVTLTNEKGETV---GYKSL 468
>gi|77555575|gb|ABA98371.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 452
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 30/221 (13%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 68 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 115
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 116 KARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 175
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 176 PLMVSTPSDQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 235
Query: 432 FSKLTMQFT-WKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ + TV +SL +NQ+ L+E
Sbjct: 236 NRKVTLTSNDGRVVTVHALSSESL------RSRLNQITLEE 270
>gi|77551772|gb|ABA94569.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 81/215 (37%), Gaps = 27/215 (12%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKD 302
P PP P + E AK G CFNC E +C P+ + A +
Sbjct: 584 APRPPMAPAQSGPPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS 643
Query: 303 EQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQ 362
AE + PE + G P N++ T+L DS +TH F++ +
Sbjct: 644 --AEEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFISKKFVGR 685
Query: 363 YGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
YG + G +S V + Q F + LL D++LG +WL
Sbjct: 686 YGLRKEELSTPMRVHTPGNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 745
Query: 423 RSLGAILWDFSKLTMQFT-WKGQTVQLTGYDSLPP 456
++ D + T+ T KG+TV Y +L P
Sbjct: 746 TKFKGVI-DCANRTVTLTNEKGETVV---YKTLAP 776
>gi|34015184|gb|AAQ56379.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1689
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 33/222 (14%)
Query: 264 QTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET--L 315
Q R A+G +CFNC F+PGH +C P + +Q +A P
Sbjct: 554 QGRRDAQGQQRVCFNC---FEPGHFADKCPKP-----------RRQQGQAPPR-PNNGGK 598
Query: 316 EVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+V+ + T ++ + + G H + TIL DS +H F++ + V
Sbjct: 599 DVTRGRVNHVTAEDVLTTPDIIVGTFLIHSIPATILFDSGPSHSFISMPFVGRNQLGVER 658
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ GV+++ VP+ QG F D LL D++LG WL ++
Sbjct: 659 LRNPLLITTPRGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 718
Query: 430 WDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D ++ T+ ++G + + PP A ++QL L E
Sbjct: 719 -DCARHTVTL-YRGPDQPVVFF--APPTSAGSSVLHQLGLPE 756
>gi|77554740|gb|ABA97536.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1516
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 28/226 (12%)
Query: 225 PPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNC 276
P N+ S Q + PPP + P + +V+ Q+E+ KG CFNC
Sbjct: 294 PSNFNNDYNGGSHNNSKQHNHNSTPPPLMAPAQSDPPAVSVQSEQPKKGAVGKPGPCFNC 353
Query: 277 DEQFKPGH-RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKG 335
K GH K P+L + QA A + + + + + + G P N+
Sbjct: 354 G---KHGHFASKCPKL----NRTRPRFIQARAHDVSAKEAQAAPEVVLGTFPVNS----- 401
Query: 336 NLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVN 395
+ T+L DS ++H F++ A +G V G + ++ C V +
Sbjct: 402 ----YPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIE 457
Query: 396 SQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
+ F + LL D++LG +WL R+ G I D + T+ T
Sbjct: 458 IKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI--DCASRTITLT 501
>gi|62733144|gb|AAX95261.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62733825|gb|AAX95934.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550593|gb|ABA93390.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 37/251 (14%)
Query: 235 TKTGGSSQPSL-LGPP--PPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH--- 284
T+ G + +P L LGP P G S +Q +R +G +CFNC + PGH
Sbjct: 244 TQQGNNQKPRLTLGPQSMPQGA------STQQQPAKREQGSKPVVCFNCGD---PGHYAD 294
Query: 285 RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV- 342
+C P+ + K ++ +P + + + + A Q+ + G + V
Sbjct: 295 KCPKPRRV--------KVVPTQSNSTVPAS-KARVNHVAAAEAQDAPDVILGTFLVNLVP 345
Query: 343 -TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + A S + V + QG F
Sbjct: 346 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSAPSNQALSLQRSPSVRIEIQGVPF 405
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 406 LANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESL 460
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 461 RSRLNQITLEE 471
>gi|62734487|gb|AAX96596.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|108864323|gb|ABA93205.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1255
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 40/238 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC E PGH +C P+
Sbjct: 101 PPAPAVQP-------GQGRRDAQGQQHLCFNCFE---PGHFADKCSKPR----------- 139
Query: 302 DEQAEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHI 353
Q + P +V+ + T ++ + + G H + TIL DS ++H
Sbjct: 140 -RQQDQTPPHPNNGGKDVTRGRVNHVTAEDVLTTPDIIVGTFLIHSIPATILFDSKASHS 198
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F++ + V + GGV+++ VP+ QG F D L
Sbjct: 199 FISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLIPLDTKYL 258
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++L WL ++ D ++ T+ ++G + + PP A ++QL L E
Sbjct: 259 DVILEMNWLAQFQGVV-DCARRTVTL-YRGPDQPVVFF--APPTSAGSSVLHQLGLPE 312
>gi|27552560|gb|AAO19383.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710558|gb|ABF98353.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1770
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 22/220 (10%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ + I + A
Sbjct: 576 STQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV----KIVPVQSNSTAPASKA 628
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
V++ GA NL T+L DS +TH FL+ S A +G V +
Sbjct: 629 RVNRVAVAEAQGAPDVILGTFLVNLVP--ATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 686
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 687 PLMVSTPCNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCA 746
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ +GQ V + S + +NQ+ L+E
Sbjct: 747 NRKVTLTSN-EGQVVTVYALSS----ESLRSRLNQITLEE 781
>gi|116308939|emb|CAH66066.1| OSIGBa0092O07.1 [Oryza sativa Indica Group]
gi|116309115|emb|CAH66220.1| OSIGBa0157N01.6 [Oryza sativa Indica Group]
Length = 1445
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 28/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRR--LSVAEQTERRAKGL------CFNCDEQFKPGH-RCKA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 307 NNSKQRNHNSTPPPLMAPAQSDPPAVSAQSEKPKKGAVGKPGPCFNCS---KHGHFASKC 363
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L ++EE EV L G P N+ + T+L DS
Sbjct: 364 PKLNRTRPRFIQARANHVSVEEAQTAPEVVL----GTFPVNS---------YPATVLFDS 410
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A +G V G + + C V + + F + LL
Sbjct: 411 GASHSFISKRFAGAHGLSVVELKIPMQVHTPGNDMRIAHYCPSVTIEIKRSPFLSNLILL 470
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
D++LG +WL R G I D + T+ T
Sbjct: 471 ESKDLDVILGMDWLTRHKGVI--DCASRTITLT 501
>gi|116308971|emb|CAH66095.1| OSIGBa0114I04.2 [Oryza sativa Indica Group]
Length = 1361
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 23/189 (12%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ + K A++ +P
Sbjct: 295 STQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVP 343
Query: 313 ETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 344 AS-KARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVED 402
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + S + V + QG F + LL D++LG +WL R G I
Sbjct: 403 LRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVI 462
Query: 429 LWDFSKLTM 437
K+T+
Sbjct: 463 DCANRKVTL 471
>gi|32487715|emb|CAE05392.1| OSJNBa0022F16.16 [Oryza sativa Japonica Group]
Length = 1402
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 86/409 (21%), Positives = 145/409 (35%), Gaps = 82/409 (20%)
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWL----EQTMGNMTWAQFKRAL------------ 146
L + E D + + L+G A W+ E+ G TW +F A
Sbjct: 16 LVRMREADKVIFTVNQLEGPAGDWWDTYKEAREEDAGEPTWDEFTAAFHENFVPAAVMRM 75
Query: 147 ---------------------VTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIK--- 182
TQ + GD E I F+ GL ++++
Sbjct: 76 KKNEFRRPRQGNTTVQEYLNRFTQLTRYAIGDLAD-----EEEKIDKFIEGLNDELRGPM 130
Query: 183 IGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQ 242
IG SL+ ++ R + + V + R R +M+RP P + P + G
Sbjct: 131 IGQDHESFQSLIN--KVVRLENDRKVVEHNR-KRRLAMNRP-PQVATQHPKGATSSGWKP 186
Query: 243 PSLLGPPPPGLPPFRRLSVAEQTERRAK------------GLCFNCDEQFKPGHRC---- 286
+ P F R T+ RA G CFNC E ++C
Sbjct: 187 TVVTTNRPTAHSNFHRPVT---TQNRAPAPNQAATGVMRPGSCFNCGEYGHFANKCPHLN 243
Query: 287 KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALT-GATPQNTMRLKGNLKKHGVTI- 344
K P +A A L T + + A G N +R + + GV I
Sbjct: 244 KTPIRTGANAMAIHGAATPAAGRGLFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLIG 303
Query: 345 -----------LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVP 393
L+DS ++H F++ ++Q+ + + + + GG ++ S C VP
Sbjct: 304 MFSINSTPVKVLLDSGASHSFISLEASQQHNLTLVGVRKPMIVHSPGGEVTVSHACIDVP 363
Query: 394 VNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
++ + F + +L DI+LG +WL ++ G I ++T+ W
Sbjct: 364 IHLRDVVFPSNLMVLIPQTLDIILGMDWLTKNKGIIDCRRREVTLTTPW 412
>gi|449522383|ref|XP_004168206.1| PREDICTED: uncharacterized protein LOC101227928 [Cucumis sativus]
Length = 690
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 283 GHRCKAPQL-----LLLDA---------DIEDKDEQAEALE--ELPETLEVSLKALTGAT 326
G RCKA +L ++D D+E ++E+ L+ + + E SL + G +
Sbjct: 562 GTRCKAKKLQSMRMFVVDENGSEVEIFDDMEPREEETIELQIAGVVDAAEFSLNLVMGFS 621
Query: 327 PQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
T+++KG ++ V + ID +TH F+ + + P+ TT F+V + G +
Sbjct: 622 SSGTLKMKGIIENREVIVFIDCRATHNFIAHRVVDELELPLIETTHFRVIMGMGKGAAVR 681
Query: 387 GK 388
GK
Sbjct: 682 GK 683
>gi|224157741|ref|XP_002337887.1| predicted protein [Populus trichocarpa]
gi|222869973|gb|EEF07104.1| predicted protein [Populus trichocarpa]
Length = 116
Score = 47.0 bits (110), Expect = 0.021, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
R+D L GENP + I +C+ + +L + + LA +LDG A W+ N+
Sbjct: 5 RIDLSNLHGENPRNWIRKCKNFFKLNYIPAQQWVELASLYLDGKAKIWFEGFLYAGENLA 64
Query: 139 -WAQFKRALVTQFGTFED 155
W +F RAL +FG E+
Sbjct: 65 IWEEFTRALCIRFGNGEN 82
>gi|15217244|gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa Japonica Group]
gi|19881702|gb|AAM01103.1|AC098682_7 Putative retroelement [Oryza sativa Japonica Group]
gi|31431123|gb|AAP52945.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 25/212 (11%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 577 SQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 636
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 637 ARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 678
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 679 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLD 737
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
++LG +WL ++ S+ KG+TV
Sbjct: 738 VILGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|146291076|sp|Q7LHG5.2|YI31B_YEAST RecName: Full=Transposon Ty3-I Gag-Pol polyprotein; AltName:
Full=Gag3-Pol3; AltName: Full=Transposon Ty3-2 TYA-TYB
polyprotein; Contains: RecName: Full=Capsid protein;
Short=CA; AltName: Full=p24; Contains: RecName:
Full=Spacer peptide p3; Contains: RecName:
Full=Nucleocapsid protein p11; Short=NC; Contains:
RecName: Full=Ty3 protease; Short=PR; AltName: Full=p16;
Contains: RecName: Full=Spacer peptide J; Contains:
RecName: Full=Reverse transcriptase/ribonuclease H;
Short=RT; Short=RT-RH; AltName: Full=p55; Contains:
RecName: Full=Integrase p52; Short=IN; Contains:
RecName: Full=Integrase p49; Short=IN
Length = 1498
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 272 LCFNCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCF C K GHR C+A + +L D ++E KD+Q ++ LP +++ + T +
Sbjct: 266 LCFYCK---KEGHRLNECRARKAVLTDLELESKDQQTLFIKTLPIVHYIAIPEMDN-TAE 321
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK--QYGCPVTTTTQFQVTVADGGVISSS 386
T++++ V L DS S F+ + + +Y T +F+ VA ++S
Sbjct: 322 KTIKIQNT----KVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSE 377
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ +N Q L ++L +++G LR IL
Sbjct: 378 AVTIDLKIND--LQITLAAYILDNMDYQLLIGNPILRRYPKIL 418
>gi|77555470|gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + + + ++ A +P +
Sbjct: 298 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRVKV---VPTQNNSA-----VPAS- 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCA 465
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 466 NKKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 500
>gi|15217216|gb|AAK92560.1|AC051624_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431025|gb|AAP52863.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1714
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 25/212 (11%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 514 SQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 573
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 574 ARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 615
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 616 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLD 674
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
++LG +WL ++ S+ KG+TV
Sbjct: 675 VILGMDWLTKFKGVIDCASRTVTLTNEKGETV 706
>gi|108862573|gb|ABA97909.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1613
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
TIL DS ++H F+ + V + GGV+++ VP+ QG F
Sbjct: 537 TILFDSGASHSFIYVPFVGRNRLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 596
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHG 462
D LL D++LG WL ++ D ++ T+ ++G + + PP
Sbjct: 597 SDLILLDTKNLDVILGINWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVGSS 652
Query: 463 EINQLLLQE 471
E++Q+ L E
Sbjct: 653 ELHQIGLSE 661
>gi|50511449|gb|AAT77372.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51854392|gb|AAU10772.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1501
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 29/220 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGHRC-KA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 292 NNSKQRNHNSTPPPLMAPAQSDPPAVSVQSEQPKKGAVGKPGPCFNCG---KHGHFAGKC 348
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L QA A E + + + + G P N+ + T+L DS
Sbjct: 349 PKLNRTGPRFI----QARANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFDS 395
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A +G V G + ++ C V + + F + LL
Sbjct: 396 GASHSFISKRFAGTHGLSVVELKIPMKVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLILL 455
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW-KGQTV 446
D++LG +WL R+ G I D + T+ T KG+ V
Sbjct: 456 ESKDLDVILGMDWLTRNKGVI--DCASRTITLTNDKGEKV 493
>gi|336382820|gb|EGO23970.1| hypothetical protein SERLADRAFT_439277 [Serpula lacrymans var.
lacrymans S7.9]
Length = 250
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 37/133 (27%)
Query: 256 FRRLSVAEQTERRAKGLCFNCDEQFKPGHRC----KAPQLLLLDADIED----------- 300
+RL+ E+ RR +G CF C+E+ G C K P+ + + ED
Sbjct: 124 VKRLTKDEEETRRKEGRCFICNEKGHIGRNCRNKGKTPERKVRQTETEDDVKTVVEEDRV 183
Query: 301 -----------KDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKH--GVTILID 347
+D++AEA++EL + E ++ A N++R+ +LK+ G LID
Sbjct: 184 QNIMRMWRELGEDQKAEAMKELED--EATINA-------NSLRIDCSLKQKTIGTKALID 234
Query: 348 SSSTHIFLNSSLA 360
S +T F+++ A
Sbjct: 235 SGATDDFMDTKFA 247
>gi|77549254|gb|ABA92051.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 25/211 (11%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDA 296
QP+ P P + P + A+ + E AK G CFNC E +C P+ + A
Sbjct: 578 QPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQA 637
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ AE + PE + G P N++ T+L DS +TH F++
Sbjct: 638 RVNHAS--AEEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFIS 679
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDI 415
+ +G + + V G S+S + S + + Q F + LL D+
Sbjct: 680 KKFVRMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDV 738
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+LG +WL ++ S+ KG+TV
Sbjct: 739 ILGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|38346484|emb|CAE03723.2| OSJNBa0021F22.17 [Oryza sativa Japonica Group]
Length = 1083
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
TIL DS ++H F++ + V + GGV+ + VP QG F
Sbjct: 570 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMIAKYYSPAVPTEIQGIPFP 629
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHG 462
D LL D+VLG WL ++ D ++ T+ ++G + + PP +
Sbjct: 630 SDLILLDTKNLDVVLGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSS 685
Query: 463 EINQLLLQE 471
E++Q+ L E
Sbjct: 686 ELHQIGLSE 694
>gi|108862764|gb|ABA98792.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1631
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 32/212 (15%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAE-------ALEELPETLEVSLK 320
G+CFNC E PGH +C P+ + + + A A E EV L
Sbjct: 589 GVCFNCGE---PGHYSDKCLKPRRVKVVPAQNNSTTPASKSRVNHVAAAEAQGAPEVIL- 644
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG 380
G P N++ T+L DS +TH L+ S A +G + + +
Sbjct: 645 ---GMFPVNSV---------PATVLFDSGTTHSILSMSFAGNHGMEIEDLRRPLMISTPS 692
Query: 381 GVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQF 439
SS + V + QG F + LL +++LG +WL R G I K+T+
Sbjct: 693 NQALSSQRSPSVRIEIQGVPFLANLILLESKYLEVILGMDWLARYKGVIDCANRKVTLTS 752
Query: 440 TWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
GQ V + S P +NQ+ L+E
Sbjct: 753 N-DGQVVTVHALPSEPL----RSSLNQITLEE 779
>gi|356503071|ref|XP_003520335.1| PREDICTED: uncharacterized protein LOC100785238 [Glycine max]
Length = 498
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 306 EALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
+AL P ++SL AL+G T+R+ G + H V IL+D STH F+ + +
Sbjct: 165 QALANQPSLAQLSLHALSGHPASATLRITGTVNGHEVVILVDGGSTHNFVQDRMVRFLNL 224
Query: 366 PVTTTTQFQVTVADGGVI--SSSGKCS 390
+T + V +G I GK S
Sbjct: 225 AAQSTPRLTFMVGNGSEIRCDQCGKTS 251
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 63 EPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD 122
E A I + QP + L+ G + S I + Q+ + + L +A +LDG
Sbjct: 49 ETASPIRSSRHQPPRMNLEVPCFDGTDTMSWIIKISQFFDYHGTPDDERLQVAFFYLDGL 108
Query: 123 AVPWYHWLEQTMGNMTWAQFKRALVTQFG-TFEDGDAVGTQNLPESFFISCFLS 175
A+ W+ W+ ++ + +W F +AL F +F D L + I +LS
Sbjct: 109 ALSWFQWIFRSDQSPSWYGFLQALEMHFAPSFYDDPHDALLKLSQEDSIDAYLS 162
>gi|32487925|emb|CAE05273.1| OSJNBb0014D23.7 [Oryza sativa Japonica Group]
Length = 302
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 28/149 (18%)
Query: 85 LSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQF-- 142
G+NP CE+Y + + + + +A + G+A W + + +TW +F
Sbjct: 134 FDGDNPQMWKSNCEEYFEIYGVHPRNWVRVAGLNFSGNAAFWLQSMRPKLVGVTWQEFTN 193
Query: 143 ----------KRALVTQFGTFEDGDAVG----------------TQNLPESFFISCFLSG 176
K L+ Q+ +V + +LP ++F++ F+ G
Sbjct: 194 QVCLRFTKDRKEVLIRQWFHIAQDSSVSEYVEKFDGIMHQLLAYSSSLPLNYFVTKFVEG 253
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEE 205
L+ I+ GV M KP L LA QEE
Sbjct: 254 LKPAIRSGVLMQKPQDLDSACSLALLQEE 282
>gi|18958673|gb|AAL82656.1|AC092387_4 retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|20270059|gb|AAM18147.1|AC092172_7 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1338
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 315 LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
L +SL A TG + M + +L + LIDS H FL+ A + G
Sbjct: 246 LRISLHAATGVRASDAMHITAHLGDTDLYTLIDSGLMHTFLSQDTAARVGRAPQPRMGLN 305
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFF 406
VTVA+G ++ G +P+ G +F D +
Sbjct: 306 VTVANGDKVACPGVFPDMPLQIAGEEFATDVY 337
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 75 PRHIRLDFLVLSGE-NPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQT 133
PR+ +LDF G +P + RCEQ+ R E + + LA HL A WY LE+
Sbjct: 106 PRYHKLDFPKFDGRGDPLPFLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLERD 165
Query: 134 MGNMTWAQFKRALVTQFG 151
+W +F L ++G
Sbjct: 166 HEPPSWHRFSELLNMRYG 183
>gi|19881710|gb|AAM01111.1|AC098682_15 putative retroelement [Oryza sativa Japonica Group]
Length = 1043
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
T+ADGG + + V QG F D +L + G DI+LG EWL + D+ +
Sbjct: 299 TIADGGRMQCNSCVKGVEWWCQGSSFVTDLKVLALGGYDIILGMEWLEQFSPMWIDWKRK 358
Query: 436 TMQFTWKGQTVQLTG 450
+F + + V LTG
Sbjct: 359 KRRFNLQDKRVTLTG 373
>gi|78183247|emb|CAJ00276.1| hypothetical protein [Lotus japonicus]
Length = 148
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 2 TIKELEERVEQ-----LSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQ 56
+I+E EER+ ++ E Q N QE + + Q R + P
Sbjct: 10 SIREAEERIMAAMDPCIACHMRELELWFETQFNGFQEAMRGIGLQVTDLASARRSRTPGD 69
Query: 57 INNQQPEPAGRIGGALVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAI 116
+++ P R RLDF S ++ S I +CE++ L E + +++A
Sbjct: 70 GDHRMP------------TRLTRLDFPKFSKDDVDSWIAKCERFFALDGTPEGERVAVAS 117
Query: 117 GHLDGDAVPWYHWLEQ-TMGNMTWAQFKRAL 146
+D + W+ LEQ T+G +TW F AL
Sbjct: 118 IAMDESSFRWFQGLEQGTVGRVTWPDFAAAL 148
>gi|125556203|gb|EAZ01809.1| hypothetical protein OsI_23834 [Oryza sativa Indica Group]
gi|125597977|gb|EAZ37757.1| hypothetical protein OsJ_22094 [Oryza sativa Japonica Group]
Length = 310
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 28/151 (18%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+ +F +GE+P + I + +Y L E + + +A ++ G A W + +T
Sbjct: 116 KFNFPEFNGEHPEAWIRKANKYFSLTKTPEEEKVLVAEVYITGKADQWIDSYDIPTETLT 175
Query: 139 WAQF------------KRALVTQFGTFEDGDAVGTQ----------------NLPESFFI 170
W +F K + F + +V T NL E +F+
Sbjct: 176 WPEFCTMVCKRFAAKSKVEITDTFRNLKQYSSVETYIDKFEEIMPLVKRNNPNLNEEYFL 235
Query: 171 SCFLSGLREDIKIGVQMLKPASLLQTFELAR 201
F+SGL+E IK ++ + SL+Q +E AR
Sbjct: 236 DYFISGLKEHIKRPLKSMGIHSLVQAYEHAR 266
>gi|62734534|gb|AAX96643.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1643
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 40/238 (16%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
PP P + P Q R A+G LCFNC E PGH +C P+
Sbjct: 519 PPAPAVQP-------GQGRRDAQGQQHLCFNCFE---PGHFADKCSKPR----------- 557
Query: 302 DEQAEALEELPET--LEVSLKALTGATPQNTMR----LKGNLKKHGV--TILIDSSSTHI 353
Q + P +V+ + T ++ + + G H + TIL DS ++H
Sbjct: 558 -RQQDQTPPHPNNGGKDVTRGRVNHVTAEDVLTTPDIIVGTFLIHSIPATILFDSKASHS 616
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
F++ + V + GGV+++ VP+ QG F D L
Sbjct: 617 FISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLIPLDTKYL 676
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
D++L WL ++ D ++ T+ ++G + + PP A ++QL L E
Sbjct: 677 DVILEMNWLAQFQGVV-DCARRTVTL-YRGPDQPVVFF--APPTSAGSSVLHQLGLPE 730
>gi|38347247|emb|CAD39360.2| OSJNBa0059H15.11 [Oryza sativa Japonica Group]
Length = 585
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 262 AEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET 314
A Q ++ +G +CFNC E PGH +C P+ + K ++ +P +
Sbjct: 255 APQPAKKEQGSKLVVCFNCGE---PGHYADKCPKPRRV--------KVVPVQSNSTVPAS 303
Query: 315 LEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTT 371
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 304 -KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLR 362
Query: 372 QFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILW 430
+ + S + V + +G F + LL D++LG +WL R G I
Sbjct: 363 RPMMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDC 422
Query: 431 DFSKLTMQFT-WKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ + TV +SL +NQ+ L+E
Sbjct: 423 ANRKVTLTSNGGRVVTVHALSSESL------RSRLNQITLEE 458
>gi|108708504|gb|ABF96299.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1822
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 26/232 (11%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE 303
P P +P ++ + EQ + +CFNC + PGH +C P+ + K
Sbjct: 637 APRPVAVPAQQQPAKREQGNKPV--VCFNCGD---PGHYADKCPKPRRV--------KVV 683
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLA 360
A+ +P + + + + A Q + G + V T+L DS +TH FL+ S A
Sbjct: 684 PAQNNSAVPAS-KARVNHVAAAEAQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFA 742
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+G V + + S + V + QG F + LL D++LG +
Sbjct: 743 GNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMD 802
Query: 421 WL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL R G I K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 803 WLARHKGVIDCANKKVTLT-SYDGRVVTVHALSS----ESLRSRLNQITLEE 849
>gi|38567897|emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa Japonica Group]
Length = 1634
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 34/236 (14%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIE 299
GP P P +Q +R +G +CFNC + PGH +C P+ +
Sbjct: 525 GPRPVAAP------AQQQPVKREQGSKPVVCFNCGD---PGHYADKCPKPRRV------- 568
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLN 356
K A+ +P + + + + A Q+ + G + V T+L DS +TH FL+
Sbjct: 569 -KVVPAQNNSAVPAS-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLS 626
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
S +G V + + S + V + QG F + LL D++
Sbjct: 627 MSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVI 686
Query: 417 LGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
LG +WL R G I K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 687 LGMDWLARHKGVIDCANKKVTLT-SYDGRVVTVHALSS----ESLRSRLNQITLEE 737
>gi|6322110|ref|NP_012184.1| gag-pol fusion protein [Saccharomyces cerevisiae S288c]
gi|285812571|tpg|DAA08470.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288c]
Length = 1498
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 272 LCFNCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCF C K GHR C+A + +L D ++E KD+Q ++ LP +++ + T +
Sbjct: 266 LCFYCK---KEGHRLNECRARKRVLTDLELESKDQQTLFIKTLPIVHYIAIPEMDN-TAE 321
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK--QYGCPVTTTTQFQVTVADGGVISSS 386
T++++ V L DS S F+ + + +Y T +F+ VA ++S
Sbjct: 322 KTIKIQNT----KVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSE 377
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ +N Q L ++L +++G LR IL
Sbjct: 378 AVTIDLKIND--LQITLAAYILDNMDYQLLIGNPILRRYPKIL 418
>gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431346|gb|AAP53141.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1683
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + + + ++ A + +
Sbjct: 573 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRVKV---VPAQNNSAVSASK----- 621
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 622 -ARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 680
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 681 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 740
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 741 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 775
>gi|78708471|gb|ABB47446.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1705
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 613 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQTAPEVV-------LGTFP 663
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 664 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSVS 714
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 715 FSPSVLIEIQRLPFLANLILLESKYLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 773
Query: 447 QLTGYDSLPP 456
Y SL P
Sbjct: 774 V---YKSLAP 780
>gi|78708216|gb|ABB47191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1443
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 37/248 (14%)
Query: 238 GGSSQPSL-LGPP--PPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCK 287
G + +P L LGP P G P +Q +R +G +CFNC + PGH +C
Sbjct: 246 GSNQKPRLTLGPQSVPHGAP------TQQQPAKREQGSKPVVCFNCGD---PGHYADKCP 296
Query: 288 APQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TI 344
P+ + K A+ +P + + + + A Q+ + G + V T+
Sbjct: 297 KPRRV--------KVVPAQNNSTVPAS-KARVNHVAAAEAQDAPDVILGTFPVNSVPATV 347
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD 404
L DS +TH FL+ S A +G V + + S + V + +G F +
Sbjct: 348 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIEIKGVPFLAN 407
Query: 405 FFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGE 463
LL D++LG +WL R G I K+T+ G+ V + S + +
Sbjct: 408 LILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESLRSK 462
Query: 464 INQLLLQE 471
+NQ+ L+E
Sbjct: 463 LNQITLEE 470
>gi|29788873|gb|AAP03419.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 652
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 291 LLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
+L D D+ A + +E ETL +SL A TG + M + L + L DS S
Sbjct: 138 VLRRDGGGASDDDSAASQDEPRETLRISLHAATGVRGSDAMHIMVRLGDADLYALTDSGS 197
Query: 351 THIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
TH+FL+ A + + VTVA+G +S
Sbjct: 198 THMFLSQDAATRVDRALQPRIGLNVTVANGDKATS 232
>gi|5668805|gb|AAD46031.1|AC007519_16 F16N3.16 [Arabidopsis thaliana]
Length = 649
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWL-EQTM 134
R +LDF SG+ +F+ EQ+ L E +S+A DG A WY L E
Sbjct: 95 RSSKLDFHRFSGDRVRDWLFKLEQFFSLDFTPEELKVSIASTLCDGAAAKWYKSLFESDF 154
Query: 135 GNM---TWAQFKRALVTQFGTFEDG---------DAVGTQ-------------NLPESFF 169
G W +K L F D + G + NL E +
Sbjct: 155 GVKLLSNWNMYKLLLEEHFAEVLDDPISELKQLKETNGIEEYHKKFELLRARVNLSEDYL 214
Query: 170 ISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE 205
+ +L GL D ++ V M +P ++ Q + R E+
Sbjct: 215 VRVYLDGLHPDTQMNVNMFQPQTVCQCLLVGRLYEQ 250
>gi|77554007|gb|ABA96803.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1500
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 25/212 (11%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 321 SQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 380
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 381 ARVNHAS--AEEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 422
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 423 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQMSPFLANLILLESKDLD 481
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
++LG +WL ++ S+ KG+TV
Sbjct: 482 VILGMDWLTKFKGVIDCASRTVTLTNEKGETV 513
>gi|116309091|emb|CAH66198.1| OSIGBa0148D14.4 [Oryza sativa Indica Group]
Length = 1516
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGHRC-KA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 307 NNSKQHNHNSTPPPLMAPAQSDPPAVSVQSEQPKKGAVGKPGPCFNCG---KHGHFAGKC 363
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L QA A E + + + + G P N+ + T+L DS
Sbjct: 364 PKLNRTGPRFI----QARANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFDS 410
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A +G V G + ++ C V + + F + LL
Sbjct: 411 GASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLILL 470
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
D++LG +WL R+ G I D + T+ T
Sbjct: 471 ESKDLDVILGMDWLTRNKGVI--DCASRTITLT 501
>gi|242117586|dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1475
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAP---QLLLLDADIEDKDEQAEALEELP 312
+Q +R +G +CFNC + PGH +C P +++ + + +A
Sbjct: 300 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRVKVVPVQNNSAVPASKARVNHVAA 356
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + G P N++ T+L DS +TH FL+ S A +G V +
Sbjct: 357 AEAQDAPDVILGTFPVNSV---------PATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 407
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 408 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCA 467
Query: 432 FSKLTMQFTWKGQ--TVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ GQ TV +SL +NQ+ L+E
Sbjct: 468 NRKVTLTSN-DGQVVTVHALSTESL------RSRLNQITLEE 502
>gi|393224549|gb|EJD32896.1| hypothetical protein AURDEDRAFT_178008 [Auricularia delicata
TFB-10046 SS5]
Length = 444
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 286 CKAP----QLLLLDADIEDKDEQAEALE---ELPETLEVSLKALTGATPQNTMRLKGNLK 338
C+ P L+ +D D+ED ++ + ++ LP T L A M + +++
Sbjct: 252 CRTPVGEVHLIDVDGDMEDVNDVFQVIDWEQRLPRTASGDLAAHDSLP---LMVITASIE 308
Query: 339 KHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQG 398
+ + +ID+ ST ++ + K+ GCPV T + A+G V + G + G
Sbjct: 309 NNAIETIIDTGSTICCMSDRVWKKIGCPVYTEKATNMRDANGNVAGTLGAVLDQAIVIGG 368
Query: 399 FQFHLDFFLLPVSGCDIVLG 418
+F ++P S ++LG
Sbjct: 369 LKFFTTIHVVPNSPFSLILG 388
>gi|38347553|emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa Japonica Group]
Length = 1092
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
TIL DS ++H F++ + V + GGV+++ VP+ QG F
Sbjct: 67 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 126
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHG 462
D LL D++LG WL ++ D ++ T+ ++G + + PP
Sbjct: 127 SDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVRSS 182
Query: 463 EINQLLLQE 471
E++Q+ L +
Sbjct: 183 ELHQIGLSK 191
>gi|22725944|gb|AAN04954.1| Putative retroelement [Oryza sativa Japonica Group]
gi|78708171|gb|ABB47146.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 813
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
T+ADGG + + V QG F D +L + G DI+LG EWL + D+ +
Sbjct: 273 TIADGGRMQCNSCVKGVEWWCQGSSFVTDLKVLALGGYDIILGMEWLEQFSPMWIDWKRK 332
Query: 436 TMQFTWKGQTVQLTG 450
+F + + V LTG
Sbjct: 333 KRRFNLQDKRVTLTG 347
>gi|357470885|ref|XP_003605727.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355506782|gb|AES87924.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 458
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 127/332 (38%), Gaps = 35/332 (10%)
Query: 130 LEQTMGNMTWAQFKRALVT-------------QFGTFEDGDAVGTQNLPESFFISCFLSG 176
LEQ +TWA F+R + +F + GD T+ + ++ F
Sbjct: 100 LEQDGAVVTWAVFRREFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELAKFYPH 159
Query: 177 LREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITK 236
+I + +K FE + Y +S RR + SR P + +
Sbjct: 160 YTAEIAEFSKCIK-------FENEDMKAHYKVMSERR--GKGQQSRLKPYSAPADKGKQR 210
Query: 237 TGGSSQPSLLGPPPPGLPPFRRLSVAEQTE--RRAKGLCFNCDEQFKPGHRCKAPQLLLL 294
+P P + F+ ++ R K CF C ++ CK ++
Sbjct: 211 LNDERRPKRRDAPTD-IVCFKCGEKGHKSNVCDREKKKCFRCGQKGHTLADCKHGDVVCY 269
Query: 295 DADIEDKDEQAEALEELPETLEVSLK--ALTGATPQNTMRL-KGN--LKKHGVTILIDSS 349
+ + E+ ++ + P+ + K AL G N RL +G + +ID+S
Sbjct: 270 NCN-EEGHISSQCTQ--PKKVRTGGKVFALNGTQTVNEDRLIRGTCFFNSTPLIAIIDTS 326
Query: 350 STHIFLNSSLAKQYGCPVTTTT-QFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
+ H F+ A + G V+ + V G +++S C P++ G F +D L
Sbjct: 327 ALHYFIAVDCAYKLGLVVSDMKGEMVVETPAKGSLTTSLVCLSCPLSMFGGGFEVDLVCL 386
Query: 409 PVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
P++G ++ G WL + FSK T+ F+
Sbjct: 387 PLTGMHVIFGMNWLEYNRVHINCFSK-TVHFS 417
>gi|116308998|emb|CAH66117.1| OSIGBa0146N20.2 [Oryza sativa Indica Group]
Length = 1521
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ + QA E + + K + G P N+
Sbjct: 353 GSCFNCGELGHFADKCPKPR------RAGPRFIQARVNHASAEEAQAAPKVVLGTFPVNS 406
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ +G + + V G S+S + S
Sbjct: 407 I---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFS 456
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
+ + Q F + LL G D++LG +WL ++ D + T+ T KG+TV
Sbjct: 457 PSITIEIQRSPFLANLILLDSKGLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 513
>gi|21741068|emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa Japonica Group]
Length = 1516
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGHRC-KA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 307 NNSKQRNHNSTPPPLMAPAQSDPPTVSVQSEQPKKGAVGKPGPCFNCG---KHGHFAGKC 363
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L QA A E + + + + G P N+ + T+L DS
Sbjct: 364 PKLNRTGPRFI----QARANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFDS 410
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A +G V G + ++ C V + + F + LL
Sbjct: 411 GASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLILL 470
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
D++LG +WL R+ G I D + T+ T
Sbjct: 471 ESKDLDVILGMDWLTRNKGVI--DCASRTITLT 501
>gi|116309082|emb|CAH66190.1| OSIGBa0144J05.2 [Oryza sativa Indica Group]
Length = 1827
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 21/186 (11%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 659 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 709
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 710 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTPGNSSTSVS 760
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
V + Q F + LL D++LG +WL ++ S+ KG+TV
Sbjct: 761 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVV 820
Query: 448 LTGYDS 453
DS
Sbjct: 821 YKSPDS 826
>gi|116309100|emb|CAH66206.1| OSIGBa0096F13.1 [Oryza sativa Indica Group]
Length = 1827
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 21/186 (11%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 659 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 709
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 710 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTPGNSSTSVS 760
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
V + Q F + LL D++LG +WL ++ S+ KG+TV
Sbjct: 761 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVV 820
Query: 448 LTGYDS 453
DS
Sbjct: 821 YKSPDS 826
>gi|77556045|gb|ABA98841.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K A++ +P + + + + A Q
Sbjct: 333 VCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVPAS-KARVNHVAAAEAQ 380
Query: 329 NTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 381 DAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 440
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ V + QG F + LL D++LG +WL R G I K+T+ G+
Sbjct: 441 LQRSPSVRIEIQGVPFRANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSN-DGR 499
Query: 445 TVQLTGYDSLPPALANHGEINQLLLQE 471
V + S + +NQ+ L+E
Sbjct: 500 VVTVHALSS----ESLRSRLNQITLEE 522
>gi|242117488|dbj|BAH79971.1| hypothetical protein [Oryza sativa Indica Group]
Length = 1477
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 20/228 (8%)
Query: 249 PPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAP---QLLLLDADIEDKDEQA 305
P P P + A++ + +CFNC + +C P +++ + ++ +A
Sbjct: 292 PRPVAAPAQHQQFAKREQGSKPVVCFNCGDSGHYADKCPKPRRVKVVPVQSNSVVPVSKA 351
Query: 306 EALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
+ + + G P N++ T+L DS +TH FL+ S A +G
Sbjct: 352 RVNHVAAAEAQDAPDMILGTFPVNSV---------PATVLFDSGATHSFLSLSFAGNHGM 402
Query: 366 PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RS 424
V + + S + V + QG F + LL D++LG +WL R
Sbjct: 403 EVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLTRH 462
Query: 425 LGAILWDFSKLTMQFT-WKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
G I K+T+ + TVQ +SL +NQ+ L+E
Sbjct: 463 KGVIDCANKKVTLTSNDGRVVTVQALSSESL------RSRLNQITLEE 504
>gi|21742760|emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa Japonica Group]
Length = 1827
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 21/186 (11%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 659 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 709
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 710 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTPGNSSTSVS 760
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
V + Q F + LL D++LG +WL ++ S+ KG+TV
Sbjct: 761 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVV 820
Query: 448 LTGYDS 453
DS
Sbjct: 821 YKSPDS 826
>gi|147861322|emb|CAN83996.1| hypothetical protein VITISV_031193 [Vitis vinifera]
Length = 499
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 28/149 (18%)
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
TMR+ + H + +LIDS STH F+N +A+ P+ F V VA+G + KC
Sbjct: 73 TMRVSAKVGPHELIVLIDSGSTHNFINERIAELLQLPMVPIEPFNVKVANGDPL----KC 128
Query: 390 SHVPVNSQGFQFHLDFFLLPV---------SGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
+N+ + D FL+P +I+ ++ LG +D
Sbjct: 129 QERALNAVTIK---DRFLIPTVDDMPDELYGAFEILRHHKFFIKLGKCAFD--------- 176
Query: 441 WKGQTVQLTGYDSLPPAL-ANHGEINQLL 468
Q V+ GY P ++ + G+I +L
Sbjct: 177 --QQEVEYLGYVVTPQSVKVDQGKIKAML 203
>gi|77551642|gb|ABA94439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1267
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 23/187 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 404 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSVS 454
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 455 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 513
Query: 447 QLTGYDS 453
DS
Sbjct: 514 VYKSPDS 520
>gi|20042987|gb|AAM08795.1|AC090486_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431148|gb|AAP52970.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1785
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 25/212 (11%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 585 SQPNRGTAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 644
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 645 ARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 686
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 687 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLD 745
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
++LG +WL ++ S+ KG+TV
Sbjct: 746 VILGMDWLTKFKGVIDCASRTVTLTNEKGETV 777
>gi|32489966|emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa Japonica Group]
Length = 1412
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K + +P +
Sbjct: 298 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPVQNNSAVPAS- 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 465
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 466 NKKVTLT-SYDGRVVTVHALSS----ESLRSRLNQITLEE 500
>gi|77552331|gb|ABA95128.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1309
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 30/214 (14%)
Query: 238 GGSSQPSLLGPPPPGLPPFRR--LSVAEQTERRAKGL------CFNCDEQFKPGH-RCKA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 190 NNSKQHNHNSTPPPLMAPAQSDPPAVSAQSEQPKKGAVGKPGPCFNCG---KHGHFASKC 246
Query: 289 PQLLLLDAD-IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILID 347
P+L I+ A+E + + + + G P N+ + T+L D
Sbjct: 247 PKLNRTGPRFIQAHANHVSAME-----AQAAPEVVLGTFPVNS---------YPATVLFD 292
Query: 348 SSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFL 407
S ++H F++ A +G V G + ++ C V + + F + L
Sbjct: 293 SGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIRRSPFLSNLIL 352
Query: 408 LPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
L D+VLG +WL R+ G I D + T+ T
Sbjct: 353 LESKDLDVVLGMDWLTRNKGVI--DCASRTITLT 384
>gi|38344008|emb|CAE03176.2| OSJNBa0070O11.7 [Oryza sativa Japonica Group]
Length = 1501
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGHRC-KA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 292 NNSKQHNHNSTPPPLMAPAQSDPPAVSVQSEQPKKGAVGKPGPCFNCG---KHGHFAGKC 348
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L QA A E + + + + G P N+ + T+L DS
Sbjct: 349 PKLNRTGPRFI----QARANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFDS 395
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A +G + G + ++ C V + + F + LL
Sbjct: 396 GASHSFISKRFAGTHGLSIVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLILL 455
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
D++LG +WL R+ G I D + T+ T
Sbjct: 456 ESKDLDVILGMDWLTRNKGVI--DCASRTITLT 486
>gi|77553655|gb|ABA96451.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1351
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 25/233 (10%)
Query: 222 RPSPPLLNSSPTITKTGGS----SQPSLLGPPPPGLPPFRRLSVAEQTERRAK--GLCFN 275
RP NSS GS QP+ P P + P + A+ + G CFN
Sbjct: 284 RPQHRPFNSSNFHQGASGSQHHGGQPNRGAAPRPPMAPTQSAPSAQAKKETGTKPGSCFN 343
Query: 276 CDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKG 335
C E +C P+ + QA E + + + + G P N++
Sbjct: 344 CGELGHFADKCPKPR------HTGPRFVQARVNHASAEEAQAAPEVVLGTFPVNSI---- 393
Query: 336 NLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPV 394
T+L DS +TH F++ +G + + V G S+S + S + +
Sbjct: 394 -----PATVLFDSGATHSFISKKFVGVHGL-IREELSTPMRVHTPGNSSTSVQFSPSITI 447
Query: 395 NSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 448 EIQKSPFLANLILLDSKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 499
>gi|77550763|gb|ABA93560.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1469
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 82/402 (20%), Positives = 142/402 (35%), Gaps = 68/402 (16%)
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWL----EQTMGNMTWAQFK-------------RA 145
L + E D + A L+G A W+ E+ G W +F R
Sbjct: 81 LVRVPEADKVIFAANQLEGPAGDWWDMYKEAREEDAGEPNWEEFTIAFRDNFVPAAVMRM 140
Query: 146 LVTQFGTFEDGDAV--------------GTQNLP-ESFFISCFLSGLREDIK---IGVQM 187
+F G+ T++L E I F+ GL ++++ IG
Sbjct: 141 KKNEFRRLRQGNTTVQEYLNRFTQLARYATRDLADEEEKIDKFIEGLNDELRGPMIGQDH 200
Query: 188 LKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLG 247
SL+ ++ R + + V + R R +M+RP P P T T + +P+++
Sbjct: 201 DSFQSLIN--KVVRLENDRKVVEHNR-KRRLAMNRP-PQTAPQRPKGT-TPSAWRPTVVT 255
Query: 248 PPPPGLPPFRRLSVAEQTERRAK----------GLCFNCDEQFKPGHRCKAPQLLLLDAD 297
P V Q A G CFNC E ++C P +
Sbjct: 256 TSRPAASSNFHWPVTIQNRSPAPNQAATGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTG 315
Query: 298 IEDKDEQAEA-------LEELPETLEVS----------LKALTGATPQNTMRLKGNLKKH 340
A L P+T + ++A Q + +L
Sbjct: 316 ANATAIHGTATPVAGRGLFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMFSLNST 375
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
V +L DS ++H F++ ++Q+ Q + + GG I+ C VP+ +
Sbjct: 376 PVKVLFDSGASHSFISLKASQQHNLTRVKLRQPMLVHSPGGEIAVDTACIDVPIRLRDVV 435
Query: 401 FHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
F + +L D++LG +WL + G I + ++T+ W
Sbjct: 436 FPSNLMVLIPQTLDVILGMDWLAKHRGIIDYRRREVTLTTPW 477
>gi|9967511|emb|CAC05636.1| putative protein [Arabidopsis thaliana]
Length = 221
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG--- 135
++DF +G+ +F+ EQ+ + E + +A H D W+ + Q++
Sbjct: 68 KVDFPRFNGDGIKDWLFQIEQFFLIDHTPEELKVDIASIHFDDIDATWHQSIVQSIMWRH 127
Query: 136 -NMTWAQFKRALVTQFGTFEDG---------------------DAVGTQ-NLPESFFISC 172
W +K L ++ D +++ T+ L E F +S
Sbjct: 128 VRHDWWNYKLLLQVRYNKHVDDSIAKLKLLQETEGIEVYHARFESICTRVKLDEDFLVSL 187
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARF 202
+L+GL+ D ++ ++M +P ++ Q F L RF
Sbjct: 188 YLTGLKTDTQVNIRMFQPQTIQQCFNLRRF 217
>gi|326429186|gb|EGD74756.1| hypothetical protein PTSG_12517 [Salpingoeca sp. ATCC 50818]
Length = 282
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 82/220 (37%), Gaps = 40/220 (18%)
Query: 82 FLVLSGENPTSLIFRCEQYQRLAALLETD-VLSLAIGHLDGDAVPWYHWLEQTMGNMT-- 138
F + E +F E + R + + D L LAI L G A+ WY L+ NM
Sbjct: 54 FSGATDERADDFLFCLETFVRYHRIDDDDQRLLLAISCLQGHALTWYRSLDPAPTNMHEL 113
Query: 139 ----WAQFK-----RALVTQFGTF-EDGDA-----------VGTQNLPESFFISCFLSGL 177
A FK R L Q +DG+ V ++ I F+ GL
Sbjct: 114 QEQLRASFKTIDEQRQLRDQLRRLRQDGNVQDYVFKFRQLMVQIDDMSRLDRIEAFIHGL 173
Query: 178 REDIKIGVQMLKPASLLQTFELA-RFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITK 236
R + V P +L Q ++LA R+ Y ++ S R +PP T+
Sbjct: 174 RPRTRQEVSFHGPDTLEQAYQLASRYDRNYTTANS-------SYRRGAPP--------TQ 218
Query: 237 TGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNC 276
++ P RRL+ E+ E R +G CF C
Sbjct: 219 PPKFDDRAMDIDAIRAQRPLRRLTDQERDELRRRGACFRC 258
>gi|224142047|ref|XP_002324370.1| predicted protein [Populus trichocarpa]
gi|222865804|gb|EEF02935.1| predicted protein [Populus trichocarpa]
Length = 95
Score = 45.8 bits (107), Expect = 0.052, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 162 QNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRR 213
+ L +S ++CFL GL+E++++GV ML P +++ + LA+ QEE + R
Sbjct: 28 RGLSDSHRLNCFLGGLKEEMRVGVGMLNPQNIVAAYWLAKMQEENLKIMETR 79
>gi|20177640|gb|AAM14695.1|AC097446_24 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1680
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 37/196 (18%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ + K A++ +P
Sbjct: 502 STQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRHV--------KVVPAQSNSAVP 550
Query: 313 ETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYG----- 364
+ + + + A Q+ + G + V T+L DS +TH FL+ S A +G
Sbjct: 551 AS-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVED 609
Query: 365 --CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
CP+ +T + S + V + QG F + LL D++LG +WL
Sbjct: 610 LRCPLMVSTPSNQAL-------SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWL 662
Query: 423 -RSLGAILWDFSKLTM 437
R G I K+T+
Sbjct: 663 ARHKGVIDCANRKVTL 678
>gi|77556709|gb|ABA99505.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1307
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC E PGH +C P+ + K A++ +P + + + + A Q
Sbjct: 286 VCFNCGE---PGHYADKCPKPRRM--------KVVPAQSNSTVPAS-KARVNHVAAAEAQ 333
Query: 329 NTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 334 DAPDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 393
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+ V + QG F + LL D++LG +WL R G I K+T+
Sbjct: 394 MQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTL 446
>gi|38346698|emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa Japonica Group]
Length = 806
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K ++ +P +
Sbjct: 295 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPTQSNSTVPAS- 342
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 343 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 402
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 403 PLMVSTPSNQALSLHRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 462
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ + G+ V + S + +NQ+ L+E
Sbjct: 463 NRKVTLT-SNDGRVVTVYALSS----ESLRSRLNQITLEE 497
>gi|297727539|ref|NP_001176133.1| Os10g0383200 [Oryza sativa Japonica Group]
gi|255679366|dbj|BAH94861.1| Os10g0383200 [Oryza sativa Japonica Group]
Length = 400
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 36 LSLHDQFIRFQEDRNNNQPLQIN----NQQPEPAGRIGGALVQPRHIRLDFLVLSGENPT 91
L+ D+F+ + R N P+ + + Q + + R G PR + DF G+NP
Sbjct: 102 LAAQDRFLVKGKSRFPNSPITFDIGESSVQNQSSNRFHG----PRLPKSDFPKFDGDNPK 157
Query: 92 SLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFG 151
E+Y + + + + H G+A W E TW + A+ ++FG
Sbjct: 158 LWKKNSEKYFEMYQVSYENWAKFSTLHFVGNAALWLQTNEALHSVETWPELCIAVHSKFG 217
Query: 152 TFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE 205
+D + L I F+ GL+ +IK +++ +P ++ LA+ QEE
Sbjct: 218 --KDKYQEHLEELEGLRLI--FVGGLKTEIKAAIKLHRPRTVDTALSLAKTQEE 267
>gi|242276206|gb|ACS91357.1| polyprotein [Coix lacryma-jobi]
Length = 966
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLD--------ADIEDKDEQAEALEELPETLEVSLKALTG 324
C+NC C +P+ + A++++K +Q P T ++ + TG
Sbjct: 160 CYNCGGSGHFAKSCPSPKNYNSNVPRQQGNQANLQNKQQQGNQSGSRPGTRKIYVVPKTG 219
Query: 325 --------ATPQNTMRLKGN--LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ 374
P+ + G + L DS +TH F+N +++ P+ +
Sbjct: 220 QVHHTQVETIPEGEPVMLGAFPVANQLAVTLFDSGATHSFINREFVRKHAIPICESKGKI 279
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
++ GG + ++ VP+ + +L D++LG W++ GA+L
Sbjct: 280 SILSPGGRLFANEIVHQVPIEMGRHVYPTSMIVLNHQTLDVILGMNWMQRYGAVL 334
>gi|238576120|ref|XP_002387921.1| hypothetical protein MPER_13127 [Moniliophthora perniciosa FA553]
gi|215448784|gb|EEB88851.1| hypothetical protein MPER_13127 [Moniliophthora perniciosa FA553]
Length = 650
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVN-SQGFQFHL 403
LIDS S+H F++++ ++ P T ++ + DG + + + +PV G HL
Sbjct: 359 LIDSGSSHCFIDATYVRKNSIPTETIPPVRLRLLDGSSSTIITEVATLPVTFGSGDTLHL 418
Query: 404 DFFLLPV-SGCDIVLGAEWLRSLGAIL 429
+F++ + S C+ VLG WL ++
Sbjct: 419 EFYVTKLDSECNTVLGYNWLSRYNPLI 445
>gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287634|gb|AAV31378.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1400
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K A++ P + + + + A Q
Sbjct: 311 VCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTAPAS-KARVNHVAAAEAQ 358
Query: 329 NTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 359 DAPDVILGTFSVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 418
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ V + QG F + LL D++LG +WL R G I K+T+ + G+
Sbjct: 419 LQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTL-ISNDGR 477
Query: 445 TVQLTGYDSLPPALANHGEINQLLLQE 471
V + S + +NQ+ L+E
Sbjct: 478 VVTVHALSS----ESLRSRLNQITLEE 500
>gi|77555641|gb|ABA98437.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1825
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 27/213 (12%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 625 SQPNRGTAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 684
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 685 ARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 726
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 727 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLD 785
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
++LG +WL ++ D + T+ T KG+TV
Sbjct: 786 VILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 817
>gi|134034966|sp|Q99315.3|YG31B_YEAST RecName: Full=Transposon Ty3-G Gag-Pol polyprotein; AltName:
Full=Gag3-Pol3; AltName: Full=Transposon Ty3-1 TYA-TYB
polyprotein; Contains: RecName: Full=Capsid protein;
Short=CA; AltName: Full=p24; Contains: RecName:
Full=Spacer peptide p3; Contains: RecName:
Full=Nucleocapsid protein p11; Short=NC; Contains:
RecName: Full=Ty3 protease; Short=PR; AltName: Full=p16;
Contains: RecName: Full=Spacer peptide J; Contains:
RecName: Full=Reverse transcriptase/ribonuclease H;
Short=RT; Short=RT-RH; AltName: Full=p55; Contains:
RecName: Full=Integrase p61; Short=IN; Contains:
RecName: Full=Integrase p58; Short=IN
Length = 1547
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 272 LCFNCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCF C K GHR C+A + +L D ++E KD+Q ++ LP +++ + T +
Sbjct: 266 LCFYCK---KEGHRLNECRARKAVLTDLELESKDQQTPFIKTLPIVHYIAIPEMDN-TAE 321
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK--QYGCPVTTTTQFQVTVADGGVISSS 386
T++++ V L DS S F+ + + +Y T +F+ VA ++S
Sbjct: 322 KTIKIQNT----KVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSE 377
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ +N L ++L +++G LR IL
Sbjct: 378 AVTIDLKIND--LHITLAAYILDNMDYQLLIGNPILRRYPKIL 418
>gi|110288626|gb|ABB46774.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1695
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 37/196 (18%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ + K A++ +P
Sbjct: 517 STQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRHV--------KVVPAQSNSAVP 565
Query: 313 ETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYG----- 364
+ + + + A Q+ + G + V T+L DS +TH FL+ S A +G
Sbjct: 566 AS-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVED 624
Query: 365 --CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
CP+ +T + S + V + QG F + LL D++LG +WL
Sbjct: 625 LRCPLMVSTPSNQAL-------SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWL 677
Query: 423 -RSLGAILWDFSKLTM 437
R G I K+T+
Sbjct: 678 ARHKGVIDCANRKVTL 693
>gi|51854302|gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1638
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ E + QA E + + + + G P N+
Sbjct: 523 GSCFNCGELGHFAKKCPKPR------RAEPRFVQARVNHASTEEAQAAPEVVLGTFPVNS 576
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ TIL DS +TH F++ +G + + V G S+S + S
Sbjct: 577 I---------PATILFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFS 626
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
+ + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 627 PSITIEIQRSPFLANLILLGSKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 683
>gi|62733632|gb|AAX95749.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|110288789|gb|AAP52632.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1608
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVS 318
+Q +R +G +CFNC + +C P+ + K A+ +P + +
Sbjct: 509 QQPAKREQGNKPVVCFNCGDPRHYADKCPKPRRV--------KVVPAQNNSAVPAS-KAR 559
Query: 319 LKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
+ + A Q+ + G + V T+L DS +TH FL+ S A +G V + +
Sbjct: 560 VNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLM 619
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
S + V + QG F + LL D++LG +WL ++ +K
Sbjct: 620 VSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLAKHKGVIDCANKK 679
Query: 436 TMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++ G+ V + S + +NQ+ L+E
Sbjct: 680 VTLTSYDGRVVTVHALSS----ESLRSRLNQITLEE 711
>gi|449526824|ref|XP_004170413.1| PREDICTED: uncharacterized protein LOC101223971 [Cucumis sativus]
Length = 316
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 60 QQPEPAGRIGGALV-QPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGH 118
++ E + G+ V + ++ +L+ + GENP S ++R E + + L E + + +A+
Sbjct: 111 EESEVCNEVNGSNVDRSKYAKLEMPMFLGENPESWVYRAEHFFEMNNLPENEKIRVAVVS 170
Query: 119 LDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGTFEDG 156
+ V WY W +W K + F F+D
Sbjct: 171 FGQEEVDWYRWTHNRKKVESWEDLKGRM---FDFFKDS 205
>gi|18657020|gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa]
gi|21321760|gb|AAM47295.1|AC122146_14 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430576|gb|AAP52470.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1819
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 651 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEV-------VLGTFP 701
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 702 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 751
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL G D++LG +WL ++ D + T+ T KG+T
Sbjct: 752 QFSPSITIEIQRSPFLANLILLDSKGLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 810
Query: 446 V 446
V
Sbjct: 811 V 811
>gi|55168121|gb|AAV43988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1594
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 81/206 (39%), Gaps = 20/206 (9%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + + + A V+ GA
Sbjct: 472 GVCFNCGD---PGHYADKCPKPRRM----KVVPVQSNSTAPASKARVNHVAAAEAQGAPD 524
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
NL T+L DS +TH FL+ S A +G V + + S
Sbjct: 525 VILGTFLVNLVP--ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQ 582
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQT 445
+ V + Q F + LL D++LG +WL R G I K+T+ + T
Sbjct: 583 RSPSVRIEIQEVPFLANLILLESKDLDVILGMDWLDRHKGVIDCANRKVTLTSNDGRVVT 642
Query: 446 VQLTGYDSLPPALANHGEINQLLLQE 471
V +SL P+L NQ+ L+E
Sbjct: 643 VHALSSESLRPSL------NQITLEE 662
>gi|34015295|gb|AAQ56486.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2032
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 28/223 (12%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q ++ +G +CFNC + PGH +C P+ + K A++ +P
Sbjct: 928 STQQQPAKKEQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVP 976
Query: 313 ETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + + A Q + G + V T+L DS +TH FL+ S A +G V
Sbjct: 977 AS-KARVNHVAAAEAQGAPDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVED 1035
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + S + V + QG F + LL D++LG +WL R G I
Sbjct: 1036 LRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVI 1095
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S P +NQ+ L+E
Sbjct: 1096 DCANRKVTITSN-DGRVVTVHALSSEP----LRSRLNQITLEE 1133
>gi|1945323|emb|CAA97115.1| TY3B [Saccharomyces cerevisiae]
gi|1945324|emb|CAA97117.1| TY3B [Saccharomyces cerevisiae]
Length = 1547
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 272 LCFNCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCF C K GHR C+A + +L D ++E KD+Q ++ LP +++ + T +
Sbjct: 266 LCFYCK---KEGHRLNECRARKRVLTDLELESKDQQTPFIKTLPIVHYIAIPEMDN-TAE 321
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK--QYGCPVTTTTQFQVTVADGGVISSS 386
T++++ V L DS S F+ + + +Y T +F+ VA ++S
Sbjct: 322 KTIKIQNT----KVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSE 377
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ +N L ++L +++G LR IL
Sbjct: 378 AVTIDLKIND--LHITLAAYILDNMDYQLLIGNPILRRYPKIL 418
>gi|62734341|gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549773|gb|ABA92570.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1723
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 25/188 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQ----LLLLDADIEDKDEQAEALEELPETLEVSLKALTGAT 326
G CFNC E +C P+ +L E+A+A E+ + G
Sbjct: 555 GSCFNCGELGHFADKCPKPRRARPRFVLARVNHASAEEAQAAPEV----------VLGTF 604
Query: 327 PQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
P N++ T+L DS +TH F++ YG + G +S
Sbjct: 605 PVNSI---------PTTVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 655
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
V + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 656 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 714
Query: 446 VQLTGYDS 453
V DS
Sbjct: 715 VVYKSPDS 722
>gi|108862183|gb|ABA96440.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1652
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ I+ + A A EE T EV L G P N+
Sbjct: 599 GSCFNCGELGHFADKCPKPRRAGPRF-IQARVNHASA-EEAQATPEVVL----GTFPVNS 652
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ TIL DS +TH F++ +G + G +S
Sbjct: 653 I---------PATILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSVSFSP 703
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTVQLT 449
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 704 SVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETVVYK 762
Query: 450 GYDS 453
DS
Sbjct: 763 SPDS 766
>gi|38346551|emb|CAE02128.2| OSJNBa0035M09.12 [Oryza sativa Japonica Group]
Length = 1435
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 222 RP-SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDE 278
RP +P + + ++ SQP+ P P + P + A+ + E AK G CFNC E
Sbjct: 301 RPFNPSNFHQGSSGSQNHHGSQPNRGTAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGE 360
Query: 279 QFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKG 335
+C P+ + A + AE + PE + G P N++
Sbjct: 361 LGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---- 407
Query: 336 NLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPV 394
T+L DS +TH F++ +G + + V G S+S + S + +
Sbjct: 408 -----PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITI 461
Query: 395 NSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 462 EIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 513
>gi|31432273|gb|AAP53928.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1364
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 21/186 (11%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ TIL DS +TH F++ +G + G +S
Sbjct: 404 VNSI---------PATILFDSGATHSFISKKFVGMHGLRKEELSTLMRVYTLGNSSTSVS 454
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQ 447
V + Q F + LL D++LG +WL ++ ++ KG+TV
Sbjct: 455 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCVNRTVTLTNEKGETVV 514
Query: 448 LTGYDS 453
DS
Sbjct: 515 YKSPDS 520
>gi|6321547|ref|NP_011624.1| gag-pol fusion protein [Saccharomyces cerevisiae S288c]
gi|285812302|tpg|DAA08202.1| TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288c]
Length = 1547
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 272 LCFNCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCF C K GHR C+A + +L D ++E KD+Q ++ LP +++ + T +
Sbjct: 266 LCFYCK---KEGHRLNECRARRRVLTDLELESKDQQTPFIKTLPIVHYIAIPEMDN-TAE 321
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK--QYGCPVTTTTQFQVTVADGGVISSS 386
T++++ V L DS S F+ + + +Y T +F+ VA ++S
Sbjct: 322 KTIKIQNT----KVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSE 377
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ +N L ++L +++G LR IL
Sbjct: 378 AVTIDLKIND--LHITLAAYILDNMDYQLLIGNPILRRYPKIL 418
>gi|62733379|gb|AAX95496.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734607|gb|AAX96716.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550242|gb|ABA93039.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 592
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 17/177 (9%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ + + QA E + + + + G P N+
Sbjct: 188 GSCFNCGELGHFADKCPKPR------RVGPRFVQARVNHASAEEAQAAPEVVLGTFPVNS 241
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ YG + G +S
Sbjct: 242 V---------PATVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTPGNSSTSVSYSP 292
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 293 SVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANHTVTLTNEKGETV 348
>gi|77551562|gb|ABA94359.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1505
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 601 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVPAS- 648
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 649 KARVNHVAAAEAQDAPDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 708
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 709 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 768
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 769 NRKVTLTSN-DGRVVTVHALSS----ASLRSRLNQITLEE 803
>gi|32488367|emb|CAE02926.1| OSJNBb0108J11.19 [Oryza sativa Japonica Group]
gi|32489278|emb|CAE04619.1| OSJNBa0028I23.1 [Oryza sativa Japonica Group]
Length = 1516
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRL--SVAEQTERRAKGL------CFNCDEQFKPGHRC-KA 288
S Q + PPP + P + +V+ Q+E+ KG CFNC K GH K
Sbjct: 307 NNSKQHNHNSTPPPLMAPDQSDPPAVSVQSEQPKKGAVGKPGPCFNCG---KHGHFAGKC 363
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+L QA A E + + + + G P N+ + T+L DS
Sbjct: 364 PKLNRTGPRFI----QARANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFDS 410
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ A +G V G + ++ C V + + F + LL
Sbjct: 411 GASHSFISKRFAGTHGLSVVELKIPMQVHTLGNDMRTAHYCPSVTIEIKRSPFLSNLILL 470
Query: 409 PVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
D++LG +WL R+ G I D + T+ T
Sbjct: 471 ESKDLDVILGMDWLTRNKGVI--DCASRTITLT 501
>gi|116309635|emb|CAH66687.1| OSIGBa0097A15.2 [Oryza sativa Indica Group]
Length = 1560
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + + Q+ + P+ + +T A
Sbjct: 435 GVCFNCGD---PGHYSDKCPKPRRMKVVP------AQSNSTAPAPKA---RVNHVTAAEA 482
Query: 328 QNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
Q+ + G + V T+L +S +TH FL+ S A +G V + +
Sbjct: 483 QDAPDVILGTFLVNSVPATVLFNSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQAL 542
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
S + V + QG F + LL D++LG +WL R G I K+T+
Sbjct: 543 SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGMIDCANRKVTL 596
>gi|53981942|gb|AAV25060.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53982137|gb|AAV25233.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1765
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 25/211 (11%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDA 296
QP+ P P + P + A+ + E AK G CFNC E +C P+ + A
Sbjct: 578 QPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQA 637
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ AE + PE + G P N++ T+L DS +TH F++
Sbjct: 638 RVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFIS 679
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDI 415
+G + + V G S+S + S + + Q F + LL D+
Sbjct: 680 KKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDV 738
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+LG +WL ++ S+ KG+TV
Sbjct: 739 ILGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|77555816|gb|ABA98612.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1775
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 27/213 (12%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 629 SQPNRGTAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 688
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 689 ARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 730
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 731 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLD 789
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
++LG +WL ++ D + T+ T KG+TV
Sbjct: 790 VILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 821
>gi|62733086|gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1566
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 27/213 (12%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 628 SQPNRGTAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 687
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 688 ARVNHA--SAEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 729
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 730 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLD 788
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
++LG +WL ++ D + T+ T KG+TV
Sbjct: 789 VILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 820
>gi|38346588|emb|CAE04652.2| OSJNBa0061G20.8 [Oryza sativa Japonica Group]
Length = 1598
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + + Q+ + P+ + +T A
Sbjct: 435 GVCFNCGD---PGHYSDKCPKPRRMKVVP------AQSNSTAPAPKA---RVNHVTAAEA 482
Query: 328 QNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
Q+ + G + V T+L +S +TH FL+ S A +G V + +
Sbjct: 483 QDAPDVILGTFLVNSVPATVLFNSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQAL 542
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
S + V + QG F + LL D++LG +WL R G I K+T+
Sbjct: 543 SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGMIDCANRKVTL 596
>gi|356555016|ref|XP_003545836.1| PREDICTED: uncharacterized protein LOC100800334 [Glycine max]
Length = 268
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 148 TQFGTFEDGDAVGTQ--NLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE 205
+ F + +A+ + LP F +SCF+SGL +I+ V L+P SL+Q LAR QE+
Sbjct: 125 SMFAYLAEFEALANRIMGLPTPFLLSCFISGLIPEIRREVLALQPLSLVQAATLARLQED 184
Query: 206 -YAAVSNRR 213
A +++RR
Sbjct: 185 KIAEMASRR 193
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 261 VAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDAD 297
+AE RR +GLC+NC E++ P H +A LL+ ++
Sbjct: 186 IAEMASRRKRGLCYNCSERYGPNHCSRAKFFLLISSE 222
>gi|326488997|dbj|BAJ98110.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%)
Query: 75 PRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTM 134
P R DF + G NP + +CE Y R+ L +S A + A+ W E +
Sbjct: 101 PPRPRFDFPMFDGMNPKAWRLKCEAYFRVCTLSPHTWVSCAAMYFTEGALTWLQSSEAHL 160
Query: 135 GNMTWAQFKRALVTQFG 151
W F A+ +QFG
Sbjct: 161 HYQDWGNFASAICSQFG 177
>gi|108864168|gb|ABA92247.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1378
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ P +
Sbjct: 529 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTAPAS- 576
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 577 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 636
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + ++G F + LL D++LG +WL R G I
Sbjct: 637 PLMVSTPSNQALSLQRSPSVRIENKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 696
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 697 NRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 731
>gi|147867132|emb|CAN82647.1| hypothetical protein VITISV_005196 [Vitis vinifera]
Length = 456
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 316 EVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQV 375
E+ L ALT T TM + + H V +L+DS STH F++ L P+ F V
Sbjct: 183 EIKLHALTRWTGPRTMCIIARMGPHEVVVLVDSGSTHNFISDRLENMPRLPIIHMEAFSV 242
Query: 376 TVADG 380
VA+G
Sbjct: 243 LVANG 247
>gi|108864175|gb|ABG22421.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1572
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 27/213 (12%)
Query: 241 SQPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLD 295
SQP+ P P + P + A+ + E AK G CFNC E +C P+ +
Sbjct: 628 SQPNRGTAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQ 687
Query: 296 ADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFL 355
A + AE + PE + G P N++ T+L DS +TH F+
Sbjct: 688 ARVNHA--SAEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFI 729
Query: 356 NSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCD 414
+ +G + + V G S+S + S + + Q F + LL D
Sbjct: 730 SKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLD 788
Query: 415 IVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
++LG +WL ++ D + T+ T KG+TV
Sbjct: 789 VILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 820
>gi|62701703|gb|AAX92776.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550523|gb|ABA93320.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1429
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 18/205 (8%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCFNC F+PGH +C P+ A + + + + LT TP
Sbjct: 341 LCFNC---FEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTAE-DVLT--TPD 394
Query: 329 NTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
+ G H + TIL DS ++H+F+ + V + GGV+++
Sbjct: 395 VII---GTFLIHSIPATILFDSGASHLFIFVPFVGRNQLGVERLRNPLLITTPGGVMTAK 451
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
VP+ QG F D LL D++LG L I+ D ++ T+ ++G
Sbjct: 452 YYSPAVPIEIQGIPFPSDLILLYTKNLDVILGMNLLAQFQGIV-DCARRTVTL-YRGPKQ 509
Query: 447 QLTGYDSLPPALANHGEINQLLLQE 471
+ + PP +++Q+ L E
Sbjct: 510 PVVFF--APPTSVGSSKLHQIGLSE 532
>gi|38346421|emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa Japonica Group]
Length = 1616
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 441 QQPAKREQGNKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQNNSAVPAS- 488
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A + V +
Sbjct: 489 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHEMEVEDLRR 548
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 549 PLMVSTPSNQALSLQRSPSVKIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCA 608
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 609 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQITLEE 643
>gi|147843772|emb|CAN79864.1| hypothetical protein VITISV_038293 [Vitis vinifera]
Length = 1110
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+L+F SG +PT + +Q+ +L +SLA HL+
Sbjct: 89 KLEFPRYSGNDPTEWFNKVDQFFEYQGILAAQKVSLASFHLE-----------------E 131
Query: 139 WAQFKRAL--VTQFGTFEDG----DAVGT--QNLPESFFISCFLSGLREDIKIGVQMLKP 190
F AL V Q G+ +D + +G Q + + F+ GL+ +I G++M KP
Sbjct: 132 CEDFDEALSRVKQMGSLQDYQREFEKLGNRGQGWTQKALVGTFMGGLKSEIADGIRMFKP 191
Query: 191 ASLLQTFELARFQEE 205
SL + LAR +++
Sbjct: 192 KSLKEAISLARMRDD 206
>gi|13699784|gb|AAK38383.1|AC079028_7 hypothetical protein [Arabidopsis thaliana]
Length = 712
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 11/152 (7%)
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSL-- 359
QA+ +P E++ K + N + G L+ G+ +L DS +TH F++ +
Sbjct: 239 QAKRAAVVPRVYELTKKT---SEASNFNAISGTLQIGGIETMVLFDSGATHSFVSPRMIG 295
Query: 360 -AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLG 418
K P T V A G + G+ +PV+ +G + +D ++P+ +++LG
Sbjct: 296 KGKFQKEPRMDPTV--VNAAGGQAMIPEGQVCGIPVSIKGIEMPVDLIIIPLEKHEVILG 353
Query: 419 AEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
+WL A L + + ++F +G ++ G
Sbjct: 354 MDWLGKYKATL-NCHRGKVRFEREGGKLEFQG 384
>gi|108862586|gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1751
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGHRC-KAPQLLLLDADIEDKDEQAEALEELPETLEV 317
+Q +R +G +CFNC + PGH K P+ + A + + AEA ++ P+ +
Sbjct: 590 QQPAKREQGSKSVVCFNCGD---PGHYADKCPKPRRVKARV-NHVAAAEA-QDAPDVI-- 642
Query: 318 SLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTV 377
G N++ T+L DS +TH FL+ S A +G V + +
Sbjct: 643 -----LGTFLVNSVH---------ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVS 688
Query: 378 ADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLT 436
S + V + QG F + LL D++LG +WL R G I K+T
Sbjct: 689 TPSNQALSLQRSPSVRIEIQGIPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVT 748
Query: 437 M 437
+
Sbjct: 749 L 749
>gi|46485886|gb|AAS98511.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1678
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 580 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 639
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453
+ LL D++LG +WL R G I K+T+ ++ G+ V + S
Sbjct: 640 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLN-SYDGRVVTVHALSS 691
>gi|34015262|gb|AAQ56454.1| putative polyprotein [Oryza sativa Japonica Group]
gi|34015280|gb|AAQ56471.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1735
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 560 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVPAS- 607
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 608 KARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRH 667
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 668 PLMVSTPSNQALSLQRSPSVRIEIKGVPFVANLILLESKDLDVILGMDWLARHRGVIDCA 727
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 728 NRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 762
>gi|77555315|gb|ABA98111.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 18/189 (9%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEA-------LEELPETLEVS----- 318
G CFNC E ++C P + A L P+T +
Sbjct: 289 GSCFNCGEYGHFANKCPHPNKTPIRTGTNATAIHGTATPAAGRSLFRTPQTNRTATGFGR 348
Query: 319 -----LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQF 373
++A Q + +L V +L DS ++H F++ ++Q+ Q
Sbjct: 349 GQVNHVRAEEAQEDQGVLMGMFSLNSTPVKVLFDSGASHSFISLKASQQHNLTRVKLRQP 408
Query: 374 QVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDF 432
+ + GG I+ C +VP+ + F + +L D++LG +WL + G I
Sbjct: 409 MLVHSPGGEITVDTACINVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRR 468
Query: 433 SKLTMQFTW 441
++T+ W
Sbjct: 469 REVTLTTPW 477
>gi|77555521|gb|ABA98317.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 583
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 19/207 (9%)
Query: 240 SSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIE 299
S+ P L P PP + A++ R G C+NC E +C P+
Sbjct: 336 SAAPRLPMAPAQPTPP----TQAKKETRAKPGSCYNCGEHGHFADKCPKPRR------AG 385
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
+ QA E +V+ + + G P N++ T+L DS +TH F++
Sbjct: 386 PRFSQARVNHASAEEAQVAPEVVLGTFPVNSI---------PATVLFDSGATHSFISKRF 436
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+G + G ++ V + QF + LL ++LG
Sbjct: 437 LGIHGVRKEELSTPMRVHTPGNSSTTVSYSPSVLIEIHKSQFLANLILLESKDLHVILGM 496
Query: 420 EWLRSLGAILWDFSKLTMQFTWKGQTV 446
+WL ++ ++ KG+TV
Sbjct: 497 DWLTKFKGVIDCANRTVTLINEKGETV 523
>gi|116317830|emb|CAH65865.1| OSIGBa0132I10.1 [Oryza sativa Indica Group]
Length = 1670
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 42/193 (21%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLL------- 292
GP P P +Q +R +G +CFNC + PGH +C P+ +
Sbjct: 512 GPRPVAAP------TQQQPAKREQGSKPVVCFNCGD---PGHYANKCPKPRRVKVVPVQN 562
Query: 293 ---LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSS 349
+L + A ++ P+ + G P N++ T+L DS
Sbjct: 563 NSTVLASKARVNHVAAAEAQDAPDVI-------LGTFPVNSVL---------ATVLFDSG 606
Query: 350 STHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLP 409
+TH FL+ S A +G V + + S + V + +G F + LL
Sbjct: 607 ATHSFLSVSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLE 666
Query: 410 VSGCDIVLGAEWL 422
D++LG +WL
Sbjct: 667 SKDLDVILGMDWL 679
>gi|77551789|gb|ABA94586.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1710
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++++ + + + + GG I+ S C VP+ + F
Sbjct: 755 VKVLFDSGASHSFISLKASQKHNLTLVGLRKPMIVHSPGGEITMSHACIDVPIRLRDVVF 814
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL + G I ++T+ W
Sbjct: 815 PSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPW 855
>gi|62734395|gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550471|gb|ABA93268.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1506
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
+T+L DS +TH F+++ AKQ + + G + + C V + G +F
Sbjct: 416 LTVLFDSGATHSFMSTLKAKQLDLKTEFLSDAMRIQSPGSTMVTKLLCKGVELIIDGVKF 475
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLT 449
+ LL G +++LG +WL + G I +T++ T GQ V+ T
Sbjct: 476 KANLILLDTLGLNVILGMDWLTKHEGTIDCAHRTVTLRST-DGQFVRFT 523
>gi|62734186|gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77548986|gb|ABA91783.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1760
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 24/197 (12%)
Query: 262 AEQTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEV 317
A+ E AK G CFNC E +C P+ + A + AE + PE +
Sbjct: 596 AQAKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHVS--AEEAQTAPEVV-- 651
Query: 318 SLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTV 377
G P N++ T+L DS +TH F++ +G +
Sbjct: 652 -----LGTFPVNSI---------PATVLFDSGATHSFISKKFVGMHGLIREELSTLMRVH 697
Query: 378 ADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTM 437
G +S + + Q F + LL D++LG +WL ++ D + T+
Sbjct: 698 TPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTV 756
Query: 438 QFT-WKGQTVQLTGYDS 453
T KG+TV DS
Sbjct: 757 TLTNEKGETVVYKSPDS 773
>gi|46485871|gb|AAS98496.1| unknown protein [Oryza sativa Japonica Group]
gi|50300521|gb|AAT73663.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 915
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 22/129 (17%)
Query: 164 LPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRP 223
L E + SCF+ GLR DIK V KP LL+++ A+ E+ A +MS+
Sbjct: 104 LQEQYITSCFIGGLRNDIKHDVCGQKPQVLLESYRYAKTYEKAALAKKATYGVNRNMSKG 163
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPG 283
N+ +QP G ER+ + + C E + P
Sbjct: 164 ----FNAGGQGRNQTNRNQPRNEG------------------ERKEEKNYWFCKEPWLPK 201
Query: 284 HRCKAPQLL 292
H+CK Q L
Sbjct: 202 HQCKVKQAL 210
>gi|62733811|gb|AAX95920.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734057|gb|AAX96166.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550628|gb|ABA93425.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 919
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 24/221 (10%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ ++ Q+ + P
Sbjct: 263 STQQQPAKREQGRKPVVCFNCGD---PGHYADKCPKPR------RVKVVPAQSNSTAPAP 313
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + A + + + T+L DS +TH FL+ S A +G V +
Sbjct: 314 KARVNHVAAAEAQDAPDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 373
Query: 373 -FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILW 430
V+ +S S V + QG F + LL D++LG +WL R G I
Sbjct: 374 PLMVSTPSNQALSLQRSLS-VRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDC 432
Query: 431 DFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ + G+ V + S + +NQ+ L+E
Sbjct: 433 ANRKVTLT-SNDGRVVTVHALSS----ESLRSRLNQITLEE 468
>gi|38344348|emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa Japonica Group]
Length = 1653
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 23/180 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 551 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEV-------VLGTFP 601
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + G SS
Sbjct: 602 VNSI---------PATVLFDSGATHSFISKKFVGVHGLIREELSTPMRVHTPGNSSSSVQ 652
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
+ + QG F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 653 FSPSITIEIQGSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 711
>gi|356537579|ref|XP_003537304.1| PREDICTED: uncharacterized protein LOC100816964 [Glycine max]
Length = 751
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 286 CKAPQLLLLDADIEDKDEQA---------EALEELPETLEVSLKALTGATPQNTMRLKGN 336
C Q LLL D ED++ + EA+ L +S AL G++ TM+
Sbjct: 328 CLNRQYLLLQMD-EDENVEVQPDPPPRIEEAMGNLNLDHHLSYNALKGSSDLGTMKFSST 386
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
+ V IL+DS S+ FL +A P+ + FQV V +G + + G
Sbjct: 387 INGMVVQILLDSGSSDNFLQPRIANCLKLPIEPASNFQVLVGNGNSLVAEG 437
>gi|54291836|gb|AAV32204.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1142
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 27/182 (14%)
Query: 271 GLCFNCDE--QFK---PGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
G CFNC E F P RC P+ + QA E + + + + G
Sbjct: 127 GSCFNCGELGHFADKCPKPRCAGPRFV-----------QARVNHASVEEAQAAPEVVLGT 175
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
P N++ T+L DS +TH F++ +G + G +S
Sbjct: 176 FPVNSI---------PATVLFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTS 226
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQ 444
V + Q F + LL D++LG +WL ++ D + T+ T KG+
Sbjct: 227 VSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGE 285
Query: 445 TV 446
TV
Sbjct: 286 TV 287
>gi|356537309|ref|XP_003537171.1| PREDICTED: uncharacterized protein LOC100792123 [Glycine max]
Length = 146
Score = 44.7 bits (104), Expect = 0.12, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 59 NQQPEPAGRIGGALVQPRHIRLDFLVLSGENPT-SLIFRCEQYQRLAALLETDVLSLAIG 117
N++ P G ++ R +L+ + GE+ S I + E + ++ +LE + + + +
Sbjct: 18 NKEETPKNHTGEGKIK-RWRKLEIPIYDGESDVYSWINKLECFFQMRDILEEEKIQVVMV 76
Query: 118 HLDGDAVPWYHWLEQTMGNMTWAQFKRALVTQFGT 152
LDG A+ W+ W E ++ W FK ++ +F T
Sbjct: 77 TLDGKALSWFQWWETCNSDIGWGDFKVVILERFQT 111
>gi|38605839|emb|CAE02919.3| OSJNBb0108J11.11 [Oryza sativa Japonica Group]
Length = 815
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
+A+G V+S + + +QG F+ F +L ++ D +LG +WL + D+ + +
Sbjct: 1 MANGAVLSCTAELPDCVWTTQGHVFYTTFKILALTNYDAILGMDWLMQCSPMSVDWVQKS 60
Query: 437 MQFTWKGQTVQLTG 450
+ W+G++V L G
Sbjct: 61 LVICWQGKSVTLQG 74
>gi|34015342|gb|AAQ56531.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1289
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 298 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVPAS- 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRH 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPRNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHRGVIDCA 465
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ + G+ V + S + +NQ+ L+E
Sbjct: 466 NRKVTLT-SNDGRVVTVHALSS----ESLRSRLNQITLEE 500
>gi|39545597|emb|CAE02841.3| OSJNBa0014F04.7 [Oryza sativa Japonica Group]
Length = 1625
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 28/223 (12%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ + K A++ +P
Sbjct: 605 STQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVP 653
Query: 313 ETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + + A Q+ + G + V T+L DS +TH F++ S A G V
Sbjct: 654 AS-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFVSMSFAGNDGMEVED 712
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + S + V + QG F + LL D++LG +WL R G I
Sbjct: 713 LRRHLMVSTPSNQALSLQRSPFVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVI 772
Query: 429 LWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 773 DCANRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 810
>gi|53981941|gb|AAV25059.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53982136|gb|AAV25232.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 25/211 (11%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDA 296
QP+ P P + P + A+ + E AK G CFNC E +C P+ + A
Sbjct: 578 QPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQA 637
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ AE + PE + G P N++ T+L DS +TH F++
Sbjct: 638 RVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFIS 679
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDI 415
+G + + V G S+S + S + + Q F + LL D+
Sbjct: 680 KKFLGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDV 738
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+LG +WL ++ S+ KG+TV
Sbjct: 739 ILGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|38569190|emb|CAE02978.3| OSJNBa0086B14.15 [Oryza sativa Japonica Group]
Length = 1516
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 99/274 (36%), Gaps = 68/274 (24%)
Query: 186 QMLKPASLL----QTFELARFQEEYAAVS---------NRRIPPRPSMSRPSPPLLNSSP 232
Q+ P++L+ + + L+ F +Y S N PP + ++ PP +++ P
Sbjct: 277 QLGGPSTLIVCQHRPYHLSNFNNDYNGGSHNNSKQHNHNSTPPPLMAPAQSDPPAVSAQP 336
Query: 233 TITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRC-----K 287
K G +P G CFNC + +C
Sbjct: 337 VQPKKGAVGKP---------------------------GPCFNCGKHDHFAGKCPKLNRT 369
Query: 288 APQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILID 347
P+ + QA A E + + + + G P N+ + T+L D
Sbjct: 370 GPRFI-----------QACANHVSAEEAQAAPEVVLGTFPVNS---------YPATVLFD 409
Query: 348 SSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFL 407
S ++H F++ A +G V G + ++ C V + + F + L
Sbjct: 410 SGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTAHYCPSVTIEIKRSPFLSNLIL 469
Query: 408 LPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT 440
L D++LG +WL R+ G I D + T+ T
Sbjct: 470 LESKDLDVILGMDWLTRNKGVI--DCASRTITLT 501
>gi|301615962|ref|XP_002937446.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1553
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 28/223 (12%)
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRR-LSVAEQTERRAKGLCFNCDEQFKP 282
SP +L +P ++ S+ P P + R LS E+ RR LC C +
Sbjct: 250 SPWVLPKAPIFPRSTPVPSTSVAEPEPMQIGLIRSPLSSEERARRRQHNLCLYCGQSGHF 309
Query: 283 GHRC--KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKH 340
C + LL+ D +L P +L+ +AL
Sbjct: 310 LRSCPNRPSSKLLMSKFPGTHDTSDVSLITFPFSLQCPREALQ----------------- 352
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTT-TQFQVTVADGGVISSSG-KCSHVPVNSQG 398
V +LIDS + F++ + KQ+ P+ + ADG ISS K +P++ +
Sbjct: 353 -VQVLIDSGACGCFMDLAFVKQHLIPLKVKPCPVLIKTADGSPISSGPVKYETLPLSIKL 411
Query: 399 FQFHLDFFLLPVSGCDI---VLGAEWLRSLGAIL-WDFSKLTM 437
F+ H +F V I +LG WL++ ++ W KLT
Sbjct: 412 FE-HAEFLSFDVVASPIFPVILGVPWLKTHNPVIDWRSGKLTF 453
>gi|78708045|gb|ABB47020.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 989
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 92 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTIPAS- 139
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 140 KARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 199
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 200 PLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 259
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
++T+ G+ V + S + ++NQ+ L+E
Sbjct: 260 NRRVTLTSN-DGRVVTVHALSS----ESLRSKLNQITLEE 294
>gi|77554505|gb|ABA97301.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1447
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 28/224 (12%)
Query: 259 LSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEEL 311
+S +Q +R +G +CFNC + PGH +C P+ + K A++
Sbjct: 293 VSTQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTA 341
Query: 312 PETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVT 368
P + + + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 342 PAS-KARINHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVE 400
Query: 369 TTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGA 427
+ + S + V + +G F + LL D++LG +WL R G
Sbjct: 401 DLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLEPKDLDVILGMDWLARHKGV 460
Query: 428 ILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
I K+T+ G+ V + S + +NQ+ L+E
Sbjct: 461 IDCANRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 499
>gi|34015248|gb|AAQ56440.1| putative polyprotein [Oryza sativa Japonica Group]
gi|34015300|gb|AAQ56491.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1222
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 26/201 (12%)
Query: 238 GGSSQPSLLGPPPPGLPPFRR-----LSVAEQTERRAKGL---CFNCDEQFKPGHRC-KA 288
G S Q + PPP + P + + +EQ ++ + G CFNC K GH K
Sbjct: 123 GSSKQHNHNSTPPPLMAPTQSDPPAMSAQSEQLKKESAGKPRPCFNCG---KHGHFAGKY 179
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDS 348
P+ + EE EV L G P N+ T+L DS
Sbjct: 180 PKPKRAGPRFVQACVNHASAEEAQAAPEVVL----GTFPVNSF---------PATVLFDS 226
Query: 349 SSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLL 408
++H F++ +A +G V G ++++ C V + + F + LL
Sbjct: 227 GASHSFISKRIAGTHGLSVVELKILMRVHTPGNDMNTTHYCPSVTIEIKRSPFLSNLILL 286
Query: 409 PVSGCDIVLGAEWL-RSLGAI 428
D++LG +WL R G I
Sbjct: 287 ESKDLDVILGMDWLTRHKGVI 307
>gi|38343985|emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa Japonica Group]
gi|38343993|emb|CAD40358.2| OSJNBa0093P23.4 [Oryza sativa Japonica Group]
Length = 1543
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 372 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 419
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S +G V +
Sbjct: 420 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRR 479
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 480 PLMVSTPSNQALSLQRSPSVRIEIQGIPFLANLILLESKDLDVILGMDWLARHKGVIDCA 539
Query: 432 FSKLTMQFTWKGQTVQLTGYDS 453
K+T+ GQ V + S
Sbjct: 540 NRKVTLTSN-DGQVVTVHALSS 560
>gi|38346366|emb|CAE04203.2| OSJNBa0011E07.12 [Oryza sativa Japonica Group]
Length = 1473
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 23/177 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P T
Sbjct: 298 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVP-TS 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPSDQTLSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVI 462
>gi|18657010|gb|AAL78097.1|AC093568_7 Putative polyprotein [Oryza sativa]
gi|31430586|gb|AAP52480.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K + +P +
Sbjct: 298 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPVQNNSAVPAS- 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 465
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ ++ G+ V + S + +NQ+ L+E
Sbjct: 466 NRKVTLN-SYDGRVVTVHALSS----ESLRSRLNQVTLEE 500
>gi|38345527|emb|CAD41297.2| OSJNBa0020J04.2 [Oryza sativa Japonica Group]
Length = 1537
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++++ + + + + GG I+ S C VP+ + F
Sbjct: 312 VKVLFDSGASHSFISLKASQKHNLTLVGLRKPMIVHSPGGEITVSHACIDVPIRLRDVVF 371
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL ++ G I ++T+ W
Sbjct: 372 PSNLMILIPQTLDVILGMDWLTKNRGVIDCGRREVTLTTPW 412
>gi|301605579|ref|XP_002932346.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Xenopus (Silurana) tropicalis]
Length = 1542
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 28/223 (12%)
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRR-LSVAEQTERRAKGLCFNCDEQFKP 282
SP +L +P ++ S+ P P + R LS E+ RR LC C +
Sbjct: 249 SPWVLPKAPIFPRSTPVPSTSVAEPEPMQIGLIRSPLSSEERARRRQHNLCLYCGQSGHF 308
Query: 283 GHRC--KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKH 340
C + LL+ D +L P +L+ +AL
Sbjct: 309 LRSCPNRPSSKLLMSKFPGTHDTSDVSLITFPFSLQCPREALQ----------------- 351
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTT-TQFQVTVADGGVISSSG-KCSHVPVNSQG 398
V +LIDS + F++ + KQ+ P+ + ADG ISS K +P++ +
Sbjct: 352 -VQVLIDSGACGCFMDLAFVKQHLIPLKVKPCPVLIKTADGSPISSGPVKYETLPLSIKL 410
Query: 399 FQFHLDFFLLPVSGCDI---VLGAEWLRSLGAIL-WDFSKLTM 437
F+ H +F V I +LG WL++ ++ W KLT
Sbjct: 411 FE-HAEFLSFDVVASPIFPVILGVPWLKTHNPVIDWRSGKLTF 452
>gi|116309169|emb|CAH66267.1| OSIGBa0136B09.3 [Oryza sativa Indica Group]
Length = 1469
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 298 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S +G V +
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRR 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPSNQALSLQRSPSVRIEIQGIPFLANLILLESKDLDVILGMDWLARHKGVIDCA 465
Query: 432 FSKLTMQFTWKGQTVQLTGYDS 453
K+T+ GQ V + S
Sbjct: 466 NRKVTLTSN-DGQVVTVHALSS 486
>gi|108863004|gb|ABG22100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1620
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 72/390 (18%), Positives = 142/390 (36%), Gaps = 59/390 (15%)
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWL----EQTMGNMTWAQFKRALVTQFGTFEDGDA 158
L + E D + A+ L+G A W+ E+ G TW +F A F
Sbjct: 318 LVRMREADKVIFAVNQLEGPAGDWWDTYKEAREEDAGEPTWEEFTAAFRENFV------P 371
Query: 159 VGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVS-------- 210
+ ++ F LR+ + L + L + + +E +
Sbjct: 372 AAVMRMKKNEF-----RRLRQGNTTVQEYLNRFTQLARYAIGDLADEEEKIDKLENDQRT 426
Query: 211 ---NRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTER 267
NR+ R +M+RP + T +G +P+++ P P VA Q
Sbjct: 427 VEHNRK--RRLAMNRPPQGVPQRLKGATSSG--RKPTIVATNRPAAPSNFNRPVAVQNRT 482
Query: 268 RAKGL----------CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEA-------LEE 310
L CFNC E + C P+ + + A L +
Sbjct: 483 PTPTLAAPGVKKNVDCFNCGEYGHYANTCPHPRKTPVRTGANAMTVRGTATPAVGRGLFK 542
Query: 311 LPETLEVS----------LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA 360
P+T + ++A + + ++ V +L DS ++H F++ +
Sbjct: 543 TPQTNRTATGFGRGQVNHVRAEEAQEDKGVLMGMFSINSSPVKVLFDSGASHSFISLEAS 602
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+++ + + + + GG I+ S C ++P+ + F + ++ D++LG +
Sbjct: 603 QKHNLTLVGLRKPMIVHSPGGEITVSHACINIPIRLRDVVFPSNLIVVIPQTLDVILGMD 662
Query: 421 WL-RSLGAILWDFSKLTMQFTWKGQTVQLT 449
WL ++ G I ++T+ W G ++ T
Sbjct: 663 WLTKNRGVIDCRRREVTLTTPW-GSDIRAT 691
>gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430814|gb|AAP52680.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1796
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 23/180 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 628 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQTAPEVV-------LGTFP 678
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG + G +S
Sbjct: 679 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSVS 729
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 730 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 788
>gi|20042994|gb|AAM08802.1|AC090486_12 putative retroelement [Oryza sativa Japonica Group]
gi|31431155|gb|AAP52977.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1594
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + + S + V + QG F
Sbjct: 637 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQVLSLRRSPSVRIEIQGVPF 696
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+ LL D++LG +WL R G I K+T+
Sbjct: 697 LANLILLESKDLDVILGMDWLARYKGVINCANRKVTL 733
>gi|90265167|emb|CAH67735.1| H0522A01.6 [Oryza sativa Indica Group]
gi|116310748|emb|CAH67543.1| H0425E08.11 [Oryza sativa Indica Group]
Length = 1475
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 30/221 (13%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAP---QLLLLDADIEDKDEQAEALEELP 312
+Q +R +G +CFNC + PGH +C P +++ + ++ +A
Sbjct: 300 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRVKVVPVQSNSVVPVSKARVNHVAA 356
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + G P N++ T+L DS +TH FL+ S A +G V +
Sbjct: 357 AEAQDAPDVILGTFPVNSV---------PATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 407
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 408 PLMVSTPSNQALSLQRSPAVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 467
Query: 432 FSKLTMQFT-WKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ + TVQ +SL +NQ+ L+E
Sbjct: 468 NRKVTLTSNDGRVVTVQALSSESL------RTRLNQITLEE 502
>gi|18378611|gb|AAL68643.1|AF458767_1 polyprotein [Oryza sativa Japonica Group]
Length = 775
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLT 436
+A+G V+S + + +QG F+ F +L ++ D +LG +WL + D+ + +
Sbjct: 1 MANGAVLSCTAELPDCVWTTQGHVFYTTFKILALTNYDAILGMDWLMQCSPMSVDWVQKS 60
Query: 437 MQFTWKGQTVQLTG 450
+ W+G++V L G
Sbjct: 61 LVICWQGKSVTLQG 74
>gi|77555389|gb|ABA98185.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1699
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 601 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 660
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTVQLTGYDSLPPALA 459
+ LL D++LG +WL + G I K+T+ + TV +SL P+L
Sbjct: 661 LANLILLESKDLDVILGMDWLAKHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRPSL- 719
Query: 460 NHGEINQLLLQE 471
NQ+ L+E
Sbjct: 720 -----NQITLEE 726
>gi|77549283|gb|ABA92080.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1529
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 574 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIEIQGVPF 633
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 634 LANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSN-DGRVVTVYALSS----ESL 688
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 689 RSRLNQITLEE 699
>gi|21741860|emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa Japonica Group]
Length = 1470
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++++ + + + + GG I+ S C VP+ + F
Sbjct: 377 VKVLFDSGASHSFISLKASQKHNLTLVGLRKPMIVHSPGGEITVSHACIDVPIRLRDVVF 436
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL + G I ++T+ W
Sbjct: 437 PSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPW 477
>gi|326533622|dbj|BAK05342.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 162
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 301 KDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA 360
K E+AE + P+ +S +AL GA M L G +++ V +L+DS S+H F+NSSLA
Sbjct: 96 KVERAETVPSEPDCCVLSKEALEGAESPMIMCLHGWVQQCEVLMLVDSGSSHSFINSSLA 155
Query: 361 KQ 362
Q
Sbjct: 156 HQ 157
>gi|224070993|ref|XP_002303320.1| predicted protein [Populus trichocarpa]
gi|222840752|gb|EEE78299.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 44.3 bits (103), Expect = 0.15, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLL 228
++ F++GL+EDIK +++LKP +L+ F+ A++QEE V R+ + M+RP+ +
Sbjct: 14 WLRSFINGLKEDIKPMLKILKPGTLMTNFDQAKWQEESNNVLARK---KKFMARPAAEVQ 70
Query: 229 NSSP 232
P
Sbjct: 71 VGRP 74
>gi|116310820|emb|CAH67609.1| OSIGBa0145G11.8 [Oryza sativa Indica Group]
Length = 1470
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++++ + + + + GG I+ S C VP+ + F
Sbjct: 377 VKVLFDSGASHSFISLKASQKHNLTLVGLRKPMIVHSPGGEITVSHACIDVPIRLRDVVF 436
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL + G I ++T+ W
Sbjct: 437 PSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPW 477
>gi|21672026|gb|AAM74388.1|AC119149_3 Putative retroelement [Oryza sativa Japonica Group]
Length = 1458
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 23/187 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 347 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 397
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ TIL DS +TH F++ +G + G +S
Sbjct: 398 VNSI---------PATILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSVS 448
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 449 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 507
Query: 447 QLTGYDS 453
DS
Sbjct: 508 VYKSPDS 514
>gi|62733387|gb|AAX95504.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734599|gb|AAX96708.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550234|gb|ABA93031.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 504
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 25/208 (12%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C PQ ++ Q+ + + + A P
Sbjct: 270 GVCFNCGD---PGHYSDKCPKPQ------RVKVVPAQSNSTAPASKARVNHVAAEAQGAP 320
Query: 328 QNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 321 HVIL---GTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 377
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKG 443
+ V + Q F + LL D++LG +WL R G I K+T+ +
Sbjct: 378 LQRSPSVRIEIQEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRV 437
Query: 444 QTVQLTGYDSLPPALANHGEINQLLLQE 471
TV +SL +NQ+ L+E
Sbjct: 438 VTVHALSSESL------RSRLNQMTLEE 459
>gi|255631752|gb|ACU16243.1| unknown [Glycine max]
Length = 141
Score = 44.3 bits (103), Expect = 0.16, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 76 RHIRLDFLVLSGENPT-SLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTM 134
R +L+ + GE+ S I + E + ++ +LE + + A+ LDG A+ W+ W E
Sbjct: 35 RWRKLEISIYDGESDAYSWINKLECFFQMRDILEEEKIQAAMVALDGKALSWFQWWETCN 94
Query: 135 GNMTWAQFKRALVTQFGT 152
++ W+ FK A++ +F T
Sbjct: 95 SDIGWSDFKVAILERFQT 112
>gi|358382901|gb|EHK20571.1| hypothetical protein TRIVIDRAFT_49174 [Trichoderma virens Gv29-8]
Length = 377
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 332 RLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ--FQVTVADGGVISSSGKC 389
RL+G L H T L D+ S +FLN A++ G + + + +V +ADG +SG
Sbjct: 160 RLRGYLNGHLATALPDTGSDAMFLNGEFARKLGLDIDSNVRNLVEVELADGSTTMTSGIV 219
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
V +F++L DI+L +L
Sbjct: 220 RDVQWKVGKTTVQCNFYVLEDLCADIILSNTYL 252
>gi|38346034|emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa Japonica Group]
Length = 1470
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 18/189 (9%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEA-------LEELPETLEVS----- 318
G CFNC E ++C P + A L P+T +
Sbjct: 289 GSCFNCGEYGHFANKCPHPNKTPIRTGANATAIHGTATPAAGRGLFRTPQTNRTATGFGR 348
Query: 319 -----LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQF 373
++A Q + +L V +L DS ++H F++ ++Q+ Q
Sbjct: 349 GQVNHVRAEEAQEDQGVLMGMFSLNSTPVKVLFDSGASHSFISLKASQQHNLTRVKLRQP 408
Query: 374 QVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDF 432
+ + GG I+ C VP+ + F + +L D++LG +WL + G I
Sbjct: 409 MLVHSPGGEIAVDTACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRR 468
Query: 433 SKLTMQFTW 441
++T+ W
Sbjct: 469 REVTLTTPW 477
>gi|62733260|gb|AAX95377.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62733997|gb|AAX96106.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550108|gb|ABA92905.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1261
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 78/204 (38%), Gaps = 18/204 (8%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
CFNC E +C P+L QA A E + + + + G P N++
Sbjct: 335 CFNCGEHGHFADKC--PKLRRAGPRFA----QARANHASAEEAQAAPEVVLGTFPINSI- 387
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
T+L DS +TH F++ +G + G +S V
Sbjct: 388 --------PTTVLFDSGATHSFISKKFVGMHGLRKEEISTLMRVHTPGNSSTSISYSPSV 439
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTVQLTGY 451
+ +F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 440 LIEIHRSRFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETVVYKSL 498
Query: 452 DSLPPALA-NHGEINQLLLQEKQG 474
S ++ N E+ L+ E++
Sbjct: 499 VSPKQGISLNQIEVENLVATEEKS 522
>gi|22725934|gb|AAN04944.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1078
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 593 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 652
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ + G+ V + S +
Sbjct: 653 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLT-SNDGRVVTVHALSS----ESL 707
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 708 RSRLNQITLEE 718
>gi|62733803|gb|AAX95912.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549676|gb|ABA92473.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1337
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC E PGH +C P+ + K A++ P + + + + A
Sbjct: 310 GVCFNCGE---PGHYSDKCPKPRRM--------KVVPAQSNSTAPAS-KARVNHVAAAEA 357
Query: 328 QNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
Q + G + V T+L DS +TH FL+ S A +G V + +
Sbjct: 358 QGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQAL 417
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
S + V + Q F + LL D++LG +WL R G I K+T+
Sbjct: 418 SLQRSPSVRIEIQEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTL 471
>gi|56155209|gb|AAV80394.1| polyprotein [Hordeum vulgare subsp. vulgare]
Length = 1486
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 74/366 (20%), Positives = 136/366 (37%), Gaps = 62/366 (16%)
Query: 110 DVLSLAIGHLDGDAVPWYHWLEQTMGN--MTWAQFKRALVTQF----------------- 150
D + A L G A W+ L+ + G M+W +F R + +
Sbjct: 117 DYVKFATFQLKGQASIWWQHLKDSRGGRVMSWDEFCRDFRSHYIPSSFVEEMREKFRRLK 176
Query: 151 ----------GTFEDGDAVGTQNLPE-SFFISCFLSGLREDIKIGVQMLKPASLLQTFEL 199
F + Q++P+ I F GL+ED+++ + + P + + L
Sbjct: 177 QGNNSVYKYNVEFHELARYALQDVPDQKSKIYQFRGGLKEDLQLALALHDPEEFDKFYNL 236
Query: 200 ---------------ARFQEEYAAVSNR-RIPPRPSMSRPSPPLLNSSPTITKTGGSSQP 243
RF++ ++ + + R +S P PP + P + GSS+P
Sbjct: 237 ALRAEAALLRVENSKKRFRDSSSSSTQVVQKQQRFWVSSPPPPRHSQQPKHSGGRGSSRP 296
Query: 244 SLLGPPPPGLPPFRRLSVAE----QTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIE 299
P PG + Q + A C C ++ ++C + QL L
Sbjct: 297 -----PNPGFQQRYQQQKQGPPQIQFRQPADVTCHKCGQKGHYANKCTS-QLRLPPPPPG 350
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNL--KKHGVTILIDSSSTHIFLN 356
A ++ P V++ + A +N+ + GNL +L DS ++H FL+
Sbjct: 351 KPPSNA-LVKFNPRLARVNM--VNAAEAENSSDVIMGNLLVNDFPAKVLFDSGASHSFLS 407
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
A + + + V+ G ++SS V + + F ++L S D++
Sbjct: 408 YPFAAKNDIHLQELARSFDIVSPGMLMSSRWFAPDVSIKMDNYAFLASPYVLGKSDIDLI 467
Query: 417 LGAEWL 422
LG +WL
Sbjct: 468 LGMDWL 473
>gi|5042447|gb|AAD38284.1|AC007789_10 putative polyprotein [Oryza sativa Japonica Group]
Length = 1220
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 20/202 (9%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAK-GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAE 306
P PP P SV + E AK G CFNC E +C P+ + QA
Sbjct: 329 PRPPMAPAQSAPSVQAKKETGAKPGSCFNCGELGHFADKCPKPR------RAGPRFVQAR 382
Query: 307 ALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCP 366
E + + + + G P N++ T+L DS + H F+ +G
Sbjct: 383 VNHASTEEAQAAPEVVLGTFPVNSI---------PATVLFDSGAMHSFIYKKFVGMHGL- 432
Query: 367 VTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSL 425
+ + V G S+S + S V + Q F + LL D++LG +WL
Sbjct: 433 IREELSTPMRVHTPGNSSTSVQFSPSVTIEIQRSPFLANLILLESKDLDVILGMDWLTKF 492
Query: 426 GAILWDFSKLTMQF-TWKGQTV 446
++ D + T+ KG+TV
Sbjct: 493 KGVI-DCANCTVTLINEKGETV 513
>gi|38344376|emb|CAD41428.2| OSJNBb0032E06.10 [Oryza sativa Japonica Group]
Length = 2120
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 25/221 (11%)
Query: 235 TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLL 294
+ G +S+P + P G P + + + G CFNC E +C P+
Sbjct: 563 SNRGAASRPPM-APAQSGQPAQAKKEIGAKP-----GSCFNCGELGHFADKCPKPR---- 612
Query: 295 DADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
+ QA E + + + + G P N++ T+L DS +TH F
Sbjct: 613 --SAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSI---------PATVLFDSGATHSF 661
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGC 413
++ +G + + V G S+S + S + + Q F + LL
Sbjct: 662 ISKKFVGMHGF-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDL 720
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTVQLTGYDS 453
D++LG +WL ++ D + T+ T KG+TV DS
Sbjct: 721 DVILGMDWLTKFKGVI-DCANRTVTLTNEKGETVVYKSPDS 760
>gi|77552427|gb|ABA95224.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1570
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 25/211 (11%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAE-QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDA 296
QP+ P P + P + A+ + E AK G CFNC E +C P+ + A
Sbjct: 578 QPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQA 637
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ A+ + PE + G P N++ T+L DS +TH F++
Sbjct: 638 RVNHAS--AQEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSFIS 679
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDI 415
+G + + V G S+S + S + + Q F + LL D+
Sbjct: 680 KKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDV 738
Query: 416 VLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+LG +WL ++ S+ KG+TV
Sbjct: 739 ILGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|116311087|emb|CAH68016.1| H0807C06-H0308C08.3 [Oryza sativa Indica Group]
Length = 1521
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 91/249 (36%), Gaps = 56/249 (22%)
Query: 203 QEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVA 262
Q + + NR PRP M+ P+ LG P P A
Sbjct: 316 QNHHGSQPNRGAAPRPPMT---------------------PAQLGQPAP----------A 344
Query: 263 EQTERRAKGLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSL 319
++ G CFNC E +C P+ + A + AE + PE +
Sbjct: 345 KKETGVKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV---- 398
Query: 320 KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG-CPVTTTTQFQVTVA 378
G P N++ T+L DS +TH F++ +G +T +V +
Sbjct: 399 ---LGTFPVNSI---------PATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHIP 446
Query: 379 DGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
G +S + + Q F + LL D++LG +WL ++ D + T+
Sbjct: 447 -GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVT 504
Query: 439 FT-WKGQTV 446
T KG+TV
Sbjct: 505 LTNGKGETV 513
>gi|110288865|gb|ABB47143.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1020
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 593 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 652
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ + G+ V + S +
Sbjct: 653 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLT-SNDGRVVTVHALSS----ESL 707
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 708 RSRLNQITLEE 718
>gi|77552225|gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 24/207 (11%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLL---DADIEDKDEQAEALEELPETLEVSLKALTGA 325
+CFNC + PGH +C P+ + + ++ +A + + + G
Sbjct: 311 VCFNCGD---PGHYADKCPKPRRVKVVPAQSNSTAPASKARVNHVAAAEAQDAPDVILGT 367
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
P N + T+L DS +TH FL+ S A +G V + + S
Sbjct: 368 FPVNLV---------PATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 418
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ V + +G F + LL D++LG +WL R G I K+T+ GQ
Sbjct: 419 LQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGQ 477
Query: 445 TVQLTGYDSLPPALANHGEINQLLLQE 471
V + S + +NQ+ L+E
Sbjct: 478 VVTVHALSS----ESLRSRLNQITLEE 500
>gi|19881569|gb|AAM00970.1|AC021892_34 Putative retroelement [Oryza sativa Japonica Group]
gi|78708151|gb|ABB47126.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1425
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 23/187 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 314 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 364
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ TIL DS +TH F++ +G + G +S
Sbjct: 365 VNSI---------PATILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSVS 415
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 416 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 474
Query: 447 QLTGYDS 453
DS
Sbjct: 475 VYKSPDS 481
>gi|284434667|gb|ADB85376.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 839
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
T+L DS ++H F++ A ++ V+T + + G +S++ C V + +G +F
Sbjct: 255 TVLFDSGASHSFVSQISAAKHPLKVSTLKTALLVPSPGSELSTNQSCPQVKMIIEGVEFL 314
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ ++ D++LG +W AIL
Sbjct: 315 ANLVIINTKSLDVILGMDWFTDHQAIL 341
>gi|77550665|gb|ABA93462.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1687
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 25/188 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 565 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHA--SAEEAQAAPEV-------VLGTFP 615
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 616 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 665
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + QG F + LL +++LG +WL ++ D + T+ T KG+T
Sbjct: 666 QFSPSITIEIQGSPFLANLILLESKDLNVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 724
Query: 446 VQLTGYDS 453
V D+
Sbjct: 725 VVYESPDA 732
>gi|38346970|emb|CAD39728.2| OSJNBb0049I21.6 [Oryza sativa Japonica Group]
Length = 1606
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++Q+ Q + + GG I+ C VP+ + F
Sbjct: 310 VKVLFDSGASHSFISLKSSQQHNLTRVKLRQPMLVHSPGGEIAVDTACIDVPIRLRDVVF 369
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL + G I ++T+ W
Sbjct: 370 PSNLMVLIPQTLDVILGMDWLAKHRGIIDCRRREVTLTTPW 410
>gi|62734591|gb|AAX96700.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550164|gb|ABA92961.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1071
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 271 GLCFNCDEQFKPGHRC-KAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQN 329
G+CFNC + PGH K P+ + + A A + + +T A QN
Sbjct: 413 GVCFNCGD---PGHYANKCPKAQRVKTVPAQNNSNAPAPK-------ARVNHVTAAEAQN 462
Query: 330 TMRLKGNL---KKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSS 386
+ + T+L DS +TH F + S A +G V + + +I+++
Sbjct: 463 APDVVLGMFPVNSISATVLFDSGATHSFFSKSFAGNHGMEVVSLGR--------PIIANT 514
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLR-SLGAILWDFSKLTMQFTWKGQT 445
V + +G F LL D++LG +WL G I K+T+ KGQ
Sbjct: 515 P----VFIEIEGISFPSSLILLESEEFDVILGMDWLTCHRGVIDCANRKVTLTNN-KGQA 569
Query: 446 VQLTGYDSLPPALANHG-EINQLLLQE 471
V + S P +HG +NQ+ LQE
Sbjct: 570 VYF--FASSP---RSHGVTLNQVALQE 591
>gi|224119166|ref|XP_002331290.1| predicted protein [Populus trichocarpa]
gi|222873490|gb|EEF10621.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 43.9 bits (102), Expect = 0.19, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 169 FISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLL 228
++ F+SGL++DIK +++LKP +L+ F+ A++QEE V R+ + M+RP+ +
Sbjct: 14 WLRSFISGLKKDIKPMLKILKPGTLMTNFDQAKWQEESNNVLARK---KKFMARPAAEVQ 70
Query: 229 NSSP 232
P
Sbjct: 71 VGRP 74
>gi|53981359|gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1850
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 70/187 (37%), Gaps = 23/187 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 585 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 635
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + G +S
Sbjct: 636 VNSI---------PATVLFDSGATHSFVSKKFVGMHGLRKEELSTPMRVHTPGNSSTSVS 686
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 687 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 745
Query: 447 QLTGYDS 453
DS
Sbjct: 746 VYKSPDS 752
>gi|29244670|gb|AAO73263.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108709213|gb|ABF97008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1652
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 554 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIEIQGVPF 613
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 614 LANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSN-DGRVVTVYALSS----ESL 668
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 669 RSRLNQITLEE 679
>gi|38344461|emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa Japonica Group]
Length = 1752
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 24/207 (11%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K A++ +P + + + A Q
Sbjct: 591 VCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAP-KARVNHVAAAEAQ 638
Query: 329 NTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 639 DAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 698
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ V + QG F + LL D++LG +WL R G I K+T+ G+
Sbjct: 699 LQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGR 757
Query: 445 TVQLTGYDSLPPALANHGEINQLLLQE 471
V + S + +NQ+ L+E
Sbjct: 758 VVTVHALSS----ESLRSRLNQITLEE 780
>gi|77552426|gb|ABA95223.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1874
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 261 VAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPE 313
V +Q +R +G +CFNC + PGH +C P+ + K A++ +P
Sbjct: 898 VQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSAVPA 946
Query: 314 TLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTT 370
+ + + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 947 S-KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDL 1005
Query: 371 TQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
+ + S + V + +G F + LL D++LG +WL
Sbjct: 1006 RRPLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWL 1057
>gi|77552016|gb|ABA94813.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1712
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++++ + + + + GG I+ S C VP+ + F
Sbjct: 718 VKVLFDSGASHSFISLKASQKHNLTLVGLRKPMIVHSPGGEITVSHACIDVPILLRDVVF 777
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL + G I ++T+ W
Sbjct: 778 PSNLMVLIPQTLDVILGMDWLAKHTGVIDCRRREVTLTTPW 818
>gi|62733026|gb|AAX95143.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549637|gb|ABA92434.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1847
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 28/210 (13%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC + PGH +C P+ + + + A + + +T A
Sbjct: 749 GVCFNCGD---PGHYSDKCPKPRRVKVVPAQSNSTASAS---------KARVNHVTAAEA 796
Query: 328 QNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
Q + G + V T+L DS +TH FL+ S +G V + +
Sbjct: 797 QGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQAL 856
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT---W 441
S + V + Q F + LL D++LG +WL ++ D + + T
Sbjct: 857 SLQRSPSVRIEIQEVPFLANLILLESKDLDVILGMDWLARYKGVI-DCANRNVTLTSNDG 915
Query: 442 KGQTVQLTGYDSLPPALANHGEINQLLLQE 471
+ TV +SL P+L NQ+ L+E
Sbjct: 916 RVVTVHALSSESLRPSL------NQITLEE 939
>gi|110288811|gb|AAP52698.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1713
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 34/236 (14%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIE 299
P P +P +Q +R +G +CFNC + PGH +C P+ +
Sbjct: 528 APRPVAVP------TQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV------- 571
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLN 356
K A++ +P + + + + A Q+ + G + V T+L DS TH FL+
Sbjct: 572 -KVVPAQSNSAVPAS-KARVNHVAAAEAQDAPDVILGTFLVNSVPTTVLFDSGVTHSFLS 629
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
S A +G V + + S + V + +G F + LL D++
Sbjct: 630 MSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVI 689
Query: 417 LGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
LG +WL R G I K+T+ G+ V + S + +NQ+ L+E
Sbjct: 690 LGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 740
>gi|39545598|emb|CAE02842.3| OSJNBa0014F04.8 [Oryza sativa Japonica Group]
Length = 1429
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G + + + S + V + QG F
Sbjct: 600 ATVLFDSGATHSFLSMSFAGNHGMEIEDLRRPLMVSTPSNQALSLKRSPSVRIEIQGVSF 659
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 660 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESL 714
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 715 RSRLNQITLEE 725
>gi|77554249|gb|ABA97045.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1474
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A G V + + S V + QG F
Sbjct: 376 ATVLFDSGATHSFLSMSFAGNDGMEVEDLRRHLMVSTPSNQALSLQHSPSVRIEIQGVPF 435
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTVQLTGYDSLPPALA 459
+ LL D++LG +WL R G I K+T+ + T+ +SL P+L
Sbjct: 436 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTIHALSSESLRPSL- 494
Query: 460 NHGEINQLLLQE 471
NQ+ L+E
Sbjct: 495 -----NQITLEE 501
>gi|108862184|gb|ABA96442.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1539
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 90/241 (37%), Gaps = 26/241 (10%)
Query: 239 GSSQPSLLGPPPPGLPPFRRLSVAEQTERRAK-GLCFNCDEQFKPGH-RCKAPQLLLLDA 296
S+ P L+ P LP S + E K G CFN K GH K P+L
Sbjct: 372 NSTPPPLMAPAESELPAMSAQSEQLKKESAGKPGPCFNYG---KHGHFASKCPKLKRAGP 428
Query: 297 DIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLN 356
+ EE EV L + + T+L DS +TH F++
Sbjct: 429 KFVQARINHASAEEAQAAPEVVLGTFL-------------VNSYPATVLFDSGATHSFIS 475
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
A +G V G ++++ C + + + F + LL D++
Sbjct: 476 KKFAGTHGLSVVELKIPMRVHTPGNDMNTAHYCPSMTIEIKRSPFLSNLILLESKDLDVI 535
Query: 417 LGAEWL-RSLGAILWDFSKLTMQFTW-KGQTVQLTGYDSLPPALANHGEINQLLLQEKQG 474
LG +WL R G I D + T+ T KG+ + P + + +NQ ++E+
Sbjct: 536 LGMDWLTRHKGVI--DCASRTITLTNDKGEKITFRS----PVSQKSVASLNQAAIKEQTE 589
Query: 475 I 475
I
Sbjct: 590 I 590
>gi|77554734|gb|ABA97530.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 567
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 15/176 (8%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P + QA E + + + + G P NT
Sbjct: 253 GSCFNCGEHGHFADKCPKP------TRAGPRFAQARVNHASAEEAQAAPEVILGTFPVNT 306
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ A +G + G +S
Sbjct: 307 I---------PATVLFDSGATHSFISKKFAGVHGLRKEELSTPMRVHTPGNSSTSVSYSP 357
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
V + Q F + LL D++LG +WL ++ ++ KG+ V
Sbjct: 358 SVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCVNRTITLTNEKGEAV 413
>gi|19225021|gb|AAL86497.1|AC099040_1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1722
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 34/236 (14%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIE 299
P P +P +Q +R +G +CFNC + PGH +C P+ +
Sbjct: 537 APRPVAVP------TQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV------- 580
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLN 356
K A++ +P + + + + A Q+ + G + V T+L DS TH FL+
Sbjct: 581 -KVVPAQSNSAVPAS-KARVNHVAAAEAQDAPDVILGTFLVNSVPTTVLFDSGVTHSFLS 638
Query: 357 SSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIV 416
S A +G V + + S + V + +G F + LL D++
Sbjct: 639 MSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVI 698
Query: 417 LGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
LG +WL R G I K+T+ G+ V + S + +NQ+ L+E
Sbjct: 699 LGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 749
>gi|108863002|gb|ABA99486.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1595
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 33/181 (18%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G+CFNC E PGH +C P+ + K A++ P + + + + A
Sbjct: 534 GVCFNCGE---PGHYSDKCPKPRRV--------KVVPAQSNSTAPAS-KARVNHVAAAKA 581
Query: 328 QNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYG-------CPVTTTTQFQVTV 377
Q + G + V T+L D +TH FL+ S A +G CP+ +T +
Sbjct: 582 QGAPDVILGTFLVNSVPATVLFDFGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL 641
Query: 378 ADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLT 436
S + V + QG F + LL D++LG +WL R G I K+T
Sbjct: 642 -------SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVT 694
Query: 437 M 437
+
Sbjct: 695 L 695
>gi|449457221|ref|XP_004146347.1| PREDICTED: uncharacterized protein LOC101206063 [Cucumis sativus]
Length = 1115
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 333 LKGNLKKHG--VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
L GN+K +G + D+ ++H F+N + AK+ G T + V + + G
Sbjct: 436 LHGNVKINGREAIAMFDTGASHNFMNVNEAKRIGLKFTNE-EGTVKAVNSKAQAIKGVAR 494
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
V V +Q LDF +LP+ DIVLG + + AI+
Sbjct: 495 GVTVKIGDWQGKLDFTVLPMDDFDIVLGLGFFDRVIAIV 533
>gi|4680179|gb|AAD27547.1|AF111709_1 polyprotein [Oryza sativa Indica Group]
Length = 1521
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 23/180 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ YG G +S
Sbjct: 404 VNSI---------PATVLFDSGATHSFISKKFVGMYGLRKEELRTPMRVHTPGNSSTSVS 454
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 455 FSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 513
>gi|62701906|gb|AAX92979.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1074
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++Q+ Q + + GG I+ C VP+ + F
Sbjct: 365 VKVLFDSGASHSFISLKASQQHNLTRVKLRQPMLVHSPGGEIAVDTACIDVPIRLRDVVF 424
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL + G I ++T+ W
Sbjct: 425 PSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLITPW 465
>gi|116308877|emb|CAH66012.1| OSIGBa0093M15.2 [Oryza sativa Indica Group]
Length = 1352
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 271 GLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPET-LEVSLKALTGAT 326
G+CFNC PGH +C P+ + K A++ +P + V+ A T A
Sbjct: 267 GVCFNC---VDPGHYADKCPKPRRV--------KVVPAQSNSTVPASKARVNHVAATEAQ 315
Query: 327 PQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS 384
+ L G + V T+L DS +TH FL+ S A +G V +
Sbjct: 316 DAPDVIL-GTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQAL 374
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
S + V + +G F + LL D++LG +WL R G I K+T+
Sbjct: 375 SLQRSPSVRIEIKGVPFLANLILLESKDIDVILGMDWLARYKGVIDCANRKVTL 428
>gi|77550714|gb|ABA93511.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|125577053|gb|EAZ18275.1| hypothetical protein OsJ_33812 [Oryza sativa Japonica Group]
Length = 153
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 69 GGALVQPRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWY 127
G A PR +L+F ++P + CEQ+ ++D + LA HL +A WY
Sbjct: 38 GSATSVPRFYKLEFPKYDDKDDPLNRFNHCEQFFCGQKTHDSDRVGLATYHLADNAQEWY 97
Query: 128 HWLEQTMGNMTWAQFKRALVTQFG 151
E G TW +FK QFG
Sbjct: 98 FHYEIHKGPPTWDEFKDLCHGQFG 121
>gi|38605881|emb|CAD40007.3| OSJNBb0052B05.10 [Oryza sativa Japonica Group]
Length = 1963
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + Q F
Sbjct: 983 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQEVPF 1042
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFT-WKGQTVQLTGYDSLPPALA 459
+ LL D++LG +WL R G I K+T+ + TV +SL P+L
Sbjct: 1043 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRPSL- 1101
Query: 460 NHGEINQLLLQE 471
NQ+ L+E
Sbjct: 1102 -----NQITLEE 1108
>gi|13129465|gb|AAK13123.1|AC080019_15 Similar to Transposon MAGGYgagandpolgenehomologues [Oryza sativa
Japonica Group]
Length = 2157
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DSS+TH FL+ S A +G V + + S + V + QG F
Sbjct: 839 ATVLFDSSATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 898
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+ LL D++LG +WL + G I K+T+
Sbjct: 899 LANLILLESKDLDVILGMDWLAKHKGVIDCANRKVTL 935
>gi|62733140|gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550597|gb|ABA93394.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1214
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ P +
Sbjct: 554 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTAPAS- 601
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 602 KARVNHVAAAEAQDAPDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 661
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 662 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCA 721
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 722 NRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 756
>gi|326427803|gb|EGD73373.1| hypothetical protein PTSG_13220 [Salpingoeca sp. ATCC 50818]
Length = 1051
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 43/194 (22%)
Query: 249 PPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDE----- 303
PPP L EQT RRA +PG R D D +D E
Sbjct: 126 PPPSL-------RKEQTSRRAGAA--------RPGRRNG-------DTDGDDGQEYSSIT 163
Query: 304 ----QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNS 357
A P T +S T +TP +L+ +GV IL+DS T
Sbjct: 164 LTVRTAPTTRSQPPTNYLS-AVTTASTPAYVPQLRFRATINGVPCNILLDSGCT----TD 218
Query: 358 SLAKQYGCPVTTTTQF----QVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGC 413
+A+++ TQ QVT DG +S S + + QG DF ++P+ G
Sbjct: 219 VVAEEFALKNLRVTQVRQDTQVTYGDGSHVSRSSMTTAT-LKVQGLTTTRDFLVIPIGGV 277
Query: 414 DIVLGAEWLRSLGA 427
D VLG +L+ A
Sbjct: 278 DAVLGRPFLKDYAA 291
>gi|77554821|gb|ABA97617.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1243
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 19/185 (10%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ I+ + A A E + + + + G P N+
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRF-IQARVNHASAKE-----AQAAPEVVLGTFPVNS 406
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ +G + + V G S+S + S
Sbjct: 407 I---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFS 456
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTVQL 448
+ + Q F + LL D++LG +WL ++ D S T+ T KG+TV
Sbjct: 457 PSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCSNRTVTLTNEKGETVVY 515
Query: 449 TGYDS 453
DS
Sbjct: 516 KSPDS 520
>gi|77553211|gb|ABA96007.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1197
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 19/208 (9%)
Query: 242 QPSLLGPPPPGLPPFRRLSVAEQTERRAK--GLCFNCDEQFKPGHRCKAPQLLLLDADIE 299
QP+ P P + P + A+ + G CFNC E +C P+ + ++
Sbjct: 213 QPNRRAAPRPPITPAQSAPSAQAKKETGTKPGSCFNCGELGHFADKCPKPRRVGPRF-VQ 271
Query: 300 DKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSL 359
+D A A EE EV L G N++ T+L DS +TH F++
Sbjct: 272 ARDNHASA-EEARAAPEVVL----GTFSVNSV---------PATVLFDSGATHSFISKKF 317
Query: 360 AKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGA 419
+G + G +S V + Q F + LL D++LG
Sbjct: 318 VGMHGLRKEKLSTPMRVHTPGNSSTSVSYSPSVLIEIQISPFLANLILLESKDLDVILGM 377
Query: 420 EWLRSLGAILWDFSKLTMQFT-WKGQTV 446
+WL ++ D + T+ T KG+TV
Sbjct: 378 DWLTKFKGVI-DCANRTVTLTNEKGETV 404
>gi|255550163|ref|XP_002516132.1| conserved hypothetical protein [Ricinus communis]
gi|223544618|gb|EEF46134.1| conserved hypothetical protein [Ricinus communis]
Length = 142
Score = 43.5 bits (101), Expect = 0.27, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 20/99 (20%)
Query: 283 GHRCKAPQLLLLDADIEDKDE--QAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKH 340
GH CK QL +A I +DE + E E E +E +++G +
Sbjct: 61 GHVCKNKQL---NATIATEDEVVEMEGAESNEEEIE---------------KIRGMVNGK 102
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
+ ILIDS STHIF++ ++A+ G ++ VT+A+
Sbjct: 103 DILILIDSGSTHIFVDIAMARCVGSVISKARTLVVTIAN 141
>gi|18997227|gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
gi|20042905|gb|AAM08733.1|AC116601_26 Putative polyprotein [Oryza sativa Japonica Group]
gi|31429938|gb|AAP51922.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1443
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 268 QQPAKREQGSKSVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQNNSTVPAS- 315
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 316 KARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRH 375
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 376 PLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 435
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 436 NRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 470
>gi|108708503|gb|ABF96298.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1357
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDA-------- 296
PP P + P + + +R LCFNC F+PGH +C P+ A
Sbjct: 507 PPTPAVQPGQGRRDIQVQQR----LCFNC---FEPGHFVDKCPKPRRQQGQAPPRPNNGG 559
Query: 297 -DIEDKDEQAEALEELPETLEVSLKA-LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
D+ E++ T +V + L +TP TIL DS ++H F
Sbjct: 560 KDVIRGRVNHVTAEDVLTTPDVIVGTFLIHSTP--------------ATILFDSGASHSF 605
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCD 414
++ + V + GGV+++ VP+ QG F D LL D
Sbjct: 606 ISVPFVGRNQLGVERLRNPLLITTPGGVMTTKYYSPAVPIEIQGIPFPSDLILLDTKNLD 665
Query: 415 IVLGAE 420
++LG +
Sbjct: 666 VILGMD 671
>gi|110289020|gb|ABB47439.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
T+L DSS+TH FL+ S A +G V + + S + V + QG F
Sbjct: 376 TVLFDSSATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 435
Query: 403 LDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ LL D++LG +WL ++
Sbjct: 436 ANLILLESKDLDVILGMDWLAKHKGVI 462
>gi|31431236|gb|AAP53044.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1094
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A+ +P +
Sbjct: 298 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQNNSTVPAS- 345
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V +
Sbjct: 346 KARVNHVAAAEAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 405
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 406 PLMVSTPSDQALSLQRSPSVRIEIKGVPFLANLILLESKDFDVILGMDWLARHKGVIDCA 465
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 466 NRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 500
>gi|356522690|ref|XP_003529979.1| PREDICTED: alpha-1,4-galacturonosyltransferase 1-like [Glycine max]
Length = 734
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 256 FRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLL 294
F++LS+ E ++R KGLCF DE+ P H CK L +L
Sbjct: 54 FKQLSLEEIQKKRMKGLCFAYDEKLSPNHVCKNKNLKIL 92
>gi|242094112|ref|XP_002437546.1| hypothetical protein SORBIDRAFT_10g029135 [Sorghum bicolor]
gi|241915769|gb|EER88913.1| hypothetical protein SORBIDRAFT_10g029135 [Sorghum bicolor]
Length = 207
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 88 ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALV 147
++P + RCE + RL E D + LA H+ G A WY+ E+ G TW QF ++
Sbjct: 83 DDPDIWLHRCELFFRLQRTEEGDKVCLAAFHMTGAAQIWYYGHERNNGVPTWPQFAESVR 142
Query: 148 TQFGTF 153
+F
Sbjct: 143 RRFAAL 148
>gi|125534278|gb|EAY80826.1| hypothetical protein OsI_36006 [Oryza sativa Indica Group]
Length = 153
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 69 GGALVQPRHIRLDFLVLSG-ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWY 127
G A PR +L+F ++P + CEQ+ ++D + LA HL +A WY
Sbjct: 38 GSATSVPRFYKLEFPKYDDKDDPLNRFNHCEQFFCGQKTHDSDRVGLATYHLADNAQEWY 97
Query: 128 HWLEQTMGNMTWAQFKRALVTQFG 151
E G TW +FK QFG
Sbjct: 98 FHYEIHKGPPTWDEFKDLCHGQFG 121
>gi|62734324|gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550058|gb|ABA92855.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1636
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 26/232 (11%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE 303
P P P ++ + EQ + G+CFNC + PGH +C P+ + K
Sbjct: 451 APRPVAAPTQQQPAKREQGSK--PGVCFNCGD---PGHYSDKCSKPRRV--------KVV 497
Query: 304 QAEALEELPET-LEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLA 360
A++ P + V+ A T A + L G + V T+L DS +TH FL+ S A
Sbjct: 498 PAQSNSTAPASKARVNHVAATEAQGAPDVIL-GTFLVNSVPTTVLFDSGATHSFLSMSFA 556
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+G V + + S + V + Q F + LL D++LG +
Sbjct: 557 GNHGMEVEDLIRPLMVSTPSNQALSLQRSPSVRIEIQEVPFLANLILLESKDLDVILGMD 616
Query: 421 WL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL R G I K+T+ G+ V + S + +NQ+ L+E
Sbjct: 617 WLARYKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQMTLEE 663
>gi|53981934|gb|AAV25052.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 29/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL---LL 294
G + +PS+ P G P + A++ G CFNC E +C P+ +
Sbjct: 582 GAAPRPSV-APAQSGQP-----AQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFI 635
Query: 295 DADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
A + AE + PE + G P N++ T+L DS +TH F
Sbjct: 636 QARVNHAS--AEEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSF 677
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGC 413
++ +G + + V G S+S + S + + Q F + LL
Sbjct: 678 ISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDL 736
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
D++LG +WL ++ S+ KG+TV
Sbjct: 737 DVILGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|116309867|emb|CAH66904.1| H0823A09.5 [Oryza sativa Indica Group]
Length = 1716
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ + QA E + + + G P N+
Sbjct: 617 GSCFNCGELGHFADKCPKPR------RAGPRFNQARVNHASAEEAQAVPEVVLGTFPVNS 670
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F+++ +G + + V G S+S + S
Sbjct: 671 I---------PATVLFDSGATHSFISTKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFS 720
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
+ + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 721 PSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 777
>gi|53981935|gb|AAV25053.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 29/213 (13%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL---LL 294
G + +PS+ P G P + A++ G CFNC E +C P+ +
Sbjct: 582 GAAPRPSV-APAQSGQP-----AQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFI 635
Query: 295 DADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
A + AE + PE + G P N++ T+L DS +TH F
Sbjct: 636 QARVNHAS--AEEAQTAPEVV-------LGTFPVNSI---------PATVLFDSGATHSF 677
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGC 413
++ +G + + V G S+S + S + + Q F + LL
Sbjct: 678 ISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDL 736
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
D++LG +WL ++ S+ KG+TV
Sbjct: 737 DVILGMDWLTKFKGVIDCASRTVTLTNEKGETV 769
>gi|77555663|gb|ABA98459.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 80/402 (19%), Positives = 139/402 (34%), Gaps = 68/402 (16%)
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWL----EQTMGNMTWAQFKRAL------------ 146
L + E D + A+ L+G A W+ E G TW +F A
Sbjct: 81 LVRVREADKVIFAVNQLEGPAGDWWDTYKEAREDGAGEPTWEEFTAAFRENFVPTAVMRM 140
Query: 147 -VTQFGTFEDGDAVGTQNL---------------PESFFISCFLSGLREDIK---IGVQM 187
+F G+ + L E I F+ GL ++++ IG
Sbjct: 141 KKNEFRRLRQGNTTVQEYLNKFTQLARYAIGDLADEEEKIDKFIEGLNDELRGPMIGQDH 200
Query: 188 LKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLG 247
SL+ ++ R + + V + R R +MSRP + T +G P ++
Sbjct: 201 ESFQSLIN--KVVRLENDQRTVEHNR-KRRLAMSRPPQTMPQRLKGATPSGWKP-PVMVT 256
Query: 248 PPPPGLPPFRRLSVAEQTERRAKGL----------CFNCDEQFKPGHRCKAPQLLLLDAD 297
P L F R VA Q L CFNC + + C P+ +
Sbjct: 257 NRPAALSNFNR-PVALQNRTPTPTLAAPGAKKNVDCFNCGKYGHYANNCPHPRKTPVRTG 315
Query: 298 IEDKDEQA-------EALEELPETLEVS----------LKALTGATPQNTMRLKGNLKKH 340
+ L + P+ + ++A Q + +L
Sbjct: 316 ANAMTVRGTTTPAVGRGLFKTPQPNRTTTGFGRGQVNHVRAEEAQEDQGVLMGMFSLNST 375
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
+ +L DS + H F++ ++Q+ Q + + GG I+ C VP+ +
Sbjct: 376 PIKVLFDSGALHSFISLKASQQHNLTRVKLRQPMLVHSPGGEIAVDTACIDVPIRLRDVV 435
Query: 401 FHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
F + +L D++LG +WL + G I ++T+ W
Sbjct: 436 FPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPW 477
>gi|146749389|gb|ABQ44355.1| polyprotein [Zea mays]
Length = 1476
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 25/177 (14%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAE-----------ALEELPETLEVSLKA 321
CF C C Q + A +DK + + ALEE+PE +
Sbjct: 312 CFTCGNVGHYAKNCPRNQQRQMPAPNQDKGRKQKVQVRQGKLNFTALEEVPEGAPI---- 367
Query: 322 LTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG 381
+TG ++ IL DS ++H F++ + P + + + V GG
Sbjct: 368 MTGTF---------SVYNQPALILFDSGASHSFISQKFSANCKLPFSHSKGSFMIVTPGG 418
Query: 382 VISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
I+++ VP+ +L + DI+LGA W+ +L ++ D + T++
Sbjct: 419 KIATNQLNQSVPIQLGSHIVKTTLLVLGLENVDIILGANWM-TLHQVVLDVASRTVE 474
>gi|38344597|emb|CAD39969.2| OSJNBa0072D08.2 [Oryza sativa Japonica Group]
Length = 1712
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 614 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 673
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 674 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESL 728
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 729 RSRLNQITLEE 739
>gi|15217306|gb|AAK92650.1|AC079634_11 Putative retroelement [Oryza sativa Japonica Group]
gi|31431383|gb|AAP53171.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1109
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 23/187 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 189 GSCFNCGELGHLADKCPKPRRAGPRFVQARVNHAS--AEEAQAAPEVV-------LGTFP 239
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G V + V G S+S
Sbjct: 240 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-VREELSTPMRVHTPGNSSTSV 289
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+ S + + Q F + LL D++LG +WL ++ ++ KG+TV
Sbjct: 290 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVINCANRTVTLTNEKGETV 349
Query: 447 QLTGYDS 453
DS
Sbjct: 350 VYKSPDS 356
>gi|108862410|gb|ABA97284.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1727
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 42/230 (18%)
Query: 248 PPPPGLPPFRRLSVAEQTERRAKG---LCFNCDEQFKPGH---RCKAPQLLLLDADIEDK 301
P P G P Q R A+G LCFNC F+PGH +C P +
Sbjct: 625 PMPDGQP--------SQGHRDAQGPQRLCFNC---FEPGHFADKCPKP-----------R 662
Query: 302 DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK 361
+Q +A P + + G N + + L V + ++H F++
Sbjct: 663 RQQGQAP---PRSNNGGKDVIRGRV--NHVTAEDVLTTPDVIV-----ASHSFISVPFVG 712
Query: 362 QYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEW 421
+ V + GGV+++ VP+ QG F D LL D++LG W
Sbjct: 713 RNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNW 772
Query: 422 LRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
L ++ D ++ T+ ++G + + PP + E+ Q+ L E
Sbjct: 773 LAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVSSSELYQIGLSE 818
>gi|54291804|gb|AAV32173.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1632
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 19/185 (10%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ + QA E + + + + G P N+
Sbjct: 641 GSCFNCGELGHFADKCPKPR------RAGPRFIQARVNHASAEEAQAATEVVLGTFPVNS 694
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ +G + + V G S+S + S
Sbjct: 695 I---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFS 744
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTVQL 448
+ Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 745 PSRTIEIQRSTFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETVVY 803
Query: 449 TGYDS 453
DS
Sbjct: 804 KSPDS 808
>gi|110288861|gb|ABB47133.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1577
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 259 LSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEEL 311
+S +Q +R +G +CFNC E PGH +C P+ + K ++ +
Sbjct: 488 VSTQQQPAKREQGSKPVVCFNCGE---PGHYADKCPKPRRV--------KVVPTQSNSTV 536
Query: 312 PETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVT 368
P + + S+ + A Q + G + V T+ DS +TH FL+ S A +G V
Sbjct: 537 PVS-KASVNHVAAAEAQGAPDVILGTFLVNLVPATVPFDSGATHSFLSMSFAGNHGMEVE 595
Query: 369 TTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGA 427
+ + S + V + QG F + LL D++LG +WL R G
Sbjct: 596 DLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGV 655
Query: 428 ILWDFSKLTM 437
I K+T+
Sbjct: 656 IDCANRKVTL 665
>gi|116309023|emb|CAH66138.1| H0616A11.2 [Oryza sativa Indica Group]
Length = 1510
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 342 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 392
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 393 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 442
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 443 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNGKGET 501
Query: 446 V 446
V
Sbjct: 502 V 502
>gi|57834025|emb|CAI44621.1| B1168G10.5 [Oryza sativa Japonica Group]
Length = 1456
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 7/168 (4%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G+CFNC + +C P+ + + + A V+ GA
Sbjct: 550 GVCFNCGDLGHYADKCPKPRRV----KVVPTQSNSTAPASKARVNHVAAAEAQGAPDVIL 605
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
NL T+L DS ++H FL+ S A +G V + + S +
Sbjct: 606 GTFLVNLVP--ATVLFDSGASHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSP 663
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
V + QG F + LL D++LG +WL R G I K+T+
Sbjct: 664 SVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTL 711
>gi|77555408|gb|ABA98204.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1521
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEV-------VLGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 404 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 453
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 512
Query: 446 V 446
V
Sbjct: 513 V 513
>gi|31415958|gb|AAP50978.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710193|gb|ABF97988.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1564
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 21/198 (10%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE 303
P P P ++ + EQ + G+CFNC + PGH +C P+ + K
Sbjct: 430 APRPVAAPTQQQPAKREQGSK--PGVCFNCGD---PGHYSDKCPKPRRV--------KVV 476
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLA 360
A++ P L+ + + A Q + G + V T+L DS +TH FL+ S
Sbjct: 477 PAQSNSTAP-ALKARVNHVAAAEAQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFV 535
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+G V + + S + V + Q F + LL D++LG +
Sbjct: 536 GNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQEVTFLANLILLESKDLDVILGMD 595
Query: 421 WL-RSLGAILWDFSKLTM 437
WL R G I K+T+
Sbjct: 596 WLARYKGVIDCANRKVTL 613
>gi|2864622|emb|CAA16969.1| putative protein [Arabidopsis thaliana]
gi|7270125|emb|CAB79939.1| putative protein [Arabidopsis thaliana]
Length = 1086
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG--- 135
RL+ L +G+ T +F+ EQ+ + E + A H D A + + Q+M
Sbjct: 105 RLEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKH 164
Query: 136 -NMTWAQFKRALVTQFGT-FEDGDAVGTQ---------------------NLPESFFISC 172
W +K L ++ D A TQ N E + +S
Sbjct: 165 VRHDWWSYKLLLQVRYDEHVNDSIAKLTQLQETEGIEEYHARFELISTRLNFAEDYLVSV 224
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
+L+GLR D ++ V+M P ++ Q L R E
Sbjct: 225 YLAGLRTDTQLNVRMFGPQTIQQCLMLGRLYE 256
>gi|38347263|emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]
Length = 1472
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P + K A++ +P +
Sbjct: 297 QQPAKREQGSNPVVCFNCGD---PGHYADKCPKPHRV--------KVVPAQSNSTVPAS- 344
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 345 KARVNHVAAAEAQDAPDVILGTFLINSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRC 404
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 405 PWMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 464
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 465 NRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 499
>gi|108862626|gb|ABA98029.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1541
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 35/195 (17%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ + + +
Sbjct: 515 STQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRCV----KVVPAQSNSTVSASKA 567
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYG------ 364
V+ GA P + G + V T+L DS +TH FL+ S A +G
Sbjct: 568 RVNHVAAAEAQGA-PDVIL---GTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDL 623
Query: 365 -CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL- 422
CP+ +T + S + V + QG F + LL D++LG +WL
Sbjct: 624 RCPLMVSTPSNQAL-------SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLA 676
Query: 423 RSLGAILWDFSKLTM 437
R G I K+T+
Sbjct: 677 RHKGVIDCANRKVTL 691
>gi|116308831|emb|CAH65969.1| H0820C10.2 [Oryza sativa Indica Group]
Length = 1685
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 587 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVKIEIQGVPF 646
Query: 402 HLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ LL D++LG +WL +++
Sbjct: 647 LANLILLKSKDLDVILGMDWLARHKSVI 674
>gi|62733279|gb|AAX95396.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|77550170|gb|ABA92967.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1569
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 26/232 (11%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE 303
P P P ++ + EQ + G+CFNC + PGH +C P+ + K
Sbjct: 428 APRPVAAPTQQQPAKREQGSK--PGVCFNCGD---PGHYSDKCPKPRRV--------KVV 474
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLA 360
A++ P + + + + A Q + G + V T+L DS +TH FL+ S A
Sbjct: 475 PAQSNSTTPAS-KARVNHVAAAEAQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFA 533
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+G V + + S + V + Q F + LL D++LG +
Sbjct: 534 GNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQEVPFLANLILLESKDLDVILGMD 593
Query: 421 WL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL R G I K+T+ G+ V + S + +NQ+ L+E
Sbjct: 594 WLARYKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQMTLEE 640
>gi|77555297|gb|ABA98093.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1424
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 295 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 342
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH F++ S A +G V +
Sbjct: 343 KARVNHVAAAEAQDAPDVILGTFLVNLVPATVLFDSGATHSFISMSFAGNHGMEVEDLRR 402
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 403 PLMVSTPSNQALSLQRSPSVRIEIKGVSFLANLILLESKDLDVILGMDWLARHKGVIDCA 462
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 463 NRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQITLEE 497
>gi|116310689|emb|CAH67488.1| H0306B06.3 [Oryza sativa Indica Group]
Length = 1510
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 404 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 453
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 512
Query: 446 V 446
V
Sbjct: 513 V 513
>gi|77554454|gb|ABA97250.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1429
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 335 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 385
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 386 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREEPSTPMRVHTPGNSSTSV 435
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 436 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 494
Query: 446 V 446
V
Sbjct: 495 V 495
>gi|31126663|gb|AAP44586.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709242|gb|ABF97037.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1436
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 15/195 (7%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAE 306
P P P ++ + EQ + G+CFNC + +C P+ + K A+
Sbjct: 289 APRPVAAPTQQQPAKREQGSK--PGVCFNCGDLGHYADKCPKPRRV--------KVVPAQ 338
Query: 307 ALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQY 363
+ P + + + + A Q + G + V T+L DS +TH FL+ A +
Sbjct: 339 SNSTAPAS-KARVNHVAAAEAQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMGFAGNH 397
Query: 364 GCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL- 422
G V + + S + V + QG F + LL D++LG +WL
Sbjct: 398 GMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLA 457
Query: 423 RSLGAILWDFSKLTM 437
R G I K+T+
Sbjct: 458 RYKGVIDCANRKVTL 472
>gi|62733790|gb|AAX95899.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549663|gb|ABA92460.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1686
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 12/134 (8%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS TH FL+ S A +G V + + S + V + QG F
Sbjct: 626 ATVLFDSGGTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 685
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ---TVQLTGYDSLPPA 457
+ LL D++LG +WL R G I D + + T G TV +SL
Sbjct: 686 LANLILLESKDLDVILGMDWLARHKGVI--DCANRKVTLTSNGGRVVTVHALSSESL--- 740
Query: 458 LANHGEINQLLLQE 471
+NQ+ L+E
Sbjct: 741 ---RSRLNQITLEE 751
>gi|326670751|ref|XP_003199285.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 71/186 (38%), Gaps = 42/186 (22%)
Query: 258 RLSVAEQTERRAKGLCFNCDEQFKPGH-------RCKAPQLLLLDADIEDKDEQAEALEE 310
RL+ AE+ R +GLC C GH R P + + DIE +
Sbjct: 240 RLTAAERQRRLTRGLCLYCGAG---GHVKLDCPLRPMRPSVSVFSFDIEKMN-------- 288
Query: 311 LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
P T +V L + + T LIDS S F++ SL +Q +
Sbjct: 289 -PLTTKVLLTTHSSSV--------------SATALIDSGSAGNFISHSLCRQLHLRTEAS 333
Query: 371 TQ-FQVTVADGGVISSS---GKCSHVPVNSQGFQFH---LDFFLLPVSGCDIVLGAEWLR 423
T +Q+ + S + KC PVN Q H + F +L + DI+LG WL
Sbjct: 334 THIYQIQPITNNIKSQARIHRKCE--PVNLQIGWLHKEDIQFLVLEGATMDIILGRPWLV 391
Query: 424 SLGAIL 429
IL
Sbjct: 392 KHDPIL 397
>gi|62734491|gb|AAX96600.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1530
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 26/232 (11%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDE 303
P P P ++ + EQ + G+CFNC + PGH +C P+ + K
Sbjct: 389 APRPVAAPTQQQPAKREQGSK--PGVCFNCGD---PGHYSDKCPKPRRV--------KVV 435
Query: 304 QAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLA 360
A++ P + + + + A Q + G + V T+L DS +TH FL+ S A
Sbjct: 436 PAQSNSTTPAS-KARVNHVAAAEAQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFA 494
Query: 361 KQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAE 420
+G V + + S + V + Q F + LL D++LG +
Sbjct: 495 GNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQEVPFLANLILLESKDLDVILGMD 554
Query: 421 WL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
WL R G I K+T+ G+ V + S + +NQ+ L+E
Sbjct: 555 WLARYKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESLRSRLNQMTLEE 601
>gi|50838904|gb|AAT81665.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108709836|gb|ABF97631.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2784
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 24/213 (11%)
Query: 235 TKTGGSSQPSL-LGPP--PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKA 288
T+ G + +P L LGP P G P ++ + EQ+ + +CFN + PGH +C
Sbjct: 1261 TQQGNNQKPRLTLGPQSMPQGAPAQQQPAKREQSSKPV--VCFNYGD---PGHYADKCPK 1315
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TIL 345
P+ + + + A + + + A Q+ + G + V T+L
Sbjct: 1316 PRRVKVVPTQSNSTAPAS---------KARVNHVAAAEAQDAPDVILGTFLVNSVPATVL 1366
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
DS +TH FL+ S A +G V + + S + V + +G F +
Sbjct: 1367 YDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSSQALSLQRSPSVRIEIKGVPFLANL 1426
Query: 406 FLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
LL D++LG +WL R G I K+T+
Sbjct: 1427 ILLESKDLDVILGMDWLARHKGVIDCANRKVTL 1459
>gi|116308982|emb|CAH66104.1| OSIGBa0101K10.3 [Oryza sativa Indica Group]
Length = 1521
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 23/180 (12%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + G +S
Sbjct: 404 VNSI---------PATVLFDSGATHSFISKKFVGMHGLMRKELSTPMRVHTPGNSSTSVQ 454
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
+ + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 455 FSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 513
>gi|110288892|gb|ABG66013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1683
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 610 ATMLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPF 669
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 670 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESL 724
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 725 RSRLNQITLEE 735
>gi|19881555|gb|AAM00956.1|AC021892_20 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1167
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 259 LSVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEEL 311
+S +Q +R +G +CFNC E PGH +C P+ + K ++ +
Sbjct: 35 VSTQQQPAKREQGSKPVVCFNCGE---PGHYADKCPKPRRV--------KVVPTQSNSTV 83
Query: 312 PETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVT 368
P + + S+ + A Q + G + V T+ DS +TH FL+ S A +G V
Sbjct: 84 PVS-KASVNHVAAAEAQGAPDVILGTFLVNLVPATVPFDSGATHSFLSMSFAGNHGMEVE 142
Query: 369 TTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGA 427
+ + S + V + QG F + LL D++LG +WL R G
Sbjct: 143 DLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGV 202
Query: 428 ILWDFSKLTM 437
I K+T+
Sbjct: 203 IDCANRKVTL 212
>gi|58532040|emb|CAE05093.3| OSJNBa0009K15.13 [Oryza sativa Japonica Group]
Length = 1480
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + QG F
Sbjct: 537 ATVLFDSGATHSFLSMSFAGNHGMEVEDIRRPLLVSTPSNQALSLQRSPSVRIEIQGVPF 596
Query: 402 HLDFFLLPVSGCDIVLGAEWL 422
+ LL D++LG +WL
Sbjct: 597 LANLILLESKDLDVILGMDWL 617
>gi|90186404|gb|ABD91504.1| putative polyprotein [Oryza sativa Indica Group]
Length = 932
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 28/176 (15%)
Query: 271 GLCFNCDE--QFK---PGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGA 325
G CFNC E F P RC P+ + QA E + + + + G
Sbjct: 244 GSCFNCGELGHFADKCPKPRCTGPRFV-----------QARVNHASAEEAQAAPEVVLGT 292
Query: 326 TPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
P N++ T+L DS +TH F++ +G + + V G S+
Sbjct: 293 FPVNSI---------PATVLFDSGATHSFISKKFVGVHGL-IREELSTPIRVHTPGNSST 342
Query: 386 SGKCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT 440
S + S + + Q F + LL D++LG +WL ++ D + T+ T
Sbjct: 343 SVQFSPSITIEIQRSPFLANLILLDSKDLDVILGMDWLTKFKGVI-DCANRTVTLT 397
>gi|18767374|gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
gi|21327374|gb|AAM48279.1|AC122148_32 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
Japonica Group]
gi|31431495|gb|AAP53268.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1230
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 344 ILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK---CSHVPVNSQGFQ 400
+L DS +TH F++++ ++Y P T+Q + + + S C P+ G++
Sbjct: 412 VLFDSGATHSFISTNFVRKYTIP---TSQLKERICIETPLDSQTTNLICKLCPITIDGWE 468
Query: 401 FHLDFFLLPVSGCDIVLGAEWL 422
D L + DI+LG +WL
Sbjct: 469 LTADLIPLDMHDFDIILGMDWL 490
>gi|315041357|ref|XP_003170055.1| hypothetical protein MGYG_09147 [Arthroderma gypseum CBS 118893]
gi|311345089|gb|EFR04292.1| hypothetical protein MGYG_09147 [Arthroderma gypseum CBS 118893]
Length = 1590
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 15/273 (5%)
Query: 163 NLPESFFISCFLSGLREDIKIGVQML--KPASLLQTFELARFQEEYAAVSNRRIPPRPSM 220
+LPE + + + L D++ +Q L KP S+ + A E ++ R
Sbjct: 200 DLPEEYLVPSTIGKLLPDLQHEIQRLQSKPGSMEELKAEAYRLEAVLRKKDQDKGNRAMR 259
Query: 221 SRPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
P P S + P+ F ++ E+ R + LC C ++
Sbjct: 260 DMPKPIYQGSRDNKRRQNQDRDPATTQLNKKRKSAFNYITPEERERRFKEKLCLACGKKE 319
Query: 281 KPGHRCKAPQLLLLDADIEDK---DEQAEALEELPETLEVSLKALTGATPQNTMRLKGNL 337
C LL + + K + + A+ P T+ + A P LK
Sbjct: 320 HMAKDCPDRARLLRERPQDQKRNDNPKLLAIRADPRTVTTGV-----ALPPQLATLKPQG 374
Query: 338 KKH-GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGK--CSHVPV 394
K+ V ++DS++ + F+N +LA+ + T ++ +ADG + + G S
Sbjct: 375 KEQVQVQAIVDSAADYNFINPTLARLFIEETEWTLGGKIDLADGKKMDTQGTTLASVALR 434
Query: 395 NSQGFQF--HLDFFLLPVSGCDIVLGAEWLRSL 425
+ +G + F ++P+ +++LG WL +
Sbjct: 435 DYRGVTRTQKVTFVIIPMVDIEVILGKPWLEEV 467
>gi|53981183|gb|AAV24823.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1374
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C+ P+ + A + AE + PE + G P
Sbjct: 244 GSCFNCGELGHFADKCQKPRRAGPRFVQARVNHAS--AEEAQAAPEVV-------LGTFP 294
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 295 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 344
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 345 QFSPSITIEIQRSPFLANLILLDSKDLDVILGMDWLTKFKGVI-DCANHTVTLTNEKGET 403
Query: 446 V 446
V
Sbjct: 404 V 404
>gi|50838937|gb|AAT81698.1| putative retrotransposon protein, 5'-partial [Oryza sativa Japonica
Group]
Length = 1633
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 24/213 (11%)
Query: 235 TKTGGSSQPSL-LGPP--PPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGH---RCKA 288
T+ G + +P L LGP P G P ++ + EQ+ + +CFN + PGH +C
Sbjct: 110 TQQGNNQKPRLTLGPQSMPQGAPAQQQPAKREQSSKPV--VCFNYGD---PGHYADKCPK 164
Query: 289 PQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TIL 345
P+ + + + A + + + A Q+ + G + V T+L
Sbjct: 165 PRRVKVVPTQSNSTAPAS---------KARVNHVAAAEAQDAPDVILGTFLVNSVPATVL 215
Query: 346 IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405
DS +TH FL+ S A +G V + + S + V + +G F +
Sbjct: 216 YDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSSQALSLQRSPSVRIEIKGVPFLANL 275
Query: 406 FLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
LL D++LG +WL R G I K+T+
Sbjct: 276 ILLESKDLDVILGMDWLARHKGVIDCANRKVTL 308
>gi|58533058|emb|CAI44662.1| OSJNBa0061C06.18 [Oryza sativa Japonica Group]
Length = 1522
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 17/186 (9%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CF+C + PGH +C P+ + + Q+ P
Sbjct: 554 STQQQPAKREQGSKPVVCFSCGD---PGHYADKCSKPRRVKVVP------AQSNTTAPAP 604
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + A + + + T+L DS +TH FL+ S A +G V +
Sbjct: 605 KARVNHVAAAEAQDAPDVILSTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 664
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL +++LG +WL R G I
Sbjct: 665 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLNVILGMDWLARHKGVIDCA 724
Query: 432 FSKLTM 437
K+T+
Sbjct: 725 NRKVTL 730
>gi|58532079|emb|CAE04985.3| OSJNBa0057M08.11 [Oryza sativa Japonica Group]
Length = 1664
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 238 GGSSQPSL-LGPP--PPGLPPFRRLSVAEQTERRAKG----LCFNCDEQFKPGH---RCK 287
G S +P L LGP P G P +Q +R +G +CFNC + PGH +C
Sbjct: 767 GNSQRPRLTLGPQSMPQGAPRPVASPTQQQPAKREQGSKPGVCFNCGD---PGHYADKCP 823
Query: 288 APQLL-LLDADIEDKDEQAEALEELPETLEV--SLKALTGATPQNTMRLKGNLKKHGVTI 344
P+ + ++ A A+A E + + G P N++ T+
Sbjct: 824 KPRRVKVVPAQNNPSAPAAKARVNHVAAAEAQGAPDVILGTFPVNSV---------PATV 874
Query: 345 LIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLD 404
L DS + H FL+ S A G V + + SS + V + QG F +
Sbjct: 875 LFDSGAMHSFLSMSFAGNQGMEVKELRRPLMVSTPSNQALSSQRSPSVRIEIQGVPFLAN 934
Query: 405 FFLLPVSGCDIVLGAE 420
LL D++LG +
Sbjct: 935 LILLESKDLDVILGMD 950
>gi|16905211|gb|AAL31081.1|AC091749_10 putative polyprotein [Oryza sativa Japonica Group]
gi|22655733|gb|AAN04150.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1416
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R G +CFNC + PGH +C P+ + K ++ +P
Sbjct: 263 STQQQPAKREHGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPTQSNSTVP 311
Query: 313 ETLEVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTT 369
+ + + + A Q+ + G + V T+L DS +TH FL+ S A +G V
Sbjct: 312 AS-KARVNHVAAAEAQDAPDVILGTFLVNLVPATMLFDSGATHSFLSMSFAGNHGMEVED 370
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ + S + V + QG F + LL D++LG +WL R G I
Sbjct: 371 LRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVI 430
Query: 429 LWDFSKLTM 437
K+T+
Sbjct: 431 DCANRKVTL 439
>gi|77555011|gb|ABA97807.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1188
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q ++ +G +CFNC + PGH +C P+ ++ Q+ + P
Sbjct: 258 STQQQPAKKEQGSKPVVCFNCGD---PGHYADKCPKPR------RVKVVPAQSNSTAPAP 308
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + A + + + T+L DS +TH FL+ S A +G V +
Sbjct: 309 KARVNHVAAAEAQGAPDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRR 368
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 369 PLMVSTPSNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 428
Query: 432 FSKLTM 437
K+T+
Sbjct: 429 NRKVTL 434
>gi|9755749|emb|CAC01880.1| putative protein [Arabidopsis thaliana]
Length = 716
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG--- 135
RL+ L +G+ T +F+ EQ+ + E + A H D A + + Q+M
Sbjct: 105 RLEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKH 164
Query: 136 -NMTWAQFKRALVTQFGT-FEDGDAVGTQ---------------------NLPESFFISC 172
W +K L ++ D A TQ N E + +S
Sbjct: 165 VRHDWWSYKLLLQVRYDEHVNDSIAKLTQLQETEGIEEYHARFELISTRLNFAEDYLVSV 224
Query: 173 FLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
+L+GLR D ++ V+M P ++ Q L R E
Sbjct: 225 YLAGLRTDTQLNVRMFGPQTIQQCLMLGRLYE 256
>gi|15217260|gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 1571
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + +G F
Sbjct: 653 ATVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPF 712
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 713 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESL 767
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 768 RSRLNQITLEE 778
>gi|110288660|gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1662
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + + S + V + +G F
Sbjct: 645 ATVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPF 704
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 705 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESL 759
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 760 RSRLNQITLEE 770
>gi|77553419|gb|ABA96215.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 73/357 (20%), Positives = 135/357 (37%), Gaps = 50/357 (14%)
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE------------YAAVSNRR 213
E IS F GL +I+ ++ + ++ + F A E A S R+
Sbjct: 263 EDARISRFYGGLNREIRDILEYKEYNTMNRLFHFACKAEREVQGRNKHRSSLAGATSTRQ 322
Query: 214 IPPRPSMS--RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLS---------VA 262
PR S + RP + + + +K P+ R ++ +A
Sbjct: 323 STPRQSTTVVRPPTSMPSHAQETSKNASVQTPAKSATSVDSTGRTRDITCHRCHGIGHIA 382
Query: 263 EQTERRAKGLCFNCDEQFKPGHRCKAPQLLLL--------DADIEDKDEQAEALEELPE- 313
R + L N D ++ C L D DIE+ E+L++ P
Sbjct: 383 RDCPNR-RALFVNADGEYTSASDCDDEYALAATDHAGGQDDEDIEEVHLHPESLDQYPSL 441
Query: 314 TLEVSLKALTGATPQNT----MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC---- 365
++++L A QN + K +K H V ++IDS S + + + K+ G
Sbjct: 442 IVKLALSAKEKCEEQNQRHNLFQSKVLVKGHTVKMIIDSGSCNNLASEEMVKKLGLTTHP 501
Query: 366 -PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRS 424
P Q+ T V + +P + + ++ ++ + C ++LG W
Sbjct: 502 HPHPYHIQWFNTCGKMKVT----RLVKIPFSIGSYHDQIECDVVHMQACSVILGRPWQYD 557
Query: 425 LGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMA 481
+++D T +F + G+ V L S+ PA A ++ +L ++K QI+A
Sbjct: 558 R-EVVFDGRTNTYKFMFDGKRVVL---HSMTPAAALKDDLARLECEKKAKSENQIIA 610
>gi|116309775|emb|CAH66816.1| OSIGBa0093K19.3 [Oryza sativa Indica Group]
Length = 575
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K A++ P + + + + A Q
Sbjct: 82 VCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTAPAS-KARVNHVAAAEAQ 129
Query: 329 NTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 130 DAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALS 189
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+ V + +G F + LL D++LG +WL R G I K+T+
Sbjct: 190 LQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTL 242
>gi|78708144|gb|ABB47119.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1522
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 31/217 (14%)
Query: 235 TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL-- 292
+ G +S+P + P G P + A++ G CFNC + +C P+
Sbjct: 360 SNRGAASRPPM-APAQSGQP-----AQAKKETGAKPGSCFNCGKLGHFADKCPKPRRAGP 413
Query: 293 -LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSST 351
+ A + AE + PE + G P N++ T+L DS +T
Sbjct: 414 RFIQARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGAT 455
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPV 410
H F++ +G + + V G S+S + S + + Q F + LL
Sbjct: 456 HSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLES 514
Query: 411 SGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
D++LG +WL ++ D + T+ T KG+TV
Sbjct: 515 KDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 550
>gi|116310126|emb|CAH67143.1| OSIGBa0130P02.7 [Oryza sativa Indica Group]
Length = 1741
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 566 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 613
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V T+L DS +TH FL+ S A + V +
Sbjct: 614 KARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHEMEVEDLRR 673
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 674 PLMISTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCA 733
Query: 432 FSKLTM 437
K+T+
Sbjct: 734 NRKVTL 739
>gi|110288674|gb|ABB46871.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1446
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ +L DS +TH F++ +G + + V G S+S
Sbjct: 404 VNSI---------PAIVLFDSGATHSFISKKFVGMHGL-IREKLSTPMRVHTPGNSSTSV 453
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGKT 512
Query: 446 VQLTGYDS 453
V DS
Sbjct: 513 VVYKSPDS 520
>gi|54287534|gb|AAV31278.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1727
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ S A +G V + S + V + +G F
Sbjct: 554 ATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIEIKGVPF 613
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 614 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESL 668
Query: 461 HGEINQLLLQE 471
+NQ+ L+E
Sbjct: 669 RSRLNQITLEE 679
>gi|21741612|emb|CAD40943.1| OSJNBa0027G07.15 [Oryza sativa Japonica Group]
Length = 999
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 24/207 (11%)
Query: 272 LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
+CFNC + PGH +C P+ + K A++ P + + + + A Q
Sbjct: 82 VCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTAPAS-KARVNHVAAAEAQ 129
Query: 329 NTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISS 385
+ + G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 130 DAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPNNQALS 189
Query: 386 SGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQ 444
+ V + +G F + LL D++LG +WL R G I K+T+ G+
Sbjct: 190 LQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGR 248
Query: 445 TVQLTGYDSLPPALANHGEINQLLLQE 471
V + S + +NQ+ L+E
Sbjct: 249 VVTVHALSS----ESLRSRLNQITLEE 271
>gi|50872410|gb|AAT85010.1| polyprotein [Oryza sativa Japonica Group]
gi|108708868|gb|ABF96663.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1760
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 25/218 (11%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDAD 297
G +S+P + P G P + A++ G CFNC E +C P+
Sbjct: 565 GAASRPPM-APAQSGQP-----AQAKKETGAKPGSCFNCGELGHFADKCPKPR------H 612
Query: 298 IEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNS 357
+ QA E + + + + G P N++ T+L DS + H F++
Sbjct: 613 AGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSI---------PATVLFDSGAMHSFISK 663
Query: 358 SLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDIV 416
+G + + V G S+S + S + + Q F + LL D++
Sbjct: 664 KFVGMHGF-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVI 722
Query: 417 LGAEWLRSLGAILWDFSKLTMQFT-WKGQTVQLTGYDS 453
LG +WL ++ D + T+ T KG+TV DS
Sbjct: 723 LGMDWLTKFRGVI-DCANRTVTLTNEKGETVVYKSPDS 759
>gi|19881618|gb|AAM01019.1|AC090488_19 Putative retroelement [Oryza sativa Japonica Group]
Length = 1475
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ +L DS +TH F++ +G + + V G S+S
Sbjct: 404 VNSI---------PAIVLFDSGATHSFISKKFVGMHGL-IREKLSTPMRVHTPGNSSTSV 453
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGKT 512
Query: 446 VQLTGYDS 453
V DS
Sbjct: 513 VVYKSPDS 520
>gi|14716942|emb|CAC44140.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 8/168 (4%)
Query: 272 LCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTM 331
+C NC + C AP++ L+ A A + A G N +
Sbjct: 94 ICHNCRKLGHMTRDCTAPKVELVV-------NVARATRPTARGRIYCVNAEEGNPSGNLI 146
Query: 332 RLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSH 391
+ + + +T L DS +TH F+ + V+ V ++ + C H
Sbjct: 147 QRDCEIAGNTLTALFDSGATHSFIAMGCVNRLKLSVSALPFDLVVSTPAKTLTVNSACLH 206
Query: 392 VPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQF 439
+ Q F ++ LP+ +++LG +W+ S ++ D ++ + F
Sbjct: 207 CRMTIQNRDFLVNLICLPLQSLEVILGMDWM-SYHYVILDCARTLVLF 253
>gi|21672035|gb|AAM74397.1|AC119149_12 Putative retroelement [Oryza sativa Japonica Group]
Length = 1512
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 31/214 (14%)
Query: 238 GGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL---LL 294
G +S+P + P G P + A++ G CFNC + +C P+ +
Sbjct: 280 GAASRPPM-APAQSGQP-----AQAKKETGAKPGSCFNCGKLGHFADKCPKPRRAGPRFI 333
Query: 295 DADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
A + AE + PE + G P N++ T+L DS +TH F
Sbjct: 334 QARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGATHSF 375
Query: 355 LNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGC 413
++ +G + + V G S+S + S + + Q F + LL
Sbjct: 376 ISKKFVGMHGL-IREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESKDL 434
Query: 414 DIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
D++LG +WL ++ D + T+ T KG+TV
Sbjct: 435 DVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 467
>gi|336385818|gb|EGO26965.1| hypothetical protein SERLADRAFT_436788 [Serpula lacrymans var.
lacrymans S7.9]
Length = 520
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRC----KAPQLLLLDADIED------------ 300
RRL+ E+ RR +G CF C+E+ G C K P+ + ED
Sbjct: 385 RRLTKDEEESRRKEGRCFICNEKGHIGRNCRNKGKTPERKVRQTKTEDDTKTVVEEDRVQ 444
Query: 301 ----------KDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGV--TILIDS 348
+D++ EA++EL + E ++ A N++++ +LK+ + LIDS
Sbjct: 445 NIMRMWRELGEDQRTEAMKELED--EATINA-------NSLQIDCSLKQKTIRTKALIDS 495
Query: 349 SSTHIFLNSSLAKQYGCP 366
+T F+++ ++ P
Sbjct: 496 GATDDFMDTKFTIRHRLP 513
>gi|77548465|gb|ABA91262.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 136/359 (37%), Gaps = 54/359 (15%)
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE------------YAAVSNRR 213
E IS F GL +I+ ++ + ++ + F A E A S R+
Sbjct: 263 EDARISRFYGGLNREIRDILEYKEYNTMNRLFHFACKAEREVQGRNKHRSSLAGATSTRQ 322
Query: 214 IPPRPSMSRPSPPLLNSSPT----ITKTGGSSQPSLLGPPPPGLPPFRRLS--------- 260
PR S + PP S+P+ +K P+ R ++
Sbjct: 323 STPRQSTTVVRPP--TSTPSHAQETSKNASVQTPAKSATSVDSTGRTRDITCHRCHGIGH 380
Query: 261 VAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLL--------DADIEDKDEQAEALEELP 312
+A R + L N D ++ C L D DIE+ E+L++ P
Sbjct: 381 IARDCPNR-RALFVNADGEYTSASDCDDEYALAATDHAGGQDDEDIEEVHLHPESLDQYP 439
Query: 313 E-TLEVSLKALTGATPQNT----MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC-- 365
++++L A QN + K +K H V ++IDS S + + + K+ G
Sbjct: 440 SLIVKLALSAKEKCEEQNQRHNLFQSKVLVKGHTVKMIIDSGSCNNLASEEMVKKLGLTT 499
Query: 366 ---PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
P Q+ T V + +P + + ++ ++ + C ++LG W
Sbjct: 500 HPHPHPYHIQWFHTCGKMKVT----RLVKIPFSIGSYHDQIECDVVHMQACSVILGRPWQ 555
Query: 423 RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMA 481
+++D T +F + G+ V L S+ PA A ++ +L ++K QI+A
Sbjct: 556 YDR-EVVFDGRTNTYKFMFDGKRVVL---HSMTPAAALKDDLARLECEKKAKSENQIIA 610
>gi|284434566|gb|ADB85310.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 446
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 30/202 (14%)
Query: 76 RHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMG 135
R ++DF G N I + E Y +A + + LA ++ A W
Sbjct: 242 RGPKIDFPRFDGSNSLEWIRQSETYFAMANVPDEAKFDLAQMYMIRRADNWLRSTCLLWN 301
Query: 136 NMTWAQFKRALVTQFG--------------------------TFEDGDAVGTQNLP---E 166
W F R + +F FE+ A+ P E
Sbjct: 302 PPPWPNFCRMICDRFAQYSGYEVLENFHSVKQYNQNISEYIDKFEELMAIYKTENPMQNE 361
Query: 167 SFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEYA-AVSNRRIPPRPSMSRPSP 225
FF+ CF++ LR++IK ++ LKP +L + + +A+ E+ A AV+ + + R
Sbjct: 362 HFFVKCFVNRLRQEIKHYLKPLKPQALCEAYWMAKDMEQGAGAVARKGVHNNTFGQRKGS 421
Query: 226 PLLNSSPTITKTGGSSQPSLLG 247
N++ + + G S Q +G
Sbjct: 422 YSANANKSKNQNGPSVQKKGIG 443
>gi|23266289|gb|AAN16328.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430803|gb|AAP52669.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1263
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
T+L DS +TH FL+ S +G V + + S + V + QG F
Sbjct: 616 TVLFDSGATHSFLSMSFGGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 675
Query: 403 LDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANH 461
+ LL D++LG +WL R G I K+T+ G+ V + S +
Sbjct: 676 ANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN-DGRVVTVHALSS----ESLR 730
Query: 462 GEINQLLLQE 471
+NQ+ L+E
Sbjct: 731 SRLNQITLEE 740
>gi|326674161|ref|XP_003200083.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1377
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 70/176 (39%), Gaps = 32/176 (18%)
Query: 258 RLSVAEQTERRAKGLCFNCDEQFKPG--------HRCKAPQLLLLDADIEDKDEQAEALE 309
RLS+ E+ RR +GLC C G H +LL+ + + DK A L
Sbjct: 286 RLSLQEKRRRRTEGLCLYCRGGGASGGFLSRKRQHPSVGKRLLMGEISL-DKSSAAATL- 343
Query: 310 ELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTT 369
LP T+ G+ QNT H L+DS + F++SS A + PV
Sbjct: 344 -LPVTIT------WGSGSQNT---------HA---LVDSGAEGNFIDSSFAFSFKLPVIA 384
Query: 370 TTQFQVTVADGGVISSSGKCSHVPVN---SQGFQFHLDFFLLPVSGCDIVLGAEWL 422
Q A G+ + S P+ S ++ FFL S +VLG WL
Sbjct: 385 LAQPIAVRALSGLSLPTITHSTKPIKLITSGNHVENISFFLTDCSNTPVVLGHPWL 440
>gi|255563340|ref|XP_002522673.1| conserved hypothetical protein [Ricinus communis]
gi|223538149|gb|EEF39760.1| conserved hypothetical protein [Ricinus communis]
Length = 162
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 314 TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIF 354
+E+SL A+ G+ NT+++KG + + ILIDS STH F
Sbjct: 120 NVEISLHAIKGSGSMNTLKIKGMVNGKDILILIDSGSTHSF 160
>gi|158578544|gb|ABW74569.1| polyprotein [Boechera divaricarpa]
Length = 339
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 268 RAKGLCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETLE---VSLKA 321
RAKGLC+ DE++ H + K QL L+ D E + E+L E E ++ +SL A
Sbjct: 228 RAKGLCYYYDEKWSHAHMDEKHKNTQLYLIVDDDETDETCNESLPEGDEAVDCAQISLSA 287
Query: 322 LTGATPQNTMRL 333
++G+ NT+++
Sbjct: 288 MSGSMDYNTLKV 299
>gi|38344463|emb|CAE04934.2| OSJNBa0017P10.11 [Oryza sativa Japonica Group]
Length = 1012
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 396 SQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTG 450
SQG F DF L+P+ DI+LG +WL + D+ ++F G+ ++L G
Sbjct: 247 SQGHSFKGDFRLIPLGTYDIILGMDWLEQFSPMQIDWDNKWLEFQHLGKEIRLQG 301
>gi|77554298|gb|ABA97094.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 676
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 25/186 (13%)
Query: 273 CFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQN 329
CFNC E +C P+ + A + AE + PE + G P N
Sbjct: 129 CFNCGELGHFADKCPKPRRAGPWFVQARVNHAS--AEEAQAAPEVV-------LGTFPVN 179
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
++ T++ DS +TH F++ +G V + V G S+S +
Sbjct: 180 SI---------PATVIFDSGATHSFISKKFVGMHGL-VREELSTPMRVHTPGNSSTSVQF 229
Query: 390 S-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTVQ 447
S + + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 230 SPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANHTVTLTNEKGETVV 288
Query: 448 LTGYDS 453
DS
Sbjct: 289 YKSPDS 294
>gi|156065841|ref|XP_001598842.1| hypothetical protein SS1G_00931 [Sclerotinia sclerotiorum 1980]
gi|154691790|gb|EDN91528.1| hypothetical protein SS1G_00931 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 433
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 7/133 (5%)
Query: 259 LSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVS 318
LSV E+ RR LCF C + C + + + + +LE S
Sbjct: 258 LSVEEKKRRRENNLCFTCGKSGHMSRDCSQKKPFAAKGKKQVRFGTKKLGSREAGSLEGS 317
Query: 319 LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ-FQVTV 377
+ + + ++ NL+ V LIDS + IF++ AK+ G P +Q+T+
Sbjct: 318 FREI------GQLIIEVNLENQEVKALIDSGAMGIFMDPDFAKENGIPTEPKEHPYQLTL 371
Query: 378 ADGGVISSSGKCS 390
G + G S
Sbjct: 372 LGGKKVGVDGWTS 384
>gi|31432176|gb|AAP53838.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 80/402 (19%), Positives = 138/402 (34%), Gaps = 68/402 (16%)
Query: 103 LAALLETDVLSLAIGHLDGDAVPWYHWL----EQTMGNMTWAQFKRALVTQF-------- 150
L + E D + A L+G A W+ E+ G W +F A F
Sbjct: 81 LVRVREADKVIFAANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRM 140
Query: 151 -------------------GTFEDGDAVGTQNLP-ESFFISCFLSGLREDIK---IGVQM 187
F T++L E I F+ GL ++++ IG
Sbjct: 141 KKNEFRRLRQGNTTVQEYLNRFTQLARYATRDLADEEEKIDKFIEGLNDELRGPMIGQDH 200
Query: 188 LKPASLLQTFELARFQEEYAAVSNRRIPPRPSMSRPSPPLLNSSPTITKTGGSSQPSLLG 247
SL+ ++ R + + V + R R +M+R +P P T T + +P+++
Sbjct: 201 DSFQSLIN--KVVRLENDRKVVEHNR-KRRLAMNR-TPQTAPQRPKWT-TSSAWRPTVVT 255
Query: 248 PPPPGLPPFRRLSVAEQTERRAK----------GLCFNCDEQFKPGHRCKAPQLLLLDAD 297
P V Q A G CFNC E ++C P +
Sbjct: 256 TSRPAASSNFHRPVTIQNRAPAPNQAATGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTG 315
Query: 298 IEDKDEQAEA-------LEELPETLEVS----------LKALTGATPQNTMRLKGNLKKH 340
A L P+T + ++A Q + +L
Sbjct: 316 TNATAIHGTATPAAGRGLFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMFSLNST 375
Query: 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ 400
V + DS ++H F++ ++Q+ Q + + GG I+ C VP+ +
Sbjct: 376 PVKVPFDSGASHSFISLKASQQHNLTRVKLRQPMLVHSPGGEIAVDTACIDVPIRLRDVV 435
Query: 401 FHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
F + +L D++LG +WL + G I ++T+ W
Sbjct: 436 FPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPW 477
>gi|357438009|ref|XP_003589280.1| B3 domain-containing protein REM16 [Medicago truncatula]
gi|355478328|gb|AES59531.1| B3 domain-containing protein REM16 [Medicago truncatula]
Length = 423
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKC 389
T++L+G ++ V +L+DS +TH F++ L + +A+ S+G+
Sbjct: 291 TIKLRGRVEGVPVLLLVDSGATHNFISKKLV--------------IELANMYKTRSTGER 336
Query: 390 SHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAI 428
V V + + + + DIVLG WL S+G +
Sbjct: 337 KQVMVEMGKLKLEIGALVFDLDKVDIVLGTTWLNSIGEL 375
>gi|77555030|gb|ABA97826.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 17/177 (9%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ + QA E +V+ + + G P N+
Sbjct: 59 GSCFNCGEHGHFADKCPKPR------RAGPRFAQARVNHASAEEAQVAPEVVLGTFPVNS 112
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F+ +G + + V G S+S + S
Sbjct: 113 I---------PTTVLFDSGATHSFIGKKFVGIHGL-IREELSTPMRVHTLGNSSTSVQFS 162
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
+ + Q F + LL DI LG +WL ++ ++ KG+TV
Sbjct: 163 PSITIEIQRSPFLANLILLESKDLDINLGMDWLTKFKGVIDCVNRTVTLTNEKGETV 219
>gi|38346969|emb|CAE02265.2| OSJNBb0049I21.5 [Oryza sativa Japonica Group]
Length = 1644
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L D ++H F++ ++++ Q + + GG I+ C VP+ + F
Sbjct: 467 VKVLFDLGASHSFISLKASQRHNLTRVKLRQPMLVHSPGGEIAVDTACIDVPIRLRDVVF 526
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++LG +WL ++ G I ++T+ W
Sbjct: 527 PSNLMVLVPQTLDVILGMDWLTKNRGVIDCRRREVTLTTPW 567
>gi|38344560|emb|CAD39902.2| OSJNBa0065B15.6 [Oryza sativa Japonica Group]
Length = 1467
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 343 TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH 402
T+L DS +TH L+ S A +G V + V S + V + Q F
Sbjct: 538 TVLFDSGATHSLLSMSFAGNHGMEVEDLRRPLVVSTPSNQALSLQRSPSVRIEIQEVPFL 597
Query: 403 LDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQF-TWKGQTVQLTGYDSLPPALAN 460
+ LL D++LG +WL R G I K+T+ + TV +SL P+L
Sbjct: 598 ANLILLESKDPDVILGMDWLARYKGVIDCANRKVTLTSDDGRVVTVHALSSESLRPSL-- 655
Query: 461 HGEINQLLLQE 471
NQ+ L+E
Sbjct: 656 ----NQITLEE 662
>gi|116309026|emb|CAH66141.1| H0616A11.5 [Oryza sativa Indica Group]
Length = 1421
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 353 GSCFNCGELGHFADKCPKPRRTGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 403
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ + + + + V G S+S
Sbjct: 404 VNSI---------PATVLFDSGATHSFISKKFVRMHWL-IREELSTPMRVHTPGNSSTSV 453
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 512
Query: 446 V 446
V
Sbjct: 513 V 513
>gi|38346696|emb|CAE02181.2| OSJNBa0080E14.12 [Oryza sativa Japonica Group]
Length = 1476
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 260 SVAEQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELP 312
S +Q +R +G +CFNC + PGH +C P+ ++ Q+ +
Sbjct: 298 STQQQPAKREQGSKPVVCFNCGD---PGHYADKCPKPR------RVKVVPVQSNSTTPAS 348
Query: 313 ETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + A + + K + T+L S +TH FL+ S A +G V +
Sbjct: 349 KARVNHVAAAEAQDAPDVILCKFLVNLVPATVLFASGATHSFLSMSFAGNHGMEVEDLRR 408
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + QG F + LL D++LG +WL R G I
Sbjct: 409 PLMVSTPSNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCA 468
Query: 432 FSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQE 471
K+T+ G+ V + S + +NQ+ L+E
Sbjct: 469 NRKVTLTSN-DGRVVTIHALSS----ESLRSRLNQITLEE 503
>gi|34015131|gb|AAQ56328.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 964
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 333 LKGNLKKHG--VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
L G L H ++L DS +TH F+ A + P++ + + I +
Sbjct: 269 LVGTLLVHSYPASVLFDSGATHSFVTKGFASDHKLPISRLHPPLIVTSPDSEIIAEFISR 328
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
+ QG +F + +L G D++LG +W+
Sbjct: 329 DTKIAIQGVEFTAELTILHTKGLDVILGMDWM 360
>gi|77553944|gb|ABA96740.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1234
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 263 EQTERRAKG----LCFNCDEQFKPGH---RCKAPQLLLLDADIEDKDEQAEALEELPETL 315
+Q +R +G +CFNC + PGH +C P+ + K A++ +P +
Sbjct: 223 QQPAKREQGSKPVVCFNCGD---PGHYADKCPKPRRV--------KVVPAQSNSTVPAS- 270
Query: 316 EVSLKALTGATPQNTMR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQ 372
+ + + A Q+ + G + V +L DS +TH FL+ S A +G V +
Sbjct: 271 KARVNHVAAAEAQDAPDVILGTFLVNLVPAAVLFDSGATHSFLSMSFAGNHGMEVEDLRR 330
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWD 431
+ S + V + +G F + LL D++LG +WL R G I
Sbjct: 331 PLMVSTPSNQALSLQRSPSVRIEIKGVLFLANLILLESKDLDVILGMDWLARHKGVIDCA 390
Query: 432 FSKLTM 437
K+T+
Sbjct: 391 NRKVTL 396
>gi|301623808|ref|XP_002941205.1| PREDICTED: contactin-associated protein-like 4-like [Xenopus
(Silurana) tropicalis]
Length = 1966
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 169 FISCFLSGLREDIK-------IGVQMLKPASLLQTFELARFQEEYAAVSNRRIPPRPSMS 221
++ F GL E IK + Q + SL+ + +R +E + S R PP S+
Sbjct: 199 LVAAFWQGLNEGIKDELAARDLPTQFEQLVSLVIRID-SRIKERQSQKSRVRRPPVSSVL 257
Query: 222 RPSPPLLNSSPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFK 281
P SS PSLL P L RLS E+T RR+ GLCF C +
Sbjct: 258 LPE--------------SSSTPSLLAEEPMQLGA-TRLSPEERTRRRSAGLCFYCGQS-- 300
Query: 282 PGHRCKA 288
GH KA
Sbjct: 301 -GHILKA 306
>gi|326681142|ref|XP_003201727.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Danio rerio]
Length = 1317
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 71/186 (38%), Gaps = 42/186 (22%)
Query: 258 RLSVAEQTERRAKGLCFNCDEQFKPGH-------RCKAPQLLLLDADIEDKDEQAEALEE 310
RL+ AE+ R +GLC C GH R P + + DIE +
Sbjct: 171 RLTAAERQRRLTRGLCLYCGAG---GHVKLDCPLRPMRPSVSVFSFDIEKMN-------- 219
Query: 311 LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
P T +V L + + T LIDS S F++ SL +Q +
Sbjct: 220 -PLTTKVLLTTHSSSV--------------SATALIDSGSAGNFISHSLCRQLHLRTEAS 264
Query: 371 TQ-FQVTVADGGVISSS---GKCSHVPVNSQGFQFH---LDFFLLPVSGCDIVLGAEWLR 423
T +Q+ + S + KC PV+ Q H + F +L + DI+LG WL
Sbjct: 265 THIYQIQPITNNIKSQARIHRKCE--PVSLQIGWLHKEDIQFLVLEGATMDIILGRPWLV 322
Query: 424 SLGAIL 429
IL
Sbjct: 323 KHDPIL 328
>gi|449492766|ref|XP_004159094.1| PREDICTED: uncharacterized protein LOC101231524 [Cucumis sativus]
Length = 993
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 375 VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSK 434
V +A GG S G QG F + + + G DI+LG +WL +LG D+ K
Sbjct: 369 VEIALGGNFSLWG---------QG-HFGVGYCCERLGGVDIILGMQWLHTLGVTEVDWRK 418
Query: 435 LTMQFTWKGQTVQLTGYDSLPPALANHGEINQLLLQEKQGIFFQIMAI 482
LT+ F + V + G SL + + + + QG + A+
Sbjct: 419 LTLTFIQNEKNVVIRGDPSLTKTRVSWKHMMKTWIPSDQGFLIECRAL 466
>gi|77548510|gb|ABA91307.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1284
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++++F++ ++Q+ Q + + GG I+ C VP+ + F
Sbjct: 377 VKVLFDSGASYLFISLKASQQHNLTRVKLRQPMLVHSPGGEIAVDTACIDVPIRLRDVVF 436
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTMQFTW 441
+ +L D++L +WL + G I ++T+ W
Sbjct: 437 PSNLMVLIPQTLDVILAMDWLAKHRGVIDCRRREVTLTTPW 477
>gi|116317768|emb|CAH65747.1| OSIGBa0102B11.1 [Oryza sativa Indica Group]
Length = 1601
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
T+L DS +TH FL+ A +G V + + S + V + +G F
Sbjct: 623 ATVLFDSGATHSFLSMRFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPF 682
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+ LL D++LG +WL R G I K+T+
Sbjct: 683 LANLILLESKDLDVILGMDWLARHKGVIDCANRKVTL 719
>gi|326674339|ref|XP_003200115.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 71/186 (38%), Gaps = 42/186 (22%)
Query: 258 RLSVAEQTERRAKGLCFNCDEQFKPGH-------RCKAPQLLLLDADIEDKDEQAEALEE 310
RL+ AE+ R +GLC C GH R P + + DIE +
Sbjct: 240 RLTAAERQRRLTRGLCLYCGAG---GHVKLDCPLRPMRPSVSVFSFDIEKMN-------- 288
Query: 311 LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
P T +V L + + T LIDS S F++ SL +Q +
Sbjct: 289 -PLTTKVLLTTHSSSV--------------SATALIDSGSAGNFISHSLCRQLHLRTEAS 333
Query: 371 TQ-FQVTVADGGVISSS---GKCSHVPVNSQGFQFH---LDFFLLPVSGCDIVLGAEWLR 423
T +Q+ + S + KC PV+ Q H + F +L + DI+LG WL
Sbjct: 334 THIYQIQPITNNIKSQARIHRKCE--PVSLQIGWLHKEDIQFLVLEGATMDIILGRPWLV 391
Query: 424 SLGAIL 429
IL
Sbjct: 392 KHDPIL 397
>gi|326672934|ref|XP_003199760.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 71/186 (38%), Gaps = 42/186 (22%)
Query: 258 RLSVAEQTERRAKGLCFNCDEQFKPGH-------RCKAPQLLLLDADIEDKDEQAEALEE 310
RL+ AE+ R +GLC C GH R P + + DIE +
Sbjct: 240 RLTAAERQRRLTRGLCLYCGAG---GHVKLDCPLRPMRPSVSVFSFDIEKMN-------- 288
Query: 311 LPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT 370
P T +V L + + T LIDS S F++ SL +Q +
Sbjct: 289 -PLTTKVLLTTQSSSV--------------SATALIDSGSAGNFISHSLCRQLHLRTEAS 333
Query: 371 TQ-FQVTVADGGVISSS---GKCSHVPVNSQGFQFH---LDFFLLPVSGCDIVLGAEWLR 423
T +Q+ + S + KC PV+ Q H + F +L + DI+LG WL
Sbjct: 334 THIYQIQPITNNIKSQARIHRKCE--PVSLQIGWLHKEDIQFLVLEGATMDIILGRPWLV 391
Query: 424 SLGAIL 429
IL
Sbjct: 392 KHDPIL 397
>gi|38346261|emb|CAE02083.2| OSJNBa0074B10.11 [Oryza sativa Japonica Group]
Length = 1243
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ I+ + A A EE EV L+ P N+
Sbjct: 59 GSCFNCGELGHFADKCPKPRRAG-PRFIQARVNHASA-EEAQAAPEVVLRTF----PVNS 112
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ +G + + V G S+S + S
Sbjct: 113 I---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMWVHTPGNSSTSVQFS 162
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
+ + Q F + LL D++LG +WL ++ D + T+ T KG+TV
Sbjct: 163 PSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETV 219
>gi|147835239|emb|CAN67792.1| hypothetical protein VITISV_001313 [Vitis vinifera]
Length = 1414
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT-- 330
CF CD P P+ L+A IE+K+++ +A + L TPQ+
Sbjct: 379 CFLCD---GPHWARDCPKRKALNAMIEEKEQEGDAKVGSLQLLNXLKAKSMFKTPQSKRL 435
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG--GVISSSGK 388
M ++ + L+D+ +TH F+ A++ + Q + G ++S+ K
Sbjct: 436 MYVEALVNGKATKALVDTGATHNFVAEDEARR--------LELQASKEGGWLKAVNSAAK 487
Query: 389 CSH-----VPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAI 428
SH V ++ ++ +DF + P+ +VLG ++L+ + A+
Sbjct: 488 PSHGVARGVSMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAV 532
>gi|21743218|emb|CAD40073.1| OSJNBa0085C10.26 [Oryza sativa Japonica Group]
Length = 561
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 19/208 (9%)
Query: 247 GPPPPGLPPFRRLSVAEQTERRAK-GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQA 305
P PP P S + E AK G CFNC E +C P + + QA
Sbjct: 219 APRPPMAPAQSAPSAQAKKETGAKPGSCFNCGEHGHFADKCPKP------SRAGARFAQA 272
Query: 306 EALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC 365
E + + + + G P N++ T+L DS +TH F++ +G
Sbjct: 273 RVNHASAEEAQAAPEVVLGTFPVNSV---------PSTVLFDSGATHSFISKKFVGMHGL 323
Query: 366 PVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSL 425
+ G +S + + Q F + L D++LG +WL
Sbjct: 324 RKEELSTPMRVHTPGNSSTSVSYSPSMLIEIQRSPFLANLILHESKDQDVILGMDWLTKF 383
Query: 426 GAILWDFSKLTMQFTWKGQTVQLTGYDS 453
++ D + T+ T + V+ Y S
Sbjct: 384 KGVI-DCANRTVTLT--NEKVETVVYKS 408
>gi|297609080|ref|NP_001062636.2| Os09g0135100 [Oryza sativa Japonica Group]
gi|255678697|dbj|BAF24550.2| Os09g0135100 [Oryza sativa Japonica Group]
Length = 404
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 268 RAKGLCFNCDEQFKPGHRC---KAPQLLLLDADIEDK---DEQAEA---LEELPETLEVS 318
+ GLCF C +++ P H C + PQL ++ + + DE + LE PE + +S
Sbjct: 217 KTHGLCFKCGDKYAPRHVCAKQEGPQLKAMEVEQNSEMLTDEMLDVVACLETQPENMLLS 276
Query: 319 LKALTGATPQNTMRLKGNL 337
++A++G+ T++L+ L
Sbjct: 277 IQAISGSVAPKTIQLRALL 295
>gi|108709317|gb|ABF97112.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 566
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 17/160 (10%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFNC E +C P+ E + QA E + + + + G P N+
Sbjct: 209 GSCFNCGELGHFADKCPKPR------RAEPRFVQARVNHASAEEAQAAPEVVLGTFPINS 262
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ +G + + V G S+S + S
Sbjct: 263 I---------PATVLFDSGATHSFISKKFIGMHGL-IREELSTPMRVHTLGNSSTSVQFS 312
Query: 391 -HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ + Q F + L D++LG +WL ++
Sbjct: 313 PSITIEIQRSPFLANLILFESKDLDVILGMDWLTKFKGVI 352
>gi|425777956|gb|EKV16106.1| Retrotransposon polyprotein, putative [Penicillium digitatum Pd1]
Length = 1695
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 163 NLPESFFISCFLSGLREDIKIGVQML-KPASLLQTFELARFQEEYAAVSNR---RIPPRP 218
+LP+ +I F +GL+ ++K + + +P +L Q +A + NR R R
Sbjct: 187 DLPDRAYIPYFEAGLKSEVKDELARIDRPDNLDQLIAIA------VKIDNRINERRYERK 240
Query: 219 SMS---RPSPPLLNS-SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCF 274
M R LN + P GP P L + EQ ERR K LCF
Sbjct: 241 EMDQWKRGKTHGLNRFGHGRRENRAPRDPDPYGPKPMELD----ATQEEQKERRQKNLCF 296
Query: 275 NCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEEL------PETLEVSLKALTGA 325
C KPGHR CK + + E+ A E+ E LE L
Sbjct: 297 TCG---KPGHRAFECKQKKPFEKRQHMRATREELRATREVRSDYPGTEALEDLLARWGTL 353
Query: 326 TPQNTMRLKGNLKKHGV 342
+P+ T L GNL G+
Sbjct: 354 SPEET--LAGNLCTEGL 368
>gi|255559212|ref|XP_002520627.1| conserved hypothetical protein [Ricinus communis]
gi|223540188|gb|EEF41763.1| conserved hypothetical protein [Ricinus communis]
Length = 151
Score = 40.0 bits (92), Expect = 2.7, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 72 LVQPRHIRLDFLVLSGENPTSLIFRCEQYQRLAALLETD------VLSLAIGHLDGDAVP 125
+ + R +L+F + G++PT R EQY E+ ++S +G V
Sbjct: 1 MFESRPAKLEFPIFQGDDPTVWNTRAEQYFDFQMTTESKKYLWRLIISKRAYKNEGKVVT 60
Query: 126 WYHWLEQTMGNMTWAQFKRAL----------VTQFGTFED--------GDAVGTQNLPES 167
W +E+ WA+F RA + Q G+ D G+ V +
Sbjct: 61 WDALVEEL-----WARFGRAKGENFDEALSKIRQTGSLRDYQRQFEQLGNRV--HGWTQK 113
Query: 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE 205
+ F+ GL+ +I ++ KP +L + AR +++
Sbjct: 114 ALVGTFIGGLKPEIADAIRFFKPKTLKDAIDYARMKDQ 151
>gi|38347459|emb|CAD40090.2| OSJNBb0012A12.12 [Oryza sativa Japonica Group]
Length = 1581
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 13/171 (7%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G+C NC + + +C P+ + K A++ P + + + + A Q
Sbjct: 418 GVCINCGDPGRYSDKCPKPRRV--------KVVPAQSNSTAPAS-KARVNHVAAAEAQGA 468
Query: 331 MR-LKGNLKKHGV--TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
+ G + V T+L DS +TH FL+ S A +G V + + S
Sbjct: 469 PDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQ 528
Query: 388 KCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL-RSLGAILWDFSKLTM 437
+ V + Q F + LL D++LG +WL R G I K+T+
Sbjct: 529 RSPSVRIEIQEVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTL 579
>gi|108710077|gb|ABF97872.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1299
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQF 401
V +L DS ++H F++ ++++ + + + + G I+ S C VP+ + F
Sbjct: 329 VKVLFDSGASHSFISLKASQKHNLALVGLRKPMIVHSPRGEITVSHACIDVPIRLRNVVF 388
Query: 402 HLDFFLLPVSGCDIVLGAEWL-RSLGAI 428
+ +L D++LG WL ++ G I
Sbjct: 389 PSNLMVLIPKTLDVILGMNWLTKNRGVI 416
>gi|21672025|gb|AAM74387.1|AC119149_2 Putative retroelement [Oryza sativa Japonica Group]
Length = 447
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 293 LLDADIEDKDEQAEALEELPE--TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
LLD D D LEEL E + +S +A++G + RL+G ++ V + ++S S
Sbjct: 34 LLDILHPDVDFVEAELEELDEGNLMAISQQAVSGTESATSFRLRGWVQGTKVLMPVNSRS 93
Query: 351 THIFLNSSLAKQY 363
+H F++SSLA ++
Sbjct: 94 SHSFIDSSLAHRF 106
>gi|94502631|ref|YP_588337.1| hypothetical protein ZeamMp075 [Zea mays subsp. mays]
gi|40795070|gb|AAR91114.1| hypothetical protein (mitochondrion) [Zea mays]
Length = 126
Score = 40.0 bits (92), Expect = 3.0, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 145 ALVTQFGTFEDGDAVGTQNLPESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204
A + +F F T L E +F+ CF++GLR DIK ++ L P SL + A+ E
Sbjct: 30 AYIDKFEDFMTMLKQDTPELTEEWFVKCFVNGLRHDIKHQLRPLHPESLTDAYWQAKDME 89
Query: 205 EYAAVSNRRIPPRPSMS 221
R PP+ S
Sbjct: 90 -------RSAPPKKQFS 99
>gi|110288860|gb|ABB47127.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 392
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 293 LLDADIEDKDEQAEALEELPE--TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
LLD D D LEEL E + +S +A++G + RL+G ++ V + ++S S
Sbjct: 34 LLDILHPDVDFVEAELEELDEGNLMAISQQAVSGTESATSFRLRGWVQGTKVLMPVNSRS 93
Query: 351 THIFLNSSLAKQY 363
+H F++SSLA ++
Sbjct: 94 SHSFIDSSLAHRF 106
>gi|353238834|emb|CCA70767.1| related to TY3B-TY3B protein [Piriformospora indica DSM 11827]
Length = 2540
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 257 RRLSVAEQTERRAKGLCFNCDEQFKPGHRC------KAPQLLLLDADIEDKDEQAEALEE 310
RRL+ E E RAKG CFNC E H C + P+L+ + D QA+ +
Sbjct: 760 RRLTAEEMEEHRAKGQCFNCHETGHRAHDCPKRNQLRPPKLISGSITFDQIDAQAKDVTN 819
Query: 311 L 311
L
Sbjct: 820 L 820
>gi|18425261|gb|AAL69439.1|AC098565_21 Putative polyprotein [Oryza sativa]
Length = 1181
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 264 QTERRAK-GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSL 319
+ E AK G CFNC E +C P+ + A + AE + PE +
Sbjct: 345 KKETEAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV---- 398
Query: 320 KALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVAD 379
G P N++ T+L DS +TH F++ +G + + V
Sbjct: 399 ---LGTFPVNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHT 445
Query: 380 GGVISSSGKCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQ 438
G S+S + S + + Q + LL D++LG +WL ++ D + T+
Sbjct: 446 PGNSSTSVQFSPSITIEIQRSPVLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVT 504
Query: 439 FT-WKGQTV 446
T KG+TV
Sbjct: 505 LTNEKGETV 513
>gi|22725909|gb|AAN04919.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31430212|gb|AAP52158.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1719
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 600 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFP 650
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 651 VNSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 700
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 701 QFSPSITIEIQRSPVLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 759
Query: 446 V 446
V
Sbjct: 760 V 760
>gi|147769722|emb|CAN69702.1| hypothetical protein VITISV_020318 [Vitis vinifera]
Length = 1454
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 6/158 (3%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT-- 330
CF CD P P+ L+A IE+K+++ +A + L PQ+
Sbjct: 295 CFLCD---GPHWARDCPKRKALNAMIEEKEQEGDAKMGSLQLLNALKAKPMPKMPQSKGL 351
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
M ++ + L+D+ +TH F++ A++ + + + + S G
Sbjct: 352 MYVEALVNGKATKALVDTGATHNFVSKDEARRLELQASKEGGW-LKAVNSAAKPSHGVAR 410
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAI 428
V ++ ++ +DF + P+ +VLG ++L+ + A+
Sbjct: 411 EVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVXAV 448
>gi|425779965|gb|EKV17988.1| Retrotransposon polyprotein, putative [Penicillium digitatum PHI26]
Length = 1822
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 163 NLPESFFISCFLSGLREDIKIGVQML-KPASLLQTFELARFQEEYAAVSNR---RIPPRP 218
+LP+ +I F +GL+ ++K + + +P +L Q +A + NR R R
Sbjct: 205 DLPDRAYIPYFEAGLKSEVKDELARIDRPDNLDQLIAIA------VKIDNRINERRYERK 258
Query: 219 SM---SRPSPPLLNS-SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCF 274
M R LN + P GP P L + EQ ERR K LCF
Sbjct: 259 EMDQWKRGKTHGLNRFGHGRRENRAPRDPDPYGPKPMELD----ATQEEQKERRQKNLCF 314
Query: 275 NCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEEL------PETLEVSLKALTGA 325
C KPGHR CK + + E+ A E+ E LE L
Sbjct: 315 TCG---KPGHRAFECKQKKPFEKRQHMRATREELRATREVRSDYPGTEALEDLLARWGTL 371
Query: 326 TPQNTMRLKGNLKKHGV 342
+P+ T L GNL G+
Sbjct: 372 SPEET--LAGNLCTEGL 386
>gi|21593259|gb|AAM65208.1| unknown [Arabidopsis thaliana]
Length = 272
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+++ V G N S + R E+Y + + + L ++G A+ W++ LE +
Sbjct: 113 KIEMPVFEGPNVNSWLTRAERYFEFGSFTNAEKIQLVYMSVEGPALCWFN-LENRNPFVD 171
Query: 139 WAQFKRALVTQFG----------TFEDGDAV----------GTQNLP--ESFFISCFLSG 176
W FK ++ +FG T + D+V TQ L ++ F+ G
Sbjct: 172 WNDFKARVLQRFGDPRSAMERLLTLKQVDSVISYLGEFEDLSTQCLDDLDTVLEVVFVKG 231
Query: 177 LREDIKIGVQMLKPASLLQTFELAR 201
L+E+I+ +++ +P L +AR
Sbjct: 232 LKEEIQEMLRVFQPKGLSDIIMMAR 256
>gi|425779964|gb|EKV17987.1| Retrotransposon polyprotein, putative [Penicillium digitatum PHI26]
Length = 1791
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 163 NLPESFFISCFLSGLREDIKIGVQML-KPASLLQTFELARFQEEYAAVSNR---RIPPRP 218
+LP+ +I F +GL+ ++K + + +P +L Q +A + NR R R
Sbjct: 205 DLPDRAYIPYFEAGLKSEVKDELARIDRPDNLDQLIAIA------VKIDNRINERRYERK 258
Query: 219 SM---SRPSPPLLNS-SPTITKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCF 274
M R LN + P GP P L + EQ ERR K LCF
Sbjct: 259 EMDQWKRGKTHGLNRFGHGRRENRAPRDPDPYGPKPMELD----ATQEEQKERRQKNLCF 314
Query: 275 NCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEEL------PETLEVSLKALTGA 325
C KPGHR CK + + E+ A E+ E LE L
Sbjct: 315 TCG---KPGHRAFECKQKKPFEKRQHMRATREELRATREVRSDYPGTEALEDLLARWGTL 371
Query: 326 TPQNTMRLKGNLKKHGV 342
+P+ T L GNL G+
Sbjct: 372 SPEET--LAGNLCTEGL 386
>gi|77555748|gb|ABA98544.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1112
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G P
Sbjct: 59 GSCFNCGEHGHFADKCPKPRRAGPRFVQAHVNHAS--AEEAQPAPEVV-------LGTFP 109
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC---PVTTTTQFQVTVADGGVIS 384
N++ T+L DS +TH F++ +G ++T + ++S
Sbjct: 110 INSV---------PATVLFDSGATHSFISKKFVGIHGLRKEELSTPMRVHTPGNSSTLVS 160
Query: 385 SSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKG 443
S V + +F + LL D++LG +W+ ++ D + T+ T KG
Sbjct: 161 YS---PSVLIEIHRSRFLANLILLESKDLDVILGMDWMTKFKGVI-DCANRTVTLTNEKG 216
Query: 444 QTV 446
+TV
Sbjct: 217 ETV 219
>gi|62732982|gb|AAX95101.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77548872|gb|ABA91669.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1314
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 261 VAEQTERRAKGLCFNCDEQFKPGHRCK-------APQLLLL--DADIEDKDEQAEALEEL 311
A + R +KGLC C E+ +RC +LL L D+ + D +A +
Sbjct: 227 AALRAYRCSKGLCHTCGEKRSQEYRCGPTVQLHVVEELLQLFPSEDVVESDTN-DATPDE 285
Query: 312 PET---LEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSST----------HIFLNSS 358
PET L +S +A+ G TMRL+G +++H V + +S ST + L
Sbjct: 286 PETEELLAISREAVLGIESPKTMRLQGLIQRHEVLMPGESFSTPLKVLPLGCYEVILGMD 345
Query: 359 LAKQYGCPVT-----TTTQFQ---VTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPV 410
+++ P+ T QFQ V GVI + C V N H + L V
Sbjct: 346 WLERHS-PMQIDWKLKTLQFQWQNRQVTLQGVIPDTSDCPPVTCNQLKGLLHHNVVLQAV 404
Query: 411 SGCDI 415
+ C +
Sbjct: 405 ALCPV 409
>gi|147853302|emb|CAN78544.1| hypothetical protein VITISV_028082 [Vitis vinifera]
Length = 594
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT-- 330
CF CD P P+ L+A IE+K+++ +A + L TPQ+
Sbjct: 352 CFLCD---GPHWARDYPKRKALNAMIEEKEQEGDAKMGSLQLLNALKAKPMPKTPQSKGL 408
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG--GVISSSGK 388
M ++ + L+D+ +TH F++ A++ + Q + G ++S+ K
Sbjct: 409 MYVEALVNGKVTKALVDTGATHNFVSEEKARRL--------ELQASKEGGWLKAVNSAAK 460
Query: 389 CSH-----VPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAI 428
SH V ++ ++ +DF + P+ +VLG ++L+ + A+
Sbjct: 461 PSHEVACGVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAV 505
>gi|156047683|ref|XP_001589809.1| hypothetical protein SS1G_09531 [Sclerotinia sclerotiorum 1980]
gi|154693926|gb|EDN93664.1| hypothetical protein SS1G_09531 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 960
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 332 RLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT-TQFQVTVADGGVISSSGKCS 390
++KG + + +IDS +T F+ AK G + T T +Q+ + DG + GK S
Sbjct: 472 KIKGQI----IRAMIDSGATGNFIAPKTAKYLGVQLQTKQTPYQLQLVDGQLAGLDGKIS 527
Query: 391 HVPVNSQGFQFHLD-------FFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKG 443
++ Q +D F ++P+ I+LG WL++ +Q W
Sbjct: 528 Q---ETRSVQMIIDQHKEIIQFDVVPLGNQSIILGMPWLKA----------HNLQIDWLW 574
Query: 444 QTVQLTG----YDSLPPALAN 460
+TV D+L PA N
Sbjct: 575 ETVTFPNKSDQRDTLEPARLN 595
>gi|19881567|gb|AAM00968.1|AC021892_32 Putative retroelement [Oryza sativa Japonica Group]
Length = 538
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 293 LLDADIEDKDEQAEALEELPE--TLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSS 350
LLD D D LEEL E + +S +A++G + RL+G ++ V + ++S S
Sbjct: 156 LLDILHPDVDFVEAELEELDEGNLMAISQQAVSGTESATSFRLRGWVQGTKVLMPVNSRS 215
Query: 351 THIFLNSSLAKQY 363
+H F++SSLA ++
Sbjct: 216 SHSFIDSSLAHRF 228
>gi|77553274|gb|ABA96070.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 373
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 290 QLLLLD-ADIEDKDEQAEALEELPET-LEVSLKALTGATPQNTMRLKGNLKKHGVTILID 347
L LL+ A +D ++ EE T VSL A+ G +TM++ N+ + L+D
Sbjct: 251 HLFLLNLATPDDNNDDDSTPEETGGTNTHVSLHAIAGVRFNDTMQVHINMGGTNLLALLD 310
Query: 348 SSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG--KCSHVPVNSQGFQFHLDF 405
S TH F++++ A + + QV VA+G +S G + + +++ FQ L F
Sbjct: 311 SGFTHNFVSTAAASLTKLKLLPNGKMQVMVANGEYVSCPGLYRNTAFTTDTETFQIMLRF 370
>gi|393237617|gb|EJD45158.1| hypothetical protein AURDEDRAFT_165701 [Auricularia delicata
TFB-10046 SS5]
Length = 180
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 284 HRCKAPQLLLLDA--DIEDKDEQAEAL---EELPETLEVSLKALTGATPQNTMRLKGNLK 338
HR ++ L+D D+ED ++ + + + LP T L A + P M + +++
Sbjct: 3 HRTPVGEVHLIDVNGDVEDVNDVFQVVNWEQRLPRTASGDLAA-HDSLP--LMAITASIE 59
Query: 339 KHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQG 398
+ + +ID+ T ++ + K+ GCPV T ++ A+G V + + +G
Sbjct: 60 NNAIETIIDTGLTICCMSDRVWKKIGCPVYTEKVTKMRDANGNVAGTLSAVLDQAIVIEG 119
Query: 399 FQFHLDFFLLPVSGCDIVLG 418
+F+ ++P + ++LG
Sbjct: 120 LKFYTTIHVVPNTPFSLILG 139
>gi|147772919|emb|CAN64786.1| hypothetical protein VITISV_014071 [Vitis vinifera]
Length = 1217
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT-- 330
CF CD P P+ L+A I++K+ + +A + L TPQ+
Sbjct: 78 CFLCD---GPHWARDCPKRKALNAMIKEKENEGDAQVGSLQLLNALKAKPIPKTPQSKGL 134
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV--ISSSGK 388
M ++ + L+D+ +TH F++ A++ + Q + G + ++S+ K
Sbjct: 135 MYVEAIVNGKATKALVDTGATHNFVSEDEARR--------LELQASKEGGWLKAVNSTAK 186
Query: 389 CSH-----VPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAI 428
SH V ++ ++ +DF + P+ +VLG ++L+ + A+
Sbjct: 187 PSHGVARGVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAV 231
>gi|413918525|gb|AFW58457.1| hypothetical protein ZEAMMB73_907541 [Zea mays]
Length = 1065
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 210 SNRRIPPRPSMSRPSP-----PLLNSSPTITKTGGSSQPSLLGPPPPG 252
++RR PP PS S SP N+SPT+ + P+L GPPPP
Sbjct: 904 NDRRAPPPPSRSARSPVDASHRATNASPTLQPPNAQADPNLQGPPPPS 951
>gi|14018099|gb|AAK52162.1|AC084831_16 putative polyprotein [Oryza sativa Japonica Group]
gi|108709291|gb|ABF97086.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1461
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 29/216 (13%)
Query: 235 TKTGGSSQPSLLGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLL-- 292
+ G +S+P + P G P + A++ G CFNC E +C P+
Sbjct: 323 SNRGAASRPPM-APAQSGPP-----AQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGP 376
Query: 293 -LLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSST 351
+ A + AE + PE + G P N++ T+L DS +T
Sbjct: 377 RFIQARVNHAS--AEEAQAAPEVV-------LGTFPVNSI---------PATVLFDSGAT 418
Query: 352 HIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS-HVPVNSQGFQFHLDFFLLPV 410
H F++ + + + V G S+S + S + + Q F + LL
Sbjct: 419 HSFISKKFVGMH-LLIREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLES 477
Query: 411 SGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTV 446
D++LG +WL ++ ++ KG+TV
Sbjct: 478 KDLDVILGMDWLTKFKGVIDCANRTVTLINEKGETV 513
>gi|32479947|emb|CAE01593.1| OSJNBa0008A08.1 [Oryza sativa Japonica Group]
gi|38567677|emb|CAE75960.1| B1159F04.23 [Oryza sativa Japonica Group]
gi|38605814|emb|CAE05221.3| OSJNBa0011K22.3 [Oryza sativa Japonica Group]
gi|125547771|gb|EAY93593.1| hypothetical protein OsI_15380 [Oryza sativa Indica Group]
gi|125589904|gb|EAZ30254.1| hypothetical protein OsJ_14304 [Oryza sativa Japonica Group]
Length = 157
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 88 ENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMTWAQFKRALV 147
+ P SL+ CEQ+ ++E D+L LA H+ G+A W E+ G +W F
Sbjct: 81 QEPLSLLKICEQFLHGHKVMEEDILWLASYHMIGNAQCWNIHFEEEEGEPSWPHFSERGA 140
Query: 148 TQF 150
QF
Sbjct: 141 PQF 143
>gi|77554637|gb|ABA97433.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1672
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + AE + PE + G
Sbjct: 543 GSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS--AEEAQAAPEVV-------LGTFS 593
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ T+L DS +TH F++ +G + + V G S+S
Sbjct: 594 INSI---------PATVLFDSGATHSFISKKFVGMHGL-IREELSTPMRVHTPGNSSTSV 643
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T KG+T
Sbjct: 644 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 702
Query: 446 V 446
V
Sbjct: 703 V 703
>gi|147860873|emb|CAN81056.1| hypothetical protein VITISV_033320 [Vitis vinifera]
Length = 997
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 252 GLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCK-APQLLLLDADIEDKDEQAEALEE 310
G P + +QT R A CF C+ HR + P+ L A + D+ E+ E
Sbjct: 247 GKPMEKTTKFVQQTTRVAG--CFICNSP----HRARDYPKREKLSALVT-ADDNGESDSE 299
Query: 311 LPETLEVS----LKALTGATP--QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYG 364
P L V+ L + G TP ++ M + + V L+DS +TH F+ + A + G
Sbjct: 300 TP--LRVNPLQFLNVINGETPVQKSLMHVHAVVNGVQVKALMDSGATHNFVATRKATRLG 357
Query: 365 CPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWL 422
+ T ++ + G +VP+ ++ + +P+ D++LG ++L
Sbjct: 358 LKLEEDTS-RIKAINSKAQKIQGVAKNVPMQIGDWKGTCNLLCVPLDDFDLILGVDFL 414
>gi|15212099|emb|CAC51363.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 8/171 (4%)
Query: 273 CFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMR 332
C NC + C AP+ +E A A + A G N ++
Sbjct: 95 CHNCRKSEHMERDCTAPK-------VEPVVNVARATRPTARGRIYCMNAEEGNPSGNLIQ 147
Query: 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHV 392
+ + +T L DS +TH F+ + V+ V ++ + C H
Sbjct: 148 RDCEIAGNTLTALFDSGATHSFIAMDCVNRLKLSVSALPFDLVVSTPDKTLTVNSACLHC 207
Query: 393 PVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKG 443
+ Q ++ LP+ +++LG +W+ S ++ D ++ + F G
Sbjct: 208 RMTIQNRDLLVNLICLPLQSLEVILGMDWM-SYHYVILDCARKLVIFPEPG 257
>gi|4325361|gb|AAD17358.1| contains similarity to reverse transcriptase (Pfam: PF00078,
Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc fingers
(Pfam: PF00098, Score=18.3, E=0.024, N=2) [Arabidopsis
thaliana]
Length = 901
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 294 LDADIEDKDEQAEALEELPETLEVSLKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHI 353
LD + D ++AE T E G N L G ++ H +L DS ++H
Sbjct: 188 LDHKVADCTQRAE-------TRECYHCRERGHLRPNWTLLVGGVEAH---VLFDSGASHC 237
Query: 354 FLNSSLAKQYGCPVTTTTQFQVTVADGG-VISSSGKCSHVPVNSQGFQFHLDFFLLPVSG 412
F+ A + QF DGG ++ G+ V + +G D + PV
Sbjct: 238 FITFESASRGNIRGDPGEQFGAVKVDGGQFLAVLGRAKGVDIQIEGESMPADLIISPVEL 297
Query: 413 CDIVLGAEWL 422
D++L +WL
Sbjct: 298 YDVILRMDWL 307
>gi|124360391|gb|ABN08404.1| Retrotransposon gag protein [Medicago truncatula]
gi|124360393|gb|ABN08406.1| Retrotransposon gag protein [Medicago truncatula]
Length = 224
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 79 RLDFLVLSGENPTSLIFRCEQYQRLAALLETDVLSLAIGHLDGDAVPWYHWLEQTMGNMT 138
+++ L+ +G++P I R E Y + ++LA +DG + ++ L + +T
Sbjct: 83 KVELLMFNGDDPAGWIARAEVYFNVQNTTPEIKVNLAQLCMDGPTIHFFKGLLEENETLT 142
Query: 139 WAQFKRALVTQFGTFEDGDAV---------GT---------------QNLPESFFISCFL 174
W K AL+ ++G DG+ GT LP ++ F+
Sbjct: 143 WEDLKDALLERYGGVSDGNVFEQLSALQQEGTIEEYIADFERLVAQLPKLPNDQYLGYFV 202
Query: 175 SGLREDIKIGVQML 188
GL++ I+ V+ +
Sbjct: 203 HGLKDKIRGKVRSM 216
>gi|38567682|emb|CAE75972.1| B1160F02.3 [Oryza sativa Japonica Group]
Length = 1430
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 28/188 (14%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLL---LLDADIEDKDEQAEALEELPETLEVSLKALTGATP 327
G CFNC E +C P+ + A + + EE PE + G P
Sbjct: 511 GTCFNCGELGHFADKCPKPRRAGPRFVQARVNHA-----SAEEAPEVV-------LGTFP 558
Query: 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG 387
N++ +L D +TH F++ + +G V + V G S+S
Sbjct: 559 VNSI---------PTIVLFDYGATHSFISKKFVRMHGL-VREELSTPMWVHTPGNSSTSV 608
Query: 388 KCS-HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQT 445
+ S + + Q F + LL D++LG +WL ++ D + T+ T K +T
Sbjct: 609 QFSPSITIEIQRSSFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKRET 667
Query: 446 VQLTGYDS 453
V DS
Sbjct: 668 VVYKSPDS 675
>gi|77554851|gb|ABA97647.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1656
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 347 DSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFF 406
D+ ++H F++ + V + GG +++ VP+ QG F D
Sbjct: 595 DAQASHSFISVPFVGRNQLGVERLRNPLLITTPGGDMTAKYYSPAVPIEIQGIPFPSDLI 654
Query: 407 LLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPPALANHGEINQ 466
LL D++LG WL ++ D ++ T+ ++G + + PP E++Q
Sbjct: 655 LLDTKNLDVILGMNWLAQFQGVV-DCARRTVTL-YRGPEQPVVFF--APPTSVGSSELHQ 710
Query: 467 LLLQE 471
+ L E
Sbjct: 711 IGLSE 715
>gi|62734409|gb|AAX96518.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550068|gb|ABA92865.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 17/177 (9%)
Query: 271 GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQNT 330
G CFN E ++C P+ K QA E + + + + G P N+
Sbjct: 21 GACFNYGESGHFANKCPKPR------RAGPKFVQARVNHASTEEAQAAPEVVLGTFPVNS 74
Query: 331 MRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCS 390
+ T+L DS +TH F++ +G + G +S
Sbjct: 75 I---------PATVLFDSDATHSFISKKFVGVHGLRKEELSTPMRVHTPGNSSTSVSYSP 125
Query: 391 HVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFT-WKGQTV 446
V + Q +F + LL D++LG +WL ++ D + T+ T KG+T+
Sbjct: 126 SVLIEIQISRFLPNLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGETM 181
>gi|224140615|ref|XP_002323677.1| predicted protein [Populus trichocarpa]
gi|222868307|gb|EEF05438.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 22/178 (12%)
Query: 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEE--YAAVSNRRIPPRPSMSRP 223
E+ I+ F GL++DI+ ++ML +L Q F+LAR EE A R + + P
Sbjct: 252 ENMQIARFRGGLKQDIQDQMKMLNTFTLGQAFDLARKAEEPIRAPSVRPRFTNQQYQAGP 311
Query: 224 SPPLLNSSPTITKTGGSSQPSLLGP---PPPGLPPFRRLSVAEQTERRAKGLCFNCDEQF 280
S + P+ ++P P P P P LC+ C +
Sbjct: 312 SRVTPTTEPSNGTVATENRPRRAAPQQAPNPYARPM-------------PSLCYRCHQSG 358
Query: 281 KPGHRC-KAPQLLLLDADIE---DKDEQAEALEELPETLEVSLKALTGATPQNTMRLK 334
++C + P + ++ D E D D E ++ + E E + P + + K
Sbjct: 359 HRSNQCPQRPAVNFVEGDYEVEGDDDHNTEVVDGIEECEEDEFIGMVMRQPCDIQKKK 416
>gi|39546223|emb|CAE04472.3| OSJNBa0029L02.13 [Oryza sativa Japonica Group]
Length = 1158
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 24/192 (12%)
Query: 260 SVAEQTERRAK-GLCFNCDEQFKPGHRCKAPQLLLLDADIEDKDEQAEALEELPETLEVS 318
SV + E AK G CFNC E +C P+L + EE EV
Sbjct: 9 SVQAKKETGAKPGSCFNCGELGHFADKC--PKLRRAGPRFVQARVNHASAEEAQAAPEVV 66
Query: 319 LKALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGC---PVTTTTQFQV 375
L G P N+ T+L DS +TH F++ +G ++T +
Sbjct: 67 L----GTFPVNSF---------PATVLFDSGATHSFISKKFVGMHGLRKEELSTPMRVHT 113
Query: 376 TVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKL 435
++S S V + Q F + LL D++LG +WL ++ D +
Sbjct: 114 PGNSSTLVSFS---PSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANR 169
Query: 436 TMQFT-WKGQTV 446
T+ T KG+ V
Sbjct: 170 TVTLTNEKGEAV 181
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,863,066,601
Number of Sequences: 23463169
Number of extensions: 349082998
Number of successful extensions: 1351995
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 649
Number of HSP's that attempted gapping in prelim test: 1349521
Number of HSP's gapped (non-prelim): 2086
length of query: 485
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 338
effective length of database: 8,910,109,524
effective search space: 3011617019112
effective search space used: 3011617019112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)