BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042094
(485 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
Length = 1498
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 272 LCFNCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCF C K GHR C+A + +L D ++E KD+Q ++ LP +++ + T +
Sbjct: 266 LCFYCK---KEGHRLNECRARKAVLTDLELESKDQQTLFIKTLPIVHYIAIPEMDN-TAE 321
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK--QYGCPVTTTTQFQVTVADGGVISSS 386
T++++ V L DS S F+ + + +Y T +F+ VA ++S
Sbjct: 322 KTIKIQNT----KVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSE 377
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ +N Q L ++L +++G LR IL
Sbjct: 378 AVTIDLKIND--LQITLAAYILDNMDYQLLIGNPILRRYPKIL 418
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
Length = 1547
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 272 LCFNCDEQFKPGHR---CKAPQLLLLDADIEDKDEQAEALEELPETLEVSLKALTGATPQ 328
LCF C K GHR C+A + +L D ++E KD+Q ++ LP +++ + T +
Sbjct: 266 LCFYCK---KEGHRLNECRARKAVLTDLELESKDQQTPFIKTLPIVHYIAIPEMDN-TAE 321
Query: 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK--QYGCPVTTTTQFQVTVADGGVISSS 386
T++++ V L DS S F+ + + +Y T +F+ VA ++S
Sbjct: 322 KTIKIQNT----KVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSE 377
Query: 387 GKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAIL 429
+ +N L ++L +++G LR IL
Sbjct: 378 AVTIDLKIND--LHITLAAYILDNMDYQLLIGNPILRRYPKIL 418
>sp|O95390|GDF11_HUMAN Growth/differentiation factor 11 OS=Homo sapiens GN=GDF11 PE=2 SV=1
Length = 407
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 246 LGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA 296
LGP GL PF L V E T+R + L +CDE C+ P + +A
Sbjct: 274 LGPGAEGLHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCRYPLTVDFEA 324
>sp|Q9Z1W4|GDF11_MOUSE Growth/differentiation factor 11 OS=Mus musculus GN=Gdf11 PE=2 SV=1
Length = 405
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 246 LGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA 296
LGP GL PF L V E T+R + L +CDE C+ P + +A
Sbjct: 272 LGPGAEGLHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCRYPLTVDFEA 322
>sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3
SV=1
Length = 659
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSS----LAKQYGCPV----TTTTQ 372
+L T N++ +KG LK G +D H ++++ +A +Y P T
Sbjct: 2 SLRNRTNPNSIYVKGILKFPGYQTNLD---LHCYVDTGSSLCMASKYVIPEEYWQTAEKP 58
Query: 373 FQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDIVLG 418
+ +A+G +I + CS +P+ G +F + SG D++LG
Sbjct: 59 LNIKIANGKIIQLTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLG 104
>sp|Q6PGA0|RCOR3_MOUSE REST corepressor 3 OS=Mus musculus GN=Rcor3 PE=2 SV=2
Length = 451
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 212 RRIPPRPSMSRPSPPL----------LNSSPTITKTGGSSQPSLLG 247
R I PRP++++P PPL LN P +T GG PSL+G
Sbjct: 396 RFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIG 441
>sp|Q9P2K3|RCOR3_HUMAN REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2
Length = 495
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 212 RRIPPRPSMSRPSPPL----------LNSSPTITKTGGSSQPSLLG 247
R I PRP++++P PPL LN P ++ GG PSL+G
Sbjct: 440 RFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIG 485
>sp|Q9Z217|GDF11_RAT Growth/differentiation factor 11 (Fragment) OS=Rattus norvegicus
GN=Gdf11 PE=2 SV=1
Length = 345
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 246 LGPPPPGLPPFRRLSVAEQTERRAKGLCFNCDEQFKPGHRCKAPQLLLLDA 296
LGP G PF L V E T+R + L +CDE C+ P + +A
Sbjct: 218 LGPGAEGCHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCRYPLTVDFEA 268
>sp|Q10256|MUD1_SCHPO UBA domain-containing protein mud1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mud1 PE=1 SV=1
Length = 332
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 3/124 (2%)
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNS 396
+ H V +DS + L++ A++ G T+FQ G+ G P+
Sbjct: 117 INGHKVKAFVDSGAQATILSADCAEKCGLTRLLDTRFQGVAKGVGMAKILGCVHSAPLKI 176
Query: 397 QGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLPP 456
F ++ D++LG + LR A + D ++ G+ + G +P
Sbjct: 177 GDLYLPCRFTVIEGRDVDMLLGLDMLRRYQACI-DLENNVLRI--HGKEIPFLGESEIPK 233
Query: 457 ALAN 460
LAN
Sbjct: 234 LLAN 237
>sp|A3N011|ACKA_ACTP2 Acetate kinase OS=Actinobacillus pleuropneumoniae serotype 5b
(strain L20) GN=ackA PE=3 SV=1
Length = 402
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 338 KKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS--SSGKC 389
K+HG+ ++H+F+ S +A+ G PV T + +GG +S +GKC
Sbjct: 170 KEHGIRRYGAHGTSHLFITSQVAELAGKPVDQTNAIICHLGNGGSVSVVRNGKC 223
>sp|B0BNS1|ACKA_ACTPJ Acetate kinase OS=Actinobacillus pleuropneumoniae serotype 3
(strain JL03) GN=ackA PE=3 SV=1
Length = 402
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 338 KKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS--SSGKC 389
K+HG+ ++H+F+ S +A+ G PV T + +GG +S +GKC
Sbjct: 170 KEHGIRRYGAHGTSHLFITSQVAELAGKPVDQTNAIICHLGNGGSVSVVRNGKC 223
>sp|B3H169|ACKA_ACTP7 Acetate kinase OS=Actinobacillus pleuropneumoniae serotype 7
(strain AP76) GN=ackA PE=3 SV=1
Length = 402
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 338 KKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVIS--SSGKC 389
K+HG+ ++H+F+ S +A+ G PV T + +GG +S +GKC
Sbjct: 170 KEHGIRRYGAHGTSHLFITSQVAELAGKPVDQTNAIICHLGNGGSVSVVRNGKC 223
>sp|Q46751|CARR_PECCC Transcriptional activator protein CarR OS=Pectobacterium
carotovorum subsp. carotovorum GN=carR PE=3 SV=1
Length = 244
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 24 LSQQSNDLQELILSLHDQFIRFQEDRNNNQPLQINNQQPEPAGRIGGALVQPRHIRLDFL 83
+ NDLQ L++++H++ + +Q + N Q P AL+ PR + FL
Sbjct: 129 MKNHENDLQMLLVNVHEKVMAYQ---------RAINDQDNPPDNSRNALLSPRETEVLFL 179
Query: 84 VLSG 87
V SG
Sbjct: 180 VSSG 183
>sp|Q10255|YD27_SCHPO Uncharacterized protein C56F8.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC56F8.07 PE=4 SV=2
Length = 507
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSH-VPVN 395
+ H V +DS + L++ A++ G T+FQ VA G ++ C H P+
Sbjct: 292 INGHKVKAFVDSGAQATILSADCAEKCGLTRLLDTRFQ-GVAKGVGMAKILGCVHSAPLK 350
Query: 396 SQGFQFHLDFFLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDSLP 455
F ++ D++LG + LR A + D ++ G+ + G +P
Sbjct: 351 IGDLYLPCRFTVIEGRDVDMLLGLDMLRRYQACI-DLENNVLRI--HGKEIPFLGESEIP 407
Query: 456 PALAN 460
LAN
Sbjct: 408 KLLAN 412
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2
SV=2
Length = 529
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 321 ALTGATPQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCP----VTTTTQFQVT 376
A T A + + G + H + I S ++FL LAK+ G P VT Q T
Sbjct: 245 AYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKRPGGPPLLRVTGVDDSQST 304
Query: 377 VADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSGCDI 415
A GG +S G+ S G F +F +SGC +
Sbjct: 305 YARGGGLSLVGERLATLAQSCGVPF--EFHDAIMSGCKV 341
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,561,811
Number of Sequences: 539616
Number of extensions: 8222681
Number of successful extensions: 33291
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 32788
Number of HSP's gapped (non-prelim): 564
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)