Query 042094
Match_columns 485
No_of_seqs 283 out of 1779
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.9 8.2E-22 2.8E-26 164.5 13.3 125 328-453 22-146 (148)
2 2i1a_A DNA damage-inducible pr 99.8 3.8E-18 1.3E-22 144.3 14.1 120 328-453 24-145 (148)
3 1fmb_A EIAV protease; hydrolas 99.2 1.2E-10 4.1E-15 89.6 10.4 97 330-432 8-104 (104)
4 3slz_A GAG-Pro-POL polyprotein 99.1 1.1E-10 3.7E-15 93.6 7.5 97 327-433 19-115 (132)
5 3ec0_A Protease; HIV-2, inhibi 99.0 5.8E-09 2E-13 78.6 11.8 92 330-432 8-99 (99)
6 2hs1_A HIV-1 protease; ultra-h 98.9 9E-09 3.1E-13 77.9 9.8 92 330-432 8-99 (99)
7 2hah_A Protease, retropepsin; 98.6 1.7E-07 5.8E-12 73.2 9.5 93 330-427 14-112 (116)
8 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.5 7.3E-07 2.5E-11 76.6 12.0 93 330-433 8-100 (203)
9 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.2 1.4E-05 4.7E-10 68.7 12.4 92 330-432 112-203 (203)
10 1dsq_A Nucleic acid binding pr 98.2 3.3E-07 1.1E-11 51.1 1.4 20 271-290 3-22 (26)
11 1a6b_B Momulv, zinc finger pro 98.1 7.2E-07 2.5E-11 54.9 1.8 21 270-290 10-30 (40)
12 1nc8_A Nucleocapsid protein; H 98.1 4.7E-07 1.6E-11 52.0 0.8 21 269-289 5-25 (29)
13 3sqf_A Protease; folded monome 98.1 4.7E-06 1.6E-10 64.3 5.6 100 330-437 9-112 (114)
14 1u6p_A GAG polyprotein; MLV, A 97.9 3E-06 1E-10 56.5 1.1 21 270-290 23-43 (56)
15 2rsp_A RSV protease; hydrolase 97.8 3.3E-05 1.1E-09 60.8 5.5 85 337-428 27-120 (124)
16 2ysa_A Retinoblastoma-binding 97.4 4E-05 1.4E-09 50.8 1.0 19 271-289 8-26 (55)
17 3liy_A Protease; hydrolase, hy 97.2 0.00052 1.8E-08 52.4 5.9 90 331-427 11-111 (116)
18 2pma_A Uncharacterized protein 97.2 0.00041 1.4E-08 56.4 5.2 95 339-434 17-139 (146)
19 2a51_A Nucleocapsid protein; s 97.0 0.00021 7.1E-09 44.1 1.6 18 271-288 22-39 (39)
20 2bl6_A Nucleocapsid protein P1 97.0 0.00026 8.9E-09 43.1 1.8 16 273-288 3-18 (37)
21 2ec7_A GAG polyprotein (PR55GA 97.0 0.0002 6.7E-09 46.8 1.2 18 271-288 7-24 (49)
22 2a51_A Nucleocapsid protein; s 97.0 0.00021 7.2E-09 44.1 1.3 18 272-289 2-19 (39)
23 2bl6_A Nucleocapsid protein P1 97.0 0.0002 6.8E-09 43.6 1.1 18 271-288 20-37 (37)
24 2ec7_A GAG polyprotein (PR55GA 97.0 0.00024 8.3E-09 46.3 1.5 20 271-290 28-47 (49)
25 3nyb_B Protein AIR2; polya RNA 96.9 0.00027 9.2E-09 51.6 1.3 24 269-292 45-68 (83)
26 1cl4_A Protein (GAG polyprotei 96.8 0.00042 1.4E-08 47.5 1.9 22 269-290 29-50 (60)
27 2ihx_A Nucleocapsid (NC) prote 96.8 0.00036 1.2E-08 47.9 1.1 21 270-290 30-50 (61)
28 1a1t_A Nucleocapsid protein; s 96.7 0.00036 1.2E-08 46.9 1.0 17 272-288 35-51 (55)
29 2ihx_A Nucleocapsid (NC) prote 96.7 0.00037 1.3E-08 47.8 1.0 21 269-289 3-23 (61)
30 1a1t_A Nucleocapsid protein; s 96.7 0.00048 1.6E-08 46.2 1.2 22 268-289 10-31 (55)
31 1cl4_A Protein (GAG polyprotei 96.5 0.0004 1.4E-08 47.6 0.0 19 271-289 2-20 (60)
32 2cqf_A RNA-binding protein LIN 96.5 0.0007 2.4E-08 46.8 1.2 21 270-290 29-49 (63)
33 2cqf_A RNA-binding protein LIN 96.5 0.00095 3.3E-08 46.1 1.8 18 271-288 8-25 (63)
34 2li8_A Protein LIN-28 homolog 96.3 0.0011 3.8E-08 47.2 1.1 17 272-288 48-64 (74)
35 2li8_A Protein LIN-28 homolog 96.3 0.0012 4.1E-08 47.0 1.2 20 269-288 23-42 (74)
36 2jys_A Protease/reverse transc 95.4 0.16 5.6E-06 36.7 9.2 86 333-426 10-97 (107)
37 3ts2_A Protein LIN-28 homolog 95.1 0.0058 2E-07 50.3 1.2 17 271-287 98-114 (148)
38 2lli_A Protein AIR2; RNA surve 95.1 0.0059 2E-07 48.7 1.3 20 269-288 104-123 (124)
39 3nyb_B Protein AIR2; polya RNA 95.0 0.0054 1.8E-07 44.7 0.7 20 270-289 5-24 (83)
40 3ts2_A Protein LIN-28 homolog 94.8 0.0072 2.5E-07 49.7 1.0 17 273-289 122-138 (148)
41 2lli_A Protein AIR2; RNA surve 93.0 0.036 1.2E-06 44.1 1.8 17 272-288 24-41 (124)
42 3cms_A Chymosin B; hydrolase, 92.6 0.71 2.4E-05 43.3 10.6 101 335-441 198-321 (323)
43 1am5_A Pepsin, acid proteinase 92.6 0.23 7.8E-06 46.7 7.1 93 342-441 209-322 (324)
44 3qvc_A Histo-aspartic protease 92.5 0.28 9.5E-06 48.5 7.9 102 335-441 322-447 (451)
45 1dpj_A Proteinase A; proteinas 92.3 0.52 1.8E-05 44.3 9.2 101 335-441 201-327 (329)
46 1lya_B Cathepsin D; lysosomal 92.1 0.34 1.2E-05 43.3 7.4 94 342-441 121-239 (241)
47 1yg9_A Aspartic protease BLA G 91.9 0.35 1.2E-05 45.6 7.6 101 335-441 202-327 (330)
48 2apr_A Rhizopuspepsin; hydrola 91.9 0.46 1.6E-05 44.7 8.3 93 341-442 212-323 (325)
49 2x0b_A Renin; hydrolase-hormon 91.6 0.5 1.7E-05 45.6 8.3 94 341-441 263-381 (383)
50 1tzs_A Cathepsin E; hydrolase, 91.3 0.63 2.2E-05 44.2 8.7 101 335-442 210-341 (351)
51 4aa9_A Chymosin; hydrolase, as 91.0 0.42 1.4E-05 44.8 7.1 94 342-441 208-318 (320)
52 1izd_A Aspartic proteinase; su 90.8 0.67 2.3E-05 43.5 8.3 98 340-441 207-321 (323)
53 3k1w_A Renin; protease, altern 90.8 0.39 1.3E-05 45.4 6.7 94 342-441 221-338 (341)
54 1wkr_A Polyporopepsin; hydrola 90.5 0.43 1.5E-05 45.2 6.6 104 334-442 194-332 (340)
55 2bju_A Plasmepsin II; aspartic 90.5 1.2 4.2E-05 43.8 10.0 102 335-442 323-449 (453)
56 1miq_A Plasmepsin; aspartic pr 90.1 1.1 3.8E-05 42.9 9.3 102 335-441 247-372 (375)
57 3fv3_A SAPP1P-secreted asparti 90.1 1.4 4.8E-05 41.5 9.9 106 335-442 204-328 (339)
58 3pvk_A Candidapepsin-2; hydrol 90.0 0.57 1.9E-05 44.3 7.0 103 335-442 201-330 (342)
59 1j71_A Candidapepsin, aspartic 89.8 0.68 2.3E-05 43.6 7.4 98 335-441 202-322 (334)
60 1htr_B Gastricsin; aspartyl pr 89.1 0.44 1.5E-05 44.9 5.4 94 342-441 212-327 (329)
61 1bxo_A Protein (penicillopepsi 89.1 0.73 2.5E-05 43.2 7.0 98 340-441 206-321 (323)
62 2qzx_A Candidapepsin-5; aspart 89.0 0.46 1.6E-05 45.0 5.5 104 335-442 202-330 (342)
63 1ibq_A Aspergillopepsin; aspar 88.3 1.3 4.5E-05 41.4 8.2 96 341-441 208-323 (325)
64 3aup_A SBG7S, BG, basic 7S glo 88.2 1 3.5E-05 43.7 7.6 25 414-439 358-382 (403)
65 1mpp_A Pepsin; hydrolase(acid 87.8 1 3.5E-05 42.9 7.1 96 342-442 231-354 (361)
66 3psg_A Pepsinogen; hydrolase(a 87.3 1.1 3.8E-05 42.9 7.1 95 341-441 253-368 (370)
67 1oew_A Endothiapepsin; hydrola 86.0 2.4 8.2E-05 39.7 8.5 97 341-441 212-328 (329)
68 1t6e_X Xylanase inhibitor; two 84.9 4.2 0.00015 38.9 9.9 28 414-442 345-372 (381)
69 3lpj_A Beta-secretase 1; alzhe 84.4 0.43 1.5E-05 47.3 2.6 28 413-441 391-418 (455)
70 3c9x_A Trichoderma reesei aspa 83.9 3.8 0.00013 38.3 8.8 97 341-441 213-328 (329)
71 3vf3_A Beta-secretase 1; struc 83.0 0.5 1.7E-05 45.9 2.3 28 413-441 345-372 (402)
72 2ewy_A Beta-secretase 2; BACE2 82.6 2.2 7.5E-05 40.9 6.8 29 413-442 326-354 (383)
73 2fi2_A Zinc finger protein 42; 80.9 1.7 5.7E-05 31.9 3.8 40 165-204 50-89 (94)
74 2qp8_A Beta-secretase 1; BACE1 80.7 1.5 5.1E-05 42.4 4.7 28 413-441 338-365 (395)
75 1bxo_A Protein (penicillopepsi 80.1 3.5 0.00012 38.4 7.1 91 330-422 16-127 (323)
76 3qvc_A Histo-aspartic protease 79.6 3.3 0.00011 40.7 6.8 89 330-421 138-251 (451)
77 2bju_A Plasmepsin II; aspartic 78.8 4 0.00014 40.1 7.1 89 330-421 139-252 (453)
78 1ibq_A Aspergillopepsin; aspar 78.2 4.3 0.00015 37.9 7.0 91 329-421 14-125 (325)
79 1izd_A Aspartic proteinase; su 78.1 4.5 0.00015 37.7 7.0 91 330-422 16-127 (323)
80 3lhr_A Zinc finger protein 24; 77.8 4.5 0.00015 29.8 5.4 39 168-206 52-90 (93)
81 1lya_A Cathepsin D; lysosomal 77.2 2.4 8.1E-05 31.7 3.9 28 330-357 14-43 (97)
82 1y7q_A AW-1, zinc finger prote 77.2 2.2 7.7E-05 31.5 3.5 39 166-204 53-91 (98)
83 2x0b_A Renin; hydrolase-hormon 76.5 11 0.00037 36.1 9.4 89 330-421 62-175 (383)
84 1wkr_A Polyporopepsin; hydrola 76.2 4.7 0.00016 37.8 6.7 87 330-421 13-109 (340)
85 3vla_A EDGP; extracellular, in 74.8 2.7 9.2E-05 40.8 4.6 27 414-441 371-397 (413)
86 1oew_A Endothiapepsin; hydrola 72.8 12 0.0004 34.9 8.4 90 330-421 16-129 (329)
87 3k1w_A Renin; protease, altern 72.0 7 0.00024 36.6 6.7 89 330-421 19-132 (341)
88 3cms_A Chymosin B; hydrolase, 71.5 20 0.00069 33.1 9.8 89 330-421 15-127 (323)
89 3c9x_A Trichoderma reesei aspa 70.5 16 0.00054 34.0 8.8 90 330-421 16-130 (329)
90 4aa9_A Chymosin; hydrolase, as 70.4 20 0.00068 33.0 9.4 89 330-421 12-124 (320)
91 3pvk_A Candidapepsin-2; hydrol 70.1 17 0.00058 33.9 9.0 90 330-421 13-128 (342)
92 3psg_A Pepsinogen; hydrolase(a 69.5 12 0.00041 35.5 7.8 89 330-421 57-169 (370)
93 1yg9_A Aspartic protease BLA G 69.3 4.5 0.00015 37.9 4.7 89 330-421 18-128 (330)
94 1tzs_A Cathepsin E; hydrolase, 68.5 9 0.00031 36.1 6.7 89 330-421 24-136 (351)
95 1j71_A Candidapepsin, aspartic 68.4 15 0.0005 34.3 8.0 90 330-421 13-128 (334)
96 1miq_A Plasmepsin; aspartic pr 67.9 4.2 0.00014 38.9 4.2 89 330-421 63-176 (375)
97 2qzx_A Candidapepsin-5; aspart 66.0 20 0.0007 33.4 8.6 90 330-421 13-128 (342)
98 3fv3_A SAPP1P-secreted asparti 64.7 15 0.0005 34.3 7.3 91 330-422 13-123 (339)
99 1qdm_A Prophytepsin; aspartic 64.0 16 0.00054 36.1 7.6 28 413-441 449-476 (478)
100 1mpp_A Pepsin; hydrolase(acid 63.4 16 0.00053 34.5 7.3 90 329-421 18-137 (361)
101 1htr_B Gastricsin; aspartyl pr 62.7 45 0.0015 30.8 10.2 89 330-421 13-125 (329)
102 3efg_A Protein SLYX homolog; x 62.7 13 0.00045 26.3 4.8 43 4-46 17-59 (78)
103 1am5_A Pepsin, acid proteinase 60.0 32 0.0011 31.8 8.6 89 330-421 13-125 (324)
104 1qdm_A Prophytepsin; aspartic 56.7 30 0.001 34.1 8.1 89 330-421 53-166 (478)
105 1b5f_B Protein (cardosin A); h 55.3 29 0.00098 24.8 5.9 28 413-441 58-85 (87)
106 4e6s_A Zinc finger and SCAN do 52.8 5.2 0.00018 29.5 1.4 37 167-204 51-87 (93)
107 3vu7_H DNA repair protein REV1 48.6 24 0.00081 27.5 4.6 68 78-145 25-104 (124)
108 1b5f_A Protein (cardosin A); h 45.4 17 0.00058 32.0 3.9 89 330-421 14-127 (239)
109 2hqh_E Restin; beta/BETA struc 43.1 4.2 0.00014 21.7 -0.3 19 271-289 4-22 (26)
110 2apr_A Rhizopuspepsin; hydrola 42.1 20 0.00069 33.2 4.0 91 329-421 15-127 (325)
111 2z5i_A TM, general control pro 41.6 34 0.0012 22.0 3.8 31 3-33 14-44 (52)
112 2pnv_A Small conductance calci 38.2 23 0.0008 21.7 2.4 16 5-20 20-35 (43)
113 2oqq_A Transcription factor HY 38.2 66 0.0022 19.4 4.7 30 3-32 5-34 (42)
114 2l5g_A GPS2 protein, G protein 36.5 29 0.001 20.2 2.5 22 1-22 8-29 (38)
115 1kd8_A GABH AIV, GCN4 acid bas 36.4 63 0.0021 18.7 3.8 30 3-36 3-32 (36)
116 1dpj_A Proteinase A; proteinas 36.0 27 0.00094 32.3 3.9 89 330-421 14-126 (329)
117 2qp8_A Beta-secretase 1; BACE1 34.3 29 0.001 33.0 3.9 89 330-421 22-132 (395)
118 1gd2_E Transcription factor PA 34.3 63 0.0022 22.2 4.4 16 3-18 31-46 (70)
119 1b5f_A Protein (cardosin A); h 34.1 27 0.00093 30.6 3.4 22 342-363 211-232 (239)
120 3nr7_A DNA-binding protein H-N 33.1 84 0.0029 22.6 5.1 33 1-33 24-56 (86)
121 2ewy_A Beta-secretase 2; BACE2 31.9 34 0.0012 32.4 3.9 89 330-421 14-124 (383)
122 1kd8_B GABH BLL, GCN4 acid bas 31.8 48 0.0016 19.2 2.8 14 3-16 3-16 (36)
123 3aup_A SBG7S, BG, basic 7S glo 31.3 36 0.0012 32.6 3.9 28 329-356 21-50 (403)
124 3cve_A Homer protein homolog 1 31.2 1.2E+02 0.0041 20.9 5.4 36 5-40 18-53 (72)
125 3vf3_A Beta-secretase 1; struc 31.0 36 0.0012 32.5 3.9 89 330-421 29-139 (402)
126 2oxj_A Hybrid alpha/beta pepti 29.8 52 0.0018 18.7 2.7 14 3-16 3-16 (34)
127 3c3f_A Alpha/beta peptide with 29.7 57 0.0019 18.6 2.8 14 3-16 3-16 (34)
128 2jmo_A Parkin; IBR, E3 ligase, 29.6 11 0.00038 26.8 -0.0 17 270-287 58-74 (80)
129 3cvf_A Homer-3, homer protein 29.3 1.3E+02 0.0044 21.2 5.4 35 5-39 24-58 (79)
130 2bni_A General control protein 29.2 51 0.0017 18.8 2.6 12 3-14 3-14 (34)
131 2xdj_A Uncharacterized protein 28.2 95 0.0033 22.1 4.7 9 7-15 5-13 (83)
132 3lpj_A Beta-secretase 1; alzhe 28.1 42 0.0015 32.7 3.9 89 330-421 75-185 (455)
133 2gkw_A TNF receptor-associated 25.8 73 0.0025 26.8 4.5 34 2-35 1-34 (192)
134 2wq1_A General control protein 25.1 1E+02 0.0034 17.5 3.8 14 3-16 2-15 (33)
135 3nmd_A CGMP dependent protein 25.1 79 0.0027 21.8 3.5 6 13-18 24-29 (72)
136 1lq7_A Alpha3W; three helix bu 24.6 1E+02 0.0036 19.4 3.8 16 3-18 4-19 (67)
137 2lw1_A ABC transporter ATP-bin 24.5 1.1E+02 0.0036 22.0 4.5 42 3-44 31-78 (89)
138 1zme_C Proline utilization tra 23.3 42 0.0014 22.6 2.1 19 3-21 46-64 (70)
139 3swy_A Cyclic nucleotide-gated 23.1 1.4E+02 0.0049 18.5 4.5 29 5-33 2-30 (46)
140 4dzo_A Mitotic spindle assembl 22.7 1.2E+02 0.004 23.5 4.7 35 3-37 6-40 (123)
141 2hy6_A General control protein 22.1 89 0.003 17.8 2.7 15 2-16 2-16 (34)
142 3efg_A Protein SLYX homolog; x 21.5 1.5E+02 0.0052 20.7 4.7 39 1-39 7-45 (78)
143 2khf_A PLNJ; anti-microbial, b 21.1 85 0.0029 16.0 2.3 17 138-154 2-18 (26)
144 1t2k_D Cyclic-AMP-dependent tr 20.9 1.7E+02 0.0058 19.2 4.7 29 3-31 24-52 (61)
145 1nkp_B MAX protein, MYC proto- 20.6 74 0.0025 22.5 3.0 19 3-21 49-67 (83)
146 2r2v_A GCN4 leucine zipper; co 20.3 1.3E+02 0.0046 17.1 3.8 16 1-16 1-16 (34)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.87 E-value=8.2e-22 Score=164.51 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=101.8
Q ss_pred CCeEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEEE
Q 042094 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFL 407 (485)
Q Consensus 328 ~~~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~V 407 (485)
...+++.+.|||+++++||||||++|||+.++|+++|+.......+.....+.....+.+.+..++++|++..+.++|.|
T Consensus 22 ~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~V 101 (148)
T 3s8i_A 22 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSI 101 (148)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEEEE
Confidence 45789999999999999999999999999999999999764222222222222233446677778999999999999999
Q ss_pred cCCCCCCeeechhHHhhcCCeEEEccCcEEEEEECCeEEEEeecCC
Q 042094 408 LPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453 (485)
Q Consensus 408 ~~~~~~dvILG~dwL~~~~~i~id~~~~~~~~~~~~~~~~~~~~~~ 453 (485)
++...+|+|||||||.+++. .|||+++++.|...++.+.|-+..+
T Consensus 102 le~~~~d~LLGmD~L~~~~~-~ID~~~~~L~l~~~~~~~pfl~~~~ 146 (148)
T 3s8i_A 102 LEDQPMDMLLGLDMLRRHQC-SIDLKKNVLVIGTTGTQTYFLPEGE 146 (148)
T ss_dssp ETTCSSSEEECHHHHHHTTC-EEETTTTEEECTTTCCEEECCCGGG
T ss_pred eCCCCcCeeccHHHHHhCCE-EEEcCCCEEEEccCCeEEeecCccc
Confidence 99989999999999999997 7999999999998777787766543
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.8e-18 Score=144.27 Aligned_cols=120 Identities=14% Similarity=0.214 Sum_probs=94.2
Q ss_pred CCeEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceE--EEEccCCeeeecceEeeeEEeecceEEEEEE
Q 042094 328 QNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQ--VTVADGGVISSSGKCSHVPVNSQGFQFHLDF 405 (485)
Q Consensus 328 ~~~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~--v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~ 405 (485)
.+.+++.+.|||+++++||||||++|+|+.++|+++|+.......+. +..++|.. ..+.+..+++.+++..+.++|
T Consensus 24 ~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~--~~~~~~~~~i~ig~~~~~~~~ 101 (148)
T 2i1a_A 24 VPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK--IIGRIHQAQVKIETQYIPCSF 101 (148)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC-------------CEEEEEEEEEETTEEEEEEE
T ss_pred cceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc--cccEEEEEEEEECCEEeceeE
Confidence 45689999999999999999999999999999999999764433332 23333432 245555678999999999999
Q ss_pred EEcCCCCCCeeechhHHhhcCCeEEEccCcEEEEEECCeEEEEeecCC
Q 042094 406 FLLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWKGQTVQLTGYDS 453 (485)
Q Consensus 406 ~V~~~~~~dvILG~dwL~~~~~i~id~~~~~~~~~~~~~~~~~~~~~~ 453 (485)
.|++ .++|.|||+|||.+++. .|||.++++.|. ++.+.|.+...
T Consensus 102 ~vl~-~~~d~iLG~d~L~~~~~-~ID~~~~~l~l~--~~~~~f~~~~~ 145 (148)
T 2i1a_A 102 TVLD-TDIDVLIGLDMLKRHLA-CVDLKENVLRIA--EVETSFLSEAE 145 (148)
T ss_dssp EEEC-SSCSEEECHHHHHHTTC-EEETTTTEEEET--TEEEECCCTTT
T ss_pred EEec-CCCCeEecHHHHhhCCE-EEECCCCEEEEc--cEEEecCChhh
Confidence 9999 67899999999999997 899999999986 47777666554
No 3
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=99.19 E-value=1.2e-10 Score=89.62 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=78.0
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEEEcC
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLP 409 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~V~~ 409 (485)
...+.++|+|+.+.+||||||..|+|+...+.+++++...-.+..+.. -|..+.+. +..+.+++.|+.....++|-+
T Consensus 8 RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p~~i~G-iGG~i~v~--~~~i~i~i~g~~~~gtvlv~~ 84 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGG-VGGNVETF--STPVTIKKKGRHIKTRMLVAD 84 (104)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCEEE-TTEEECCE--EEEEEEEETTEEEEEEEEEES
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCccEEEe-CCCeEEee--EeeeEEEECCeEEEEEEEECC
Confidence 457889999999999999999999999999999999865223444444 45556655 578999999999988888866
Q ss_pred CCCCCeeechhHHhhcCCeEEEc
Q 042094 410 VSGCDIVLGAEWLRSLGAILWDF 432 (485)
Q Consensus 410 ~~~~dvILG~dwL~~~~~i~id~ 432 (485)
. ..-|||+|||.+.|. .+||
T Consensus 85 t--p~niiGRd~L~qlg~-tLnf 104 (104)
T 1fmb_A 85 I--PVTILGRDILQDLGA-KLVL 104 (104)
T ss_dssp C--SSCEECHHHHHHTTC-CCCC
T ss_pred C--CCCEecHhHHhhcCc-EEeC
Confidence 4 357899999999997 6765
No 4
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=99.13 E-value=1.1e-10 Score=93.61 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCCeEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEE
Q 042094 327 PQNTMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFF 406 (485)
Q Consensus 327 ~~~~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~ 406 (485)
......+.++|+|+.+.+||||||+.+++++..+. ....+..+.+++|... . .....+.+++++......++
T Consensus 19 ~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p------~~~~p~~I~GiGG~i~-v-r~~~~i~IeI~g~~~~~~~l 90 (132)
T 3slz_A 19 PPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP------LSDKSAWVQGATGGKR-Y-RWTTDRKVHLATGKVTHSFL 90 (132)
T ss_dssp CCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS------EEEEEEEEECSSCEEE-E-EEECCEEEEETTEEEEECCE
T ss_pred ccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC------CCCCceEEEccCCEEE-E-EEEeeeEEEECCeeecceEE
Confidence 34556788999999999999999999999875333 2224678888998754 2 33345789999988877777
Q ss_pred EcCCCCCCeeechhHHhhcCCeEEEcc
Q 042094 407 LLPVSGCDIVLGAEWLRSLGAILWDFS 433 (485)
Q Consensus 407 V~~~~~~dvILG~dwL~~~~~i~id~~ 433 (485)
|++.. ...|||+|||.+++. .+||-
T Consensus 91 V~~~t-PvnLLGrd~Ltqlg~-tL~fp 115 (132)
T 3slz_A 91 HVPDC-PYPLLGRDLLTKLKA-QIHFE 115 (132)
T ss_dssp ECTTS-SSCEECHHHHHHHTC-EEEEE
T ss_pred EECCC-CccEECHhhHhhCCc-EEECC
Confidence 75433 357899999999998 56654
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=99.00 E-value=5.8e-09 Score=78.63 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=70.6
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEEEcC
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLP 409 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~V~~ 409 (485)
...+.++|+|+.+.+|+||||.+|+|+ ..+++.... +. ...+-|..+.+.. +..+.+++.|+.....++|-|
T Consensus 8 RP~vti~I~Gq~~e~LLDTGAD~TVl~-----~~~~Pg~w~-pk-~igGiGG~i~v~q-y~~i~iei~g~~~~gtvlV~~ 79 (99)
T 3ec0_A 8 RPVVTAYIEGQPVEVLLDTGADDSIVA-----GIELGNNYS-PK-IVGGIGGFINTKE-YKNVEIEVLNKKVRATIMTGD 79 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEES-----SCCCCSCCE-EE-EEEETTEEEEEEE-EEEEEEEETTEEEEEEEEEEC
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEc-----CcccCCCCC-ce-EEEecCCcEeeeE-EeeEEEEECCeEEEEEEEeCC
Confidence 356789999999999999999999996 345553322 32 4556677777655 467999999999888888855
Q ss_pred CCCCCeeechhHHhhcCCeEEEc
Q 042094 410 VSGCDIVLGAEWLRSLGAILWDF 432 (485)
Q Consensus 410 ~~~~dvILG~dwL~~~~~i~id~ 432 (485)
.. --|||+|+|.++|. .++|
T Consensus 80 tP--vniiGRnlLtqlG~-tLnf 99 (99)
T 3ec0_A 80 TP--INIFGRNILTALGM-SLNL 99 (99)
T ss_dssp CS--SCEECHHHHHHHTC-EEEC
T ss_pred CC--cCeeehhhHhhcCc-EEeC
Confidence 33 37899999999997 7876
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.90 E-value=9e-09 Score=77.92 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=69.9
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEEEcC
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLP 409 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~V~~ 409 (485)
...+.++|+|+.+.||+||||..|+|++ .+++... .|. ...+-|..+.+.. +..+++++.|+.....++|-|
T Consensus 8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~~w-kpk-~igGiGG~i~v~q-y~qi~iei~g~~~~gtvlV~~ 79 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPGRW-KPK-MIGGIGGFIKVRQ-YDQIIIEIAGHKAIGTVLVGP 79 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSEEESC-----CSSCCCC-EEE-EEEETTEEEEEEE-EEEEEEEETTEEEEEEEEESC
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEec-----ccCCCCC-CCc-EEEeCCCcEeeeE-eccEEEEEeCCEEEEEEEeCC
Confidence 3567899999999999999999999985 3555322 233 3444566666544 468999999999999998855
Q ss_pred CCCCCeeechhHHhhcCCeEEEc
Q 042094 410 VSGCDIVLGAEWLRSLGAILWDF 432 (485)
Q Consensus 410 ~~~~dvILG~dwL~~~~~i~id~ 432 (485)
.. --|||+|||.+.|. .+||
T Consensus 80 tP--vniiGRd~Ltqlg~-tLnf 99 (99)
T 2hs1_A 80 TP--VNIIGRNLLTQIGA-TLNF 99 (99)
T ss_dssp CS--SCEECHHHHTTTTC-EEEC
T ss_pred Cc--cCchhHhHHHHcCC-EEeC
Confidence 43 35899999999997 7775
No 7
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=98.63 E-value=1.7e-07 Score=73.16 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=65.0
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceE-----EEEE
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQ-----FHLD 404 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~-----~~~~ 404 (485)
...+ ++|+|+.+.+||||||..|+|++.-+.. .+......+.+. +-|..+.+. .+..+.+++.+.. ....
T Consensus 14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~~~~--~p~~wkpk~~ig-GiGG~i~v~-qy~qv~iei~g~~~~~~~~~gt 88 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFLLDTGADITVLNRRDFQV--KNSIENGRQMIG-GIGGFIRGT-NYINVHLEIRDENYKTQCIFGN 88 (116)
T ss_dssp CEEE-EEETTEEEEEEECTTCSSCEEEGGGCCC--TTCEEEEEEEEE-ETTEEEEEE-EEEEEEEEECCTTSCCEEEEEE
T ss_pred CCEE-EEECCEEEEEEecCCCCcEEEccccccc--CCCCCCCceEEe-cCCCceeee-EEccEEEEEeCCCCCcceeEEE
Confidence 3456 9999999999999999999998643211 032222222244 445555554 4467899999887 7788
Q ss_pred EEEcC-CCCCCeeechhHHhhcCC
Q 042094 405 FFLLP-VSGCDIVLGAEWLRSLGA 427 (485)
Q Consensus 405 ~~V~~-~~~~dvILG~dwL~~~~~ 427 (485)
++|.| ...---|||+|+|.+.|.
T Consensus 89 vlV~p~tP~~vniiGRd~Ltqlg~ 112 (116)
T 2hah_A 89 VCVLEDNSTPVNILGRDNMIKFNI 112 (116)
T ss_dssp EEEETTCCCSSEEECHHHHTTTTC
T ss_pred EEECCCCCccccEecHHHHhHcCC
Confidence 88988 332237899999999996
No 8
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.55 E-value=7.3e-07 Score=76.59 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=71.8
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEEEcC
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLP 409 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~V~~ 409 (485)
...++++|+|+.+.+||||||.+|+|. .++++.. -.|..+ .+-|..+.+.. +..+++++.|+.....++|-+
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~-----~~~lpg~-w~pk~i-gGIGG~i~vrq-y~~i~iei~g~~~~gtvlVg~ 79 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGX-WKPKLI-GGIAGFIKVRQ-YDQIPVEIXGHKAIGTVLVGP 79 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCSSC-EEEEEE-EETTEEEEEEE-EEEEEEEETTEEEEEEEEESC
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEe-----cccCCCC-CCceEE-EEccCcEEEEE-EcceeEEEcCeEEEEEEeeCC
Confidence 457789999999999999999999998 3666642 123334 44566666544 457899999999888888865
Q ss_pred CCCCCeeechhHHhhcCCeEEEcc
Q 042094 410 VSGCDIVLGAEWLRSLGAILWDFS 433 (485)
Q Consensus 410 ~~~~dvILG~dwL~~~~~i~id~~ 433 (485)
. ..-|||+|.|.++|. .+||.
T Consensus 80 t--PvnIiGRd~LtqlG~-tLnf~ 100 (203)
T 3ka2_A 80 T--PVNIIGRNLLTQIGX-TLNFX 100 (203)
T ss_dssp C--SSCEECHHHHTTTTC-EEEGG
T ss_pred C--CcCccchhhhhhcCc-eEEec
Confidence 3 456899999999997 89987
No 9
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.24 E-value=1.4e-05 Score=68.67 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=70.0
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEEEcC
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLP 409 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~V~~ 409 (485)
...+.++|+|+.+.+|+||||.+|+|. ..+++... +|..+ .+-|..+.+... ..+++++.|+.....++|-|
T Consensus 112 rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lpg~w-~pk~i-gGiGg~i~v~qy-~~i~iei~g~~~~~tvlVgp 183 (203)
T 3ka2_A 112 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGXW-KPKLI-GGIGGFIKVRQY-DQIPVEIXGHKAIGTVLVGP 183 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCCSCC-EEEEE-EETTEEEEEEEE-EEEEEEETTEEEEEEEEESC
T ss_pred CCcEEEEECCEEEeeeecccCCceeee-----cccCCCCC-CceEE-eeccceEEEEEe-ccEEEEECCeEEEEEEEECC
Confidence 456889999999999999999999995 45555322 23333 445666665443 67899999998888888877
Q ss_pred CCCCCeeechhHHhhcCCeEEEc
Q 042094 410 VSGCDIVLGAEWLRSLGAILWDF 432 (485)
Q Consensus 410 ~~~~dvILG~dwL~~~~~i~id~ 432 (485)
. .--|+|+|.|.++|. .++|
T Consensus 184 t--PvniiGRn~LtqlG~-tl~f 203 (203)
T 3ka2_A 184 T--PVNIIGRNLLTQIGX-TLNF 203 (203)
T ss_dssp C--SSCEECHHHHGGGTC-EEEC
T ss_pred C--CcCeechhhHHHhCC-eeeC
Confidence 5 356789999999997 7775
No 10
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.22 E-value=3.3e-07 Score=51.09 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=17.3
Q ss_pred CceeecCCCCCCCCcCCCce
Q 042094 271 GLCFNCDEQFKPGHRCKAPQ 290 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~~~ 290 (485)
..||+||+.||++++|+.++
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 57999999999999997654
No 11
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.14 E-value=7.2e-07 Score=54.90 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.5
Q ss_pred CCceeecCCCCCCCCcCCCce
Q 042094 270 KGLCFNCDEQFKPGHRCKAPQ 290 (485)
Q Consensus 270 ~~~Cf~Cg~~GH~a~~C~~~~ 290 (485)
...||+||+.||++++||.+.
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSC
T ss_pred CCeeeECCCCCcchhhCcCCc
Confidence 467999999999999998764
No 12
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.14 E-value=4.7e-07 Score=52.01 Aligned_cols=21 Identities=29% Similarity=0.749 Sum_probs=18.0
Q ss_pred hCCceeecCCCCCCCCcCCCc
Q 042094 269 AKGLCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 269 ~~~~Cf~Cg~~GH~a~~C~~~ 289 (485)
+...||+||+.||++++|+.+
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSS
T ss_pred CCCEEEECCccccCHhHCccc
Confidence 346799999999999999654
No 13
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=98.08 E-value=4.7e-06 Score=64.27 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=59.1
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHhhcCCcccccc--ceEEEEccCCeeeecceEeeeEEe--ecceEEEEEE
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTT--QFQVTVADGGVISSSGKCSHVPVN--SQGFQFHLDF 405 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~--~~~v~~a~G~~~~~~~~~~~v~v~--i~~~~~~~~~ 405 (485)
...+.++|+|+.+.+||||||..++|.. .+++..-.. ..+...+=|..+.+... ..+... +.|+......
T Consensus 9 RP~vti~I~Gq~~eaLLDTGADdTVi~~-----~~lpg~W~p~~~~k~igGIGG~i~v~qy-~~~~~~~~i~g~k~i~tv 82 (114)
T 3sqf_A 9 KPSLTLWLDDKMFTGLINTGADVTIIKL-----EDWPPNWPITDTLTNLRGIGQSNNPKQS-SKYLTWRDKENNSGLIKP 82 (114)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEG-----GGSCTTSCEEECCCCCTTCCGGGCCEEE-SSCEEEECTTCCEEEECC
T ss_pred CCeEEEEECCEEEEEEEccCCCceEEec-----ccCCCCcccCcCceEEEeccceEEEEEe-ccceEEEecCCCEEEEEE
Confidence 3467799999999999999999999974 345432111 11222333445554432 333333 6788777777
Q ss_pred EEcCCCCCCeeechhHHhhcCCeEEEccCcEE
Q 042094 406 FLLPVSGCDIVLGAEWLRSLGAILWDFSKLTM 437 (485)
Q Consensus 406 ~V~~~~~~dvILG~dwL~~~~~i~id~~~~~~ 437 (485)
+|.+... --|+|+|.|.++|. .++|-+..+
T Consensus 83 lV~~ptP-vNIiGRn~LtqlG~-tLnfp~~~~ 112 (114)
T 3sqf_A 83 FVIPNLP-VNLWGRDLLSQMKI-MMASPNDIV 112 (114)
T ss_dssp EEETTCS-SCEECHHHHTTSCC----------
T ss_pred EECCCCc-ccEEchhhHhhcCc-EEECCCccc
Confidence 8873222 45689999999997 677765443
No 14
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.88 E-value=3e-06 Score=56.49 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.4
Q ss_pred CCceeecCCCCCCCCcCCCce
Q 042094 270 KGLCFNCDEQFKPGHRCKAPQ 290 (485)
Q Consensus 270 ~~~Cf~Cg~~GH~a~~C~~~~ 290 (485)
...||+||+.||++++||.+.
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCC
T ss_pred CCcceeCCCCCcccccCcCCc
Confidence 467999999999999998764
No 15
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=97.77 E-value=3.3e-05 Score=60.82 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=52.8
Q ss_pred ECCeEEEEEEcCCCCccccCHHHHhhcCCccccc----cceEEEEccCCeeeecceEe-eeEEeecce--EEEEEEEEcC
Q 042094 337 LKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTT----TQFQVTVADGGVISSSGKCS-HVPVNSQGF--QFHLDFFLLP 409 (485)
Q Consensus 337 i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~----~~~~v~~a~G~~~~~~~~~~-~v~v~i~~~--~~~~~~~V~~ 409 (485)
|+|+.+.+||||||..++|.+ ..++.... ....+...+|- +.+.. +. .+.+++.|. .....++|.|
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~-----~~lP~~W~k~~~~~~~igGIGG~-i~v~q-y~~~i~iei~g~~g~~~~tvlV~P 99 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISE-----EDWPTDWPVMEAANPQIHGIGGG-IPMRK-SRDMIELGVINRDGSLERPLLLFP 99 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEET-----TTSCTTSCEEECC---------C-CCEEE-ESSCEEEEEECTTSCBCCCEEECC
T ss_pred CCCEEEEEEecCCCCcEEEec-----ccCCCcceeeccccceeeecCce-EeeEE-eCCceEEEEeCCCCcEEEEEEECc
Confidence 899999999999999999984 34443211 11125555553 44333 33 677878776 5556677777
Q ss_pred CC--CCCeeechhHHhhcCCe
Q 042094 410 VS--GCDIVLGAEWLRSLGAI 428 (485)
Q Consensus 410 ~~--~~dvILG~dwL~~~~~i 428 (485)
.. .---|+|+|.|.++|..
T Consensus 100 ~~~~tPvnIiGRdlLtqlG~t 120 (124)
T 2rsp_A 100 AVAMVRGSILGRDCLQGLGLR 120 (124)
T ss_dssp EEESCSSEEECHHHHHHTTCE
T ss_pred CCCCCceeEECHhHHhhCCcE
Confidence 31 12468999999999973
No 16
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.38 E-value=4e-05 Score=50.83 Aligned_cols=19 Identities=21% Similarity=0.446 Sum_probs=16.8
Q ss_pred CceeecCCCCCCCCcCCCc
Q 042094 271 GLCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~~ 289 (485)
..||+||++||++++||..
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGG
T ss_pred CccccCCCcCcccccCCCC
Confidence 5699999999999999743
No 17
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=97.25 E-value=0.00052 Score=52.40 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=56.8
Q ss_pred EEEEEEEC-----CeEEEEEEcCCCCccccCHHHHhhcCCcccc--ccceEEEEccCCeeeecceEeeeEEeecc----e
Q 042094 331 MRLKGNLK-----KHGVTILIDSSSTHIFLNSSLAKQYGCPVTT--TTQFQVTVADGGVISSSGKCSHVPVNSQG----F 399 (485)
Q Consensus 331 ~~~~~~i~-----~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~--~~~~~v~~a~G~~~~~~~~~~~v~v~i~~----~ 399 (485)
..+.++|+ |+.+.||+||||..++|.+ .+++... ... ++..+.|..+.. .....+++.+-. .
T Consensus 11 PlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~t-kiiGGiGg~~~~-~qs~~~pv~i~lpfr~~ 83 (116)
T 3liy_A 11 PVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNT-SVLGAGGQTQDH-FKLTSLPVLIRLPFRTT 83 (116)
T ss_dssp CEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEEC-CEEETTEEESSS-EEEESSCEEEECTTCCS
T ss_pred CeEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCccccc-ceEeecccceee-eEecCCCeEEEeccCCc
Confidence 46788888 9999999999999999974 4554321 112 455555555443 233456665554 2
Q ss_pred EEEEEEEEcCCCCCCeeechhHHhhcCC
Q 042094 400 QFHLDFFLLPVSGCDIVLGAEWLRSLGA 427 (485)
Q Consensus 400 ~~~~~~~V~~~~~~dvILG~dwL~~~~~ 427 (485)
...+....++..+.=.|||+|-|.+.+.
T Consensus 84 pv~l~~~lv~~~~~w~iigRd~l~q~q~ 111 (116)
T 3liy_A 84 PIVLTSCLVDTKNNWAIIGRDALQQCQG 111 (116)
T ss_dssp CEEESSCEEETTSCCCEECHHHHHHTTC
T ss_pred ceeeceEEEcCCCceeEechhHHhhhcc
Confidence 2333333334443456889999999986
No 18
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=97.20 E-value=0.00041 Score=56.40 Aligned_cols=95 Identities=8% Similarity=0.054 Sum_probs=59.3
Q ss_pred CeEEEEEEcCCCCccccCHHHHhhcC----------Cc-------cc-c-ccceEEEEccCCe------e-eecceEeee
Q 042094 339 KHGVTILIDSSSTHIFLNSSLAKQYG----------CP-------VT-T-TTQFQVTVADGGV------I-SSSGKCSHV 392 (485)
Q Consensus 339 ~~~v~aLiDsGSt~sfIs~~~~~~l~----------l~-------~~-~-~~~~~v~~a~G~~------~-~~~~~~~~v 392 (485)
|..+.|=|||||..|-|+..-++... +. .+ + .....|...+|.. . .-...+...
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R~VV~~ 96 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLL 96 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEEEEE
T ss_pred CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccccEEEE
Confidence 55688999999999988765443211 10 00 0 0122334444541 0 112345567
Q ss_pred EEeecceEEEEEEEEcCC--CCCCeeechhHHhhcCCeEEEccC
Q 042094 393 PVNSQGFQFHLDFFLLPV--SGCDIVLGAEWLRSLGAILWDFSK 434 (485)
Q Consensus 393 ~v~i~~~~~~~~~~V~~~--~~~dvILG~dwL~~~~~i~id~~~ 434 (485)
.+.+|+....++|.+.+- ..|+++||++||...+. .+|-..
T Consensus 97 ~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~-lVD~s~ 139 (146)
T 2pma_A 97 NIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNG-AVDPAL 139 (146)
T ss_dssp EEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTE-EEETTC
T ss_pred EEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCE-EECCch
Confidence 899999999999999984 56999999999988776 577553
No 19
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.04 E-value=0.00021 Score=44.13 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=15.3
Q ss_pred CceeecCCCCCCCCcCCC
Q 042094 271 GLCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~ 288 (485)
..||+||+.||++++||+
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 569999999999999963
No 20
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.00 E-value=0.00026 Score=43.10 Aligned_cols=16 Identities=31% Similarity=0.924 Sum_probs=9.4
Q ss_pred eeecCCCCCCCCcCCC
Q 042094 273 CFNCDEQFKPGHRCKA 288 (485)
Q Consensus 273 Cf~Cg~~GH~a~~C~~ 288 (485)
||+|++.||++++|+.
T Consensus 3 C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRA 18 (37)
T ss_dssp BSSSCCSSCCTTTSSC
T ss_pred ccccCCCCcchhhCcC
Confidence 5666666666666643
No 21
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.99 E-value=0.0002 Score=46.79 Aligned_cols=18 Identities=28% Similarity=0.772 Sum_probs=11.1
Q ss_pred CceeecCCCCCCCCcCCC
Q 042094 271 GLCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~ 288 (485)
..||+||+.||++++|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 446666666666666654
No 22
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.99 E-value=0.00021 Score=44.12 Aligned_cols=18 Identities=33% Similarity=0.927 Sum_probs=16.4
Q ss_pred ceeecCCCCCCCCcCCCc
Q 042094 272 LCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 272 ~Cf~Cg~~GH~a~~C~~~ 289 (485)
.||+|++.||++++|+.+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999764
No 23
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=96.97 E-value=0.0002 Score=43.63 Aligned_cols=18 Identities=22% Similarity=0.794 Sum_probs=16.4
Q ss_pred CceeecCCCCCCCCcCCC
Q 042094 271 GLCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~ 288 (485)
..||+|++.||++++||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 579999999999999974
No 24
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.97 E-value=0.00024 Score=46.33 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=18.0
Q ss_pred CceeecCCCCCCCCcCCCce
Q 042094 271 GLCFNCDEQFKPGHRCKAPQ 290 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~~~ 290 (485)
..||+||+.||++++||.++
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSSC
T ss_pred CeeCcCCCcCCccCCCcCCC
Confidence 57999999999999998764
No 25
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00027 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.2
Q ss_pred hCCceeecCCCCCCCCcCCCceee
Q 042094 269 AKGLCFNCDEQFKPGHRCKAPQLL 292 (485)
Q Consensus 269 ~~~~Cf~Cg~~GH~a~~C~~~~~~ 292 (485)
....||+||+.||++++|+..+..
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~~r~s 68 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKEKRSS 68 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSSCCSC
T ss_pred CCCeecccCCCCcCcccCCccccC
Confidence 347799999999999999877643
No 26
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.83 E-value=0.00042 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.7
Q ss_pred hCCceeecCCCCCCCCcCCCce
Q 042094 269 AKGLCFNCDEQFKPGHRCKAPQ 290 (485)
Q Consensus 269 ~~~~Cf~Cg~~GH~a~~C~~~~ 290 (485)
....||+|++.||++++|+.+.
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCcceeECCCCCCccCcCCCcc
Confidence 3478999999999999997653
No 27
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.76 E-value=0.00036 Score=47.92 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=17.6
Q ss_pred CCceeecCCCCCCCCcCCCce
Q 042094 270 KGLCFNCDEQFKPGHRCKAPQ 290 (485)
Q Consensus 270 ~~~Cf~Cg~~GH~a~~C~~~~ 290 (485)
...||+|++.||++++|+.++
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 367999999999999997765
No 28
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.74 E-value=0.00036 Score=46.88 Aligned_cols=17 Identities=18% Similarity=0.581 Sum_probs=8.6
Q ss_pred ceeecCCCCCCCCcCCC
Q 042094 272 LCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 272 ~Cf~Cg~~GH~a~~C~~ 288 (485)
.||+||+.||++++||.
T Consensus 35 ~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 35 GCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred EeCCCCCcCCccCCCcC
Confidence 45555555555555543
No 29
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.73 E-value=0.00037 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=18.0
Q ss_pred hCCceeecCCCCCCCCcCCCc
Q 042094 269 AKGLCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 269 ~~~~Cf~Cg~~GH~a~~C~~~ 289 (485)
....||+|++.||++++|+..
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTT
T ss_pred CCCcccccCCCCeehhhCcCC
Confidence 346799999999999999764
No 30
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.68 E-value=0.00048 Score=46.24 Aligned_cols=22 Identities=36% Similarity=0.821 Sum_probs=18.7
Q ss_pred hhCCceeecCCCCCCCCcCCCc
Q 042094 268 RAKGLCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 268 ~~~~~Cf~Cg~~GH~a~~C~~~ 289 (485)
++...||+|++.||++++|+..
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCcceeeeCCCCcChhhcCCC
Confidence 3456799999999999999764
No 31
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.53 E-value=0.0004 Score=47.62 Aligned_cols=19 Identities=26% Similarity=0.739 Sum_probs=0.0
Q ss_pred CceeecCCCCCCCCcCCCc
Q 042094 271 GLCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~~ 289 (485)
+.||+|++.||++++|+..
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 3599999999999999764
No 32
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.52 E-value=0.0007 Score=46.77 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=16.1
Q ss_pred CCceeecCCCCCCCCcCCCce
Q 042094 270 KGLCFNCDEQFKPGHRCKAPQ 290 (485)
Q Consensus 270 ~~~Cf~Cg~~GH~a~~C~~~~ 290 (485)
...||+|++.||++++||.+.
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCccCCcCCcCCccCcCCCcc
Confidence 356888888888888887543
No 33
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.50 E-value=0.00095 Score=46.08 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=16.5
Q ss_pred CceeecCCCCCCCCcCCC
Q 042094 271 GLCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~ 288 (485)
..||+|++.||++++|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 569999999999999975
No 34
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=96.28 E-value=0.0011 Score=47.24 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=8.3
Q ss_pred ceeecCCCCCCCCcCCC
Q 042094 272 LCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 272 ~Cf~Cg~~GH~a~~C~~ 288 (485)
.||+|++.||++++|+.
T Consensus 48 ~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 48 KCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCTTTCCTTSCGGGCTT
T ss_pred ccCCcCCcCCccCcCcC
Confidence 35555555555555543
No 35
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=96.25 E-value=0.0012 Score=47.04 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=17.4
Q ss_pred hCCceeecCCCCCCCCcCCC
Q 042094 269 AKGLCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 269 ~~~~Cf~Cg~~GH~a~~C~~ 288 (485)
....||+||+.||++++|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 34679999999999999974
No 36
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=95.40 E-value=0.16 Score=36.74 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=61.2
Q ss_pred EEEEECCeEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecceEeeeEEeecceEEEEEEEEcCCCC
Q 042094 333 LKGNLKKHGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFHLDFFLLPVSG 412 (485)
Q Consensus 333 ~~~~i~~~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~~~~~V~~~~~ 412 (485)
+.+.|.|..+++.-||||+++.|-..+... ..+.....+.+.+|..-. .+--+.|.++|.....+++--+..
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~----E~PI~~~~I~TIHG~k~q---~vYYl~fKv~GRKveaEVi~sp~d- 81 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLED----ERPIQTMLIKTIHGEKQQ---DVYYLTFKVQGRKVEAEVLASPYD- 81 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTT----CCCSEEEEEECSSCEEEE---EEEEEEEEESSCEEEEEEEEESSS-
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcc----cccccceEEEEecCceec---eEEEEEEEEcCeEEEEEEecCccc-
Confidence 678899999999999999999999887653 134456678888987643 223478999999777666655532
Q ss_pred CCee--echhHHhhcC
Q 042094 413 CDIV--LGAEWLRSLG 426 (485)
Q Consensus 413 ~dvI--LG~dwL~~~~ 426 (485)
|-+| --.+|+.+.+
T Consensus 82 Yvli~P~DiPW~~~~p 97 (107)
T 2jys_A 82 YILLNPSDVPWLMKKP 97 (107)
T ss_dssp SEEECTTTCHHHHSCC
T ss_pred EEEEcCcCccccccCc
Confidence 2122 1468988654
No 37
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=95.13 E-value=0.0058 Score=50.26 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=10.3
Q ss_pred CceeecCCCCCCCCcCC
Q 042094 271 GLCFNCDEQFKPGHRCK 287 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~ 287 (485)
..||+||+.||++++|+
T Consensus 98 ~~C~~Cg~~GH~a~~C~ 114 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECK 114 (148)
T ss_dssp CCCTTTCCSSCCGGGCC
T ss_pred CcccEeCCccchhhhCC
Confidence 34666666666666664
No 38
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.0059 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=17.8
Q ss_pred hCCceeecCCCCCCCCcCCC
Q 042094 269 AKGLCFNCDEQFKPGHRCKA 288 (485)
Q Consensus 269 ~~~~Cf~Cg~~GH~a~~C~~ 288 (485)
....||+|++.||++++||.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 35789999999999999985
No 39
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.0054 Score=44.68 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.2
Q ss_pred CCceeecCCCCCCCCcCCCc
Q 042094 270 KGLCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 270 ~~~Cf~Cg~~GH~a~~C~~~ 289 (485)
...||+|++.||++++||..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 46799999999999999754
No 40
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=94.83 E-value=0.0072 Score=49.67 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=16.0
Q ss_pred eeecCCCCCCCCcCCCc
Q 042094 273 CFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 273 Cf~Cg~~GH~a~~C~~~ 289 (485)
||+|++.||++++||.+
T Consensus 122 C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 122 CHFCQSINHMVASCPLK 138 (148)
T ss_dssp CTTTCCSSCCGGGCTTT
T ss_pred ccccCCcCCEeccCcCC
Confidence 99999999999999865
No 41
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=92.96 E-value=0.036 Score=44.11 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=9.1
Q ss_pred ceeecCCC-CCCCCcCCC
Q 042094 272 LCFNCDEQ-FKPGHRCKA 288 (485)
Q Consensus 272 ~Cf~Cg~~-GH~a~~C~~ 288 (485)
.||+||+. ||++++||.
T Consensus 24 ~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 24 ICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp CCTTTCCTTTCCTTTGGG
T ss_pred cCcCCCCcCCccCcccCC
Confidence 45555555 555555543
No 42
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=92.58 E-value=0.71 Score=43.29 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=61.8
Q ss_pred EEECCeE------EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeec--ceEeeeEEeecceEEEEE-
Q 042094 335 GNLKKHG------VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSS--GKCSHVPVNSQGFQFHLD- 404 (485)
Q Consensus 335 ~~i~~~~------v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~--~~~~~v~v~i~~~~~~~~- 404 (485)
+.|++.. ..++||||++..++..++++.+.-..... ...+|.. +.|. .....+.|.++|..+.+.
T Consensus 198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 272 (323)
T 3cms_A 198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT-----QNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTP 272 (323)
T ss_dssp EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCE-----EETTTEEEECTTCTTTSCCEEEEETTEEEEECH
T ss_pred EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCe-----ecCCCcEEEECCCCccCceEEEEECCEEEEECH
Confidence 4556654 47999999999999998887663221110 0011211 1221 112356677777665432
Q ss_pred ----------EE--EcCC-CCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 ----------FF--LLPV-SGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 ----------~~--V~~~-~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+. .+...|||..||+.+-. ..|+.+++|-|..
T Consensus 273 ~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~ 321 (323)
T 3cms_A 273 SAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYS-VFDRANNLVGLAK 321 (323)
T ss_dssp HHHEEEETTEEEESEEEC---CCEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred HHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceEE-EEECCCCEEEEEE
Confidence 22 2222 23468999999999986 7999999998864
No 43
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=92.56 E-value=0.23 Score=46.74 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=58.6
Q ss_pred EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eEeeeEEeecceEEEEE-----------EE-
Q 042094 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KCSHVPVNSQGFQFHLD-----------FF- 406 (485)
Q Consensus 342 v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~v~v~i~~~~~~~~-----------~~- 406 (485)
..++||||++..++..++++.+.-..... ..+|.. +.|.. ....+.|.++|..+.+. ++
T Consensus 209 ~~aiiDSGTt~~~lp~~~~~~l~~~~~~~------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~C~~ 282 (324)
T 1am5_A 209 CQAIVDTGTSKIVAPVSALANIMKDIGAS------ENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGDQAFCTS 282 (324)
T ss_dssp EEEEECTTCSSEEECTTTHHHHHHHHTCE------ECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEESSSCEEE
T ss_pred ceEEEecCCccEECCHHHHHHHHHHhCCc------ccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCCCeEEE
Confidence 67999999999999988877653221110 122321 12211 12356677777665431 22
Q ss_pred -EcCC-----CCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 407 -LLPV-----SGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 407 -V~~~-----~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
+.+. .+...|||..||+.+-. ..|+.+++|.|..
T Consensus 283 ~~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~~~~~igfa~ 322 (324)
T 1am5_A 283 GLGSSGVPSNTSELWIFGDVFLRNYYT-IYDRTNNKVGFAP 322 (324)
T ss_dssp CEEECCSCCSSSCEEEECHHHHHHEEE-EEETTTTEEEEEE
T ss_pred EEEECccCCCCCCcEEEChHHhccEEE-EEECCCCEEEEEE
Confidence 2222 13468999999999986 7999999998864
No 44
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=92.53 E-value=0.28 Score=48.47 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=64.2
Q ss_pred EEECCe---EEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeec-ceEeeeEEeecceEEEEEE----
Q 042094 335 GNLKKH---GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSS-GKCSHVPVNSQGFQFHLDF---- 405 (485)
Q Consensus 335 ~~i~~~---~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~-~~~~~v~v~i~~~~~~~~~---- 405 (485)
+.|++. ...++||||++..++..++++.+.-..... .....|.. +.|. .....+.+.++|..+.+..
T Consensus 322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~----~~~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi 397 (451)
T 3qvc_A 322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVF----KVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYL 397 (451)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTTTCE----ECTTSSCEEEETTCTTCCCEEEEETTEEEEECHHHHE
T ss_pred EEECCccCCCceEEEeCCCccccCCHHHHHHHHHHcCCe----ecCCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHhe
Confidence 556663 567999999999999999988774332110 00011221 2222 1224567777777655421
Q ss_pred -----------E--EcCCC--CCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 406 -----------F--LLPVS--GCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 406 -----------~--V~~~~--~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
+ +.+.. ....|||..||+.+-. ..|+.+++|.|-.
T Consensus 398 ~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~Yv-VfD~~n~rIGfA~ 447 (451)
T 3qvc_A 398 EPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFT-VYDYDNHTVGFAL 447 (451)
T ss_dssp EECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEE-EEETTTTEEEEEE
T ss_pred eecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEE-EEECCCCEEEEEE
Confidence 1 11222 2458999999999996 7999999998864
No 45
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=92.28 E-value=0.52 Score=44.34 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=60.0
Q ss_pred EEECCeE-----EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCee-eecc--eEeeeEEeecceEEEEE--
Q 042094 335 GNLKKHG-----VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVI-SSSG--KCSHVPVNSQGFQFHLD-- 404 (485)
Q Consensus 335 ~~i~~~~-----v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~-~~~~--~~~~v~v~i~~~~~~~~-- 404 (485)
+.|++.. ..++||||++..++..++++.+.-..... ...+|... .|.. ....+.|.++|..+.+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~ 275 (329)
T 1dpj_A 201 IGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAK-----KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPY 275 (329)
T ss_dssp EEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCE-----ECTTSSEEECGGGGGGCCCEEEEETTEEEEECTT
T ss_pred EEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCc-----cCCCCeEEEECCCCCcCCcEEEEECCEEEEECHH
Confidence 4555544 36999999999999999888663221100 01122111 1211 11345566665544321
Q ss_pred ---------EE--EcCC-----CCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 ---------FF--LLPV-----SGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 ---------~~--V~~~-----~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+. .+...|||..||+.+-. ..|+.+++|-|..
T Consensus 276 ~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~ 327 (329)
T 1dpj_A 276 DYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYS-IYDLGNNAVGLAK 327 (329)
T ss_dssp TSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred HhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceEE-EEECCCCEEEEEE
Confidence 22 2222 23468999999999986 7999999998864
No 46
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=92.12 E-value=0.34 Score=43.28 Aligned_cols=94 Identities=12% Similarity=0.199 Sum_probs=56.8
Q ss_pred EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eEeeeEEeecceEEEE---------------
Q 042094 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KCSHVPVNSQGFQFHL--------------- 403 (485)
Q Consensus 342 v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~v~v~i~~~~~~~--------------- 403 (485)
..++||||++..++..++++.+.-..... . ..+|.. +.|.. ....+.+.++|..+.+
T Consensus 121 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~-~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~ 195 (241)
T 1lya_B 121 CEAIVDTGTSLMVGPVDEVRELQKAIGAV----P-LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKT 195 (241)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCE----E-EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSS
T ss_pred CEEEEECCCccccCCHHHHHHHHHHhCCe----e-ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCC
Confidence 57999999999999999888663221100 0 012211 12211 1234556666654432
Q ss_pred EEE--EcCC-----CCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 404 DFF--LLPV-----SGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 404 ~~~--V~~~-----~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
.++ +.+. .....|||..||+.+-. ..|+.+++|-|..
T Consensus 196 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~~~~~igfA~ 239 (241)
T 1lya_B 196 LCLSGFMGMDIPPPSGPLWILGDVFIGRYYT-VFDRDNNRVGFAE 239 (241)
T ss_dssp EEEESEEECCCCTTTCCCEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred eeEEEEEecccCCCCCCeEEechHHhcceEE-EEECCCCEEEEEE
Confidence 122 2221 23468999999999986 7999999998864
No 47
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=91.92 E-value=0.35 Score=45.58 Aligned_cols=101 Identities=13% Similarity=0.187 Sum_probs=64.3
Q ss_pred EEECCeE-----EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccC--C--eeeecc--eEeeeEEeecceEEEE
Q 042094 335 GNLKKHG-----VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG--G--VISSSG--KCSHVPVNSQGFQFHL 403 (485)
Q Consensus 335 ~~i~~~~-----v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G--~--~~~~~~--~~~~v~v~i~~~~~~~ 403 (485)
+.|++.. ..++||||++..++..++++.+.-..... . ..+| . .+.|.. ....+.|.++|..+.+
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~--~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l 276 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCV---V--EKTTTRRICKLDCSKIPSLPDVTFVINGRNFNI 276 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCE---E--EECSSCEEEEECGGGGGGSCCEEEEETTEEEEE
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCc---c--cCCCceEEEEEECCCccccCcEEEEECCEEEEE
Confidence 4455544 47999999999999999888763322110 0 1233 1 223321 2345777888876654
Q ss_pred E-----------EE--EcCC-CCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 404 D-----------FF--LLPV-SGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 404 ~-----------~~--V~~~-~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
. ++ +.+. .+...|||..||+.+-. ..|+.+++|-|..
T Consensus 277 ~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~-vfD~~~~riGfA~ 327 (330)
T 1yg9_A 277 SSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYS-EFNWENKTMGFGR 327 (330)
T ss_dssp CHHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CHHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEE-EEECCCCEEEEEE
Confidence 2 22 1221 23468999999999986 7999999998875
No 48
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=91.90 E-value=0.46 Score=44.66 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCccccCHH----HHhhcCCccccccceEEEEccCCeeeecce-EeeeEEeecceEEEE------------
Q 042094 341 GVTILIDSSSTHIFLNSS----LAKQYGCPVTTTTQFQVTVADGGVISSSGK-CSHVPVNSQGFQFHL------------ 403 (485)
Q Consensus 341 ~v~aLiDsGSt~sfIs~~----~~~~l~l~~~~~~~~~v~~a~G~~~~~~~~-~~~v~v~i~~~~~~~------------ 403 (485)
...++||||++..++..+ +++.+.-......... +.|... ...+.|.++|..+.+
T Consensus 212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~--------~~C~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~~ 283 (325)
T 2apr_A 212 SFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYT--------ISCDTSAFKPLVFSINGASFQVSPDSLVFEEFQG 283 (325)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEE--------ECSCGGGCCCEEEEETTEEEEECGGGGEEEEETT
T ss_pred CceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEE--------EECCCCCCCcEEEEECCEEEEECHHHEEEcCCCC
Confidence 357999999999999999 6666653321100111 111111 123444444332221
Q ss_pred EEE--EcCCCCCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 404 DFF--LLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 404 ~~~--V~~~~~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
.++ +.+...-..|||..||+.+-. ..|+.+++|-|...
T Consensus 284 ~C~~~i~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~~ 323 (325)
T 2apr_A 284 QCIAGFGYGNWGFAIIGDTFLKNNYV-VFNQGVPEVQIAPV 323 (325)
T ss_dssp EEEESEEEESSSSEEECHHHHTTEEE-EEETTTTEEEEEEB
T ss_pred eEEEEEEcCCCCCEEECHHHhcceEE-EEECCCCEEEEEec
Confidence 111 111113458999999999986 79999999998753
No 49
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=91.55 E-value=0.5 Score=45.55 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eEeeeEEeecceEEEEE-------------
Q 042094 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KCSHVPVNSQGFQFHLD------------- 404 (485)
Q Consensus 341 ~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~v~v~i~~~~~~~~------------- 404 (485)
...|+||||++..++..++++.+.-..... . .+|.. +.|.. ....+.|.++|..+.+.
T Consensus 263 ~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----~--~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~ 336 (383)
T 2x0b_A 263 GCLALVDTGASYISGSTSSIEKLMEALGAK----K--RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSK 336 (383)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHHHHHTCE----E--CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCTT
T ss_pred CcEEEEcCCCceEEcCHHHHHHHHHHhCCc----c--cCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCCC
Confidence 368999999999999998887663222110 0 23322 12221 12456777777665431
Q ss_pred --EE--EcCC-----CCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 --FF--LLPV-----SGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 --~~--V~~~-----~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+. .+...|||..||+.+-. ..|+.+++|-|..
T Consensus 337 ~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~-vfD~~~~rIGfA~ 381 (383)
T 2x0b_A 337 KLCTLAIHAMDIPPPTGPTWALGATFIRKFYT-EFDRRNNRIGFAL 381 (383)
T ss_dssp SEEEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CeEEEEEEecccCCCCCCcEEEChHHhcceEE-EEECCCCEEeEEE
Confidence 22 1111 23468999999999986 7999999998864
No 50
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=91.32 E-value=0.63 Score=44.22 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=59.2
Q ss_pred EEECCeE------EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eEeeeEEeecceEEEE--
Q 042094 335 GNLKKHG------VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KCSHVPVNSQGFQFHL-- 403 (485)
Q Consensus 335 ~~i~~~~------v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~v~v~i~~~~~~~-- 403 (485)
+.|++.. ..++||||++..++..++++.+.-..... .. . |.. +.|.. ....+.|.++|..+.+
T Consensus 210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~-~~----~-g~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 283 (351)
T 1tzs_A 210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAA-PV----D-GEYAVECANLNVMPDVTFTINGVPYTLSP 283 (351)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCE-EC----S-SSEEECGGGGGGSCCEEEEETTEEEEECT
T ss_pred EEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCc-cc----C-CeEEEeCCCCccCCcEEEEECCEEEEECH
Confidence 4556654 47999999999999998887653211100 00 0 111 11111 1123445555544322
Q ss_pred -------------EEE--EcCC-----CCCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 404 -------------DFF--LLPV-----SGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 404 -------------~~~--V~~~-----~~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
.++ +.+. .....|||..||+.+-. ..|+.+++|.|...
T Consensus 284 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~~~rigfA~~ 341 (351)
T 1tzs_A 284 TAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYS-VFDRGNNRVGLAPA 341 (351)
T ss_dssp TTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEE-EEETTTTEEEEEEB
T ss_pred HHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEE-EEECCCCEEEEEEC
Confidence 121 2221 23468999999999986 79999999999754
No 51
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=91.03 E-value=0.42 Score=44.76 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=57.8
Q ss_pred EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eEeeeEEeecceEEEEE-----------EE-
Q 042094 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KCSHVPVNSQGFQFHLD-----------FF- 406 (485)
Q Consensus 342 v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~v~v~i~~~~~~~~-----------~~- 406 (485)
..++||||++..++..++++.+.-..... ...+|.. +.|.. ....+.|.++|..+.+. ++
T Consensus 208 ~~~iiDsGtt~~~lP~~~~~~i~~~~~~~-----~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~C~~ 282 (320)
T 4aa9_A 208 CQAILDTGTSVLFGPSSDILKIQMAIGAT-----ENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKDQGFCTS 282 (320)
T ss_dssp EEEEECTTCSSEEEEHHHHHHHHHHTTCE-----ECTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEEETTEEEE
T ss_pred cEEEEECCCCcEECCHHHHHHHHHHhCCc-----ccCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccCCCCeEEE
Confidence 57999999999999998877663221110 0011221 12211 12346667777655432 11
Q ss_pred -EcC-CCCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 407 -LLP-VSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 407 -V~~-~~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
+.+ ..+...|||..||+.+-. ..|+.+++|.|-.
T Consensus 283 ~i~~~~~~~~~ilG~~fl~~~y~-vfD~~~~~igfA~ 318 (320)
T 4aa9_A 283 GFQGDNNSELWILGDVFIREYYS-VFDRANNRVGLAK 318 (320)
T ss_dssp SEEEETTCCCEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEcCCCCCcEEEChHHhcceEE-EEECCCCEEEEEe
Confidence 112 122358999999999986 7999999998863
No 52
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=90.85 E-value=0.67 Score=43.46 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCC-eeeecceEeeeEEeecceEEEEE-------------E
Q 042094 340 HGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG-VISSSGKCSHVPVNSQGFQFHLD-------------F 405 (485)
Q Consensus 340 ~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~-~~~~~~~~~~v~v~i~~~~~~~~-------------~ 405 (485)
....++||||++..++..++++.+.-..... .....+|. .+.|......+.|.++|..+.+. +
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga---~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C 283 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYYEQVNGA---SYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQT 283 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTSTTC---EEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEE
T ss_pred CCceEEEeCCCcceeCCHHHHHHHHHhCCCc---EEcCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCeE
Confidence 3467999999999999999988764332100 00001121 11222222346666666654431 2
Q ss_pred E--EcCCC-CCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 406 F--LLPVS-GCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 406 ~--V~~~~-~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
+ +.+.. ....|||..||+.+-. ..|+.+++|-|..
T Consensus 284 ~~~i~~~~~~~~~IlG~~fl~~~y~-vfD~~~~riGfA~ 321 (323)
T 1izd_A 284 FGGIQSNSGIGFSIFGDVFLKSQYV-VFDASGPRLGFAA 321 (323)
T ss_dssp EESEEECTTTSSEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEEEcCCCCCcEEEChHHhcCEEE-EEECCCCEEEEee
Confidence 1 12222 2468999999999986 7999999998864
No 53
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=90.82 E-value=0.39 Score=45.44 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=58.3
Q ss_pred EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCeeeecc--eEeeeEEeecceEEEEE---------------
Q 042094 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGVISSSG--KCSHVPVNSQGFQFHLD--------------- 404 (485)
Q Consensus 342 v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~~~~~~--~~~~v~v~i~~~~~~~~--------------- 404 (485)
..++||||++..++..++++.+.-..... . ..+|-.+.|.. ....+.|.++|..+.+.
T Consensus 221 ~~~iiDsGtt~~~lP~~~~~~i~~~~~~~----~-~~~g~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~ 295 (341)
T 3k1w_A 221 CLALVDTGASYISGSTSSIEKLMEALGAK----K-RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKL 295 (341)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCE----E-CSSCEEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCTTSE
T ss_pred CEEEEECCCChhcCCHHHHHHHHHHcCCe----e-cCCCeEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCCCCe
Confidence 57999999999999998887763221100 0 11221122221 12356677777655432
Q ss_pred EE--EcC-----CCCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 FF--LLP-----VSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 ~~--V~~-----~~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+ ..+...|||..||+.+-. ..|+.+++|.|..
T Consensus 296 C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~ 338 (341)
T 3k1w_A 296 CTLAIHAMDIPPPTGPTWALGATFIRKFYT-EFDRRNNRIGFAL 338 (341)
T ss_dssp EEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEeEEEecccCCCCCCeEEEChHHhcceEE-EEeCCCCEEEEEE
Confidence 11 111 113468999999999986 7999999998864
No 54
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=90.48 E-value=0.43 Score=45.16 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=60.4
Q ss_pred EEEECC-eEE----EEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCC-eeeec--ceEeeeEEeecceEEEEE-
Q 042094 334 KGNLKK-HGV----TILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG-VISSS--GKCSHVPVNSQGFQFHLD- 404 (485)
Q Consensus 334 ~~~i~~-~~v----~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~-~~~~~--~~~~~v~v~i~~~~~~~~- 404 (485)
.+.|++ ..+ .++||||++..++..++++.+.-.... ......|. .+.|. .....+.+.++|..+.+.
T Consensus 194 ~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~a----~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~ 269 (340)
T 1wkr_A 194 SIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGA----VADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTA 269 (340)
T ss_dssp EEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHHHTC----EECTTTSSEEECHHHHHTCCCEEEEETTEEEEECT
T ss_pred eEEECCCeEccCCCeEEEeCCcccccCCHHHHHHHHHhhCC----EEcCCCCeEEeeccccccCCcEEEEECCEEEEEcH
Confidence 355665 443 799999999999999988876211110 00000111 11111 111345555666544431
Q ss_pred -------------------E--EEcCCC-----CCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 405 -------------------F--FLLPVS-----GCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 405 -------------------~--~V~~~~-----~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
+ .+.++. +...|||..||+.+-. ..|+.+++|.|...
T Consensus 270 ~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~~ 332 (340)
T 1wkr_A 270 NAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYS-VYDTTNKRLGLATT 332 (340)
T ss_dssp GGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEE-EEETTTTEEEEEEC
T ss_pred HHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEE-EEeCCCCeEEEEec
Confidence 1 111211 2348999999999986 79999999999753
No 55
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=90.46 E-value=1.2 Score=43.78 Aligned_cols=102 Identities=11% Similarity=0.184 Sum_probs=63.9
Q ss_pred EEECCe---EEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccC-Ce-eeecc-eEeeeEEeecceEEEEE----
Q 042094 335 GNLKKH---GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG-GV-ISSSG-KCSHVPVNSQGFQFHLD---- 404 (485)
Q Consensus 335 ~~i~~~---~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G-~~-~~~~~-~~~~v~v~i~~~~~~~~---- 404 (485)
+.|++. ...++||||++.+++..++++.+.-..... ...+| .. +.|.. ....+.+.++|..+.+.
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~-----~~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~y 397 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVI-----KVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYY 397 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTTSSCE-----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHH
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHHhCCc-----ccCCCceEEEecCCCCCCcEEEEECCEEEEECHHHh
Confidence 455663 357999999999999999999875433211 11222 11 12211 12346667776655431
Q ss_pred -----------EE--EcCCC--CCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 405 -----------FF--LLPVS--GCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 405 -----------~~--V~~~~--~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
++ +.+.. ....|||..||+.+-. ..|+.+.+|.|...
T Consensus 398 i~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yv-VFD~~n~rIGfA~~ 449 (453)
T 2bju_A 398 LQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFT-VFDYDNHSVGIALA 449 (453)
T ss_dssp EEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEE-EEETTTTEEEEEEE
T ss_pred EeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEE-EEECCCCEEEEEEc
Confidence 21 12222 2368999999999986 79999999998753
No 56
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=90.14 E-value=1.1 Score=42.94 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=59.9
Q ss_pred EEECCe---EEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc-eEeeeEEeecceEEEE------
Q 042094 335 GNLKKH---GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG-KCSHVPVNSQGFQFHL------ 403 (485)
Q Consensus 335 ~~i~~~---~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~-~~~~v~v~i~~~~~~~------ 403 (485)
+.|++. ...++||||++..++..++++.+.-..... ....+|.. +.|.. ....+.|.++|..+.+
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~----~~~~~g~~~~~C~~~~~P~i~f~f~g~~~~l~~~~yi 322 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVI----KVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 322 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCE----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCc----ccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHhE
Confidence 667775 468999999999999998887652211100 00011111 11111 1233455555544332
Q ss_pred ---------EEE--EcCCC--CCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 404 ---------DFF--LLPVS--GCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 404 ---------~~~--V~~~~--~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
.++ +.+.. ....|||..||+.+-. ..|+.+++|-|..
T Consensus 323 ~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yv-vfD~~~~riGfA~ 372 (375)
T 1miq_A 323 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFT-VFDYDKESVGFAI 372 (375)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEE-EEETTTTEEEEEE
T ss_pred eeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEE-EEECCCCEEEEEE
Confidence 111 12222 2468999999999986 7999999999864
No 57
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=90.13 E-value=1.4 Score=41.53 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=59.2
Q ss_pred EEECCeE----EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCC-eeeecc-eEeeeEEeec-ceEEEEE--E
Q 042094 335 GNLKKHG----VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG-VISSSG-KCSHVPVNSQ-GFQFHLD--F 405 (485)
Q Consensus 335 ~~i~~~~----v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~-~~~~~~-~~~~v~v~i~-~~~~~~~--~ 405 (485)
+.|++.. ..++||||++..++..++++.+.-....... ......|. .+.|.. ....+.|.++ |..+.+. -
T Consensus 204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~-~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~~ 282 (339)
T 3fv3_A 204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADKAGARLV-QVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNTE 282 (339)
T ss_dssp EEESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEEE-EEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGGG
T ss_pred EEECCEeecCCccEEEeCCCCCEecCHHHHHHHHHHcCCEEc-cccccCceEEEecCCCCCCcEEEEECCCCEEEECHHH
Confidence 4455554 3599999999999999988876322210000 00000111 111111 1234556663 4444332 1
Q ss_pred EEcCC---C-------CCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 406 FLLPV---S-------GCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 406 ~V~~~---~-------~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
++++. . .-..|||..||+.+-. ..|+.+++|.|...
T Consensus 283 ~~~~~~~~~C~~~i~~~~~~ilG~~fl~~~y~-vfD~~~~~igfA~~ 328 (339)
T 3fv3_A 283 YVYQNGDGTCLWGIQPSDDTILGDNFLRHAYL-LYNLDANTISIAQV 328 (339)
T ss_dssp GEEECSSSCEEESEEECSSCEECHHHHTTEEE-EEETTTTEEEEEEB
T ss_pred heeeCCCCeEEEEEEeCCcEEeChHHHhCEEE-EEECCCCEEEEEec
Confidence 11110 0 1247999999999986 79999999999753
No 58
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=90.02 E-value=0.57 Score=44.33 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=57.0
Q ss_pred EEECCeE-----EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCC---eeeecceEeeeEEeec-ceEEEEE-
Q 042094 335 GNLKKHG-----VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGG---VISSSGKCSHVPVNSQ-GFQFHLD- 404 (485)
Q Consensus 335 ~~i~~~~-----v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~---~~~~~~~~~~v~v~i~-~~~~~~~- 404 (485)
+.|++.. ..++||||++..++..++++.+.-..... ......|. .+.|.. ...+.|.++ |..+.+.
T Consensus 201 i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~---~~~~~~~~~~~~~~C~~-~p~i~f~f~~g~~~~vp~ 276 (342)
T 3pvk_A 201 VEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGK---LTQDSNGNSFYEVDCNL-SGDVVFNFSKNAKISVPA 276 (342)
T ss_dssp EEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHHTTCE---EEECTTSCEEEEECSCC-CSEEEEEESTTCEEEEEG
T ss_pred EEECCEEecCCCceEEEeCCCCCeecCHHHHHHHHHHcCCe---ecccCCCceEEEEecCC-CCceEEEECCCCEEEEcH
Confidence 4556654 57999999999999999887663221100 00000110 011111 123344443 3322221
Q ss_pred -EEEcC---------------C-CCCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 405 -FFLLP---------------V-SGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 405 -~~V~~---------------~-~~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
-++++ . ..-..|||..||+.+-. ..|+.+++|.|...
T Consensus 277 ~~~~~~~~~~~g~~~~~C~~~i~~~~~~ilG~~fl~~~y~-vfD~~~~~igfA~~ 330 (342)
T 3pvk_A 277 SEFAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYI-VYDLDDNEISLAQV 330 (342)
T ss_dssp GGGEEC----------CEEESEEECTTCEECHHHHTTEEE-EEETTTTEEEEEEB
T ss_pred HHheeeccccCCCcCCeeEEEEeeCCCeEeCHHHHhcEEE-EEECCCCEEEEEec
Confidence 01111 0 01357999999999986 79999999999753
No 59
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=89.80 E-value=0.68 Score=43.64 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=56.7
Q ss_pred EEECCeE----EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccC-Ce--eeecceEeeeEEee-cceEEEEE--
Q 042094 335 GNLKKHG----VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG-GV--ISSSGKCSHVPVNS-QGFQFHLD-- 404 (485)
Q Consensus 335 ~~i~~~~----v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G-~~--~~~~~~~~~v~v~i-~~~~~~~~-- 404 (485)
+.|++.. ..++||||++..++..++++.+.-..... .. ..+ .. +.|.. ...+.|.+ +|..+.+.
T Consensus 202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~----~~-~~~~~~~~~~C~~-~p~i~f~f~~g~~~~i~~~ 275 (334)
T 1j71_A 202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGAT----WD-SRNEIYRLPSCDL-SGDAVFNFDQGVKITVPLS 275 (334)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCE----EE-TTTTEEECSSSCC-CSEEEEEESTTCEEEEEGG
T ss_pred EEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHHcCCc----cc-CCCceEEEEcCCC-CCceEEEEcCCcEEEECHH
Confidence 4556654 46899999999999999887652211100 00 111 00 11111 12344444 34433321
Q ss_pred -----------EE--EcCCCCCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 -----------FF--LLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 -----------~~--V~~~~~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+. ...|||..||+.+-. ..|+.+++|.|..
T Consensus 276 ~y~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~-vfD~~~~~igfA~ 322 (334)
T 1j71_A 276 ELILKDSDSSICYFGISRN--DANILGDNFLRRAYI-VYDLDDKTISLAQ 322 (334)
T ss_dssp GGEEECSSSSCEEESEEEC--TTCEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred HheeecCCCCeeEEEEeEC--CCcEEChHhhccEEE-EEECCCCEEEEEe
Confidence 11 1111 258999999999986 7999999999975
No 60
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=89.15 E-value=0.44 Score=44.88 Aligned_cols=94 Identities=15% Similarity=0.245 Sum_probs=57.7
Q ss_pred EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eEeeeEEeecceEEEEE-----------EE-
Q 042094 342 VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KCSHVPVNSQGFQFHLD-----------FF- 406 (485)
Q Consensus 342 v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~v~v~i~~~~~~~~-----------~~- 406 (485)
..++||||++..++..++++.+.-..... ...+|.. +.|.. ....+.|.++|..+.+. ++
T Consensus 212 ~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~~ 286 (329)
T 1htr_B 212 CQAIVDTGTSLLTVPQQYMSALLQATGAQ-----EDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNGYCTV 286 (329)
T ss_dssp EEEEECTTCCSEEEEGGGHHHHHHHHTCE-----ECTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECSSCEEE
T ss_pred ceEEEecCCccEECCHHHHHHHHHHhCCe-----ecCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCCCEEEE
Confidence 57999999999999998887663221100 0112221 12211 12346677777655432 22
Q ss_pred -EcCC-----CCC-CeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 407 -LLPV-----SGC-DIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 407 -V~~~-----~~~-dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
+.+. .+. ..|||..||+.+-. ..|+.+++|-|..
T Consensus 287 ~~~~~~~~~~~~~~~~iLG~~fl~~~yv-vfD~~~~~igfa~ 327 (329)
T 1htr_B 287 GVEPTYLSSQNGQPLWILGDVFLRSYYS-VYDLGNNRVGFAT 327 (329)
T ss_dssp SEEEECCCCTTSSCEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEECCCCCCCCCceEEEChHHhccEEE-EEECCCCEEEEEe
Confidence 2121 122 58999999999986 7999999998864
No 61
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=89.08 E-value=0.73 Score=43.19 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=59.4
Q ss_pred eEEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecceEeeeEEeecceEEEEE--------------
Q 042094 340 HGVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSGKCSHVPVNSQGFQFHLD-------------- 404 (485)
Q Consensus 340 ~~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~~~~~v~v~i~~~~~~~~-------------- 404 (485)
....++||||++..++..++++.+.-..... .....+|.. +.|......+.|.++|..+.+.
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a---~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~~ 282 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGA---QQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGST 282 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHHHTTSTTC---EEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEECSSSSC
T ss_pred CCceEEEeCCCCceeCCHHHHHHHHHhCCCc---eEcCcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEeccCCCCe
Confidence 3467999999999999999988764322100 001111211 1222222346666666654431
Q ss_pred EE--EcCCC-CCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 FF--LLPVS-GCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 ~~--V~~~~-~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+.. ....|||..||+.+-. ..|+.+++|-|..
T Consensus 283 C~~~i~~~~~~~~~ILG~~fl~~~y~-vfD~~~~riGfA~ 321 (323)
T 1bxo_A 283 CLGGIQSNSGIGFSIFGDIFLKSQYV-VFDSDGPQLGFAP 321 (323)
T ss_dssp EEESEEECTTCSSEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEEEECCCCCCcEEEChHHHcCEEE-EEECCCCEEEEec
Confidence 11 11111 2358999999999986 7999999998864
No 62
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=88.99 E-value=0.46 Score=44.99 Aligned_cols=104 Identities=15% Similarity=0.288 Sum_probs=58.7
Q ss_pred EEECCeE----EEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccC-C-eeeecceEeeeEEee-cceEEEEE--E
Q 042094 335 GNLKKHG----VTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADG-G-VISSSGKCSHVPVNS-QGFQFHLD--F 405 (485)
Q Consensus 335 ~~i~~~~----v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G-~-~~~~~~~~~~v~v~i-~~~~~~~~--~ 405 (485)
+.|++.. ..++||||++..++..++++.+.-..... ....-..+ . .+.|.. ...+.|.+ +|..+.+. -
T Consensus 202 i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~--~~~~~~~~~~~~~~C~~-~p~i~f~f~~g~~~~i~~~~ 278 (342)
T 2qzx_A 202 VNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYAIGAQ--MKFDSAGNKVYVADCKT-SGTIDFQFGNNLKISVPVSE 278 (342)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCE--EEECTTSCEEEEECTTC-CCEEEEEETTTEEEEEEGGG
T ss_pred EEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHHhCCe--eeeccCCCcEEEEECCC-CCcEEEEECCCcEEEEcHHH
Confidence 4556654 46899999999999999888653221100 00000000 0 111111 23445555 45444332 1
Q ss_pred EEcC---------------C-CCCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 406 FLLP---------------V-SGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 406 ~V~~---------------~-~~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
++++ . .....|||..||+.+-. ..|+.+++|.|...
T Consensus 279 ~~~~~~~~~~~~~~~C~~~i~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~~ 330 (342)
T 2qzx_A 279 FLFQTYYTSGKPFPKCEVRIRESEDNILGDNFLRSAYV-VYNLDDKKISMAPV 330 (342)
T ss_dssp GEECCBCTTSCBCSSEEESEEECSSCEECHHHHTTEEE-EEETTTTEEEEEEB
T ss_pred hcccccccCCCCCCccEEEEecCCCcEeChHhhhcEEE-EEECCCCEEEEEee
Confidence 1111 0 01258999999999986 79999999999753
No 63
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=88.29 E-value=1.3 Score=41.44 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=57.5
Q ss_pred EEEEEEcCCCCccccCHHHHhhcCCcc-ccccceEEEEccCC-eeeecceEeeeEEeecceEEEEE--------------
Q 042094 341 GVTILIDSSSTHIFLNSSLAKQYGCPV-TTTTQFQVTVADGG-VISSSGKCSHVPVNSQGFQFHLD-------------- 404 (485)
Q Consensus 341 ~v~aLiDsGSt~sfIs~~~~~~l~l~~-~~~~~~~v~~a~G~-~~~~~~~~~~v~v~i~~~~~~~~-------------- 404 (485)
...++||||++..++..++++.+.-.. ..... ..+|. .+.|......+.|.++|..+.+.
T Consensus 208 ~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~----~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~ 283 (325)
T 1ibq_A 208 GFSAIADTGTTLILLDDEIVSAYYEQVSGAQES----YEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYINYAPVSTGSS 283 (325)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHHTTSTTCBCC----SSSSSCEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCS
T ss_pred CceEEEeCCCCcEeCCHHHHHHHHHhCCCceEc----CcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhcccccCCCCC
Confidence 467999999999999999888763322 10000 00111 11222122345556666544321
Q ss_pred -EE--EcCCC-CCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 -FF--LLPVS-GCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 -~~--V~~~~-~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+.. ....|||..||+.+-. ..|+.+++|-|..
T Consensus 284 ~C~~~i~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~ 323 (325)
T 1ibq_A 284 TCYGGIQSNSGLGLSILGDVFLKSQYV-VFNSEGPKLGFAA 323 (325)
T ss_dssp EEEESEEECTTTCSEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred eEEEEEEcCCCCCceEEChHHhcCEEE-EEECCCCEEEeee
Confidence 11 11211 2358999999999986 7999999998864
No 64
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=88.23 E-value=1 Score=43.67 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.8
Q ss_pred CeeechhHHhhcCCeEEEccCcEEEE
Q 042094 414 DIVLGAEWLRSLGAILWDFSKLTMQF 439 (485)
Q Consensus 414 dvILG~dwL~~~~~i~id~~~~~~~~ 439 (485)
..|||..||+.+-. ..|..+++|-|
T Consensus 358 ~~ILG~~fl~~~yv-vfD~~~~rIGf 382 (403)
T 3aup_A 358 EITLGARQLEENLV-VFDLARSRVGF 382 (403)
T ss_dssp SEEECHHHHTTSCE-EEETTTTEEEE
T ss_pred cEEEChHHhcCeEE-EEECCCCEEEE
Confidence 57999999999986 79999999988
No 65
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=87.83 E-value=1 Score=42.94 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=54.5
Q ss_pred EEEE-EcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eE-eeeEEee--c-----ceEEEEE-----
Q 042094 342 VTIL-IDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KC-SHVPVNS--Q-----GFQFHLD----- 404 (485)
Q Consensus 342 v~aL-iDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~-~~v~v~i--~-----~~~~~~~----- 404 (485)
..++ ||||++..++..++++.+.-..... . ...+|.. +.|.. .. ..+.|.+ + |..+.+.
T Consensus 231 ~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~--~--~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~ 306 (361)
T 1mpp_A 231 AQAFTIDTGTNFFIAPSSFAEKVVKAALPD--A--TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKML 306 (361)
T ss_dssp EEEEEEETTCCSEEEEHHHHHHHHHHHCTT--C--EEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGE
T ss_pred CEEEEECCCCCceeCCHHHHHHHHHHhCCc--c--cCCCCcEEEECCCcccCCCcEEEEEEcCCcCCCCeEEEECHHHhE
Confidence 4689 9999999999998877652211110 0 0011111 11111 11 2344444 4 3333221
Q ss_pred ---------EE--EcCCCCCCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 405 ---------FF--LLPVSGCDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 405 ---------~~--V~~~~~~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
++ +.+..+...|||..||+.+-. ..|+.+++|.|...
T Consensus 307 ~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~yv-vfD~~~~~igfa~~ 354 (361)
T 1mpp_A 307 LPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVN-VYDFGKNRIGFAPL 354 (361)
T ss_dssp EECSSSSCEEEESEEEESSSCCEEEHHHHTTEEE-EEETTTTEEEEEEB
T ss_pred EecCCCCCeeEEEEEeCCCCCEEEChHHhccEEE-EEECCCCEEEEEEc
Confidence 11 122223468999999999986 79999999999753
No 66
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=87.31 E-value=1.1 Score=42.86 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=58.6
Q ss_pred EEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecc--eEeeeEEeecceEEEEE-----------EE
Q 042094 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSG--KCSHVPVNSQGFQFHLD-----------FF 406 (485)
Q Consensus 341 ~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~v~v~i~~~~~~~~-----------~~ 406 (485)
...|+||||++..++..++++.+.-..... ...+|.. +.|.. ....+.|.++|..+.+. ++
T Consensus 253 ~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-----~~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~~~~~C~ 327 (370)
T 3psg_A 253 GCQAIVDTGTSLLTGPTSAIANIQSDIGAS-----ENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCT 327 (370)
T ss_dssp CEEEEECTTCCSEEEEHHHHHHHHHHTTCE-----ECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEE
T ss_pred CceEEEcCCCCcEECCHHHHHHHHHHhCCc-----ccCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhcccCCCEEE
Confidence 357999999999999998887763221110 0122221 12211 12356777777765542 11
Q ss_pred --E--cCC--CCC-CeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 407 --L--LPV--SGC-DIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 407 --V--~~~--~~~-dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
+ .+. ..- -.|||..||+.+-. ..|+.+++|-|-.
T Consensus 328 ~~~~~~~~~~~~~~~~ILG~~Fl~~~y~-vfD~~~~riGfA~ 368 (370)
T 3psg_A 328 SGFEGMDVPTSSGELWILGDVFIRQYYT-VFDRANNKVGLAP 368 (370)
T ss_dssp ESEEEECCCTTSCCEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEEeCCCCCCCCCcEEeChHHhcceEE-EEECCCCEEEEEE
Confidence 1 111 112 38999999999986 7999999998864
No 67
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=85.97 E-value=2.4 Score=39.71 Aligned_cols=97 Identities=13% Similarity=0.207 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecceEeeeEEeecceEEEEE---------------
Q 042094 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSGKCSHVPVNSQGFQFHLD--------------- 404 (485)
Q Consensus 341 ~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~~~~~v~v~i~~~~~~~~--------------- 404 (485)
...++||||++..++..++++.+.-..... .....+|.. +.|......+.|.++|..+.+.
T Consensus 212 ~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a---~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~ 288 (329)
T 1oew_A 212 SIDGIADTGTTLLYLPATVVSAYWAQVSGA---KSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSS 288 (329)
T ss_dssp EEEEEECTTCCSEEECHHHHHHHHTTSTTC---EEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCSE
T ss_pred CceEEEeCCCCCEECCHHHHHHHHHhCCCc---EEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeecCCCCCe
Confidence 457999999999999999988764322100 000011111 1222222345566666554321
Q ss_pred EE--EcCCC-CCCeeechhHHhhcCCeEEEc-cCcEEEEEE
Q 042094 405 FF--LLPVS-GCDIVLGAEWLRSLGAILWDF-SKLTMQFTW 441 (485)
Q Consensus 405 ~~--V~~~~-~~dvILG~dwL~~~~~i~id~-~~~~~~~~~ 441 (485)
++ +.+.. ....|||..||+.+-. ..|+ .+++|-|..
T Consensus 289 C~~~i~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~riGfA~ 328 (329)
T 1oew_A 289 CFGGIQSSAGIGINIFGDVALKAAFV-VFNGATTPTLGFAS 328 (329)
T ss_dssp EEESEEESTTTSSEEECHHHHTTEEE-EEECSSSCEEEEEE
T ss_pred EEEEEEeCCCCCceEEChHHhcCEEE-EEECCCCceEEEec
Confidence 11 11111 2468999999999986 7999 999998864
No 68
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=84.94 E-value=4.2 Score=38.90 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.8
Q ss_pred CeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 414 DIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 414 dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
-.|||..||+.+-. ..|..+++|-|...
T Consensus 345 ~~ILGd~fl~~~yv-vfD~~~~riGfA~~ 372 (381)
T 1t6e_X 345 AVILGGAQMEDFVL-DFDMEKKRLGFSRL 372 (381)
T ss_dssp SEEECHHHHTTEEE-EEETTTTEEEEEEC
T ss_pred eEEEChHHhCCcEE-EEECCCCEEEEecc
Confidence 48999999999986 79999999999854
No 69
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=84.41 E-value=0.43 Score=47.25 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 413 CDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 413 ~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
...|||..||+.+-. ..|+.+++|-|..
T Consensus 391 ~~~ILG~~fl~~~yv-vfD~~~~rIGfA~ 418 (455)
T 3lpj_A 391 TGTVMGAVIMEGFYV-VFDRARKRIGFAV 418 (455)
T ss_dssp SCEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeEE-EEECCCCEEEEEe
Confidence 468999999999996 7999999999974
No 70
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=83.85 E-value=3.8 Score=38.32 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCccccCHHHHhhcCCccccccceEEEEccCCe-eeecceEeeeEEeecceEEEEE---------------
Q 042094 341 GVTILIDSSSTHIFLNSSLAKQYGCPVTTTTQFQVTVADGGV-ISSSGKCSHVPVNSQGFQFHLD--------------- 404 (485)
Q Consensus 341 ~v~aLiDsGSt~sfIs~~~~~~l~l~~~~~~~~~v~~a~G~~-~~~~~~~~~v~v~i~~~~~~~~--------------- 404 (485)
...++||||++..++..++++.+.-..... .....+|.. +.|......+.|.++|..+.+.
T Consensus 213 ~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a---~~~~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~ 289 (329)
T 3c9x_A 213 SIDGIADTGTTLLLLDDNVVDAYYANVQSA---QYDNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLNLTPLEEGSST 289 (329)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHHTTCTTC---EEETTTTEEEEETTCCCCCEEEEETTEEEEECGGGGEEEESSTTCSE
T ss_pred CceEEEECCCCcEeCCHHHHHHHHHhCCCc---EEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeccCCCCCe
Confidence 468999999999999999888764322100 000011111 1222112345555555443321
Q ss_pred EE--EcCCC-CCCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 405 FF--LLPVS-GCDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 405 ~~--V~~~~-~~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
++ +.+.. ....|||..||+.+-. ..|+.+++|-|..
T Consensus 290 C~~~i~~~~~~~~~ILG~~fl~~~y~-vfD~~~~riGfA~ 328 (329)
T 3c9x_A 290 CFGGLQSSSGIGINIFGDVALKAALV-VFDLGNERLGWAQ 328 (329)
T ss_dssp EEESEEECTTTTSEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEEEEcCCCCCcEEEChHHhccEEE-EEECCCCEEeEec
Confidence 11 11221 2458999999999986 7999999998864
No 71
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=83.01 E-value=0.5 Score=45.91 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 413 CDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 413 ~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
...|||..||+.+-. ..|+.+++|-|..
T Consensus 345 ~~~ILG~~fl~~~yv-vfD~~~~rIGfA~ 372 (402)
T 3vf3_A 345 TGTVMGAVIMEGFYV-VFDRARKRIGFAV 372 (402)
T ss_dssp SCEEECHHHHTTEEE-EEEGGGTEEEEEE
T ss_pred CcEEEChHHhCCeEE-EEECCCCEEEEEe
Confidence 468999999999996 7999999999975
No 72
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=82.63 E-value=2.2 Score=40.93 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCeeechhHHhhcCCeEEEccCcEEEEEEC
Q 042094 413 CDIVLGAEWLRSLGAILWDFSKLTMQFTWK 442 (485)
Q Consensus 413 ~dvILG~dwL~~~~~i~id~~~~~~~~~~~ 442 (485)
...|||..||+.+-. ..|+.+++|.|...
T Consensus 326 ~~~ILG~~fl~~~yv-vfD~~~~rIGfA~~ 354 (383)
T 2ewy_A 326 NALVIGATVMEGFYV-IFDRAQKRVGFAAS 354 (383)
T ss_dssp SCEEECHHHHTTEEE-EEETTTTEEEEEEC
T ss_pred CcEEEChHHhCCeeE-EEECCCCeEEEEec
Confidence 358999999999986 79999999999753
No 73
>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=80.93 E-value=1.7 Score=31.93 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=34.7
Q ss_pred ChHHHHHHHHhhhHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 042094 165 PESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204 (485)
Q Consensus 165 ~e~~~~~~f~~GL~~~i~~~v~~~~p~tl~~~~~~a~~~e 204 (485)
-|-..+.+|+.-||.+++..|..+.|.+-++++.++..+.
T Consensus 50 lElLVLEQFL~iLP~eiq~wV~~~~P~s~eeav~lvEdl~ 89 (94)
T 2fi2_A 50 LELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLR 89 (94)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3445688999999999999999999999999999877654
No 74
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=80.67 E-value=1.5 Score=42.39 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 413 CDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 413 ~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
...|||..||+.+-. ..|+.+++|-|..
T Consensus 338 ~~~ILG~~fl~~~yv-vfD~~~~rIGfA~ 365 (395)
T 2qp8_A 338 TGTVMGAVIMEGFYV-VFDRARKRIGFAV 365 (395)
T ss_dssp SCEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeeE-EEECCCCEEEEEe
Confidence 458999999999986 7999999999975
No 75
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=80.11 E-value=3.5 Score=38.41 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=55.0
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHh-----hcCCc-cc------cccceEEEEccCCeeeecceEeeeEEeec
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK-----QYGCP-VT------TTTQFQVTVADGGVISSSGKCSHVPVNSQ 397 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~-----~l~l~-~~------~~~~~~v~~a~G~~~~~~~~~~~v~v~i~ 397 (485)
...+.+.|+.+.+.++|||||+...|...-+. ..+.- .. ...++.+..++|+.+. |....=.|.++
T Consensus 16 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~ig 93 (323)
T 1bxo_A 16 EYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSAS--GNVFTDSVTVG 93 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSCEEE--EEEEEEEEEET
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCCeEE--EEEEEEEEEEC
Confidence 46788889999999999999999988643221 11110 00 1235667777887443 33333357777
Q ss_pred ceEEE-EEEEEcCC--------CCCCeeechhHH
Q 042094 398 GFQFH-LDFFLLPV--------SGCDIVLGAEWL 422 (485)
Q Consensus 398 ~~~~~-~~~~V~~~--------~~~dvILG~dwL 422 (485)
+.... ..|-+... ...|=|||+-+-
T Consensus 94 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 127 (323)
T 1bxo_A 94 GVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFS 127 (323)
T ss_dssp TEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCG
T ss_pred CEEECcEEEEEEEecCcccccCCCCceEEEeCcc
Confidence 76533 33443321 357889987663
No 76
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=79.57 E-value=3.3 Score=40.72 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=55.7
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHH-----hhcCCc-cc-------cccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLA-----KQYGCP-VT-------TTTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~-----~~l~l~-~~-------~~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...-| ...+.- .. ...++.+..++|+ + .|....=.|
T Consensus 138 ~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs-~--~G~~~~Dtv 214 (451)
T 3qvc_A 138 LSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT-I--SGIFSKDLV 214 (451)
T ss_dssp EEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE-E--EEEEEEEEE
Confidence 467788888 7999999999999998865332 222211 00 1134566777776 2 344333367
Q ss_pred eecceEEEEEEEEcCC----------CCCCeeechhH
Q 042094 395 NSQGFQFHLDFFLLPV----------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~~~~~V~~~----------~~~dvILG~dw 421 (485)
.+++......|-+... ...|=|||+-+
T Consensus 215 ~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 215 TIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW 251 (451)
T ss_dssp EETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred EECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence 8888776655555443 24688888854
No 77
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=78.82 E-value=4 Score=40.14 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=55.9
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHHh-----hcCC-cccc-------ccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAK-----QYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~-----~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...-|. ..+. .... ..++.+..++|+ + .|....=.|
T Consensus 139 ~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs-~--~G~~~~Dtv 215 (453)
T 2bju_A 139 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT-V--SGFFSKDLV 215 (453)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC-e--EEEEEEEEE
Confidence 567788888 89999999999999988543222 2211 1111 124667777776 3 344443467
Q ss_pred eecceEEEEEEEEcCC----------CCCCeeechhH
Q 042094 395 NSQGFQFHLDFFLLPV----------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~~~~~V~~~----------~~~dvILG~dw 421 (485)
.+++..+...|-+... ...|=|||+-+
T Consensus 216 ~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 216 TVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp EETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred EEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence 8888766544544432 23688998765
No 78
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=78.16 E-value=4.3 Score=37.86 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=55.2
Q ss_pred CeEEEEEEECCeEEEEEEcCCCCccccCHHHH-----hhcCC-cc-----c-cccceEEEEccCCeeeecceEeeeEEee
Q 042094 329 NTMRLKGNLKKHGVTILIDSSSTHIFLNSSLA-----KQYGC-PV-----T-TTTQFQVTVADGGVISSSGKCSHVPVNS 396 (485)
Q Consensus 329 ~~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~-----~~l~l-~~-----~-~~~~~~v~~a~G~~~~~~~~~~~v~v~i 396 (485)
....+.+.|+.+.+.++|||||+...|...-+ ...+. .. . ...++.+..++|+.+. |....=.|.+
T Consensus 14 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~i 91 (325)
T 1ibq_A 14 EEYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWDISYGDGSSAS--GDVYRDTVTV 91 (325)
T ss_dssp SCEEEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEEEECSSSCEEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEEEEeCCCCEEE--EEEEEeEEEE
Confidence 35678888899999999999999998854322 11111 00 0 1245677778887443 3333335777
Q ss_pred cceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 397 QGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 397 ~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
++..+. ..|-+... ...|=|||+-+
T Consensus 92 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (325)
T 1ibq_A 92 GGVTTNKQAVEAASKISSEFVQDTANDGLLGLAF 125 (325)
T ss_dssp TTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSC
T ss_pred CCEEEcceEEEEEEecCccccccCCCceEEEeCc
Confidence 776543 33433321 35788998765
No 79
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=78.05 E-value=4.5 Score=37.72 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=54.7
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHh-----hcCC-ccc------cccceEEEEccCCeeeecceEeeeEEeec
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK-----QYGC-PVT------TTTQFQVTVADGGVISSSGKCSHVPVNSQ 397 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~-----~l~l-~~~------~~~~~~v~~a~G~~~~~~~~~~~v~v~i~ 397 (485)
...+.+.|+.+.+.++|||||+...|...-+. ..+. ... ...++.+..++|+.+. |....=.|.++
T Consensus 16 ~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~ig 93 (323)
T 1izd_A 16 EYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGSSAS--GDVYKDKVTVG 93 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTSCEEE--EEEEEEEEEET
T ss_pred EEEEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCCCeEE--EEEEEEEEEEC
Confidence 46788889999999999999999988653221 1111 000 1134566677776433 33333357777
Q ss_pred ceEEE-EEEEEcCC--------CCCCeeechhHH
Q 042094 398 GFQFH-LDFFLLPV--------SGCDIVLGAEWL 422 (485)
Q Consensus 398 ~~~~~-~~~~V~~~--------~~~dvILG~dwL 422 (485)
+.... ..|-+... ...|=|||+-+-
T Consensus 94 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 127 (323)
T 1izd_A 94 GVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFS 127 (323)
T ss_dssp TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCG
T ss_pred CEEECceEEEEEEeccccccccCCCceEEecCcc
Confidence 76543 34444332 356888887653
No 80
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=77.76 E-value=4.5 Score=29.81 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHHHHHHhhhHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Q 042094 168 FFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQEEY 206 (485)
Q Consensus 168 ~~~~~f~~GL~~~i~~~v~~~~p~tl~~~~~~a~~~e~~ 206 (485)
..+.+|+.-||.+++..|..+.|.+-.+++.++..+...
T Consensus 52 LVLEQFL~ilP~e~q~wv~~~~p~s~~eav~l~E~l~~~ 90 (93)
T 3lhr_A 52 VVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLESE 90 (93)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999998876654
No 81
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=77.22 E-value=2.4 Score=31.67 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=23.7
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCH
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNS 357 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~ 357 (485)
...+.+.|+ .+.+.++|||||+...|..
T Consensus 14 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred eEEEEEEECCCCeEEEEEEeCCCCceEEeE
Confidence 467788887 7999999999999988754
No 82
>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=77.20 E-value=2.2 Score=31.50 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 042094 166 ESFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204 (485)
Q Consensus 166 e~~~~~~f~~GL~~~i~~~v~~~~p~tl~~~~~~a~~~e 204 (485)
|-..+.+|+.-||.+++..|..+.|.+-++++.++..+.
T Consensus 53 ElLVLEQFL~iLP~eiq~wV~~~~P~s~eeav~lvEdl~ 91 (98)
T 1y7q_A 53 ELLVMEQFLTILPEEIQARVRHRCLMSSKEIVTLVEDFH 91 (98)
T ss_dssp HHHHHHHHHHHSCTHHHHHHHTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 445688999999999999999999999999999877664
No 83
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=76.53 E-value=11 Score=36.07 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=55.2
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHH-------HhhcCC-cccc-------ccceEEEEccCCeeeecceEeee
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSL-------AKQYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHV 392 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~-------~~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v 392 (485)
...+.+.|+ .+.+.++|||||+...|...- |...+. .... ..++.+..++|+ + .|....=
T Consensus 62 ~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D 138 (383)
T 2x0b_A 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT-V--SGFLSQD 138 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc-E--EEEEEee
Confidence 567788887 689999999999999885432 222221 1111 124667777775 2 3444334
Q ss_pred EEeecceEEEEEEEEcC--------CCCCCeeechhH
Q 042094 393 PVNSQGFQFHLDFFLLP--------VSGCDIVLGAEW 421 (485)
Q Consensus 393 ~v~i~~~~~~~~~~V~~--------~~~~dvILG~dw 421 (485)
.|.+++......|-+.. ...+|=|||+-+
T Consensus 139 tv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 139 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 175 (383)
T ss_dssp EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred EEEEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence 67888876554444432 134789999865
No 84
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=76.15 E-value=4.7 Score=37.84 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=53.3
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHHhhcCCcc---ccccceEEEEccCCeeeecceEeeeEEeecceEEE-E
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAKQYGCPV---TTTTQFQVTVADGGVISSSGKCSHVPVNSQGFQFH-L 403 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~~l~l~~---~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~~~~~-~ 403 (485)
...+.+.|+ .+.+.++|||||+...|... ...+-.. ....++.+..++|+ + .|....=.|.+++..+. .
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s~Ss~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv~~g~~~v~~~ 87 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKTSTSSATSDKVSVTYGSGS-F--SGTEYTDTVTLGSLTIPKQ 87 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCCTTCEEEEEEEEEECSSCE-E--EEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCcCCccccCceEEEEECCcE-E--EEEEEEEEEEECCEEEcce
Confidence 567888888 89999999999999988642 1111100 11235677777875 3 34443346777776432 3
Q ss_pred EEEEcC----CCCCCeeechhH
Q 042094 404 DFFLLP----VSGCDIVLGAEW 421 (485)
Q Consensus 404 ~~~V~~----~~~~dvILG~dw 421 (485)
.|-+.. ....|=|||+-+
T Consensus 88 ~fg~~~~~~~~~~~~GilGLg~ 109 (340)
T 1wkr_A 88 SIGVASRDSGFDGVDGILGVGP 109 (340)
T ss_dssp EEEEEEEEESCTTCSEEEECSC
T ss_pred EEEEEEccCCCcCCCcEEECCc
Confidence 333332 235788888765
No 85
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=74.81 E-value=2.7 Score=40.83 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred CeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 414 DIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 414 dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
-.|||..||+.+-. ..|..+++|-|..
T Consensus 371 ~~IlGd~fl~~~~v-vfD~~~~riGfa~ 397 (413)
T 3vla_A 371 SIVIGGHQLEDNLV-QFDLATSRVGFSG 397 (413)
T ss_dssp SEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred ceeEehhhhcCeEE-EEECCCCEEEEEE
Confidence 36999999999986 7999999999874
No 86
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=72.81 E-value=12 Score=34.93 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=54.0
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHHhhc----CC-ccc--------cccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAKQY----GC-PVT--------TTTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~~l----~l-~~~--------~~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...-+... +. ... ....+.+..++|+.+. |....=.|
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v 93 (329)
T 1oew_A 16 AYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDGSSSS--GDVYTDTV 93 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSCEEE--EEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCccccccCccCCccCccceecCCCeEEEEeCCCCcEE--EEEEEEEE
Confidence 567888888 8999999999999998865433211 11 000 1124556677776433 33333357
Q ss_pred eecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
.+++..+. ..|-+... ...|=|||+-+
T Consensus 94 ~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 129 (329)
T 1oew_A 94 SVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAF 129 (329)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EECCEEEeeeEEEEEEecCccccccCCCceEEEecc
Confidence 77776543 33433321 35788988765
No 87
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=72.01 E-value=7 Score=36.60 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=55.3
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH-------HHhhcCCc-cc-------cccceEEEEccCCeeeecceEeee
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS-------LAKQYGCP-VT-------TTTQFQVTVADGGVISSSGKCSHV 392 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~-------~~~~l~l~-~~-------~~~~~~v~~a~G~~~~~~~~~~~v 392 (485)
...+.+.|+ .+.+.++|||||+...|... .|...+.- .. ....+.+..++|+ + .|....=
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~--~G~~~~D 95 (341)
T 3k1w_A 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT-V--SGFLSQD 95 (341)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE-E--EEEEEEE
Confidence 467788887 59999999999999988532 22222221 11 1134567777775 2 4444334
Q ss_pred EEeecceEEEEEEEEcCC--------CCCCeeechhH
Q 042094 393 PVNSQGFQFHLDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 393 ~v~i~~~~~~~~~~V~~~--------~~~dvILG~dw 421 (485)
.|.+++..+...|-+... ...|=|||+-+
T Consensus 96 ~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 96 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred EEEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence 678888766555555432 23588988764
No 88
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=71.54 E-value=20 Score=33.11 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=53.4
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH-----HHhhcCC-cccc-------ccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS-----LAKQYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~-----~~~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|... .|...+. .... ..++.+..++|+ + .|....=.|
T Consensus 15 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~v 91 (323)
T 3cms_A 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS-M--QGILGYDTV 91 (323)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC-e--EEEEEEEEE
Confidence 567788887 68999999999999987532 2332221 1111 124667777775 2 344433467
Q ss_pred eecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
.+++.... ..|-+... ...|=|||+-+
T Consensus 92 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 127 (323)
T 3cms_A 92 TVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY 127 (323)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred EECCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence 77876543 34444322 24688888754
No 89
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=70.49 E-value=16 Score=34.00 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=54.7
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHHh-----hcCC-cc------c--cccceEEEEccCCeeeecceEeeeE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAK-----QYGC-PV------T--TTTQFQVTVADGGVISSSGKCSHVP 393 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~-----~l~l-~~------~--~~~~~~v~~a~G~~~~~~~~~~~v~ 393 (485)
...+.+.|+ .+.+.++|||||+...|...-+. ..+. .. . ...++.+..++|+.+. |....=.
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~--G~~~~D~ 93 (329)
T 3c9x_A 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSS--GDVYTDK 93 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEE--EEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEE--EEEEEEE
Confidence 467788888 89999999999999988643221 1111 00 0 1235677788887543 3333335
Q ss_pred EeecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 394 VNSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 394 v~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
|.+++..+. ..|-+... ...|=|||+-+
T Consensus 94 v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 130 (329)
T 3c9x_A 94 VTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAF 130 (329)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEECCEEEcceEEEEEEecCccccccCCCceeEEeCc
Confidence 777776543 33433321 35788888765
No 90
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=70.36 E-value=20 Score=33.04 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=54.2
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH-----HHhhcCCc-ccc-------ccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS-----LAKQYGCP-VTT-------TTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~-----~~~~l~l~-~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|... .+...+.- ... ...+.+..++|+ + .|....=.|
T Consensus 12 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~--~G~~~~D~v 88 (320)
T 4aa9_A 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS-M--EGFLGYDTV 88 (320)
T ss_dssp CCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE-E--EEEEEEEEE
Confidence 467788887 68999999999999988542 23322221 111 124567777776 2 344433367
Q ss_pred eecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
.+++..+. ..|-+... ...|=|||+-+
T Consensus 89 ~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 124 (320)
T 4aa9_A 89 TVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY 124 (320)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred EECCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence 88886544 34444332 23588888864
No 91
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=70.11 E-value=17 Score=33.90 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=54.3
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH--------------HHhhcCCc-ccc-------ccceEEEEccCCeeee
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS--------------LAKQYGCP-VTT-------TTQFQVTVADGGVISS 385 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~--------------~~~~l~l~-~~~-------~~~~~v~~a~G~~~~~ 385 (485)
...+.+.|+ .+.+.++|||||+...|... .+...+.- ... ..++.+..++|+...
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~~- 91 (342)
T 3pvk_A 13 TYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQ- 91 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSSCEEE-
T ss_pred EEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCCCeEE-
Confidence 467788887 79999999999999988421 22222221 111 124566777886443
Q ss_pred cceEeeeEEeecceEEE-EEEEEcCC-CCCCeeechhH
Q 042094 386 SGKCSHVPVNSQGFQFH-LDFFLLPV-SGCDIVLGAEW 421 (485)
Q Consensus 386 ~~~~~~v~v~i~~~~~~-~~~~V~~~-~~~dvILG~dw 421 (485)
|....=.|.+++.... ..|-+... ...|=|||+-+
T Consensus 92 -G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 3pvk_A 92 -GTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGY 128 (342)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred -EEEEEEEEEECCEEecceEEEEEEccCCCccEEEecC
Confidence 3333335777886544 44544432 35677887764
No 92
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=69.46 E-value=12 Score=35.54 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=54.4
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHH-----hhcCC-ccc-------cccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLA-----KQYGC-PVT-------TTTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~-----~~l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|....| ...+. ... ....+.+..++|+ + .|....=.|
T Consensus 57 ~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv 133 (370)
T 3psg_A 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS-M--TGILGYDTV 133 (370)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE-E--EEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce-E--EEEEEEEEE
Confidence 467788887 4899999999999888854322 22221 101 1124566777776 2 344333367
Q ss_pred eecceEEE-EEEEEcCCC--------CCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPVS--------GCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~~--------~~dvILG~dw 421 (485)
.+++.... ..|-+.... .+|=|||+-+
T Consensus 134 ~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~ 169 (370)
T 3psg_A 134 QVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 169 (370)
T ss_dssp EETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred eeCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence 88887654 455544322 3688998864
No 93
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=69.35 E-value=4.5 Score=37.85 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=51.4
Q ss_pred eEEEEEEECCeEEEEEEcCCCCccccCHHHHh-------hcCC-ccc------cccceEEEEccCCeeeecceEeeeEEe
Q 042094 330 TMRLKGNLKKHGVTILIDSSSTHIFLNSSLAK-------QYGC-PVT------TTTQFQVTVADGGVISSSGKCSHVPVN 395 (485)
Q Consensus 330 ~~~~~~~i~~~~v~aLiDsGSt~sfIs~~~~~-------~l~l-~~~------~~~~~~v~~a~G~~~~~~~~~~~v~v~ 395 (485)
...+.+.|+.+.+.++|||||+...|...-|. ..+. ... ...++.+..++|+. .|....=.|.
T Consensus 18 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~ 94 (330)
T 1yg9_A 18 QYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSA---VGRGIEDSLT 94 (330)
T ss_dssp TSEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEEE---EEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCceE---EEEEEEEEEE
Confidence 45778888999999999999999987543222 1111 000 01234455556642 3443333677
Q ss_pred ecceEEE-EEEEEcCC-------CCCCeeechhH
Q 042094 396 SQGFQFH-LDFFLLPV-------SGCDIVLGAEW 421 (485)
Q Consensus 396 i~~~~~~-~~~~V~~~-------~~~dvILG~dw 421 (485)
+++.... ..|-+... ...|=|||+-+
T Consensus 95 ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~ 128 (330)
T 1yg9_A 95 ISQLTTSQQDIVLADELSQEVCILSADVVVGIAA 128 (330)
T ss_dssp ETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred ECCEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence 7776543 34443322 23688888765
No 94
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=68.54 E-value=9 Score=36.08 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=53.8
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHHh-----hcCC-ccc-------cccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAK-----QYGC-PVT-------TTTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~-----~l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...-|. ..+. ... ...++.+..++|+ + .|....=.|
T Consensus 24 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~v 100 (351)
T 1tzs_A 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS-L--SGIIGADQV 100 (351)
T ss_dssp CCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC-e--EEEEEEeEE
Confidence 456778887 68999999999999988543221 1111 000 1135677777775 2 344444467
Q ss_pred eecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
.+++.... ..|-+... ...|=|||+-+
T Consensus 101 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 136 (351)
T 1tzs_A 101 SVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY 136 (351)
T ss_dssp EETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred EECCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence 88886543 44544432 23688888754
No 95
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=68.36 E-value=15 Score=34.29 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=53.2
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH--------------HHhhcCCc-ccc-------ccceEEEEccCCeeee
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS--------------LAKQYGCP-VTT-------TTQFQVTVADGGVISS 385 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~--------------~~~~l~l~-~~~-------~~~~~v~~a~G~~~~~ 385 (485)
...+.+.|+ .+.+.++|||||+...|... .+...+.- ... ..++.+..++|+...
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~- 91 (334)
T 1j71_A 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQ- 91 (334)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSCEEE-
T ss_pred EEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCCEEE-
Confidence 567788888 89999999999999988422 12222211 111 124567777876543
Q ss_pred cceEeeeEEeecceEEE-EEEEEcCC-CCCCeeechhH
Q 042094 386 SGKCSHVPVNSQGFQFH-LDFFLLPV-SGCDIVLGAEW 421 (485)
Q Consensus 386 ~~~~~~v~v~i~~~~~~-~~~~V~~~-~~~dvILG~dw 421 (485)
|....=.|.+++.... ..|-+... ...|=|||+-+
T Consensus 92 -G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~ 128 (334)
T 1j71_A 92 -GSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGF 128 (334)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred -EEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcC
Confidence 3333335777776433 34444332 35777888654
No 96
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=67.87 E-value=4.2 Score=38.87 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=53.1
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHH-----hhcCC-cccc-------ccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLA-----KQYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~-----~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...-| ...+. .... ..++.+..++|+ + .|....=.|
T Consensus 63 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv 139 (375)
T 1miq_A 63 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT-V--KGFFSKDLV 139 (375)
T ss_dssp EEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe-E--EEEEEEEEE
Confidence 345567776 7889999999999998754322 12111 0011 124567777776 2 344433467
Q ss_pred eecceEEEEEEEEcCC----------CCCCeeechhH
Q 042094 395 NSQGFQFHLDFFLLPV----------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~~~~~V~~~----------~~~dvILG~dw 421 (485)
.+++..+.-.|-+... ...|=|||+-+
T Consensus 140 ~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~ 176 (375)
T 1miq_A 140 TLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW 176 (375)
T ss_dssp EETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred EEcCceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence 7787654434444432 35788998765
No 97
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=65.97 E-value=20 Score=33.38 Aligned_cols=90 Identities=20% Similarity=0.316 Sum_probs=53.0
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH--------------HHhhcCC-cccc-------ccceEEEEccCCeeee
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS--------------LAKQYGC-PVTT-------TTQFQVTVADGGVISS 385 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~--------------~~~~l~l-~~~~-------~~~~~v~~a~G~~~~~ 385 (485)
...+.+.|+ .+.+.++|||||+...|... .+...+. .... ...+.+..++|+...
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~- 91 (342)
T 2qzx_A 13 TYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDGSYAK- 91 (342)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTSCEEE-
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCCCeEE-
Confidence 567788888 89999999999999988422 1222211 1111 124667777776543
Q ss_pred cceEeeeEEeecceEEE-EEEEEcCC-CCCCeeechhH
Q 042094 386 SGKCSHVPVNSQGFQFH-LDFFLLPV-SGCDIVLGAEW 421 (485)
Q Consensus 386 ~~~~~~v~v~i~~~~~~-~~~~V~~~-~~~dvILG~dw 421 (485)
|....=.|.+++.... ..|-+... ...|=|||+-+
T Consensus 92 -G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 2qzx_A 92 -GKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGF 128 (342)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSC
T ss_pred -EEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEcc
Confidence 3333335777776433 34444332 35677888654
No 98
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=64.67 E-value=15 Score=34.32 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=54.9
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH--------HHhhcCCc-cc-------cccceEEEEccCCeeeecceEee
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS--------LAKQYGCP-VT-------TTTQFQVTVADGGVISSSGKCSH 391 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~--------~~~~l~l~-~~-------~~~~~~v~~a~G~~~~~~~~~~~ 391 (485)
...+.+.|+ .+.+.++|||||+...|... .|...+.- .. ....+.+..++|+... |....
T Consensus 13 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~~--G~~~~ 90 (339)
T 3fv3_A 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQ--GTWGK 90 (339)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTSCEEE--EEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCCceEE--EEEEE
Confidence 567888887 79999999999999988532 11111111 00 1134567778886543 43333
Q ss_pred eEEeecceEEE-EEEEEcCC-CCCCeeechhHH
Q 042094 392 VPVNSQGFQFH-LDFFLLPV-SGCDIVLGAEWL 422 (485)
Q Consensus 392 v~v~i~~~~~~-~~~~V~~~-~~~dvILG~dwL 422 (485)
=.|.+++..+. ..|-+... ...|=|||+-+-
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~ 123 (339)
T 3fv3_A 91 DTVTINGVSITGQQIADVTQTSVDQGILGIGYT 123 (339)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSSCEEECSCG
T ss_pred EEEEECCEEECceEEEEEEecCCCceeEEecCc
Confidence 36778887554 44544432 346778877553
No 99
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=64.04 E-value=16 Score=36.15 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 413 CDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 413 ~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
...|||..||+.+-. ..|+.+.+|-|..
T Consensus 449 ~~~ILGd~fl~~~y~-vfD~~~~rIGfA~ 476 (478)
T 1qdm_A 449 PLWILGDVFMGPYHT-VFDYGKLRIGFAK 476 (478)
T ss_dssp SEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CcEEECHHHhccEEE-EEECCCCEEEEEe
Confidence 347999999999986 7999999998864
No 100
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=63.40 E-value=16 Score=34.51 Aligned_cols=90 Identities=12% Similarity=0.176 Sum_probs=53.3
Q ss_pred CeEEEEEEEC--CeEEEEEEcCCCCccccCHHHHh------hcCC-cccc-------ccceEEEEccCCeeeecceEeee
Q 042094 329 NTMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAK------QYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHV 392 (485)
Q Consensus 329 ~~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~------~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v 392 (485)
....+.+.|+ .+.+.++|||||+...|...-|. ..+. .... ...+.+..++|+ + .|....=
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D 94 (361)
T 1mpp_A 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG-A--NGIYFRD 94 (361)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce-E--EEEEEEE
Confidence 3567888888 89999999999999988544332 1111 0011 124566677776 2 3443333
Q ss_pred EEeecceEEE-EEEEEcC-------------CCCCCeeechhH
Q 042094 393 PVNSQGFQFH-LDFFLLP-------------VSGCDIVLGAEW 421 (485)
Q Consensus 393 ~v~i~~~~~~-~~~~V~~-------------~~~~dvILG~dw 421 (485)
.|.+++..+. ..|-+.. ....|=|||+-+
T Consensus 95 ~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~ 137 (361)
T 1mpp_A 95 SITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAY 137 (361)
T ss_dssp EEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSC
T ss_pred EEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCC
Confidence 5777776543 2333322 124788888754
No 101
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=62.70 E-value=45 Score=30.77 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=54.2
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHH-----HhhcCCc-ccc-------ccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSL-----AKQYGCP-VTT-------TTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~-----~~~l~l~-~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...- |...+.- ... ..++.+..++|+. .|....=.|
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~---~G~~~~D~v 89 (329)
T 1htr_B 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSL---TGFFGYDTL 89 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEE---EEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCCe---EEEEEeeeE
Confidence 567788887 689999999999998875432 2222211 111 1245677777753 344433467
Q ss_pred eecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
.+++.... ..|-+... ...|=|||+-+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (329)
T 1htr_B 90 TVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125 (329)
T ss_dssp EETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred EEcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence 88887544 45555432 23678888754
No 102
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.69 E-value=13 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhH
Q 042094 4 KELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHDQFIRFQ 46 (485)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (485)
..||.++--.+..|++.+++...++.++.++...++....+..
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455557777777788887777777665555443
No 103
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=60.00 E-value=32 Score=31.75 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=52.6
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHH-----HhhcCC-cccc-------ccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSL-----AKQYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~-----~~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...- |...+. .... ...+.+..++|+. .|....=.|
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~D~v 89 (324)
T 1am5_A 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGM---RGILGQDTV 89 (324)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCCe---EEEEEECce
Confidence 567788887 589999999999999886432 222221 1111 1245666777753 344333367
Q ss_pred eecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
.+++..+. ..|-+... ...|=|||+-+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (324)
T 1am5_A 90 SVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125 (324)
T ss_dssp ESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSC
T ss_pred eECCcEEcccEEEEEEecccccccCCCCceEEecCC
Confidence 77776433 34444321 24688888755
No 104
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=56.68 E-value=30 Score=34.14 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=52.9
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHH------hhcCC-ccc-------cccceEEEEccCCeeeecceEeeeE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLA------KQYGC-PVT-------TTTQFQVTVADGGVISSSGKCSHVP 393 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~------~~l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~v~ 393 (485)
.+.+.+.|+ .+.+.++|||||+...|...-+ ...+. ... ...++.+..++|+ + .|....=.
T Consensus 53 ~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dt 129 (478)
T 1qdm_A 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS-I--AGYFSEDS 129 (478)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE-E--EEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC-e--EEEEEEEE
Confidence 467788888 7999999999999998853322 11111 000 1135677777775 2 34443336
Q ss_pred EeecceEEE-EEEEEcCC--------CCCCeeechhH
Q 042094 394 VNSQGFQFH-LDFFLLPV--------SGCDIVLGAEW 421 (485)
Q Consensus 394 v~i~~~~~~-~~~~V~~~--------~~~dvILG~dw 421 (485)
|.+++.... ..|-+... ..+|=|||+-|
T Consensus 130 v~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~ 166 (478)
T 1qdm_A 130 VTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGF 166 (478)
T ss_dssp EEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSC
T ss_pred EEECCeEECCEEEEEEEecCCcccccccccceecccc
Confidence 777876543 23433321 23588888755
No 105
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=55.26 E-value=29 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.2
Q ss_pred CCeeechhHHhhcCCeEEEccCcEEEEEE
Q 042094 413 CDIVLGAEWLRSLGAILWDFSKLTMQFTW 441 (485)
Q Consensus 413 ~dvILG~dwL~~~~~i~id~~~~~~~~~~ 441 (485)
...|||..||+.+-. ..|+.+.+|-|..
T Consensus 58 ~~~ILGd~Fl~~~y~-vfD~~~~riGfA~ 85 (87)
T 1b5f_B 58 PLWILGDVFMRPYHT-VFDYGNLLVGFAE 85 (87)
T ss_dssp BEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CeEEechHHhccEEE-EEECCCCEEEEEE
Confidence 458999999999986 7999999998863
No 106
>4e6s_A Zinc finger and SCAN domain-containing protein 10; protein interaction, other scans, N-terminal PA finger transcription factor, transcription; 1.85A {Mus musculus}
Probab=52.76 E-value=5.2 Score=29.45 Aligned_cols=37 Identities=11% Similarity=-0.061 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 042094 167 SFFISCFLSGLREDIKIGVQMLKPASLLQTFELARFQE 204 (485)
Q Consensus 167 ~~~~~~f~~GL~~~i~~~v~~~~p~tl~~~~~~a~~~e 204 (485)
-..+.+|+.-||.+++..|..+.|.+-.+++. +..+.
T Consensus 51 LLVLEQFL~ilP~e~q~wv~~~~p~s~eeav~-~E~l~ 87 (93)
T 4e6s_A 51 LLVLEQFLSVLPPHVLSRLHGAPLRDGEEVAQ-LEGVP 87 (93)
T ss_dssp HHHHHHHHHTSCHHHHGGGTTCCCSCHHHHHH-TTC--
T ss_pred HHHHHHHHHhCCHHHHHHHHHhCCCcHHHHHH-HHHHh
Confidence 44678999999999999999999999999987 55443
No 107
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=48.56 E-value=24 Score=27.51 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=34.8
Q ss_pred cccCCCCccCCC-hhhHHHHHHHHhHHhccccccchhhhhccccCc-----------hHhHhHHhhhcCCCCCHHHHHHH
Q 042094 78 IRLDFLVLSGEN-PTSLIFRCEQYQRLAALLETDVLSLAIGHLDGD-----------AVPWYHWLEQTMGNMTWAQFKRA 145 (485)
Q Consensus 78 ~~~~~p~F~G~~-~~~wl~~~e~~~~~~~~~d~~kv~~~~~~L~G~-----------A~~W~~~~~~~~~~~tw~~f~~~ 145 (485)
++++.|.|.|.. ..+...-++.++.....|.+.=+.++..||..- ...|+..+........|......
T Consensus 25 ~~p~~P~f~g~t~l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~rlv~~~~~~~W~~Ay~~ 104 (124)
T 3vu7_H 25 VRPPAPNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDF 104 (124)
T ss_dssp -----CCCSSSCSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred CCCCCCccCCCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 566678999975 344444455555444556555555555555432 24466666554455567654333
No 108
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=45.40 E-value=17 Score=31.96 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=51.3
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH------HHhhcCC-cccc-------ccceEEEEccCCeeeecceEeeeE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS------LAKQYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHVP 393 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~------~~~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v~ 393 (485)
.+.+.+.|+ .+.+.++|||||+...|... .|...+. .... ..++.+..++|+ + .|....=.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~ 90 (239)
T 1b5f_A 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS-I--TGFFSQDS 90 (239)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc-E--EEEEEEEE
Confidence 567788887 79999999999999988432 2222221 1111 124566677775 2 34433335
Q ss_pred EeecceEEE-EEEEEcC--------CCCCCeeechhH
Q 042094 394 VNSQGFQFH-LDFFLLP--------VSGCDIVLGAEW 421 (485)
Q Consensus 394 v~i~~~~~~-~~~~V~~--------~~~~dvILG~dw 421 (485)
|.+++.... ..|-+.. ....|=|||+-+
T Consensus 91 v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 127 (239)
T 1b5f_A 91 VTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSF 127 (239)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred EEECCcEEccEEEEEEEeccCccccccCcceEEecCc
Confidence 777775432 2232221 234688888754
No 109
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=43.09 E-value=4.2 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=16.3
Q ss_pred CceeecCCCCCCCCcCCCc
Q 042094 271 GLCFNCDEQFKPGHRCKAP 289 (485)
Q Consensus 271 ~~Cf~Cg~~GH~a~~C~~~ 289 (485)
..|=.|...||.+.+|...
T Consensus 4 pYCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCNDD 22 (26)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred ccchHHHHhCcccccCCcc
Confidence 5699999999999999543
No 110
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=42.13 E-value=20 Score=33.16 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=53.4
Q ss_pred CeEEEEEEEC--CeEEEEEEcCCCCccccCHHHHhh----cCC-ccc-------cccceEEEEccCCeeeecceEeeeEE
Q 042094 329 NTMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAKQ----YGC-PVT-------TTTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 329 ~~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~~----l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
....+.+.|+ .+.+.++|||||+...|...-+.. .+. ... ...++.+..++|+.+. |....=.|
T Consensus 15 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v 92 (325)
T 2apr_A 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSAS--GILAKDNV 92 (325)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEE--EEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchHhcCCCCCCcccCCCeeeCCCEEEEEECCCCCEE--EEEEEEEE
Confidence 3567888898 899999999999999885432221 111 000 1124567777776543 33333356
Q ss_pred eecceEEE-EEEEEcCC-------CCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLPV-------SGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~~-------~~~dvILG~dw 421 (485)
.+++.... ..|-+... ...|=|||+-+
T Consensus 93 ~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~ 127 (325)
T 2apr_A 93 NLGGLLIKGQTIELAKREAASFASGPNDGLLGLGF 127 (325)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSC
T ss_pred EECCEEECcEEEEEEeccCcccccCCCceEEEeCC
Confidence 77776543 23333221 12788888755
No 111
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=41.58 E-value=34 Score=21.98 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhHHH
Q 042094 3 IKELEERVEQLSHQFNEKVEVLSQQSNDLQE 33 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (485)
.+.|++.+|+||..+-..++......+.++.
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567777777777776555544444444433
No 112
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=38.24 E-value=23 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhhhhh
Q 042094 5 ELEERVEQLSHQFNEK 20 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (485)
.||+|++.||..+...
T Consensus 20 ~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 20 DFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554433
No 113
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=38.16 E-value=66 Score=19.40 Aligned_cols=30 Identities=40% Similarity=0.469 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhHH
Q 042094 3 IKELEERVEQLSHQFNEKVEVLSQQSNDLQ 32 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (485)
+..||.++..|+....|..+..+-+..++.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567899999999988887766665555443
No 114
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.48 E-value=29 Score=20.25 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=11.2
Q ss_pred CcHHHHHHHHHHhhhhhhhhHH
Q 042094 1 MTIKELEERVEQLSHQFNEKVE 22 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (485)
||.++-.+.+..++..++..++
T Consensus 8 mTLeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544443
No 115
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.44 E-value=63 Score=18.67 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhHHHHHh
Q 042094 3 IKELEERVEQLSHQFNEKVEVLSQQSNDLQELIL 36 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (485)
|++||+.|+.|...- ..+++.-+.++++..
T Consensus 3 MnQLE~kVEeLl~~~----~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEV----WHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhh----HHHHHHHHHHHHHhc
Confidence 667777776665542 233444444444443
No 116
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=36.01 E-value=27 Score=32.26 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=53.3
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHH-----HhhcCC-cccc-------ccceEEEEccCCeeeecceEeeeEE
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSL-----AKQYGC-PVTT-------TTQFQVTVADGGVISSSGKCSHVPV 394 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~-----~~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v 394 (485)
...+.+.|+ .+.+.++|||||+...|...- +...+. .... ..++.+..++| .+ .|....=.|
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~--~G~~~~D~v 90 (329)
T 1dpj_A 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTG-SL--EGYISQDTL 90 (329)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE-EE--EEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCc-eE--EEEEEEEEE
Confidence 567788887 799999999999998875322 222221 1111 12466777777 32 344433367
Q ss_pred eecceEEE-EEEEEcC--------CCCCCeeechhH
Q 042094 395 NSQGFQFH-LDFFLLP--------VSGCDIVLGAEW 421 (485)
Q Consensus 395 ~i~~~~~~-~~~~V~~--------~~~~dvILG~dw 421 (485)
.+++.... ..|-+.. ....|=|||+-+
T Consensus 91 ~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 126 (329)
T 1dpj_A 91 SIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY 126 (329)
T ss_dssp EETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred EECCeEECCeEEEEEEecCccccccCCcceEEEeCC
Confidence 77876543 3344332 224788888765
No 117
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=34.31 E-value=29 Score=33.05 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=50.0
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHHhh-cCC-ccc-------cccceEEEEccCCeeeecceEeeeEEeec-
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAKQ-YGC-PVT-------TTTQFQVTVADGGVISSSGKCSHVPVNSQ- 397 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~~-l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~v~v~i~- 397 (485)
.+.+.+.|+ .+.+.++|||||+...|...-+.. .+. ... ...++.+..++|+. .|....=.|.++
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~ig~ 98 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW---EGELGTDLVSIPH 98 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEECTT
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcEE---EEEEEeEEEEECC
Confidence 467788898 899999999999999885432211 111 000 11245677777763 243333356665
Q ss_pred ce--EEEEEEEEc----C----CCCCCeeechhH
Q 042094 398 GF--QFHLDFFLL----P----VSGCDIVLGAEW 421 (485)
Q Consensus 398 ~~--~~~~~~~V~----~----~~~~dvILG~dw 421 (485)
+. .+.+.|-+. . ....|=|||+-+
T Consensus 99 g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~ 132 (395)
T 2qp8_A 99 GPNVTVRANIAAITESDKFFINGSNWEGILGLAY 132 (395)
T ss_dssp SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CCCceEEEEEEEEEccCcccccccCccceEEcCc
Confidence 32 222222221 1 134688888765
No 118
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.31 E-value=63 Score=22.19 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhhh
Q 042094 3 IKELEERVEQLSHQFN 18 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (485)
|+.||..|..|+....
T Consensus 31 i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 31 LKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665443
No 119
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=34.05 E-value=27 Score=30.60 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.7
Q ss_pred EEEEEcCCCCccccCHHHHhhc
Q 042094 342 VTILIDSSSTHIFLNSSLAKQY 363 (485)
Q Consensus 342 v~aLiDsGSt~sfIs~~~~~~l 363 (485)
..++||||++..++..++++.+
T Consensus 211 ~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 211 CQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEEEECTTCSSEEECHHHHHHH
T ss_pred CEEEEecCcchhhCCHHHHHHH
Confidence 5799999999999999988865
No 120
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=33.06 E-value=84 Score=22.56 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHhhhhhhhhHHHHHHhhhhHHH
Q 042094 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQE 33 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (485)
++++.|++.++.|..-++|.++......++..+
T Consensus 24 l~le~Lee~leKl~~VveERree~~~~~~~~~e 56 (86)
T 3nr7_A 24 STLETLEEMLEKLEVVVNERREEESAAAAEVEE 56 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999888877665554444333
No 121
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=31.92 E-value=34 Score=32.39 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=49.3
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHHHhhc-CC-cccc-------ccceEEEEccCCeeeecceEeeeEEeecc
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSLAKQY-GC-PVTT-------TTQFQVTVADGGVISSSGKCSHVPVNSQG 398 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~~~~l-~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~v~v~i~~ 398 (485)
...+.+.|+ .+.+.++|||||+...|...-+... +. .... ..++.+..++|+. .|....=.|.+++
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~i~~ 90 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVTVKYTQGSW---TGFVGEDLVTIPK 90 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEEETT
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEecCCCCccccCcccccCccceeCCceEEEEECCcEE---EEEEEEEEEEECC
Confidence 467888887 7999999999999998753322111 11 0001 1246677777752 3433333566654
Q ss_pred e---EEEEEEEEc--------CCCCCCeeechhH
Q 042094 399 F---QFHLDFFLL--------PVSGCDIVLGAEW 421 (485)
Q Consensus 399 ~---~~~~~~~V~--------~~~~~dvILG~dw 421 (485)
. ...+.|-+. .....|=|||+-+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~ 124 (383)
T 2ewy_A 91 GFNTSFLVNIATIFESENFFLPGIKWNGILGLAY 124 (383)
T ss_dssp TEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CccceeEEEEEEEEeecceeeccCcCceEEecCc
Confidence 1 222222221 1124688888765
No 122
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.77 E-value=48 Score=19.16 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhh
Q 042094 3 IKELEERVEQLSHQ 16 (485)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (485)
|.+||+.|+.|-..
T Consensus 3 MnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 3 VKQLKAKVEELKSK 16 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55566665555443
No 123
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=31.26 E-value=36 Score=32.58 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.9
Q ss_pred CeEEEEEEEC--CeEEEEEEcCCCCccccC
Q 042094 329 NTMRLKGNLK--KHGVTILIDSSSTHIFLN 356 (485)
Q Consensus 329 ~~~~~~~~i~--~~~v~aLiDsGSt~sfIs 356 (485)
....+.+.|+ .+.+.++|||||+...|.
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~ 50 (403)
T 3aup_A 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVN 50 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred ceEEEEEECCCCCceeEEEEECCCCceeEC
Confidence 3577888888 789999999999998875
No 124
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.21 E-value=1.2e+02 Score=20.93 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhHHHHHhhhhh
Q 042094 5 ELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLHD 40 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (485)
.|+++|..++..+++.+..-.....++..+...++.
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777776664444444444444444433
No 125
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=31.02 E-value=36 Score=32.51 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=50.4
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHH-HHhhcCC-ccc-------cccceEEEEccCCeeeecceEeeeEEeecc
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSS-LAKQYGC-PVT-------TTTQFQVTVADGGVISSSGKCSHVPVNSQG 398 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~-~~~~l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~ 398 (485)
.+.+.+.|+ .+.+.++|||||+...|... ++...+. ... ....+.+..++|+. .|....=.|.+++
T Consensus 29 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~D~v~ig~ 105 (402)
T 3vf3_A 29 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW---EGELGTDLVSIPH 105 (402)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEECTT
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEccCCCCcccCCcCcccCcccccCCCEEEEEECcEEE---EEEEEEEEEEECC
Confidence 577888898 79999999999999888432 1111111 000 11345677777763 3443333566763
Q ss_pred -e--EEEEEEEEc--------CCCCCCeeechhH
Q 042094 399 -F--QFHLDFFLL--------PVSGCDIVLGAEW 421 (485)
Q Consensus 399 -~--~~~~~~~V~--------~~~~~dvILG~dw 421 (485)
. .....+-+. .....|=|||+-+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 139 (402)
T 3vf3_A 106 GPNVTVRANIAAITESDKFFINGSNWEGILGLAY 139 (402)
T ss_dssp SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ccccceeeeEEEEEccccccccCCCccceEEcCc
Confidence 2 222222221 1234688888875
No 126
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.85 E-value=52 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhh
Q 042094 3 IKELEERVEQLSHQ 16 (485)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (485)
|.+||++|+.|-..
T Consensus 3 MnQLE~kVEeLl~~ 16 (34)
T 2oxj_A 3 MXQLEXKVXELLXK 16 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666555443
No 127
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.73 E-value=57 Score=18.56 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhh
Q 042094 3 IKELEERVEQLSHQ 16 (485)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (485)
|.+||+.|+.|-..
T Consensus 3 MnQLEdKVEeLl~~ 16 (34)
T 3c3f_A 3 MXQIEXKLEXILSX 16 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 55666666655443
No 128
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=29.58 E-value=11 Score=26.77 Aligned_cols=17 Identities=24% Similarity=0.776 Sum_probs=14.6
Q ss_pred CCceeecCCCCCCCCcCC
Q 042094 270 KGLCFNCDEQFKPGHRCK 287 (485)
Q Consensus 270 ~~~Cf~Cg~~GH~a~~C~ 287 (485)
...||+|++.||. ..|.
T Consensus 58 ~~FC~~C~~~wH~-~~C~ 74 (80)
T 2jmo_A 58 FAFCRECKEAYHE-GECS 74 (80)
T ss_dssp CCEETTTTEECCS-SCSS
T ss_pred CeeccccCccccC-Cccc
Confidence 3569999999999 9994
No 129
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.31 E-value=1.3e+02 Score=21.21 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhHHHHHhhhh
Q 042094 5 ELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLH 39 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (485)
.|+++|..++..+++.+..-.....++..+...++
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777666444444444444444433
No 130
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.21 E-value=51 Score=18.81 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhh
Q 042094 3 IKELEERVEQLS 14 (485)
Q Consensus 3 ~~~~~~~~~~~~ 14 (485)
|.+||+.|+.|-
T Consensus 3 MnQLEdKvEeLl 14 (34)
T 2bni_A 3 MKQIEDKLEEIL 14 (34)
T ss_dssp CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 455555554443
No 131
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.21 E-value=95 Score=22.11 Aligned_cols=9 Identities=56% Similarity=0.807 Sum_probs=3.9
Q ss_pred HHHHHHhhh
Q 042094 7 EERVEQLSH 15 (485)
Q Consensus 7 ~~~~~~~~~ 15 (485)
++++..++.
T Consensus 5 e~rv~~LEr 13 (83)
T 2xdj_A 5 EDRVTQLER 13 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 132
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=28.11 E-value=42 Score=32.68 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=50.4
Q ss_pred eEEEEEEEC--CeEEEEEEcCCCCccccCHHH-HhhcCC-cc-------ccccceEEEEccCCeeeecceEeeeEEeecc
Q 042094 330 TMRLKGNLK--KHGVTILIDSSSTHIFLNSSL-AKQYGC-PV-------TTTTQFQVTVADGGVISSSGKCSHVPVNSQG 398 (485)
Q Consensus 330 ~~~~~~~i~--~~~v~aLiDsGSt~sfIs~~~-~~~l~l-~~-------~~~~~~~v~~a~G~~~~~~~~~~~v~v~i~~ 398 (485)
.+.+.+.|+ .+.+.++|||||+...|...- +...+. .. .....+.+..++|+. .|....=.|.+++
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~cc~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~ig~ 151 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW---EGELGTDLVSIPH 151 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEECTT
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEecccccccCCcccCCCCCCcccCCccEEEEeCCeEE---EEEEEEEEEEECC
Confidence 567888898 799999999999998884321 111111 00 012355677777763 3443333566763
Q ss_pred ---eEEEEEEEEc--------CCCCCCeeechhH
Q 042094 399 ---FQFHLDFFLL--------PVSGCDIVLGAEW 421 (485)
Q Consensus 399 ---~~~~~~~~V~--------~~~~~dvILG~dw 421 (485)
......|.+. .....|=|||+-+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 185 (455)
T 3lpj_A 152 GPNVTVRANIAAITESDKFFINGSNWEGILGLAY 185 (455)
T ss_dssp SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CcceeeEEEEEEEEccCcccccCCCcceEEEeCc
Confidence 2222222221 1134688888765
No 133
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.79 E-value=73 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHhhhhhhhhHHHHHHhhhhHHHHH
Q 042094 2 TIKELEERVEQLSHQFNEKVEVLSQQSNDLQELI 35 (485)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (485)
|+.+||+++..++.++...+..+..+...+.++.
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 1 NTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888888888888766655444444444444
No 134
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.07 E-value=1e+02 Score=17.46 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhh
Q 042094 3 IKELEERVEQLSHQ 16 (485)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (485)
|++||+.|+.|-..
T Consensus 2 MnQLEdKVEell~~ 15 (33)
T 2wq1_A 2 MKQLEDKIEENTSK 15 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHh
Confidence 67777777766554
No 135
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.06 E-value=79 Score=21.80 Aligned_cols=6 Identities=17% Similarity=0.251 Sum_probs=2.2
Q ss_pred hhhhhh
Q 042094 13 LSHQFN 18 (485)
Q Consensus 13 ~~~~~~ 18 (485)
|+..++
T Consensus 24 Lq~~L~ 29 (72)
T 3nmd_A 24 LQYALQ 29 (72)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 136
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.63 E-value=1e+02 Score=19.39 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhhh
Q 042094 3 IKELEERVEQLSHQFN 18 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (485)
.++|++.+..|++.+.
T Consensus 4 vkaleekvkaleekvk 19 (67)
T 1lq7_A 4 VKALEEKVKALEEKVK 19 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5789999999988876
No 137
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.50 E-value=1.1e+02 Score=22.05 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhhhhh------HHHHHHhhhhHHHHHhhhhhhhhh
Q 042094 3 IKELEERVEQLSHQFNEK------VEVLSQQSNDLQELILSLHDQFIR 44 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 44 (485)
|++|+..+..|+.+|+.- -..+....+++..+...++....|
T Consensus 31 Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 31 LEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666665421 123344444555555555544443
No 138
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.29 E-value=42 Score=22.63 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhhhhhH
Q 042094 3 IKELEERVEQLSHQFNEKV 21 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (485)
++.|+++++.||+.|....
T Consensus 46 ~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667776666665443
No 139
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.09 E-value=1.4e+02 Score=18.51 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhHHH
Q 042094 5 ELEERVEQLSHQFNEKVEVLSQQSNDLQE 33 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (485)
.+|+.|+.|+..+.-.......+.+++..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888887776555544444444333
No 140
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.72 E-value=1.2e+02 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhHHHHHhh
Q 042094 3 IKELEERVEQLSHQFNEKVEVLSQQSNDLQELILS 37 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (485)
|++|++.++.+++.++..+++...-..+.|+....
T Consensus 6 ~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~ 40 (123)
T 4dzo_A 6 VAELKKQVESAELKNQRLKEVFQTKIQEFRKACYT 40 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877777777777776665544
No 141
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.08 E-value=89 Score=17.81 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHhhhh
Q 042094 2 TIKELEERVEQLSHQ 16 (485)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (485)
-|++|++.|+.|-..
T Consensus 2 RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 2 KVKQLADAVEELASA 16 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHh
Confidence 466777776665443
No 142
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.49 E-value=1.5e+02 Score=20.72 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHhhhhhhhhHHHHHHhhhhHHHHHhhhh
Q 042094 1 MTIKELEERVEQLSHQFNEKVEVLSQQSNDLQELILSLH 39 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (485)
|+...|++|++.||..+.=......++.+.+-+....++
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id 45 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGA 45 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999887555444444444444444433
No 143
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=21.06 E-value=85 Score=15.99 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHhhCCCc
Q 042094 138 TWAQFKRALVTQFGTFE 154 (485)
Q Consensus 138 tw~~f~~~l~~~F~~~~ 154 (485)
.|..|...|++-|.+..
T Consensus 2 awknfwsslrkgfydge 18 (26)
T 2khf_A 2 AWKNFWSSLRKGFYDGE 18 (26)
T ss_dssp CHHHHHHHHHHHHTTTH
T ss_pred cHHHHHHHHHhhcccch
Confidence 58899999999887643
No 144
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.93 E-value=1.7e+02 Score=19.16 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhH
Q 042094 3 IKELEERVEQLSHQFNEKVEVLSQQSNDL 31 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (485)
+..|++.++.|+..-.+.......+.+++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665544444434433333
No 145
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.64 E-value=74 Score=22.50 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhhhhhH
Q 042094 3 IKELEERVEQLSHQFNEKV 21 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (485)
|+.|++.++.|+.++++.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444333
No 146
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.34 E-value=1.3e+02 Score=17.12 Aligned_cols=16 Identities=19% Similarity=0.638 Sum_probs=9.1
Q ss_pred CcHHHHHHHHHHhhhh
Q 042094 1 MTIKELEERVEQLSHQ 16 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (485)
|-|++|++.|+.+-..
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 3466666666655444
Done!